Look out - Shannon's Baaaaaack!


If you have the feeling you’ve experienced an event before in real life, call it déjà vu.

If you feel like you’ve previously experienced an event in a dream instead, there’s a different term for it: déjà rêvé.


WhoPlanned - MondayAccomplished - Friday
  


INCROE

  • Science code: wrap up Fuyu's code; pass 2nd round edits to Xian
  • Pyincore: add data service test and fix pyincore according to failed cases
  • Semantic: meet with Omar to start implementing
  • Other tasks TBD

SMM

  • faculty trolling project: prettify the frontend and add UI components
  • meetings
  • Clowder related tasks (if have time)


INCROE

  • Science code: wrap up Fuyu's code; pass 2nd round edits to Xian
  • Pyincore: add data service test and fix pyincore according to failed cases
  • Fragility browser on jupyterlab

SMM

  • faculty trolling project: prettify the frontend and add UI components
  • Cover Crop
    • Project meeting/web design review
    • Update covercrop VM with new genotype for Rye
    • Code review
  • FarmDoc
    • Document migration steps for moving covercrop postgres/geoserver to fd-geoserver
  • IN-Core
    • Continue working on moving building damage analyses to pyincore
    • Work on utility to create result dataset
    • Code review
 
 


Vara Veera Gowtham Naraharisetty

INCORE

  • Implement PUT test cases for data service
  • Start moving Water Network Analysis code from v1 to python 

Farm doc

  • Setup local dev environment. Run Soil Converter locally
  • Migrate postgres tables to the new farmdoc VM

  
 Vacation Mon- Tue, Sick Wed - Fri  Vacation Mon- Tue, Sick Wed - Fri
  • KnowEng
    • Various changes to imputation function in Data_Cleanup_Pipeline
    • Allowing replace NA value with customized value when write to file
    • Testing for output reproducebility for samples_clustering_pipeline and general_clustering_pipeline
    • Add intersection check for Feature_Prioritization_Pipeline & refactor the common code between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
    • Update Dockerfile in all repositories to sync on latest base_image and maintainer list
    • Build docker image for data_cleanup_pipeline and signature_analysis_pipeline
    • Investigate issue with input file cannot be correctly read by pandas
  • In-Core
    • review pull request
  • KnowEng
    • Finished several changes to imputation function in Data_Cleanup_Pipeline
      • Removed impute_na from Geneset_Characterization_Pipeline
      • Added impute_na to Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
      • Added default option of imputation to be reject
      • Added new tests
    • Added option to allow replacing NA value with any customized characters.
    • Tested samples_clustering_pipeline and general_clustering_pipeline for reproducebility issue and reported findings.
    • Added intersection check for Feature_Prioritization_Pipeline & refactor the common code between Gene_Prioritization_Pipeline and Feature_Prioritization_Pipeline
    • Update Dockerfile in all repositories to sync on latest base_image and maintainer lists
    • Built docker image for data_cleanup_pipeline and signature_analysis_pipeline
    • Investigated the issue that input data was altered without any changes and found that duplicate columns was causing this. Need more investigation.
  • In-Core
    • Reviewed new building_damage_analysis.py



  
  • CSSI proposals
  • CSSI proposals
  • CSSI proposal
  • Clowder documentation
  • Clowder 1.4 release and PR reviews
  • Syngenta extractors
  • Geodashboard PR reviews
  • BD PR rewiews
  • Vacation Friday
  • CSSI proposal
  • Clowder documentation
  • Clowder 1.4 release and PR reviews
  • BD PR rewiews
  • Vacation Friday
  • Created Cyprus Clowder instance
  • Created IMLCZO parsers VM
  •  gltg
    • ingesting data
  • vbd
    • parsing mosquito data
    • running model
 
  • laser 3d format conversion
  • pipeline health monitoring
 
  • MDF
    • continue read the docs for the Sphinx
    • NDS Workbench, run Forge examples
    • script cron job discuss with Chad
    • script for FF pipeline
  • Farmdoc
    • FD-10 - finishIn Progress
    • FD-11 - convert arcCoPay In Progress
  • setup VM for the presentation
  • MDF
    • not done
    • yes
    • e-mail to Chad, discussed, involve ben
    • no big progress
  • Farmdoc
    • done
    • done
  • e-mail to Amanda about resources, Friday meeting
  • 5 min presentation
  • NDS / TERRA
    • Keep trying to scale up the TERRA Workbench
    • Maintenance where needed
  • KnowEnG
    • Last week on the project
    • Kubernetes Demo on Wednesday
    • NIH Demo on Friday
  • Crops in Silico
    • Continue collecting feedback and iterating until satisfied
  • NDS / TERRA
    • Failed attempts trying to scale up the TERRA Workbench
    • Minor Workbench maintenance
  • KnowEnG
    • NIH Demo cancelled due to scheduling conflicts
    • Wrap up final bits of Kubernetes for their stuff
  • Crops in Silico
    • Continue collecting feedback and iterating until satisfied
  • GLTG
  • IMLCZO
    • IMLCZO-225 - Getting issue details... STATUS
    • Re-run Parsers for Flux Tower and Allerton non-Decagon
  • GLTG
  • IMLCZO
    • Re-ran Parsers for Flux Tower and Allerton non-Decagon
  
  • Industry - Pix4D Extractor (W.I.P.)
  • k8s dev setup/test for KnowEnG (W.I.P.)
  • Industry - Pix4D Extractor (W.I.P.)
  • k8s dev setup/test for KnowEnG (W.I.P.)
  •  LSST
    • operations requirement gathering
    • parsl
  • PEcAn
    • htcondor meeting
    • create RC VM
  • Industry
    • check on progress of new hardware
    • extractors per space
  • TERRA
    • quarterly report
  • NCSA/ISDA
    • PEARC reviews
 
  • BD
    • Sprint tasks
      • BD-CLI update
      • Code review
  • CCROP
    • Tool to generate experiment file from template based on user input
    • Other tasks
  • JUDEL
    • Apply Tesseract for OCR and newspaper article segmentation
  •  BD
    • Worked on BD-CLI update
  • CCROP
    • Completed development for tool to generate experiment file from template based on user input
  • JUDEL
    • Working on applying Tesseract for OCR and newspaper article segmentation.
  • Even tho I read a lot of email while I was out - I still have email to catch up on
  • Sprint Updates
  • Brown Dog Qtr 1 2018 report - kickoff
  •  Get back in a groove (smile) and catch up on everything else
  • new tablet?
 
 
  •  BD
    • upgrade to pyclowder2 for meangrey
    • check the silhouette for clusterman – failed to get an answer
    • fix pecan shiny
  • GLM
    • ingest USGS 04024000 on dev.
    • add helper text for USGS quality code
  • CC
    • new UI
    • initial implement for user session service.
  • Finish pycsw extractor by adding geotiff function
  • Update docker for pyincore/opensees incore jupyterhub docker
  • Update kubernetes with pyincore jupyterlab
  • Prepare the COE demo
  • Finished pycsw extractor and tested it with docker and clowder
  • Updated docker for pyincore, opensees, and other jupyterlab extension
  • Updated kubernetes with new jupyter lab
  • Tested web mapping on the jupyterlab