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List of publications related to Clowder (formerly Medici).

If you publish work that uses Clowder, please cite the following paper:

Luigi Marini, Indira Gutierrez-Polo, Rob Kooper, Sandeep Puthanveetil Satheesan, Maxwell Burnette, Jong Lee, Todd Nicholson, Yan Zhao, and Kenton McHenry. 2018. Clowder: Open Source Data Management for Long Tail Data. In Proceedings of the Practice and Experience on Advanced Research Computing (PEARC '18). ACM, New York, NY, USA, Article 40, 8 pages. DOI: https://doi.org/10.1145/3219104.3219159

Digital Preservation

• S. Padhy, J. Alameda, R. Kooper, R. Liu, S. P. Satheesan, I. Zharnitsky, G. Jansen, M. Dietze, P. Kumar, B. Minsker, C. Navarro, M. Slavenas, W. Sullivan, and K. McHenry, “An Architecture for Automatic Deployment of Brown Dog Services At Scale into Diverse Computing Infrastructures,” in XSEDE, 2016.
• S. Padhy, L. Diesendruck, R. Kooper, R. Liu, L. Marini, C. Sophocleous, L. Marini, R. Georgiou, M. Elfarargy, and K. McHenry, “Medici 2: A Scalable Content Management System for Cultural Heritage Datasets,” Code4Lib, 2017 [Online]. Available: http://journal.code4lib.org/articles/12317. Navarro, M. Slavenas, I. Zharnitsky, M. Dietze, P. Kumar, B. Minsker, J. Lee, and K. McHenry, “Autocuration Cyberinfrastrucutre for Scientific Discovery and Preservation,” in IEEE eScience, 2015.
• J. Myers, M. Hedstrom, D. Akmon, S. Payette, B. A. Plale, I. Kouper, S. McCaulay, R. McDonald, I. Suriarachchi, A. Varadharaju, P. Kumar, M. Elag, J. Lee, R. Kooper and L. Marini, “Towards Sustainable Curation and Preservation: The SEAD Project's Data Services Approach,” in 2015 IEEE 11th International Conference on e-Science, 2015.
• S. Padhy, G. Jansen, J. Alameda, E. Black, L. Diesendruck, M. Dietze, P. Kumar, R. Kooper, J. Lee, R. Liu, R. Marciano, L. Marini, D. Mattson, B. Minsker, C. Navarro, M. Slavenas, W. Sullivan, J. Votava, and K. McHenry, “Brown Dog: Leveraging Everything Towards Autocuration,” in IEEE Big Data, 2015.
  
• K. McHenry, J. Lee, M. Dietze, P. Kumar, B. Minsker, R. Marciano, L. Marini, R. Kooper, and D. Mattson, “DIBBs Brown Dog, PaaS for SaaS for PaaS,” in XSEDE Reproducibility Workshop, 2014.
  

• L. Marini, R.Kooper, J.Futrelle, J.Plutchak, A.Craig, T.McLaren, and J. Myers, “Medici: A scalable multimedia environment for research,” in The Microsoft e-Science Workshop, 2010.

Geoscience

• M. Elag, P. Kumar, L. Marini, J. Myers, M. Hedstrom, and B. Plale, “Identification and characterization of information-networks in long-tail data collections,” Environmental Modelling & Software, 2017. http://www.sciencedirect.com/science/article/pii/S1364815216309732

Material Science

• P. Nguyen, S. Konstanty, T. Nicholson, T. O’Brien, A. Schwartz-Duval, T. Spila, K. Nahrstedt, R. Campbell, I. Gupta, M. Chan, K. McHenry, and N. Paquin,  "4CeeD: Real-time Acquisition and Analysis Framework for Materials-related Cyber-Physical Environments. ," in17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, 2017.

Medicine

• Y. Zhao, E. Black, L. Marini, K. McHenry, N. Kenyon, R. Patil, A. Kajdacsy-Balla, and A. Bartholomew,  "Automatic Glomerulus Extraction in Whole Slide Images Towards Computer Aided Diagnosis. 2016.
  S. Padhy, J. Alameda, R. Kooper, R. Liu, S. P. Satheesan, I. Zharnitsky, G. Jansen, M. Dietze, P. Kumar, B. Minsker, C. Navarro, M. Slavenas, W. Sullivan, and K. McHenry, “An Architecture for Automatic Deployment of Brown Dog Services At Scale into Diverse Computing Infrastructures,” in XSEDE, 2016.," 2016 IEEE 12th International Conference on e-Science (e-Science), 2016.
• L. Marini, A. Vaidya, N. Tenczar, N. Kenyon, A. Bartholomew, D. Salomon, et al., "Extending the Medici Data Management Service for Medical Research Involving Distributed Teams," IEEE eScience, 2013.
  

Social Science

• M. Poole, N. Lambert, S. Satheesan, A. Das, A. Yahja, and M. Hasegawa-Johnson, "GroupScope: A Framework and Tools for Large Scale Study of Social Processes," in International Conference on Computational Social Science, 2015.

Cultural Heritage & Arts

• P. Rodriguez, S. Puthanveetil Satheesan, J. Will, E. Wuerffel, and A. Craig, “Extracting, Assimilating, and Sharing the Results of Image Analysis on the FSA/OWI Photography Collection,” to be presented at PEARC, 2017.
  
• A. Langmead, P. Rodriguez, S. Puthanveetil Satheesan, and A. Craig, “Extracting Meaningful Data from Decomposing Bodies,” to be presented at PEARC, 2017.
  
• C. Sophocleous, L. Marini, R. Georgiou, M. Elfarargy, and K. McHenry, “Medici 2: A Scalable Content Management System for Cultural Heritage Datasets,” in Code4Lib, 2017. http://journal.code4lib.org/articles/12317
• M. Slavenas, E. Wuerffel, P. Rodriguez, J. Will, and A. Craig, “Image Analysis and Infrastructure Support for Mining the Farm Security Administration – Office of War Information Photography Collection,” in XSEDE, 2016.
  
• SV. PadhyKuhn, LA. DiesendruckCraig, RM. KooperSimeone, RS. P. LiuSatheesan, and L. Marini, C. Navarro“The VAT: Enhanced Video Analysis,” in XSEDE, 2015.
  

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  J. Lee, and K. McHenry, “Autocuration Cyberinfrastrucutre for Scientific Discovery and Preservation,” in IEEE eScience, 2015.

  and S. P. Satheesan, “MOVIE: Large Scale Automated Analysis of MOVing ImagEs,” in XSEDE, 2014. http://dl.acm.org/citation.cfm?id=2616529