Scientific
DescriptionDescription | Repositories | Contact |
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Deployed? | Solve a general advection-dispersion equation. | |
Hydrology
Historical River Extractor (ncsa.cv.river) | Extractor | | |
| Chemical Mean Age | Extractor | Determine the mean age of chemical constituents with inputs of chemical dynamics. | | |
| Document Tables Extractor (ncsa.nlp.wordtables) | Extractor | Extract tables from documents. | https: |
https:cvriver Extractor |
| GDAL (ncsa.image.geotiff) |
Rui, | |
| Historical River Extractor |
ArcGIS arcgislandsat7mosaic | | Extractor | Extract the river networks from the ancient hand-drawing maps and compare them with current river networks |
bd-czndviextractorSmruti | | |
| Normalized Difference Vegetation Index |
ArcGIS floodplain terex_floodplain/config.py Biology | PEcAn (PEcAn#Ameriflux) | | | POLconverterspecan | | | PEcAn (PEcAn#DALEC) | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | | |
| PEcAn (PEcAn#ED2) | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | | |
PEcAn (PEcAn#LINKAGES) | | | | /chi-analysis | |
| River Sinuosity | Extractor | Study the maturity and equilibrium conditions of a stream through the sinuosity index. | | |
| Soil Moisture Change | Extractor | Determine role of hydraulic redistribution in AZ (riparian site / upland site) by studying soil moisture change throughout different seasons. | | |
| Species Classifier | Extractor | SAM based Species Classification from Hyperspectral data, Hyperspectral Indices, NDVI, SAVI, MSAVI, etc. | | |
| TerEx (ncsa.arcgis.floodplain) | Extractor | Identify the flat polygons and the heights inside a river valley. | https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
POLconverterspecan | | | /terex_floodplain | |
| Topographic Depressions | Extractor | Identify topographic depressions (TDs) and their distribution on landscape (Number, location, area, volume of TDs). |
PEcAn (PEcAn#Sipnet) | | opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | | | github.com/HydroComplexity/TDI | |
| Tree Delineation | Converter | Tree-wise voxelization of waveform data for lidar metrics that describes canopy structure (max intensity, height, etc...). Individual tree delineation, tree leaf area density to describe vertical leaf distribution. |
PlantCV (terra.plantcv) | | CATSextractorsplantcvYan Liu | | | netcdf (ncdump) | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ncdump/browse | | |
Civil & Environmental Engineering | Stanford CoreNLP Sentiment (ncsa.nlp.SNLPSentiment) | | | |
| Valley Safety Zones | Extractor | Estimate submerging areas and water depths under extreme floods and map the safety zones in a river valley.
| | |
| Vegetation Indices | Extractor | Calculating vegetation indices such as NDVI and Surface Temperature from Landsat 7 and 8 satellite data. | | |
| Ecology
| netcdf (ncdump) | Converter | Convert from binary netcdf to text. | https: |
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https:CATSextractorsnlp/SNLP/SNLPSentimentExtractorLiana, Marcus(?) | | | |
| PEcAn (PEcAn#Ameriflux) | Converter | Convert Ameriflux data to PEcAn's netcdf CF format. | https |
Body of Water Detector (ncsa.image.ponddetect) | | | httpsCATSextractorsmaps/feature_detectionMarcus, Ankit | | | Human Preference Score (ncsa.image.humanpref) | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanpref | Marcus, Ankit | |
ncsa.xml.greenindexroute, ncsa.csv.greenindexroute | | | mapsMarcus/greenroute | Yan Liu |
| Civil & Environmental Engineering |
|---|
| census-section-segmentor | Extractor | Body of Water Detector (ncsa.image.ponddetect) | Extractor | Land coverage, extract locations of bodies of water from satellite data. |
cvcensusLiana, Inna | | | ncsa.image.knn_numerals | | ncsa.nlp.wordtables | | | |
| Human Preference Score (ncsa.image.humanpref) | Extractor | Assign a model derived human preference score to a given image of an urban environment. |
nlpWordTablesExtractorLiana | | LSVA | | |
Route Greenness (ncsa.xml.greenindexroute) | Extractor | Derive the green index of a city route. |
lsvaLiana, ConstantinosLSVA integrated | | | |
| Stanford CoreNLP - Sentiment (ncsa.nlp.SNLPSentiment) | Extractor | Assign a sentiment score to a piece of text. |
lsva-integratedSandeep Puthanveetil Satheesan | | | |
Social Science & Humanities
| Bertillon Card Cell Extractor (ncsa.image. |
|---|
movieslice | | Extractor | Extract table cells from a Bertillon Card. |
CATSmovieslice/browse | |
| Census Form Cell Extractor (census-section-segmentor) | Extractor | Extract table cells from a 1930s Census form. |
| mri2mesh | | mrimri2mesh | msc-ChemCBCExtractor | | | Marcus | | |
| Handwritten Decimals Extractor (ncsa.image.sphog.debod) | Extractor | Extract handwritten decimal values from an image. |
CATSmsc/browse/ChemCBCExtractorYan | | | handwrittendecimals | |
| Killed Photos (ncsa.image.iarp_remove_circle) | Extractor | Identify depression era photos "killed" by Farm Security Administration director Roy Stryker, indicated by a hole punch in the image. |
| msc-IsletExtractor | | /CATS/repos-msc/browse/IsletExtractorYan | | | msc-MonitorExtractor | | | CATSextractors-msc/MonitorExtractorYan | | | ncsa.msc.dailymonitor | msc/OldMonitorExtractorAshwini | | | msc-PhenotypeExtractor | | |
| Person Detector (person-detector) | Extractor | Extract locations of people in an image. |
msc/browse/PhenotypeExtractorYan | | | person-detector | | | person-detector | |
| Person Tracker (ncsa.person-tracker) | Extractor | Extract locations and paths of people moving in videos. |
detector/browse/python | |
| Video Analytics Toolbox (ncsa.cinemetrics_batch) | Extractor | Extract shot descriptors from videos. |
| ncsa.person-tracker | | persontracking/python | |
| Biology, Genomics, Medicine | FSL (mri2mesh) | Extractor |
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| lsva-cedd | ceddConstantinos | | | Marcus Slavenas |
| Glomeruli (ncsa.msc.diagnosis) | Extractor | Extract glomeruli from Kidney biopsy images. |
| ncsa.cinemetrics | | cinemetrics/browseConstantinos | | General
General
| Domain | Tool | Type | Description | Repositories | Contact |
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General |
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Tool | Type | Description | Repositories | ContactFFMPEG sigfriedhttps://opensource.ncsa.illinois.edu/confluence/display/BD/ExtractorsTransformations (Under development, Being Refactored)