Page History

INCROE

• Science code: wrap up Fuyu's code; pass 2nd round edits to Xian
• Pyincore: add data service test and fix pyincore according to failed cases
• Semantic: meet with Omar to start implementing
• Other tasks TBD

SMM

• faculty trolling project: prettify the frontend and add UI components
• meetings
• Clowder related tasks (if have time)

INCROE

• Science code: wrap up Fuyu's code; pass 2nd round edits to Xian
• Pyincore: add data service test and fix pyincore according to failed cases
• Fragility browser on jupyterlab

SMM

• faculty trolling project: prettify the frontend and add UI components

• Cover Crop
  • Project meeting/web design review
  • Update covercrop VM with new genotype for Rye
  • Code review
• FarmDoc
  • Document migration steps for moving covercrop postgres/geoserver to fd-geoserver
• IN-Core
  • Continue working on moving building damage analyses to pyincore
  • Work on utility to create result dataset
  • Code review

INCORE

• Implement PUT test cases for data service
• Start moving Water Network Analysis code from v1 to python 

Farm doc

• Setup local dev environment. Run Soil Converter locally
• Migrate postgres tables to the new farmdoc VM

• KnowEng
  • Various changes to imputation function in Data_Cleanup_Pipeline
  • Allowing replace NA value with customized value when write to file
  • Testing for output reproducebility for samples_clustering_pipeline and general_clustering_pipeline
  • Add intersection check for Feature_Prioritization_Pipeline & refactor the common code between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
  • Update Dockerfile in all repositories to sync on latest base_image and maintainer list
  • Build docker image for data_cleanup_pipeline and signature_analysis_pipeline
  • Investigate issue with input file cannot be correctly read by pandas
• In-Core
  • review pull request

• KnowEng
  • Finished several changes to imputation function in Data_Cleanup_Pipeline
    • Removed impute_na from Geneset_Characterization_Pipeline
    • Added impute_na to Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
    • Added default option of imputation to be reject
    • Added new tests
  • Added option to allow replacing NA value with any customized characters.
  • Tested samples_clustering_pipeline and general_clustering_pipeline for reproducebility issue and reported findings.
  • Added intersection check for Feature_Prioritization_Pipeline & refactor the common code between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
  • Update Dockerfile in all repositories to sync on latest base_image and maintainer lists
  • Built docker image for data_cleanup_pipeline and signature_analysis_pipeline
  • Investigated the issue that input data was altered without any changes and found that duplicate columns was causing this. Need more investigation.
• In-Core
  • Reviewed new building_damage_analysis.py

• CSSI proposals

• CSSI proposals

• CSSI proposal
• Clowder documentation
• Clowder 1.4 release and PR reviews
• Syngenta extractors
• Geodashboard PR reviews
• BD PR rewiews
• Vacation Friday

• CSSI proposal
• Clowder documentation
• Clowder 1.4 release and PR reviews
• BD PR rewiews
• Vacation Friday
• Created Cyprus Clowder instance
• Created IMLCZO parsers VM

•  gltg
  • ingesting data
• vbd
  • parsing mosquito data
  • running model

• laser 3d format conversion
• pipeline health monitoring

• NDS / TERRA
  • Keep trying to scale up the TERRA Workbench
  • Maintenance where needed
• KnowEnG
  • Last week on the project
  • Kubernetes Demo on Wednesday
  • NIH Demo on Friday
• Crops in Silico
  • Continue collecting feedback and iterating until satisfied

• NDS / TERRA
  • Keep Failed attempts trying to scale up the TERRA Workbench
  • Maintenance where neededMinor Workbench maintenance
• KnowEnG
  • NIH Demo cancelled due to scheduling conflicts
  • Wrap up final bits of Kubernetes for their stuff
• Crops in Silico
  • Continue collecting feedback and iterating until satisfied

• Industry - Pix4D Extractor (W.I.P.)
• k8s dev setup/test for KnowEnG (W.I.P.)

•  LSST
  • operations requirement gathering
  • parsl
• PEcAn
  • htcondor meeting
  • create RC VM
• Industry
  • check on progress of new hardware
  • extractors per space
• TERRA
  • quarterly report
• NCSA/ISDA
  • PEARC reviews

• BD
  • Sprint tasks
    • BD-CLI update
    • Code review
• CCROP
  • Tool to generate experiment file from template based on user input
  • Other tasks
• JUDEL
  • Apply Tesseract for OCR and newspaper article segmentation

•  BD
  • Worked on BD-CLI update
• CCROP
  • Completed development for tool to generate experiment file from template based on user input
• JUDEL
  • Working on applying Tesseract for OCR and newspaper article segmentation.

• Even tho I read a lot of email while I was out - I still have email to catch up on
• Sprint Updates
• Brown Dog Qtr 1 2018 report - kickoff
•  Get back in a groove and catch up on everything else
• new tablet?

•  BD
  • upgrade to pyclowder2 for meangrey
  • check the silhouette for clusterman – failed to get an answer
  • fix pecan shiny
• GLM
  • ingest USGS 04024000 on dev.
  • add helper text for USGS quality code
• CC
  • new UI
  • initial implement for user session service.

• Finish pycsw extractor by adding geotiff function
• Update docker for pyincore/opensees incore jupyterhub docker
• Update kubernetes with pyincore jupyterlab
• Prepare the COE demo

• Finished pycsw extractor and tested it with docker and clowder
• Updated docker for pyincore, opensees, and other jupyterlab extension
• Updated kubernetes with new jupyter lab
• Tested web mapping on the jupyterlab