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Scientific

Tool

TypeDescriptionSoftwareRepositoriesContact
 ToolTypeDescriptionSoftwareRepositoriesContact
Historical River Extractor (ncsa.cv.river)Extractor OpenCV (python), convert (from imagemagick), and Gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/riverLiana
     

General

Tesseract (
ncsa.
image
geo.
ocr)
shpExtractor
Extractor
 Extractor 
Tesseract
gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
geo/browse
/ocr
 
Jong Lee
OpenCV Faces (
ncsa.
cv
geo.
faces)
tiffExtractorExtractor 
OpenCV
gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
geo/browse
/opencv
 
Jong Lee
OpenCV Eyes (
ncsa.
cv
image.
eyes)
geotiff
Extractor
  
OpenCV

GDAL, Cython, numpy,
pygeoprocessing

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
geotiff/browse
/opencvLiana

OpenCV Closeups (ncsa.cv.closeups)

Extractor OpenCV
Rui, Mostafa Elag
      

ncsa.image.ponddetect

  Matlabhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
maps/browse/
opencvLiana

OpenCV Profiles (ncsa.cv.profiles)

Extractor
feature_detectionMarcus, Ankit
ncsa.image.humanpref  
OpenCV
Matlabhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
maps/browse/
opencv
humanpref
LianaVLFeat (
Marcus, Ankit

ncsa.xml.greenindexroute, ncsa.

image

csv.

caltech101)

greenindexroute

Extractor
  
 
OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-
cv
maps/browse/
extractors-vlfeatKenton McHenryncsa.bisque.histogram (notes: disabled)
greenrouteMarcus
      
      
ncsa.bisque.metadata (notes: disabled)
      
census-section-segmentor
 
 Extractor  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/censusLiana, Inna

ncsa.

geo.shpExtractor

image.knn_numerals

  OpenCV Marcus
      

General

gdalimagegeotiffgeotiff

Tool

TypeDescriptionSoftwareRepositoriesContact
Tesseract (ncsa.image.ocr)Extractor Tesseracthttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geocv/browse/ocrJong Lee 

OpenCV Faces (ncsa.

geo

cv.

tiffExtractor

faces)

 Extractor gdalOpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geocv/browse/opencvJong Lee 

OpenCV Eyes (ncsa.

cv.

eyes)

 Extractor 

GDAL, Cython, numpy,
pygeoprocessing

OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browseRui, Mostafa Elag/opencvLiana

OpenCV Closeups (ncsa.imagecv.ponddetectcloseups)

 Extractor MatlabOpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mapscv/browse/feature_detectionMarcus, Ankitncsa.image.humanprefopencvLiana

OpenCV Profiles (ncsa.cv.profiles)

Extractor  MatlabOpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mapscv/browse/humanprefopencvMarcus, AnkitLiana

VLFeat (ncsa.xml.greenindexroute, ncsa.csv.greenindexrouteimage.caltech101)

Extractor  OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mapscv/browse/greenrouteMarcus

ncsa.image.knn_numerals

  OpenCV Marcus
extractors-vlfeatKenton McHenry

CMU Sphinx (ncsa.ncsa.audio.speech2text)

  CMU Sphinx, ffmpeg, soxhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2textMarcus
ncsa.nlp.simplelanguage  numpyhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguageLiana
ncsa.nlp.simplesummary  

Natural Language Toolkit (NLTK) for Python, NLTK Data or at least:

 nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt.

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummaryLiana
ncsa.nlp.SNLPSentiment   Stanford CoreNLP tool, java, mavenhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractorLiana, Marcus(?)
ncsa.nlp.wordtables   requests, pika, win32comhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractorLiana
siegfried   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browseGregory Jansen
ncsa.versus.image  Versushttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browseKenton, Smruti
ncsa.image.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/previewRob, Sandeep
ncsa.pdf.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/pdf/previewRob
ncsa.video.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/video/previewRob
NOT DEPLOYED     ncsa.image.digitpy  opencvhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/SimpleDigitPython ncsa.cv.pdfimages  pdfimages, from poppler-utilshttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/poppler ncsa.cv.caltech101  Matlab and VLFeat https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/vlfeat 
dbpedia   Natural Language Toolkit (NLTK) and rdflib.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browse
Luigi Marini
digest   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-digest/browse 
ncsa.hpc   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-hpc/browse
Sandeep Puthanveetil Satheesan
LSVA   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva/browseLiana, Constantinos
LSVA integrated   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse
Sandeep Puthanveetil Satheesan
ncsa.movieslice   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-movieslice/browseSandeep
mri2mesh  pymedici, subprocess, logging, os, numpy, shutil, zipfilehttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mri/browse/mri2meshMarcus
msc-ChemCBCExtractor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/ChemCBCExtractorYan
msc-IsletExtractor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/IsletExtractorYan
msc-MonitorExtractor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/MonitorExtractorYan
ncsa.msc.dailymonitor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/OldMonitorExtractorAshwini
msc-PhenotypeExtractor  

requests, pika, openpyxl, xlrd, pymongo

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/PhenotypeExtractorYan
ncsa.nlp.SNLP   Stanford CoreNLP tool, java, mavenhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPExtractorLiana
ncsa.nlp.tika   Tika project page, pymedicihttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/tikaLiana
person-detector   MATLAB, FFMPEG, requests and pikahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector/browse/pythonSandeep
ncsa.person-tracker  python, MATLAB, FFMPEG requests and pikahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking/browse/pythonSandeep
terra.plantcv  

pika
requests
wheel

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcv/browseYan
medici_PTM_thumbnails   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMThumbnailExtractorConstantinos
medici_PTM_metadata   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataExtractorConstantinos

Name not clear

PtmMetadata(?)

   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataConstantinos
medici_ptm_maps   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMapsExtractorConstantinos
medici_ptm_3d   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTM3DExtractorConstantinos
medici_images_ptm   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/ImagesPTMExtractorConstantinos

extractors-rabbitmq

(look like examples)

   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-rabbitmq/browse 
Name not clear extractors-seabird/   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-seabird/browseLuigi
medici_3d_x3d (one of extractors-3d)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ObjJSONExtractorConstantinos
medici_3d_obj_merger (one of extractors-3d)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OBJMergerExtractorConstantinos
medici_oni (one of extractors-3d)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OniExtractorConstantinos
medici_ply_obj (one of extractors-3d)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/PlyObjExtractorConstantinos
medici_3d_metadata (one of extractors-3d)    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ThreeDMetadataExtractorConstantinos
medici_x3d_html (one of extractors-3d)    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/X3DhtmlExtractorConstantinos
ncsa.arcgis.landsat7mosaic  ArcGIShttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextractorSmruti
ncsa.arcgis.floodplain  ArcGIShttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain/config.pySmruti
lsva-cedd   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cedd/browseConstantinos
ncsa.cinemetrics   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cinemetrics/browseConstantinos
ncsa.image.metadata   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metadataMax. Rob

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