Scientific
Code - is there code? Is it submitted or existing?
PY1/PY2 - Is it using PyClowder1 or PyClowder 2 - expectation for Beta is most will be in PY1 - moving forward with new ones we will use PY2
- Need to update templates to PY2
TC - Is it in the tools catalog?
JSON-LD - is proper JSON-LD generated in the MetaData and registration document - make sure to use full URI
DPL -Deployed via Tools Catalog?
DL - Downloadable?
Test File - Sample file available?
| Domain | Tool | Type | Description | Repositories | Code | Py1/Py2 | TC | JSON-LD | DPL | DL | Test File | Developer | Contact |
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| Hydrology
| Advection Diffusion | Solve a general advection-dispersion equation. |
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| Chemical Mean Age | Extractor | Determine the mean age of chemical constituents with inputs of chemical dynamics. |
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| Document Tables Extractor (ncsa.nlp.wordtables) | Extractor | Extract tables from documents. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractor |
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| GDAL (ncsa.geo.shpExtractor) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse |
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| Yes |
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| GDAL (ncsa.geo.tiffExtractor) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browse |
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| Yes |
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| GDAL (ncsa.image.geotiff) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browse |
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| Historical River Extractor (ncsa.cv.river) | Extractor | Extract the river networks from the ancient hand-drawing maps and compare them with current river networks | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/river |
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| Normalized Difference Vegetation Index (ncsa.arcgis.landsat7mosaic) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextractor |
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| River Chi Index | Extractor | Identify the river dynamics in a river basin and evaluate human activities' influences through Chi index in the streams. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/chi-analysis |
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| Yes |
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| River Sinuosity | Extractor | Study the maturity and equilibrium conditions of a stream through the sinuosity index. |
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| Soil Moisture Change | Extractor | Determine role of hydraulic redistribution in AZ (riparian site / upland site) by studying soil moisture change throughout different seasons. |
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| Esther Lee (estherl2010@gmail.com) | ||||
| Species Classifier | Extractor | SAM based Species Classification from Hyperspectral data, Hyperspectral Indices, NDVI, SAVI, MSAVI, etc. |
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| Debsunder Dutta (debsunderdutta@gmail.com) leaving in July 2016 | |||||
| TerEx (ncsa.arcgis.floodplain) | Extractor | Identify the flat polygons and the heights inside a river valley. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain |
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| Topographic Depressions | Extractor | Identify topographic depressions (TDs) and their distribution on landscape (Number, location, area, volume of TDs). |
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| Tree Delineation | Converter | Tree-wise voxelization of waveform data for lidar metrics that describes canopy structure (max intensity, height, etc...). Individual tree delineation, tree leaf area density to describe vertical leaf distribution. | https://opensource.ncsa.illinois.edu/bitbucket/projects/BD/repos/ir-lidar/browse |
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| Yes | N/A | N/A | ||||
| Valley Safety Zones | Extractor | Estimate submerging areas and water depths under extreme floods and map the safety zones in a river valley. |
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| Vegetation Indices | Extractor | Calculating vegetation indices such as NDVI and Surface Temperature from Landsat 7 and 8 satellite data. |
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| Debsunder Dutta (debsunderdutta@gmail.com) leaving in July 2016 | ||||
| Ecology
| netcdf (ncdump) | Converter | Convert from binary netcdf to text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ncdump/browse | N/A | Yes | Yes | Yes | N/A | N/A | |||
| PEcAn (PEcAn#Ameriflux) | Converter | Convert Ameriflux data to PEcAn's netcdf CF format. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | Yes | Yes | Yes | Yes | N/A | N/A | ||||
| PEcAn (PEcAn#DALEC) | Converter | Convert PEcAn's netcdf CF format to the format required by the DALEC model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | Yes | Yes | Yes | Yes | N/A | N/A | ||||
| PEcAn (PEcAn#ED2) | Converter | Convert PEcAn's netcdf CF format to the format required by the ED model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | Yes | Yes | Yes | Yes | N/A | N/A | ||||
| PEcAn (PEcAn#LINKAGES) | Converter | Convert PEcAn's netcdf CF format to the format required by the LINKAGES model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | Yes | Yes | Yes | Yes | N/A | N/A | ||||
| PEcAn (PEcAn#Sipnet) | Converter | Convert PEcAn's netcdf CF format to the format required by the Sipnet model. | https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-pecan/browse | Yes | Yes | Yes | Yes | N/A | N/A | ||||
PEcAn (PEcAn#AmerifluxBNL) PEcAn (PEcAn#FLUXNET2015) PEcAn (PEcAn#FACE) PEcAn (PEcAn#PALEON) PEcAn (PEcAn#NLDAS) PEcAn (PEcAn#CURNCEP) PEcAn (PEcAn#GLDAS) PEcAn (PEcAn#GFDL) PEcAn (PEcAn#BIOCRO) PEcAn (PEcAn#CLM) PEcAn (PEcAn#GDAY) PEcAn (PEcAn#JULES) PEcAn (PEcAn#LPJ-GUESS) PEcAn (PEcAn#MAAT) PEcAn (PEcAn#MAESPA) PEcAn (PEcAn#PRELES) | Yes | Yes | Yes | Yes | N/A | N/A | |||||||
| PlantCV (terra.plantcv) | Extractor | Extract plant height, area, and color distribution from photographs. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcv/browse | Yes |
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| Yan Liu | |||
| Civil & Environmental Engineering
| Body of Water Detector (ncsa.image.ponddetect) | Extractor | Land coverage, extract locations of bodies of water from satellite data. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detection | Yes |
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| Marcus Slavenas | ||
| GI Identification | Extractor | Yes | Yes | Yes | Yes |
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| Marcus Slavenas | |||||
| Human Preference Score (ncsa.image.humanpref) | Extractor | Assign a model derived human preference score to a given image of an urban environment. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanpref |
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| Marcus Slavenas | |||
Route Greenness (ncsa.xml.greenindexroute) | Extractor | Derive the green index of a city route. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenroute |
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| Yes |
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| Marcus Slavenas | |||
| Social Media GI Preferences | Extractor |
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| Stanford CoreNLP - Sentiment (ncsa.nlp.SNLPSentiment) | Extractor | Assign a sentiment score to a piece of text. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractor |
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| TUV Triaxus | Extractor |
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| Social Science & Humanities | Bertillon Card Cell Extractor (ncsa.image.dmp) | Extractor | Extract table cells from a Bertillon Card. | https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-debod |
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| Census Form Cell Extractor (census-section-segmentor) | Extractor | Extract table cells from a 1930s Census form. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/census |
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| Handwritten Decimals Extractor (ncsa.image.sphog.debod) | Extractor | Extract handwritten decimal values from an image. | https://opensource.ncsa.illinois.edu/bitbucket/projects/DEBOD/repos/extractors-handwrittendecimals |
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| Killed Photos (ncsa.image.iarp_remove_circle) | Extractor | Identify depression era photos "killed" by Farm Security Administration director Roy Stryker, indicated by a hole punch in the image. | https://opensource.ncsa.illinois.edu/bitbucket/projects/IARP/repos/image_fetcher/browse/extractors/remove_circle |
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| Marcus Slavenas | Marcus Slavenas | ||
| Mean Grey (ncsa.cv.meangrey) | Extractor | Mean grey values of black and white photos. | https://opensource.ncsa.illinois.edu/bitbucket/projects/IARP/repos/image_fetcher/browse/extractors/mean_grey |
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| Marcus Slavenas | Marcus Slavenas | |||
| Movie Slice (ncsa.movieslice) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-movieslice/browse |
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| Person Detector (person-detector) | Extractor | Extract locations of people in an image. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector |
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| Person Tracker (ncsa.person-tracker) | Extractor | Extract locations and paths of people moving in videos. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking |
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| Video Analytics Toolbox (ncsa.cinemetrics_batch) | Extractor | Extract shot descriptors from videos. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse |
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| Biology, Genomics, Medicine | FSL (mri2mesh) | Extractor | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mri/browse/mri2mesh |
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| Marcus Slavenas | Marcus Slavenas | ||
| Glomeruli (ncsa.msc.diagnosis) | Extractor | Extract glomeruli from Kidney biopsy images. | https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/Kidney | Yes | Yes | Yes |
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General
https://opensource.ncsa.illinois.edu/confluence/display/BD/Transformations (Under development, Being Refactored)