DescriptionSoftwareDescription | Repositories | Contact |
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ncsa.cv.riverOpenCV (python), convert(from imagemagick), and Gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/river | Liana | | | | | | |
| Advection Diffusion | | Solve a general advection-dispersion equation. | | |
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| Chemical Mean Age | Extractor | Determine the mean age of chemical constituents with inputs of chemical dynamics. | | |
| Document Tables Extractor (ncsa.nlp.wordtables) | Extractor | Extract tables from documents. |
Tool | Description | Software | Repositories | Contact |
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Tesseract (ncsa.image.ocr) | | TesseractcvocrOpenCV Faces cvfacesOpenCVcv/opencv | OpenCV Eyes cveyesOpenCV | cv/opencvLiana | OpenCV Closeups cvcloseupshttpsOpenCV | cv/opencvLiana | OpenCV Profiles | |
| Historical River Extractor (ncsa.cv. |
profiles | | Extractor | Extract the river networks from the ancient hand-drawing maps and compare them with current river networks |
OpenCVopencvLiana | |
| Normalized Difference Vegetation Index (ncsa. |
cellprofiler.fluorescentcomethttps| arcgis.landsat7mosaic) | Extractor | |
pymedici  | cvcellprofilerLiana | |
| River Chi Index | Extractor | Identify the river dynamics in a river basin and evaluate human activities' influences through Chi index in the streams. |
ncsa.cellprofiler.fly | | cvcellprofilerLiana | ncsa.cellprofiler.human | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
ncsa.cellprofiler.silvercomet | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
ncsa.cellprofiler.speckle | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
ncsa.cellprofiler.trackobject | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
ncsa.cellprofiler.tumor | | | | chi-analysis | |
| River Sinuosity | Extractor | Study the maturity and equilibrium conditions of a stream through the sinuosity index. | | |
| Soil Moisture Change | Extractor | Determine role of hydraulic redistribution in AZ (riparian site / upland site) by studying soil moisture change throughout different seasons. | | |
| Species Classifier | Extractor | SAM based Species Classification from Hyperspectral data, Hyperspectral Indices, NDVI, SAVI, MSAVI, etc. | | |
| TerEx (ncsa.arcgis.floodplain) | Extractor | Identify the flat polygons and the heights inside a river valley. | |
cvcellprofilerLiana | ncsa.cellprofiler.yeast | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofiler | Liana |
ncsa.image.sphog | | Matlab, mnist-sphog | CATSextractorscv/handwritten/HandwrittenNumbers | | |
| Valley Safety Zones | Extractor | Estimate submerging areas and water depths under extreme floods and map the safety zones in a river valley.
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| Vegetation Indices | Extractor | Calculating vegetation indices such as NDVI and Surface Temperature from Landsat 7 and 8 satellite data. | | |
| Ecology
| netcdf (ncdump) | Converter | Convert from binary netcdf to text. |
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| | | | |
| ncsa.bisque.histogram (notes: disabled) | | | | |
| ncsa.bisque.metadata (notes: disabled) | | | | |
census-section-segmentor | | CATSextractorscv/censusLiana, Inna | ncsa.geo.shpExtractor | | gdalCATSextractorsgeoJong Lee | |
| PEcAn (PEcAn#DALEC) | Converter | Convert PEcAn's netcdf CF format to the format required by the DALEC model. | https |
ncsa.geo.tiffExtractor | | gdal | httpsCATSextractorsgeoJong Lee | ncsa.image.geotiff | | GDAL, Cython, numpy,
pygeoprocessing | |
| PEcAn (PEcAn#ED2) | Converter | Convert PEcAn's netcdf CF format to the format required by the ED model. | https://opensource |
https://opensourceCATSextractorsgeotiffRui, Mostafa Elag | |
| PEcAn (PEcAn#LINKAGES) | Converter | Convert PEcAn's netcdf CF format to the format required by the LINKAGES model. |
ncsa.image.ponddetect | | MatlabCATSextractorsmaps/feature_detectionMarcus, Ankit | | |
| PEcAn (PEcAn#Sipnet) | Converter | Convert PEcAn's netcdf CF format to the format required by the Sipnet model. |
ncsa.image.humanpref | | MatlabCATSextractorsmaps/humanprefMarcus, Ankit | ncsa.xml.greenindexroute, ncsa.csv.greenindexroute | | OpenCV | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenroute | Marcus |
ncsa.image.knn_numerals | | OpenCV | | Marcus |
ncsa.audio.speech2text | | CMU Sphinx, ffmpeg, sox | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2text | Marcus |
| ncsa.audio.preview | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/preview | |
| ncsa.nlp.simplelanguage | | numpy | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguage | Liana |
| ncsa.nlp.simplesummary | | Natural Language Toolkit (NLTK) for Python, NLTK Data or at least: nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummary | Liana |
| ncsa.nlp.SNLPSentiment | | Stanford CoreNLP tool, java, maven | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractor | Liana, Marcus(?) |
| ncsa.nlp.wordtables | | requests, pika, win32com | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractor | Liana |
| siegfried | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browse | Gregory Jansen |
| ncsa.versus.image | | Versus | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browse | Kenton, Smruti |
ncsa.image.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | | core/image/previewRob, Sandeep | | Yan Liu |
Civil & Environmental Engineering
| Body of Water Detector (ncsa.image.ponddetect) | Extractor | Land coverage, extract locations of bodies of water from satellite data. |
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ncsa.pdf.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | core/browse/pdf/previewRob | | maps/browse/feature_detection | |
| GI Identification | Extractor | | | |
| Human Preference Score (ncsa.image.humanpref) | Extractor | Assign a model derived human preference score to a given image of an urban environment. |
ncsa.video.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | corevideo/previewRob | | humanpref | |
Route Greenness (ncsa.xml.greenindexroute) | Extractor | Derive the green index of a city route. |
| NOT DEPLOYED | | | | |
ncsa.image.digitpy | | opencvcv/browse/handwritten/SimpleDigitPython | ncsa.cv.pdfimages | | pdfimages, from poppler-utilscv/browse/poppler | ncsa.cv.caltech101 | | Matlab and VLFeat CATScv/browse/vlfeat | dbpedia | | Natural Language Toolkit (NLTK) and rdflibdbpedia | |
| Handwritten Decimals Extractor (ncsa.image.sphog.debod) | Extractor | Extract handwritten decimal values from an image. |
digest | | CATSdigest/browse | ncsa.hpc | | | handwrittendecimals | |
| Killed Photos (ncsa.image.iarp_remove_circle) | Extractor | Identify depression era photos "killed" by Farm Security Administration director Roy Stryker, indicated by a hole punch in the image. |
CATS-hpcbrowse | LSVA | | CATSextractors-lsva/browseLiana, Constantinos | LSVA integrated | -lsvaintegratedncsa.movieslice | | | Person Detector (person-detector) | Extractor | Extract locations of people in an image. |
movieslice/browsemri2mesh | | pymedici, subprocess, logging, os, numpy, shutil, zipfilemri/browse/mri2meshMarcus | msc-ChemCBCExtractor | | requests, pika, openpyxl, xlrd, pymongomsc/browse/ChemCBCExtractorYan | msc-IsletExtractor | | requests, pika, openpyxl, xlrd, pymongomscIsletExtractorYan | msc-MonitorExtractor | | requests, pika, openpyxl, xlrd, pymongo/extractors-msc/browse/MonitorExtractorYan | | ncsa.msc.dailymonitor | | requests, pika, openpyxl, xlrd, pymongo | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/OldMonitorExtractor | Ashwini |
| msc-PhenotypeExtractor | | requests, pika, openpyxl, xlrd, pymongo | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/PhenotypeExtractor | Yan |
ncsa.nlp.SNLP | | | Domain | Tool | Type | Description | Repositories | Contact |
|---|
General | Calibre (ebook-converter) | Converter | Convert e-books to a number of document formats. |
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Stanford CoreNLP tool, java, mavenCATSextractorsnlp/SNLP/SNLPExtractorLiananlptika | Tika project page, pymedicinlptikaLiana | person-detector | | MATLAB, FFMPEG, requests and pikaCATSextractorsperson-detector/pythonSandeepperson-tracker | | dbpedia) | Extractor | Find and define named entities within the given text. |
python, MATLAB, FFMPEG requests and pikaperson-tracking/pythonterra.plantcv | | pika
requests
wheel | Sandeep | |
| FFmpeg (ffmpeg) | Converter | Convert between a large number of video formats. |
CATSextractorsplantcvYan | medici_PTM_thumbnails | | |
| FLAC (flac) | Converter | Convert to and from the FLAC format from other audio formats. |
CATSextractorsptm/PTMThumbnailExtractorConstantinos | |
| Ghostscript (ghostscript) | Converter | Convert between document formats. |
medici_PTM_metadata | | CATSextractorsptm/PTMMetadataExtractorConstantinos | Name not clear PtmMetadata(?) | | | |
| htmldoc (htmldoc) | Converter | Convert HTML to a number of document formats. |
CATSextractorsptm/PTMMetadataConstantinos | medici_ptm_maps | | CATSextractorsptm/PTMMapsExtractorConstantinos | medici_ptm_3d | | ptm/PTM3DExtractorConstantinos | medici_images_ptm | | | CATSextractorsptm/ImagesPTMExtractorConstantinosextractorsrabbitmq(look like examples | | Extractor | Find faces in an image and return their locations. |
/extractors-rabbitmq/browse | Name not clear extractors-seabird/ | | seabirdLuigi | medici_3d_x3d (one of extractors-3d) | | 3dObjJSONExtractorConstantinos | medici_3d_obj_merger (one of extractors-3d) | | 3d/OBJMergerExtractorConstantinos | medici_oni (one of extractors-3d) | | 3dOniExtractorConstantinos | medici_ply_obj (one of extractors-3d) | | |
| LibreOffice (unoconv) | Converter | Convert to and from a variety of document formats. |
CATSextractors3d/PlyObjExtractorConstantinos | medici_3d_metadata (one of extractors-3d) | | | Bing Zhang |
| NLTK - Summary (ncsa.nlp.simplesummary) | Extractor | Summarize a body of text. |
3dThreeDMetadataExtractorConstantinos | |
| Siegfried (siegfried) | Extractor | Extract information about a given file relevant to identifying its type and validating its format. |
medici_x3d_html (one of extractors-3d) | | 3d/X3DhtmlExtractorConstantinos | arcgislandsat7mosaic | ArcGISbd-cz/ndviextractorSmruti | ncsa.arcgis.floodplain | | ArcGIS | bd-czterex_floodplain/config.pySmruti | medici_book | | booksBookPreviewExtractorTheerasit Issaranon | medici_image_pyramid | | |
| txt2html (txt2html) | Converter | Convert text documents to HTML. |
CATSextractorsbooks/ImagePreviewPyramidExtractor-shebookTheerasit Issaranon | shebook | | | | Kenton McHenry |
| Versus - Color Distribution (ncsa.versus.image) | Extractor | Generate a distribution of color values within an image to be used for comparing how similar two images are. |
books/browse/SheBookPreviewExtractor/src/BookPreviewExtractor| versus/browse | |
VLFeat (ncsa.image.caltech101) | Extractor | Classify images as to whether they contain objects from the Caltech101 dataset (e.g. people, airplanes, motorcycles, cougars, ...). |
books/SheBookPreviewExtractor/srcbookpreviewextractorTheerasit Issaranon | | lsva-cedd | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cedd/browse | Constantinos |
ncsa.cinemetrics | | CATSextractorscinemetricsConstantinos | ncsa.image.metadata | | | ...
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