Scientific
| Domain | Tool | Type |
|---|
Description | Repositories | Contact |
|---|
| Hydrology
|
|---|
| Advection Diffusion |
| Solve a general advection-dispersion equation. |
Hydrology
| Chemical Mean Age | Extractor | Determine the mean age of chemical constituents with inputs of chemical dynamics. | ||
| Document Tables Extractor (ncsa.nlp.wordtables) | Extractor | Extract tables from documents. | https: |
| //opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| nlp/browse/ |
| WordTablesExtractor |
| GDAL (ncsa.geo.shpExtractor) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse |
| GDAL (ncsa.geo.tiffExtractor) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse |
| GDAL (ncsa.image.geotiff) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browse |
| Historical River Extractor (ncsa. |
| cv. |
| river) | Extractor |
| Extract the river networks from the ancient hand-drawing maps and compare them with current river networks | https |
| ://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| cv/browse/ |
| river |
| Normalized Difference Vegetation Index |
| (ncsa.arcgis. |
| landsat7mosaic) | Extractor |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ |
Biology
| ndviextractor |
| River Chi Index | Extractor | Identify the river dynamics in a river basin and evaluate human activities' influences through Chi index in the streams. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
| CATS/repos/ |
| extractors-bd- |
| cz/browse |
| /chi-analysis | ||||
| River Sinuosity | Extractor | Study the maturity and equilibrium conditions of a stream through the sinuosity index. | ||
| Soil Moisture Change | Extractor | Determine role of hydraulic redistribution in AZ (riparian site / upland site) by studying soil moisture change throughout different seasons. | Esther Lee (estherl2010@gmail.com) | |
| Species Classifier | Extractor | SAM based Species Classification from Hyperspectral data, Hyperspectral Indices, NDVI, SAVI, MSAVI, etc. | Debsunder Dutta (debsunderdutta@gmail.com) leaving in July 2016 | |
| TerEx (ncsa.arcgis.floodplain) | Extractor | Identify the flat polygons and the heights inside a river valley. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain | |
| Topographic Depressions | Extractor | Identify topographic depressions (TDs) and their distribution on landscape (Number, location, area, volume of TDs). | https://github.com/HydroComplexity/TDI | |
| Tree Delineation | Converter | Tree-wise voxelization of waveform data for lidar metrics that describes canopy structure (max intensity, height, etc...). Individual tree delineation, tree leaf area density to describe vertical leaf distribution. | https://opensource.ncsa.illinois.edu/bitbucket/projects/BD/repos/ir-lidar/browse | |
| Valley Safety Zones | Extractor | Estimate submerging areas and water depths under extreme floods and map the safety zones in a river valley. | ||
| Vegetation Indices | Extractor | Calculating vegetation indices such as NDVI and Surface Temperature from Landsat 7 and 8 satellite data. | Debsunder Dutta (debsunderdutta@gmail.com) leaving in July 2016 | |
| Ecology
| netcdf (ncdump) | Converter | Convert from binary netcdf to text. |
|---|
| https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters- |
| ncdump/browse |
| PEcAn ( |
| PEcAn#Ameriflux) | Converter |
| Convert Ameriflux data to PEcAn's netcdf CF format. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse |
| PEcAn (PEcAn#DALEC) |
| Converter | Convert PEcAn's netcdf CF format to the format required by the DALEC model. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
| POL/repos/ |
| converters- |
| pecan/browse |
| PEcAn (PEcAn#ED2 |
| ) | Converter |
| Convert PEcAn's netcdf CF format to the format required by the ED model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters- |
| pecan/browse |
Civil & Environmental Engineering
| PEcAn (PEcAn#LINKAGES) | Converter | Convert PEcAn's netcdf CF format to the format required by the LINKAGES model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
| POL/repos/ |
| converters- |
| pecan/browse |
Body of Water Detector (ncsa.image.ponddetect)
| PEcAn (PEcAn#Sipnet) | Converter | Convert PEcAn's netcdf CF format to the format required by the Sipnet model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
| POL/repos/ |
| converters- |
| pecan/browse | ||||
PEcAn (PEcAn#AmerifluxBNL) PEcAn (PEcAn#FLUXNET2015) PEcAn (PEcAn#FACE) PEcAn (PEcAn#PALEON) PEcAn (PEcAn#NLDAS) PEcAn (PEcAn#CURNCEP) PEcAn (PEcAn#GLDAS) PEcAn (PEcAn#GFDL) PEcAn (PEcAn#BIOCRO) PEcAn (PEcAn#CLM) PEcAn (PEcAn#GDAY) PEcAn (PEcAn#JULES) PEcAn (PEcAn#LPJ-GUESS) PEcAn (PEcAn#MAAT) PEcAn (PEcAn#MAESPA) PEcAn (PEcAn#PRELES) | ||||
| PlantCV (terra.plantcv) | Extractor | Extract plant height, area, and color distribution from photographs. |
Route Greenness (ncsa.xml.greenindexroute)
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| plantcv/browse |
| Yan Liu |
| Civil & Environmental Engineering |
|---|
| Body of Water Detector (ncsa.image. |
|---|
ponddetect) | Extractor | Land coverage, extract locations of bodies of water from satellite data. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| maps/browse/ |
| feature_detection | |||
| GI Identification | Extractor |
| Human Preference Score (ncsa.image.humanpref) | Extractor | Assign a model derived human preference score to a given image of an urban environment. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| maps/browse/ |
| humanpref | ||
Route Greenness (ncsa.xml.greenindexroute) | Extractor | Derive the green index of a city route. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| maps/browse |
| /greenroute | |||
| Social Media GI Preferences | Extractor |
| Stanford CoreNLP - Sentiment (ncsa.nlp.SNLPSentiment) | Extractor | Assign a sentiment score to a piece of text. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| nlp/browse |
| /SNLP/SNLPSentimentExtractor | |
| TUV Triaxus | Extractor |
| Social Science & Humanities | Bertillon Card Cell Extractor (ncsa.image.dmp) | Extractor | Extract table cells from a Bertillon Card. |
|---|
| https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
| DEBOD/repos/extractors- |
| debod |
| Census Form Cell Extractor (census-section-segmentor) | Extractor | Extract table cells from a 1930s Census form. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| cv/browse/ |
| census |
| Handwritten Decimals Extractor (ncsa.image.sphog.debod) | Extractor | Extract handwritten decimal values from an image. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
| DEBOD/repos/extractors- |
| handwrittendecimals | ||
| Killed Photos (ncsa.image.iarp_remove_circle) | Extractor | Identify depression era photos "killed" by Farm Security Administration director Roy Stryker, indicated by a hole punch in the image. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
| IARP/repos/ |
| image_fetcher/browse |
| /extractors/remove_circle | Marcus Slavenas | |
| Mean Grey (ncsa.cv.meangrey) | Extractor | Mean grey values of black and white photos. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/ |
| IARP/repos/ |
| image_fetcher/browse/ |
| extractors/mean_grey | Marcus Slavenas |
| Movie Slice (ncsa.movieslice) | Extractor |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| movieslice/browse |
| Person Detector (person-detector) | Extractor | Extract locations of people in an image. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors |
| -person-detector | ||
| Person Tracker (ncsa.person-tracker) | Extractor | Extract locations and paths of people moving in videos. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person- |
| tracking |
| Video Analytics Toolbox (ncsa.cinemetrics_batch) | Extractor | Extract shot descriptors from videos. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| lsva- |
| integrated/browse |
| Biology, Genomics, Medicine | FSL (mri2mesh) | Extractor |
|---|
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| mri/browse/mri2mesh |
| Marcus Slavenas | ||
| Glomeruli (ncsa.msc.diagnosis) | Extractor | Extract glomeruli from Kidney biopsy images. |
| https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors- |
| msc/browse |
| /Kidney |
General
| Domain | Tool | Type |
|---|
| Description | Repositories | Contact |
|---|
General | Calibre (ebook-converter) | Converter | Convert e-books to a number of document formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ebook-convert/browse |
|---|
CMU Sphinx (ncsa.audio.speech2text) | Extractor | Audio recognition to extract text for speech within audio. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2text |
| Daffodil (daffodil) | Converter | Convert formats with a provided DFDL schema to XML. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-daffodil/browse | Kenton McHenry |
| DBPedia (ncsa.dbpedia) | Extractor | Find and define named entities within the given text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browse |
| FFmpeg(ffmpeg) | Converter | Convert between a large number of video formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ffmpeg/browse |
| FLAC (flac) | Converter | Convert to and from the FLAC format from other audio formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-flac/browse |
| Ghostscript (ghostscript) | Converter | Convert between document formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ghostscript/browse |
| htmldoc (htmldoc) | Converter | Convert HTML to a number of document formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-htmldoc/browse | Kenton McHenry |
| ImageMagick (ImageMagick) | Converter | Convert between a large number of image formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-imagemagick/browse | Kenton McHenry |
| ImageMagick (ncsa.image.metadata) | Extractor | Pull available EXIF image metadata from a given image. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metadata |
| Kabeja (kabeja) | Converter | Convert between a handful of 3D and image formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-kabeja/browse |
OpenCV - Faces (ncsa.cv.faces) | Extractor | Find faces in an image and return their locations. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-faces | Kenton McHenry |
OpenCV - Eyes (ncsa.cv.eyes) | Extractor | Find eyes in an image and return their locations. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-eyes | Kenton McHenry |
OpenCV - Closeups (ncsa.cv.closeups) | Extractor | Determine whether an image is a closeup of a person or not. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-closeups | Kenton McHenry |
OpenCV - Profiles (ncsa.cv.profiles) | Extractor | Find human face profiles in an image and return their locations. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-profiles | Kenton McHenry |
| Langid (ncsa.nlp.simplelanguage) | Extractor | Identify the language of the given text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguage |
| LibreOffice (unoconv) | Converter | Convert to and from a variety of document formats. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-unoconv/browse |
| Bing Zhang |
| NLTK - Summary (ncsa.nlp.simplesummary) | Extractor | Summarize a body of text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummary |
| Siegfried ( |
| siegfried) | Extractor | Extract information about a given file relevant to identifying its type and validating its format. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browse |
| Stanford CoreNLP (ncsa.nlp.SNLP) | Extractor | Natural Language Process extractions such as parts of speech, named entities, langauge, etc. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPExtractor |
| Tesseract (ncsa.image.ocr) | Extractor | Object Character Recognition (OCR) to extract text from images containing text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-tesseract | Kenton McHenry |
| Tika (ncsa.nlp.tika) | Extractor | Document extractions such as language identification, ... | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/tika |
| txt2html (txt2html) | Converter | Convert text documents to HTML. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-txt2html/browse | Kenton McHenry |
| Versus - Color Distribution (ncsa.versus.image) | Extractor | Generate a distribution of color values within an image to be used for comparing how similar two images are. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browse |
VLFeat (ncsa.image.caltech101) | Extractor | Classify images as to whether they contain objects from the Caltech101 dataset (e.g. people, airplanes, motorcycles, cougars, ...). | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-vlfeat | Kenton McHenry |
| Zip (zip) | Converter | Unzip zip archives. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-zip/browse |
https://opensource.ncsa.illinois.edu/confluence/display/BD/ExtractorsTransformations (Under development, Being Refactored)