Scientific
Domain | Tool | Type |
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Description |
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Repositories | Contact | |
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Hydrology
| Advection Diffusion |
Hydrology
Historical RiverSolve a general advection-dispersion equation. | ||||
Chemical Mean Age | Extractor | Determine the mean age of chemical constituents with inputs of chemical dynamics. | ||
Document Tables Extractor (ncsa. |
nlp. |
wordtables) | Extractor |
Extract tables from documents. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
nlp/browse/ |
WordTablesExtractor |
GDAL (ncsa.geo.shpExtractor) |
Extractor |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse | ||
GDAL (ncsa.geo.tiffExtractor) | Extractor |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse | ||
GDAL (ncsa.image.geotiff) |
Extractor |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browse |
Historical River Extractor (ncsa. |
cv. |
river) |
Extractor | Extract the river networks from the ancient hand-drawing maps and compare them with current river networks | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
cv/browse/ |
river |
Normalized Difference Vegetation Index (ncsa.arcgis. |
landsat7mosaic) |
Extractor |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ |
ndviextractor |
pika
requests
wheel
River Chi Index | Extractor | Identify the river dynamics in a river basin and evaluate human activities' influences through Chi index in the streams. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd- |
cz/browse/chi-analysis | ||||
River Sinuosity | Extractor | Study the maturity and equilibrium conditions of a stream through the sinuosity index. | ||
Soil Moisture Change | Extractor | Determine role of hydraulic redistribution in AZ (riparian site / upland site) by studying soil moisture change throughout different seasons. |
Civil & Environmental Engineering
Esther Lee (estherl2010@gmail.com) | ||||
Species Classifier | Extractor | SAM based Species Classification from Hyperspectral data, Hyperspectral Indices, NDVI, SAVI, MSAVI, etc. | Debsunder Dutta (debsunderdutta@gmail.com) leaving in July 2016 | |
TerEx (ncsa.arcgis.floodplain) | Extractor | Identify the flat polygons and the heights inside a river valley. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd- |
cz/browse/ |
Body of Water Detector (ncsa.image.ponddetect)
terex_floodplain | ||||
Topographic Depressions | Extractor | Identify topographic depressions (TDs) and their distribution on landscape (Number, location, area, volume of TDs). | https://github.com/HydroComplexity/TDI | |
Tree Delineation | Converter | Tree-wise voxelization of waveform data for lidar metrics that describes canopy structure (max intensity, height, etc...). Individual tree delineation, tree leaf area density to describe vertical leaf distribution. | https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
BD/repos/ |
ir- |
lidar/browse | ||||
Valley Safety Zones | Extractor | Estimate submerging areas and water depths under extreme floods and map the safety zones in a river valley. | ||
Vegetation Indices | Extractor | Calculating vegetation indices such as NDVI and Surface Temperature from Landsat 7 and 8 satellite data. | Debsunder Dutta (debsunderdutta@gmail.com) leaving in July 2016 | |
Ecology
| netcdf (ncdump) | Converter | Convert from binary netcdf to text. |
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https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
POL/repos/ |
converters- |
ncdump/browse |
ncsa.xml.greenindexroute, ncsa.csv.greenindexroute
PEcAn (PEcAn#Ameriflux) | Converter | Convert Ameriflux data to PEcAn's netcdf CF format. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | |
PEcAn (PEcAn#DALEC) | Converter | Convert PEcAn's netcdf CF format to the format required by the DALEC model. |
https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
POL/repos/ |
converters- |
pecan/browse |
PEcAn (PEcAn#ED2) | Converter | Convert PEcAn's netcdf CF format to the format required by the ED model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | |
PEcAn (PEcAn#LINKAGES) | Converter | Convert PEcAn's netcdf CF format to the format required by the LINKAGES model. |
https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
POL/repos/ |
converters- |
pecan/browse |
ncsa.image.knn_numerals
PEcAn (PEcAn#Sipnet) | Converter | Convert PEcAn's netcdf CF format to the format required by the Sipnet model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | |
PEcAn (PEcAn#AmerifluxBNL) PEcAn (PEcAn#FLUXNET2015) PEcAn (PEcAn#FACE) PEcAn (PEcAn#PALEON) PEcAn (PEcAn#NLDAS) PEcAn (PEcAn#CURNCEP) PEcAn (PEcAn#GLDAS) PEcAn (PEcAn#GFDL) PEcAn (PEcAn#BIOCRO) PEcAn (PEcAn#CLM) PEcAn (PEcAn#GDAY) PEcAn (PEcAn#JULES) PEcAn (PEcAn#LPJ-GUESS) PEcAn (PEcAn#MAAT) PEcAn (PEcAn#MAESPA) PEcAn (PEcAn#PRELES) | ||||
PlantCV (terra.plantcv) | Extractor | Extract plant height, area, and color distribution from photographs. |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
plantcv/browse |
Yan Liu | |
Civil & Environmental Engineering |
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|
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Body of Water Detector (ncsa.image.ponddetect) | Extractor | Land coverage, extract locations of bodies of water from satellite data. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
maps/browse |
/feature_detection | |
GI Identification | Extractor |
Human Preference Score (ncsa.image.humanpref) | Extractor | Assign a model derived human preference score to a given image of an urban environment. |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
maps/browse |
/humanpref | ||
Route Greenness (ncsa.xml.greenindexroute) | Extractor | Derive the green index of a city route. |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
maps/browse/greenroute |
Social Media GI Preferences | Extractor |
Stanford CoreNLP - Sentiment (ncsa.nlp.SNLPSentiment) | Extractor | Assign a sentiment score to a piece of text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
nlp/browse |
/SNLP/SNLPSentimentExtractor |
TUV Triaxus | Extractor |
Social Science & Humanities | Bertillon Card Cell Extractor (ncsa.image.dmp) | Extractor | Extract table cells from a Bertillon Card. | https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
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DEBOD/repos/extractors- |
debod | ||
Census Form Cell Extractor (census-section-segmentor) | Extractor | Extract table cells from a 1930s Census form. |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
cv/browse/ |
census | ||||
Handwritten Decimals Extractor (ncsa.image.sphog.debod) | Extractor | Extract handwritten decimal values from an image. | https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-handwrittendecimals | |
Killed Photos (ncsa.image.iarp_remove_circle) | Extractor | Identify depression era photos "killed" by Farm Security Administration director Roy Stryker, indicated by a hole punch in the image. | https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
IARP/repos/ |
image_fetcher/browse/ |
extractors/remove_circle | Marcus Slavenas | ||
Mean Grey (ncsa.cv.meangrey) | Extractor | Mean grey values of black and white photos. | https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
IARP/repos/ |
image_fetcher/browse/extractors/ |
mean_grey | Marcus Slavenas | ||
Movie Slice (ncsa.movieslice) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
movieslice/browse |
Person Detector ( |
person-detector) |
Extractor | Extract locations of people in an image. |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector |
Person Tracker (ncsa.person-tracker) |
Extractor | Extract locations and paths of people moving in videos. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking |
Video Analytics Toolbox (ncsa.cinemetrics_batch) | Extractor | Extract shot descriptors from videos. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse | |
Biology, Genomics, Medicine | FSL (mri2mesh) | Extractor |
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https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
mri/browse/mri2mesh |
Marcus Slavenas |
Glomeruli (ncsa. |
msc.diagnosis) | Extractor | Extract glomeruli from Kidney biopsy images. |
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
msc/browse/Kidney |
General
Domain | Tool | Type | Description | Repositories | Contact |
---|---|---|---|---|---|
General |
Tool
Calibre (ebook-converter) | Converter | Convert e-books to a number of document formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ebook-convert/browse |
LibreOffice (unoconv) | Converter | Convert to and from a variety of document formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-unoconv/browse | Bing Zhang |
NLTK - |
Summary (ncsa.nlp.simplesummary) | Extractor | Summarize a body of text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummary |
Siegfried ( |
https://opensource.ncsa.illinois.edu/confluence/display/BD/ExtractorsTransformations (Under development, Being Refactored)