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WhoPlanned - MondayAccomplished - Friday
 
  • In Process:

working on industry project: data ingestion.

fix and deploy clusterman on dev.

  • Under Review:

simple extractor, bd-base develop, greenroute use meter unit.

  • Done:

bd-test case for greenness circlearea



  • INCORE
    • Data browser and Fragility browser integration in Jupyterlab
    • Retrieve username of the user who's currently using the browsers and feed it to incore service
    • DIN model review (2nd round)
    • Semantic core and service (if have time)
  • SMM
    • include crimson hexagon as a data source (backend)
    • adapt output file format to clowder previewer

  
  • Cover Crop
    • Dev meeting, update genotypes for winter wheat
    • Code review
  • FarmDoc
    • Dev meeting, task planning
  • IN-Core
    • Continue working on v1 demo - building damage analysis, create required datasets
    • Code Review
  • General
    • In Champaign Thursday
  • Cover Crop
    • Code review
    • Updated genotypes for winter wheat and tested
  • FarmDoc
    • Task planning
    • Created initial web app repository
  • IN-Core
    • Worked on v1 demo, updated building damage task with latest APIs
    • Created example tornado json file
    • Code review
  • General - workflow meeting

General: Getting back in the swing of things

TERRA:

  • Condor prototype
  • Fullfield analysis

Whole Tale

  • Backup PR

NDS

  • CSSI proposal
  • PI4 instance?

 TERRA

  • Identified issues with fullfield process
  • Initial fix for scaling globus-uploader

Whole Tale:

  • Submitted PR for backup process

NDS

  • Submitted CSSI
Gowtham Naraharisetty

  

 JLESC Meeting - Clowder Presentation


  JLESC Meeting - Clowder Presentation

InCore

  • Separated the jupyterlab extensions of fragility and data explorer into two different extensions
  • Updated the data viewer in jupyterlab extensions to use react instead of plain javascript. First pass mainly of functionality - No styling.
  • KnowEng
    • Combine and refactor common logic between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
    • Redesign phenotype expander and implement it to have logic on data type
      • binary data {0,1} or{True,False}
      • data with only two categories
      • data with more than tow categories
    • Investigating issues regarding Signature_Analysis_Pipeline
  • In-Core
    • Implement optimized memory version of multiprocessing and added to buildingdamage.py
 
  • KnowEng
    • Combined and refactored common logic between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
    • Redesigned phenotype expander and implement it to have logic on data type
      • binary data {0,1} or{True,False}
      • data with only two categories
      • data with more than tow categories
    • Built new docker images for Data_Cleanup_Pipeline
    • Investigated issues regarding Signature_Analysis_Pipeline and working on new logic for phenotype in Signature_Analysis_Pipeline
  • In-Core
    • Implemented optimized memory version of multiprocessing and added to buildingdamage.py, currently under review.
  
  • Finalize CSSI proposals
  • Backlog of tasks
  • CSSIs submitted
  • Backlog of tasks
  • Clowder 1.4 and 2.0 refactoring
  • Geodashboard PRs
  • Syngenta meetings and tasks
  • SMM Clowder previewer
  • GDB/Clowder pull request reviews
  • Clowder landing page
  • Meetings
  •  vbd
    • finish daylight hours for new states
  • gltg
    • create deploy v3 branch for pointing to clowder geostreaming api
 
  
  • MDF
    • continue with Read the docs for the Sphinx deployment
    • continue with NDS Workbench and  Forge examples
    • outreach, materials
    • script for FF pipeline
  • Farmdoc
    • Jira
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      Jira
      serverJIRA
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  • VM for the presentation, contact Ms. Lombardo again
 
  • MDF
    • not on Forge
    • yes
    • Chad yes
    • no
  • Farmdoc
    • done and graphs only in the output.
  • presentation prep.
  • NDS
    • Get back into our planning/development cycle
    • Discuss any open CSSI/PI4 concerns
  • Crops in Silico
    • Continue collecting feedback and iterate until satisfied
    • Start preparing slides for Spring update meeting
  • Industry
    • Ramping up / onboarding
  • NDS
    • Revisited after a long absence:
      • Jira
        serverJIRA
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    • Set up Globus Auth demo instance
  • Crops in Silico
    • Discussed upcoming spring demo with PIs
    • Started adding fakeplant example models to UI
  • Industry
    • Learning Scala - made first PR to Clowder
    • Started writing an endpoint for Clowder that will proxy HTTP requests
  • GLTG
    • Jira
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    • Jira
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  • IMLCZO
    • Re-run Parsers for Flux Tower and Allerton non-Decagon
    • Jira
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      keyIMLCZO-226
    • Jira
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  • GLTG
    • Jira
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    • Jira
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      keyGLGVO-422
    • Jira
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    • Jira
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    • Jira
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    • Jira
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  • IMLCZO
    • Re-ran Parsers for Flux Tower and Allerton non-Decagon
    • Jira
      showSummaryfalse
      serverJIRA
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      keyIMLCZO-224
    • Jira
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    • Jira
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      keyIMLCZO-229
  
  • Industry - Pix4D Extractor (W.I.P.)
  • k8s dev setup/test for KnowEnG (W.I.P.)
  • KnowEnG Platform AWS Cloudformation
  • Industry - Pix4D Extractor
  • k8s dev setup/test for KnowEnG (W.I.P.)
  • KnowEnG Platform AWS Cloudformation
  •  PEcAn
    • update VM with LPJ Guess binary
  • LSST
    • collect information about operators
  • Industry
    • extractors per space
  • NCSA/ISDA
    • review PEARC Papers
 
  •  BD
    • Sprint tasks
    • JCDL Abstract
    • Quarterly report
  • CCROP
    • Complete modifications on tool for generating experiment file based on user input.
    • Review pull requests
  • JUDEL
    • Improve quality of images to get better OCR results using Tesseract
    • Start work on quarterly report
  • IARP
    • Start work on final report
  •  BD
    • Contributed text for JCDL abstract
    • Reviewed pull requests
  • CCROP
    • Completed modifications on tool for generating experiment file based on user input.
  • JUDEL
    • Working on improving image quality to get better OCR results from Tesseract.
  • IARP
    • Started work on final report.
 Just sick ... 
  
  •  BD
    • meangray upgrade to pyclowder2
    • look into silloute on clusterman, it remove the cookie with redeploy, no answer to fix this.
  • GLM
    • bin for geostreams-api-v3, copy from clowder.
    • ingest USGS data for one sensor & create config file on V2
  • CC
    • use the new design, finish half of it.
    • review exp file PR
  • Figure out how to secure the connection to geoserver
  • Work on web mapping in jupyterlab
  • Update incore jupyterlab docker
  • Update kuberenetes with newer docker
  • Worked on finding out the method of securing geoserver and clowder but the issue has been transfered to Mike
  • Made new jupyterlab instance including newer version of jupyterlab extensions and deployted to kubernetes
  • Tested PyCSW extractor in actual docker envrionement.
  • Supported incore demo preparation.

...