cellprofiler.fluorescentcometimage.caltech101) | Extractor | |
pymedici cellprofilerLianacellprofiler.flybisque.histogram (notes: disabled) | | | | | |
https://opensource.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana | ncsa.cellprofiler.human | bisque.metadata (notes: disabled) | | | | | |
census-section-segmentor | |
cellprofilercellprofilersilvercometcv/cellprofilerLianacellprofilerspecklecv/cellprofilerLianacellprofilertrackobjectcv/cellprofilerLianacellprofilertumorcvcellprofilerLianacellprofileryeastcvcellprofilerLiana.image.sphog.xml.greenindexroute, ncsa.csv.greenindexroute | | |
Matlab, mnist-sphog cvhandwritten/HandwrittenNumbers caltech101 bisque.histogram (notes: disabled)ncsa.bisque.metadata (notes: disabled) | | | | |
census-section-segmentor | | | | | cvcensusLiana, InnageoshpExtractorgdalgeoJong LeegeotiffExtractorgdalgeoJong LeeimagegeotiffGDAL, Cython, numpy, pygeoprocessing | geotiffRui, Mostafa ElagimageponddetectMatlabmapsfeature_detectionMarcus, Ankit | ncsa.image.humanprefMatlabmaps/humanprefMarcus, Ankitxml.greenindexroute, ncsa.csv.greenindexrouteOpenCVmaps/greenrouteMarcusKenton, Smruti |
ncsa.image. |
knn_numerals | OpenCV | | Marcus | preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | | |
ncsa.audio.speech2text | | CMU Sphinx, ffmpeg, soxaudiospeech2textMarcusaudioaudio nlp.simplelanguage | numpy | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguage | Liana | ncsa.nlp.simplesummary | | Natural Language Toolkit (NLTK) for Python, NLTK Data or at least: nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummary | Liana |
ncsa.nlp.SNLPSentiment | | Stanford CoreNLP tool, java, maven | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractor | Liana, Marcus(?) |
ncsa.nlp.wordtables | | requests, pika, win32com | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractor | Liana |
siegfried | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browse | Gregory Jansen |
ncsa.versus.image | | Versus | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browse | Kenton, Smruti |
ncsa.image.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/preview | Rob, Sandeep |
ncsa.pdf.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/pdf/preview | Rob |
ncsa.video.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/video/preview | Rob |
NOT DEPLOYED | | | | |
ncsa.image.digitpy | | opencv | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/SimpleDigitPython | |
ncsa.cv.pdfimages | | pdfimages, from poppler-utils | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/poppler | |
ncsa.cv.caltech101 | | Matlab and VLFeatvideo.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.) | | |
cvvlfeatdbpediaNatural Language Toolkit (NLTK) and rdflib.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browse | | digestdigesthpchpc | LSVAlsvaLiana, Constantinos | LSVA integratedlsva-integrated | ncsa.movieslicemoviesliceSandeepmri2meshpymedici, subprocess, logging, os, numpy, shutil, zipfilemri/mri2meshMarcus | msc-ChemCBCExtractorrequests,pika, openpyxl, xlrd, pymongomsc/ChemCBCExtractorYan | msc-IsletExtractor | | requests, pika, openpyxl, xlrd, pymongomsc/IsletExtractorYan | msc-MonitorExtractor | | requests, pika, openpyxl, xlrd, pymongomsc/MonitorExtractorYan | ncsa.msc.dailymonitorrequests, pika, openpyxl, xlrd, pymongomscOldMonitorExtractorAshwiniPhenotypeExtractorChemCBCExtractor | | | requests, pika, openpyxl, |
xlrdPhenotypeExtractorncsa.nlp.SNLPStanford CoreNLP tool, java, mavennlpSNLP/SNLPExtractorLiana | ncsa.nlp.tikaTika project page, pymedicinlptikaLiana | person-detector MATLAB, FFMPEG, requests and pikaperson-detectorpythonSandeepncsa.person-trackerpython, MATLAB, FFMPEG requests and pikaperson-trackingpythonSandeepterraplantcvpika requests wheel | plantcvYan | medici_PTM_thumbnailsptmPTMThumbnailExtractorConstantinos | medici_PTM_metadataptmPTMMetadataExtractorConstantinos | Name not clear PtmMetadata(?) | | Sandeep |
ncsa.person-tracker | | | python, MATLAB, FFMPEG requests and pika |
ptmPTMMetadataConstantinos | medici_ptm_mapsptm/PTMMapsExtractorConstantinosptm3dPTM3DExtractorimagesptmImagesPTMExtractorextractors-rabbitmq
Name not clear PtmMetadata(? |
(look like examplesrabbitmq | Name not clear extractors-seabird/seabirdLuigi3d_x3d (one of extractors-3d)3dObjJSONExtractor3d_obj_merger (one of extractors-3d)3dOBJMergerExtractormedici_oni (one of 3d)3d/OniExtractorConstantinos | medici_ply_obj (one of extractors-3d)3d/PlyObjExtractorConstantinosmetadata ThreeDMetadataExtractorx3dhtml X3DhtmlExtractorncsa.arcgis.landsat7mosaicArcGISbd-czndviextractorSmruti | ncsa.arcgis.floodplainArcGISbd-czmedici_book | terex_floodplain/config.pySmruti | booksBookPreviewExtractorTheerasit Issaranonimage_pyramidbooksImagePreviewPyramidExtractor-shebookTheerasit Issaranon | shebookbooks/SheBookPreviewExtractor/src/BookPreviewExtractorbooksSheBookPreviewExtractor/src/bookpreviewextractorTheerasit Issaranon