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Tool

DescriptionSoftwareRepositoriesContact
Tesseract (ncsa.image.ocr) Tesseracthttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/ocr 

OpenCV Faces (

ID (Extractor Name from config file,

same as queue name)

Programming

Language

SoftwareOSCan be Dockerized?Can be upload to Docker Hub ?Assigned ToLink to repoWho wrote or worked on the codeDEPLOYED        ncsa.image.ocrPythonTesseractLinux  Ruiocr 

ncsa.cv.faces)

Python
 OpenCV
Linux  Rui
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv
Liana
 

OpenCV Eyes (ncsa.cv.eyes)

Python
 OpenCV
Linux
  Rui
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

OpenCV Closeups (ncsa.cv.

closeupsPythonOpenCVLinuxRui

closeups)

 
 
OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

OpenCV Profiles (ncsa.cv.profiles)

Python
 OpenCV
Linux
  Rui
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cellprofiler.fluorescentcomet

Python
 pymedici (question)
WindowsNo  
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.fly

Python WindowsNo

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.human

Python WindowsNo

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.silvercomet

Python WindowsNo
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.

specklePython WindowsNo

speckle

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.trackobject

Python WindowsNo

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.tumor

Python

 
Windows
No 
 https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.yeast

Python

 
Windows
No 
 https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.image.sphog

Python
  Matlab, mnist-sphog
 Linux 
 
Gregory Jansen
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/HandwrittenNumbers 
  • ncsa.image.caltech101
   
  
Gregory Jansen
  
ncsa.bisque.histogram (notes: disabled)
Python Linux 
    
ncsa.bisque.metadata (notes: disabled)
Python Linux 
    
census-section-segmentor
Java Linux
  
Sandeep Puthanveetil Satheesan
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/censusLiana, Inna
ncsa.cv.river
 Python
 OpenCV (python), convert (from imagemagick), and Gdal
Linux
  
Smruti Padhy
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/riverLiana
ncsa.geo.shpExtractor
Python
 gdal
Linux  Jong Lee
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.geo.tiffExtractor
Python
 gdal
Linux  Jong Lee
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.image.geotiff
Python
 

GDAL, Cython, numpy,
pygeoprocessing

Linux  Rui
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browseRui, Mostafa Elag

ncsa.image.ponddetect

PythonMatlabLinux 

 
Marcus Slavenas
Matlabhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detectionMarcus, Ankit
ncsa.image.humanpref
Python
 Matlab
Linux  Marcus Slavenas
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanprefMarcus, Ankit

ncsa.xml.greenindexroute, ncsa.csv.greenindexroute

Python
 OpenCV
Linux  
Marcus Slavenas
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenrouteMarcus

ncsa.image.knn_numerals

Python
 OpenCV
Linux  Marcus Slavenas
 Marcus

ncsa.audio.speech2text

Java
 CMU Sphinx, ffmpeg, sox
Linux  Marcus Slavenas
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2textMarcus
ncsa.audio.preview
Python  
  
Inna
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/preview 
ncsa.nlp.simplelanguage
Pythonnumpy  
 
Inna
numpyhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguageLiana
ncsa.nlp.simplesummary
Python
 

Natural Language Toolkit (NLTK) for Python, NLTK Data or at least:

 nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt.

   Gregory Jansen

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummaryLiana
ncsa.nlp.SNLPSentiment
Java
  Stanford CoreNLP tool, java, maven
   
Marcus Slavenas
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractorLiana, Marcus(?)
ncsa.nlp.wordtables
Python
  requests, pika, win32com
    
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractorLiana
siegfried
Python   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browseGregory Jansen
ncsa.versus.image
Java
 Versus
Linux
  
Smruti Padhy
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browseKenton, Smruti
ncsa.image.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name
.)Python   
.)  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/previewRob, Sandeep
ncsa.pdf.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)
Python   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/pdf/previewRob
ncsa.video.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)
Python 
  
  
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/video/previewRob
            
     
     
     
NOT DEPLOYED
 
    
   
ncsa.image.digitpy
Python
 opencv
    
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/SimpleDigitPython 
ncsa.cv.pdfimages pdfimages, from poppler-utils
    
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/poppler 
ncsa.cv.caltech101
Python
 Matlab and VLFeat 
64-bit Mac OS 
   
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/vlfeat 
dbpedia
Python
  Natural Language Toolkit (NLTK) and rdflib.
   Luigi Marini
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browse
Luigi Marini
digest
Python   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-digest/browse 
ncsa.hpc
Python  
  
 
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-hpc/browse
Sandeep Puthanveetil Satheesan
LSVA
Java  
  
 
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva/browseLiana, Constantinos
LSVA integrated
   
  
Sandeep Puthanveetil Satheesan
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse
Sandeep Puthanveetil Satheesan
ncsa.movieslice
Python   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-movieslice/browseSandeep
mri2mesh
Python
 pymedici, subprocess, logging, os, numpy, shutil, zipfile
    
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mri/browse/mri2meshMarcus
msc-ChemCBCExtractor
Python
 requests, pika, openpyxl, xlrd, pymongo
Linux  Yan Zhao
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/ChemCBCExtractorYan
msc-IsletExtractor
Python
 requests, pika, openpyxl, xlrd, pymongo
Linux   Yan Zhao 
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/IsletExtractorYan
msc-MonitorExtractor
Python
 requests, pika, openpyxl, xlrd, pymongo
Linux  
 Yan Zhao 
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/MonitorExtractorYan
ncsa.msc.dailymonitor
Python
 requests, pika, openpyxl, xlrd, pymongo
   not used
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/OldMonitorExtractorAshwini
msc-PhenotypeExtractor
Python
 

requests, pika, openpyxl, xlrd, pymongo

Linux 

 
 Yan Zhao 
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/PhenotypeExtractorYan
ncsa.nlp.SNLP
Java
  Stanford CoreNLP tool, java, maven
    
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPExtractorLiana
ncsa.nlp.tika
Python
  Tika project page, pymedici
   Kenton McHenry
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/tikaLiana
person-detector
Python
  MATLAB, FFMPEG, requests and pika
 
   
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector/browse/pythonSandeep
ncsa.person-tracker
Python
 python, MATLAB, FFMPEG requests and pika
    
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking/browse/pythonSandeep
terra.plantcv
Python
 

pika
requests
wheel

    

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcv/browseYan
medici_PTM_thumbnails
Java 
  
  
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMThumbnailExtractorConstantinos
medici_PTM_metadata
Java 
  
  
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataExtractorConstantinos

Name not clear

PtmMetadata(?)

Java   

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataConstantinos
medici_ptm_maps
Java   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMapsExtractorConstantinos
medici_ptm_3d
Java 
  
  
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTM3DExtractorConstantinos
medici_images_ptmJava  
medici_images_ptm
 
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/ImagesPTMExtractorConstantinos

extractors-rabbitmq

(look like examples)

    

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-rabbitmq/browse 
Name not clear extractors-seabird/
Scala   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-seabird/browseLuigi
medici_3d_x3d (one of extractors-3d)
Java   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ObjJSONExtractorConstantinos
medici_3d_obj_merger (one of extractors-3d)
Java   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OBJMergerExtractorConstantinos
medici_oni (one of extractors-3d)
Java   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OniExtractorConstantinos
medici_ply_obj (one of extractors-3d)
Java   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/PlyObjExtractorConstantinos
medici_3d_metadata (one of extractors
-3d) Java  Java  
-3d)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ThreeDMetadataExtractorConstantinos
medici_x3d_html (one of extractors-3d)
 
   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/X3DhtmlExtractorConstantinos
ncsa.arcgis.landsat7mosaic
Python
 ArcGIS
WindowsNo 
Smruti Padhy
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextractorSmruti
ncsa.arcgis.floodplain
Python
 ArcGIS
WindowsNo Smruti Padhy 
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain/config.pySmruti
medici_book
Java   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/BookPreviewExtractorTheerasit Issaranon
medici_image_pyramid
Java   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/ImagePreviewPyramidExtractor-shebookTheerasit Issaranon
shebookJava  
shebook
 
  

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/SheBookPreviewExtractor/src/BookPreviewExtractor

 

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/SheBookPreviewExtractor/src/bookpreviewextractor

Theerasit Issaranon
lsva-cedd
Java   
  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cedd/browseConstantinos
ncsa.cinemetrics
Python  
  
 
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cinemetrics/browseConstantinos
ncsa.image.metadata
Python  
  
 
https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metadataMax. Rob