• In Process:

working on industry project: data ingestion.

fix and deploy clusterman on dev.

• Under Review:

simple extractor, bd-base develop, greenroute use meter unit.

• Done:

bd-test case for greenness circlearea

• INCORE
  • Data browser and Fragility browser integration in Jupyterlab
  • Retrieve username of the user who's currently using the browsers and feed it to incore service
  • DIN model review (2nd round)
  • Semantic core and service (if have time)
• SMM

• • include crimson hexagon as a data source (backend)
  • adapt output file format to clowder previewer

• Cover Crop
  • Dev meeting, update genotypes for winter wheat
  • Code review
• FarmDoc
  • Dev meeting, task planning
• IN-Core
  • Continue working on v1 demo - building damage analysis, create required datasets
  • Code Review
• General
  • In Champaign Thursday

• Cover Crop
  
  • Code review
  • Updated genotypes for winter wheat and tested
• FarmDoc
  • Task planning
  • Created initial web app repository
• IN-Core
  
  • Worked on v1 demo, updated building damage task with latest APIs
  • Created example tornado json file
  • Code review
• General - workflow meeting

General: Getting back in the swing of things

TERRA:

• Condor prototype
• Fullfield analysis

Whole Tale

• Backup PR

NDS

• CSSI proposal
• PI4 instance?

 TERRA

• Identified issues with fullfield process
• Initial fix for scaling globus-uploader

Whole Tale:

• Submitted PR for backup process

NDS

• Submitted CSSI

 JLESC Meeting - Clowder Presentation

 JLESC Meeting - Clowder Presentation

InCore

• Separated the jupyterlab extensions of fragility and data explorer into two different extensions
• Updated the data viewer in jupyterlab extensions to use react instead of plain javascript. First pass mainly of functionality - No styling.

• KnowEng
  • Combine and refactor common logic between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
  • Redesign phenotype expander and implement it to have logic on data type
    
    • binary data {0,1} or{True,False}
    • data with only two categories
    • data with more than tow categories
  • Investigating issues regarding Signature_Analysis_Pipeline
• In-Core
  • Implement optimized memory version of multiprocessing and added to buildingdamage.py

• KnowEng
  • Combined and refactored common logic between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
  • Redesigned phenotype expander and implement it to have logic on data type
    
    • binary data {0,1} or{True,False}
    • data with only two categories
    • data with more than tow categories
  • Built new docker images for Data_Cleanup_Pipeline
  • Investigated issues regarding Signature_Analysis_Pipeline and working on new logic for phenotype in Signature_Analysis_Pipeline
• In-Core
  • Implemented optimized memory version of multiprocessing and added to buildingdamage.py, currently under review.

• Finalize CSSI proposals
• Backlog of tasks

• CSSIs submitted
• Backlog of tasks

• Clowder 1.4 and 2.0 refactoring
• Geodashboard PRs
• Syngenta meetings and tasks
• SMM Clowder previewer

• GDB/Clowder pull request reviews
• Clowder landing page
• Meetings

•  vbd
  • finish daylight hours for new states
• gltg
  • create deploy v3 branch for pointing to clowder geostreaming api

• NDS
  • Get back into our planning/development cycle
  • Discuss any open CSSI/PI4 concerns
• Crops in Silico
  • Continue collecting feedback and iterate until satisfied
  • Start preparing slides for Spring update meeting
• Industry
  • Ramping up / onboarding

• Industry - Pix4D Extractor (W.I.P.)
• k8s dev setup/test for KnowEnG (W.I.P.)
• KnowEnG Platform AWS Cloudformation

• Industry - Pix4D Extractor
• k8s dev setup/test for KnowEnG (W.I.P.)
• KnowEnG Platform AWS Cloudformation
  

•  PEcAn
  • update VM with LPJ Guess binary
• LSST
  • collect information about operators
• Industry
  • extractors per space
• NCSA/ISDA
  • review PEARC Papers

•  BD
  • Sprint tasks
  • JCDL Abstract
  • Quarterly report
• CCROP
  • Complete modifications on tool for generating experiment file based on user input.
  • Review pull requests
• JUDEL
  • Improve quality of images to get better OCR results using Tesseract
  • Start work on quarterly report
• IARP
  • Start work on final report

•  BD
  • Contributed text for JCDL abstract
  • Reviewed pull requests
• CCROP
  • Completed modifications on tool for generating experiment file based on user input.
• JUDEL
  
  • Working on improving image quality to get better OCR results from Tesseract.
• IARP
  • Started work on final report.

•  BD
  • meangray upgrade to pyclowder2
  • look into silloute on clusterman, it remove the cookie with redeploy, no answer to fix this.
• GLM
  • bin for geostreams-api-v3, copy from clowder.
  • ingest USGS data for one sensor & create config file on V2
• CC
  • use the new design, finish half of it.
  • review exp file PR

• Figure out how to secure the connection to geoserver
• Work on web mapping in jupyterlab
• Update incore jupyterlab docker
• Update kuberenetes with newer docker

• Worked on finding out the method of securing geoserver and clowder but the issue has been transfered to Mike
• Made new jupyterlab instance including newer version of jupyterlab extensions and deployted to kubernetes
• Tested PyCSW extractor in actual docker envrionement.
• Supported incore demo preparation.