Scientific
DescriptionSoftwareDescription | Repositories | Contact |
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ncsa.cv.riverOpenCV(python), convert (from imagemagick), and Gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/river | Liana | | | | | | |
General
| Advection Diffusion | | Solve a general advection-dispersion equation. | | |
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| Chemical Mean Age | Extractor | Determine the mean age of chemical constituents with inputs of chemical dynamics. | | |
| Document Tables Extractor (ncsa.nlp.wordtables) | Extractor | Extract tables from documents. |
Tool | Type | Description | Software | Repositories | Contact |
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Tesseract (ncsa.image.ocr) | Extractor | | TesseractcvocrOpenCV Faces cvfacesOpenCV | cv/opencv | OpenCV Eyes cveyesOpenCV | cv/opencvLiana | OpenCV Closeups cvcloseupsOpenCV | cv/opencvLiana | OpenCV Profiles | |
| Historical River Extractor (ncsa.cv. |
profiles | OpenCV | opencvLiana | VLFeat |
| Normalized Difference Vegetation Index (ncsa. |
imagecaltech101 cvextractors-vlfeatKenton McHenry | | ncsa.bisque.histogram (notes: disabled) | | | | | |
| ncsa.bisque.metadata (notes: disabled) | | | | | |
census-section-segmentor | | | | https://opensource.ncsa.illinois.cvcensusLiana, Inna | | ncsa.geo.shpExtractor | | | gdal | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse | Jong Lee |
| ncsa.geo.tiffExtractor | | | gdal | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse | Jong Lee |
ncsa.image.geotiff | | | GDAL, Cython, numpy,
pygeoprocessing | | chi-analysis | |
| River Sinuosity | Extractor | Study the maturity and equilibrium conditions of a stream through the sinuosity index. | | |
| Soil Moisture Change | Extractor | Determine role of hydraulic redistribution in AZ (riparian site / upland site) by studying soil moisture change throughout different seasons. | | |
| Species Classifier | Extractor | SAM based Species Classification from Hyperspectral data, Hyperspectral Indices, NDVI, SAVI, MSAVI, etc. | | |
| TerEx (ncsa.arcgis.floodplain) | Extractor | Identify the flat polygons and the heights inside a river valley. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
geotiffRui, Mostafa Elag | ncsa.image.ponddetect | | | Matlab | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detection | Marcus, Ankit |
ncsa.image.humanpref | | | | /terex_floodplain | |
| Topographic Depressions | Extractor | Identify topographic depressions (TDs) and their distribution on landscape (Number, location, area, volume of TDs). |
Matlabopensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanprefMarcus, Ankit | ncsa.xml.greenindexroute, ncsa.csv.greenindexroute | | | OpenCV | | github.com/HydroComplexity/TDI | |
| Tree Delineation | Converter | Tree-wise voxelization of waveform data for lidar metrics that describes canopy structure (max intensity, height, etc...). Individual tree delineation, tree leaf area density to describe vertical leaf distribution. | https:// |
https://CATSextractorsmaps/greenrouteMarcus | ncsa.image.knn_numerals | | | OpenCV | | Marcus |
ncsa.audio.speech2text | | | CMU Sphinx, ffmpeg, sox | | |
| Valley Safety Zones | Extractor | Estimate submerging areas and water depths under extreme floods and map the safety zones in a river valley.
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| Vegetation Indices | Extractor | Calculating vegetation indices such as NDVI and Surface Temperature from Landsat 7 and 8 satellite data. | | |
| Ecology
| netcdf (ncdump) | Converter | Convert from binary netcdf to text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
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CATSextractorscore/audio/speech2textMarcus | ncsa.nlp.simplelanguage | | | numpy | | |
| PEcAn (PEcAn#Ameriflux) | Converter | Convert Ameriflux data to PEcAn's netcdf CF format. |
CATSextractorsnlp/SimpleLanguageLiana | ncsa.nlp.simplesummary | | | Natural Language Toolkit (NLTK) for Python, NLTK Data or at least:
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| PEcAn (PEcAn#DALEC) | Converter | Convert PEcAn's netcdf CF format to the format required by the DALEC model. |
nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt.CATSextractorsnlp/SimpleSummaryLiana | ncsa.nlp.SNLPSentiment | | | Stanford CoreNLP tool, java, mavenCATSextractorsnlp/SNLP/SNLPSentimentExtractorLiana, Marcus(?) | ncsa.nlp.wordtables | | | requests, pika, win32comCATSextractorsnlp/browse/WordTablesExtractorLiana | siegfriedsiegfriedGregory Jansen | ncsa.versus.image | | | Versus | versusKenton, Smruti | ncsa.image.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | | | coreimage/previewRob, Sandeep | | humanpref | |
Route Greenness (ncsa.xml.greenindexroute) | Extractor | Derive the green index of a city route. |
ncsa.pdf.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | | core/browse/pdf/previewRob | ncsa.video.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | | | corevideo/previewRob | NOT DEPLOYED | | |
Social Science & Humanities
| Bertillon Card Cell Extractor (ncsa.image. |
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digitpy | | opencv | CATS/extractors-cv/browse/handwritten/SimpleDigitPython | ncsa.cv.pdfimages | | | pdfimages, from poppler-utils | popplerncsa.cv.caltech101 | | | Matlab and VLFeat | | |
| Handwritten Decimals Extractor (ncsa.image.sphog.debod) | Extractor | Extract handwritten decimal values from an image. |
CATScv/browse/vlfeat | dbpedia | | | Natural Language Toolkit (NLTK) and rdflibCATS-dbpedia/browse | digest | | | CATSextractors-digest/browse | ncsa.hpc | | hpcLSVA | | | | Person Detector (person-detector) | Extractor | Extract locations of people in an image. |
lsva/browseLiana, Constantinos | LSVA integrated | | | | lsvaintegrated/browsemovieslice | | | cinemetrics_batch) | Extractor | Extract shot descriptors from videos. |
movieslice pymedici, subprocess, logging, os, numpy, shutil, zipfilemsc-ChemCBCExtractor | | | requests, pika, openpyxl, xlrd, pymongoChemCBCExtractormsc-IsletExtractorGeneral
| Domain | Tool | Type | Description | Repositories | Contact |
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requests, pika, openpyxl, xlrd, pymongo | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/IsletExtractor | Yan | msc-MonitorExtractorrequests, pika, openpyxl, xlrd, pymongo | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/MonitorExtractor | Yan | ncsa.msc.dailymonitor | | | General | Calibre (ebook-converter) | Converter | Convert e-books to a number of document formats. |
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requests, pika, openpyxl, xlrd, pymongoCATSextractorsmsc/OldMonitorExtractormsc-PhenotypeExtractor | | | requests, pika, openpyxl, xlrd, pymongo | Ashwini | | |
CMU Sphinx (ncsa.audio.speech2text) | Extractor | Audio recognition to extract text for speech within audio. |
mscPhenotypeExtractorYan | ncsa.nlp.SNLP | | | | speech2text | |
| Daffodil (daffodil) | Converter | Convert formats with a provided DFDL schema to XML. |
Stanford CoreNLP tool, java, mavenCATSextractorsnlp/SNLP/SNLPExtractorLiana | ncsa.nlp.tika | | | Tika project page, pymedici | nlp/tikaLiana | person-detector | | | MATLAB, FFMPEG, requests and pika | CATSextractorsperson-detector/pythonSandeep | ncsa.person-tracker | | | |
| FLAC (flac) | Converter | Convert to and from the FLAC format from other audio formats. |
python, MATLAB, FFMPEG requests and pikaCATSextractorsperson-tracking/pythonSandeep | |
| Ghostscript (ghostscript) | Converter | Convert between document formats. |
terra.plantcv | | | pikarequestswheelCATSextractorsplantcvYan | medici_PTM_thumbnails | | | | CATSextractorsptm/PTMThumbnailExtractorConstantinos | medici_PTM_metadata | | | CATSextractorsptm/PTMMetadataExtractorConstantinos | Name not clear PtmMetadata(?) | | | | ptmPTMMetadataConstantinos | |
| Kabeja (kabeja) | Converter | Convert between a handful of 3D and image formats. |
medici_ptm_maps | | | CATSextractorsptm/PTMMapsExtractorConstantinos | | |
OpenCV - Faces (ncsa.cv.faces) | Extractor | Find faces in an image and return their locations. |
medici_ptm_3d | | | ptmPTM3DExtractorConstantinos | medici_images_ptm | | | ptm/ImagesPTMExtractorConstantinos | extractors-rabbitmq (look like examples) | | | rabbitmq/browse | Name not clear extractors-seabird/ | | | seabird/browseLuigi | medici_3d_x3d (one of extractors-3d) | | | 3dObjJSONExtractorConstantinos | medici_3d_obj_merger (one of extractors-3d) | | | | CATSextractors3d/OBJMergerExtractorConstantinos | | Bing Zhang |
| NLTK - Summary (ncsa.nlp.simplesummary) | Extractor | Summarize a body of text. |
medici_oni (one of extractors-3d) | | | 3dOniExtractorConstantinos | medici_ply_obj (one of extractors-3d) | | | | SimpleSummary | |
| Siegfried (siegfried) | Extractor | Extract information about a given file relevant to identifying its type and validating its format. |
3d/PlyObjExtractorConstantinos | medici_3d_metadata (one of extractors-3d) | | | |
| Stanford CoreNLP (ncsa.nlp.SNLP) | Extractor | Natural Language Process extractions such as parts of speech, named entities, langauge, etc. |
3dThreeDMetadataExtractorConstantinos | | |
| Tesseract (ncsa.image.ocr) | Extractor | Object Character Recognition (OCR) to extract text from images containing text. |
medici_x3d_html (one of extractors-3d) | | | 3dX3DhtmlExtractorConstantinos | arcgislandsat7mosaic | | ArcGIS | bd-czndviextractorSmruti | ncsa.arcgis.floodplain | | | |
| txt2html (txt2html) | Converter | Convert text documents to HTML. |
ArcGISCATSextractorslsva-cedd | | | | bd-cz/browse/terex_floodplain/config.pySmruti | | txt2html/browse | Kenton McHenry |
| Versus - Color Distribution (ncsa.versus.image) | Extractor | Generate a distribution of color values within an image to be used for comparing how similar two images are. |
ceddConstantinos | |
VLFeat (ncsa.image.caltech101) | Extractor | Classify images as to whether they contain objects from the Caltech101 dataset (e.g. people, airplanes, motorcycles, cougars, ...). |
ncsa.cinemetrics | | | cinemetricsConstantinos | ncsa.image.metadata | | | CATSextractorscore/image/metadataMax. Robhttps://opensource.ncsa.illinois.edu/confluence/display/BD/ExtractorsTransformations (Under development, Being Refactored)