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WhoPlanned - MondayAccomplished - Friday
 

Done:

  1. small fixes on pyclowder:onbuild.
  2. dockerize greenness in circle area extractor.
  3. clusterman PR reviews.

Under preview:

  1. BD-2072, update bd-base dev docker compose file to use Clowder Env.


  • IN-CORE
    • Science code (DIN model)
    • Science code (transportation model follow up)
    • Read the new semantic code
    • TBD
  • SMM
    • move macroscope to hubzero hosting
    • Faculty trolling web app rapid prototyping
  • IN-CORE
    • Science code DIN model send to collaborator (Round1)
    • Science code transportation model send to collaborator (Round 2)
    • Review the new semantic code (on-going)
  • SMM
    • move macroscope to hubzero hosting (on-going)
    • Faculty trolling web app rapid prototyping (django framework done; script done)
  • Cover Crop / Farmdoc
    • Project meeting
    • Plan next sprint
  • Ergo
    • Test ERGO-544 - handling multiple geometry types for a schema type (e.g. pt/polygon building damage results)
  • IN-CORE
    • Code review
    • Continue working with OpenSees to define semi-annual meeting demo
    • Finish sprint and plan next sprint
  • General
    • Half days M - W, vacation Th, Fr
 
  • All: leave likely in next few days
  • WT
    • Finalize backup PR
    • Release v0.1
  • NDS
    • Review PRs for deploy tools and Forge
  • TERRA
    • Condor 101
 
  
  
  • Signature_Analysis_Pipeline
    • Allow negative value
    • Remove ensembl gene name mapping
  • Gene_Prioritization_Pipeline
    • Add impute_na function
  • Data_Cleanup_Pipeline
    • Add status file for pasted_gene_set_conversion and create tests

  •  Signature_Analysis_Pipeline
    • Added logic to tolerant negative value and added tests file
    • Removed ensembl gene name mapping
  • Gene_Prioritization_Pipeline
    • Added impute_na function and updated related tests
  • Data_Cleanup_Pipeline
    • Added status file for pasted_gene_set_conversion and create tests
  
  • CSSI proposals
  • HR
  •  CSSI proposals
  • BD
    • Pearc18 clowder paper
    • Clowder refactoring
    • Pull requests
  • GLM / GLTG / IMLCZO
    • Pull requests
    • Geostreaming API development
  • SMM
    • Clowder html previewer
  • Industry
    • Planning and meetings
  • Pearc18 clowder paper submitted
  • Prepare NCSA software talk on Clowder
  • Continued Clowder refactoring
  • CSSI meetings and writing
  • Clowder documentation
  •  vbd
    • start building endpoints for each data input manipulation
  • gltg
    • sql query for updating parameters
 
 
  • Pearc18 terra paper submitted
  • laser3d point cloud science package overhaul
    • remove PDAL dependency
    • implement pure python for conversion code
    • use open source LAS libraries for DSM generation
  • BETYdb 5.1 testing
  • terrautils pypi push and documentation
  • pyClowder2 client updates started
  • MDF
    • read the docs for the Sphinx deployment
    • Forge code merge conflicts
    • Arrange a closed space for FF project
  • Farmdoc
    • documentation/description
      Jira
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyFD-2
      ,
    • setup test VM
      Jira
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyFD-3
  • FF space for Andre, see MDF
  • other: backup MWRD code
  • MDF
    • dataset bc011 zip and metadata
    • done
    • after April 16
    • outreach
  • Farmdoc
    • done
    • done
  • other: backup MWRD code
  • NDS
    • Jira
      serverJIRA
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyNDS-1116
  • KnowEnG
  • Crops in Silico
    • Ensure prototype UI is still working
    • Build up models.json around some simple working examples
    • Start hooking up cis-apiserver to MongoDB
    • Milestone update meeting
  • NDS
    • Jira
      serverJIRA
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyNDS-1116
  • KnowEnG
    • Brought together all existing KnowEnG Kubernetes prototypes to deploy an autoscaling Kubernetes cluster on AWS with the refactored Docker images and pipeline jobs Python code
  • Crops in Silico
  • GLTG
    • Meeting Prep
    • Jira
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyGEOD-1070
    • Jira
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyGLGVO-403
  • IMLCZO
    • Jira
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyGEOD-1063
    • Re-run Parsers for Flux Tower and Allerton non-Decagon
  • GLTG
    • Meeting Prep
    • Jira
      showSummaryfalse
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyGEOD-1070
    • Jira
      showSummaryfalse
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyGEOD-1071
    • Jira
      showSummaryfalse
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyGEOD-1073
  • IMLCZO
    • Re-ran Parsers for Flux Tower and Allerton non-Decagon
    • Jira
      showSummaryfalse
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyGEOD-1063
      Jira
      showSummaryfalse
      serverJIRA
      columnskey,summary,type,created,updated,due,assignee,reporter,priority,status,resolution
      serverIdb14d4ad9-eb00-3a94-88ac-a843fb6fa1ca
      keyIMLCZO-217
 
  • Fragility Mapping Service
    • Pull Request Merged
  • Pull Request Review
  • Title 9 Training
  • Semantic Service
  • Webinar
  •  Syngenta - Extractor
  • k8s dev setup for KnowEnG
  • AWS Identity & Access Management for KnowEnG Devs
  •  Syngenta - Extractor (W.I.P.)
  • k8s dev setup for KnowEnG (W.I.P.)
  • AWS Identity & Access Management for KnowEnG Devs
  
  
  
 
  •  BD
    • review pr
    • identify the bug for pecan on softwareserver-0002, need rob to finish.
  • GLM
    • review pr
  • CC
    • test for flask service

Check VMs in Nebula

Tested ldap credential to Jupyterhub

Add Jupyterlab in Jupyterhub

Clean up PyCSW post routing and finish up

  • Worked on checking VMs in Nebula
  • Embeded ldap credential to Jupyterhub
  • Added Jupyterlab in Jupyterhub

  • Cleaned up PyCSW post routing and finish up

...