Scientific
| Description | SoftwareDescription | Repositories | Contact |
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Hydrology
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| Solve a general advection-dispersion equation. | |
Hydrology
Historical River Extractor (ncsa.cv.river) | Extractor | | OpenCV (python), convert (from imagemagick), and GdalcvriverLiana| |
| GDAL (ncsa.geo.shpExtractor) |
Extractorgdalgdal | Jong |
| GDAL (ncsa.image.geotiff) |
GDAL, Cython, numpy,pygeoprocessingRui, |
| Historical River Extractor (ncsa. |
arcgislandsat7mosaic | | ArcGIS | bd-czndviextractorSmruti | |
| Normalized Difference Vegetation Index (ncsa.arcgis. |
floodplain ArcGIS | terex_floodplain/config.pyBiology | terra.plantcv | | | pika
requests
wheel | plantcv Civil & Environmental Engineering | Stanford CoreNLP Sentiment (ncsa.nlp.SNLPSentiment) | | | Stanford CoreNLP tool, java, maven | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractor | Liana, Marcus(?) |
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Body of Water Detector (ncsa.image.ponddetect) | | | Matlab | |
| River Sinuosity | Extractor | Study the maturity and equilibrium conditions of a stream through the sinuosity index. | | |
| Soil Moisture Change | Extractor | Determine role of hydraulic redistribution in AZ (riparian site / upland site) by studying soil moisture change throughout different seasons. | | |
| Species Classifier | Extractor | SAM based Species Classification from Hyperspectral data, Hyperspectral Indices, NDVI, SAVI, MSAVI, etc. | | |
| TerEx (ncsa.arcgis.floodplain) | Extractor | Identify the flat polygons and the heights inside a river valley. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain | |
| Topographic Depressions | Extractor | Identify topographic depressions (TDs) and their distribution on landscape (Number, location, area, volume of TDs). | https://github.com/HydroComplexity/TDI | |
| Tree Delineation | Converter | Tree-wise voxelization of waveform data for lidar metrics that describes canopy structure (max intensity, height, etc...). Individual tree delineation, tree leaf area density to describe vertical leaf distribution. | https://opensource.ncsa.illinois.edu/bitbucket/projects/BD/repos/ir-lidar/browse | |
| Valley Safety Zones | Extractor | Estimate submerging areas and water depths under extreme floods and map the safety zones in a river valley.
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| Vegetation Indices | Extractor | Calculating vegetation indices such as NDVI and Surface Temperature from Landsat 7 and 8 satellite data. | | |
| Ecology
| netcdf (ncdump) | Converter | Convert from binary netcdf to text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ncdump/browse | |
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| PEcAn (PEcAn#Ameriflux) | Converter | Convert Ameriflux data to PEcAn's netcdf CF format. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | |
| PEcAn (PEcAn#DALEC) | Converter | Convert PEcAn's netcdf CF format to the format required by the DALEC model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | |
| PEcAn (PEcAn#ED2) | Converter | Convert PEcAn's netcdf CF format to the format required by the ED model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | |
| PEcAn (PEcAn#LINKAGES) | Converter | Convert PEcAn's netcdf CF format to the format required by the LINKAGES model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | |
| PEcAn (PEcAn#Sipnet) | Converter | Convert PEcAn's netcdf CF format to the format required by the Sipnet model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | |
PEcAn (PEcAn#AmerifluxBNL) PEcAn (PEcAn#FLUXNET2015) PEcAn (PEcAn#FACE) PEcAn (PEcAn#PALEON) PEcAn (PEcAn#NLDAS) PEcAn (PEcAn#CURNCEP) PEcAn (PEcAn#GLDAS) PEcAn (PEcAn#GFDL) PEcAn (PEcAn#BIOCRO) PEcAn (PEcAn#CLM) PEcAn (PEcAn#GDAY) PEcAn (PEcAn#JULES) PEcAn (PEcAn#LPJ-GUESS) PEcAn (PEcAn#MAAT) PEcAn (PEcAn#MAESPA) PEcAn (PEcAn#PRELES) | | | | |
| PlantCV (terra.plantcv) | Extractor | Extract plant height, area, and color distribution from photographs. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
maps/feature_detectionMarcus, Ankit | Human Preference Score | Yan Liu |
Civil & Environmental Engineering
| Body of Water Detector (ncsa.image. |
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humanpref | | | Extractor | Land coverage, extract locations of bodies of water from satellite data. |
MatlabhumanprefMarcus, Ankit | ncsa.xml.greenindexroute, ncsa.csv.greenindexroute | | | OpenCV | greenroute | census-section-segmentor | Extractor | | | cvcensusLiana, Inna | | ncsa.image.knn_numeralsOpenCV | Marcus | |
| Stanford CoreNLP - Sentiment (ncsa.nlp.SNLPSentiment) | Extractor | Assign a sentiment score to a piece of text. |
| ncsa.nlp.wordtables | | | requests, pika, win32comWordTablesExtractorLiana | | SNLP/SNLPSentimentExtractor | |
| TUV Triaxus | Extractor | | | |
Social Science & Humanities
| Bertillon Card Cell Extractor (ncsa.image.dmp) | Extractor | Extract table cells from a Bertillon Card. |
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| LSVA | | | CATSlsva/browseLiana, Constantinos | | LSVA integrated | | | | -lsvaintegrated | | /census | |
| Handwritten Decimals Extractor (ncsa.image.sphog.debod) | Extractor | Extract handwritten decimal values from an image. |
| ncsa.movieslice | | | CATSmovieslice/browseSandeep | | mri2mesh | | | pymedici, subprocess, logging, os, numpy, shutil, zipfile/CATS/repos-mri/browse/mri2mesh | msc-ChemCBCExtractor | | | requests, pika, openpyxl, xlrd, pymongo/CATS/repos-msc/browse/ChemCBCExtractorYan | | msc-IsletExtractor | | | requests, pika, openpyxl, xlrd, pymongomsc/IsletExtractorYan | | msc-MonitorExtractor | | | requests, pika, openpyxl, xlrd, pymongo-msc/browse/MonitorExtractorYan | | ncsa.msc.dailymonitor | | | requests, pika, openpyxl, xlrd, pymongo-msc/browse/OldMonitorExtractorAshwini | | msc-PhenotypeExtractor | | | requests, pika, openpyxl, xlrd, pymongomsc/PhenotypeExtractorYan | |
| Biology, Genomics, Medicine | FSL (mri2mesh) | Extractor | |
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| person-detector | | | MATLAB, FFMPEG, requests and pikaperson-detectorpythonSandeep | | ncsa.person-tracker | | | python, MATLAB, FFMPEG requests and pikaperson-trackingpythonSandeepGeneral
General
Tool | Type | Description | Repositories | ContactFFMPEG sigfriedhttps://opensource.ncsa.illinois.edu/confluence/display/BD/ExtractorsTransformations (Under development, Being Refactored)