Did you know: The 100 folds in a chef's toque are said to represent 100 ways to cook an egg.

Have a great week -

 

WhoPlanned - MondayAccomplished - Friday
 

PR In Review 

  • design and implement SimpleExtractor in Pyclowder2.
    1. wordcount-simepleextractor
    2. meangrey-simpleextractor.

Done

  • update greenroute with feature to set step size in meter unit, discuss with students on the format of uploading test files.
  • update greenroute on clowder dev.
  • deploy clusterscale on dev swarm cluster with docker-compose file.
  • Daily maintenance on Browndog.
  1. Prep for Globus World
  2. Collaborate on TACC Cyberinfrastructure for Archives proposal.
  3. Attend Globus World

  • Incore
    • Data browser and Fragility Browser fix bug + styling
  • SMM
    • change citation and email address in the app
    • hide boolean function
    • add MIME type when uploading files to s3 bucket and clowder
    • design clowder interface in SMM
  • Incore
    • Data browser and Fragility Browser fix bug + styling
    • add transportation recovery model to pyincore analyses
  • SMM
    • change citation and email address in the app
    • add MIME type when uploading files to s3 bucket and clowder
  • FarmDoc
    • Review matlab code
    • Create VMs for shared architecture with Cover Crop
  • CoverCrop
    • Code review
    • Help updateworkflow with template parsing tool
  • IN-Core
    • v2 demo
    • Code review
  • General
    • Finish zenodo entry and initial password reset page for datawolf, create release plan for DataWolf 4.3
 

 NDS

  • Planning

TERRA


WholeTale

  • Godaddy API integration
  • Integration tests

 NDS

TERRA

WholeTale

Vara Veera Gowtham Naraharisetty
  1. Start converting Water Damage Analysis to pyincore
  2. Create initial farmdoc web application FD-15
  3. Migrate postgres database for farmdoc FD-6
  1. Setup local and ran building damage. Made progress on converting Water Facility Damage.
  2. Made progress on farmdoc webapp setup. Setup flask and folder structure.
  3. Completed database migration for farmdoc
  

 InCore

  • Help in preparation for Demo

GLM

  • Start working on visualizations for Fish Data

SMU

  • Follow up on extractors not running after update

 InCore

  • Wrapped up the development of JupyterLab_Incore. Updates in the data viewer, added a creator filter, previews for xml and text files, added a dataset metadata component
  • GLM
    • Updates to pull request on filtering by date on the trends by region detail page
    • Started 2.6.0 release
    • Review Pull Requests
  • KnowEng
    • Add logic for supporting mixed data type in phenotype expander
    • SAP:
      • Add column/row duplication check
      • Add gene order check
      • Add remove NA index to signature data and user spreadsheet data
    • Update README
    • Explore solution for jupyterhub user data backup in AWS

  • InCore
    • Finish adding new multiprocessing library to buildingdamage.py
    • Benchmark testing on parallelization of buildingdamage.py
  • KnowEng
    • Added logic for supporting mixed data type in phenotype expander
    • SAP:
      • Added column/row duplication check
      • Added gene order check
      • Added remove NA index to signature data and user spreadsheet data
      • Added related unit tests
    • Updated README
    • Looking into solution for jupyterhub user data backup in AWS
  • InCore
    • Finished adding new multiprocessing library to buildingdamage.py
    • Moved mapping_id from constructor to class function
    • Started benchmarking testing on parallelization of buildingdamage.py, need clarification on incore2-test machine resource.
  
  • NASA meetings
  • ...
  • NASA meetings
  • Cis
  • HR
  • BD
    • Clowder 1.4 release and 2.0 development
    • Report section
  • Industry
    • Documentation and planning
  • GLM, GLTG, IMLCZO Pull requests and release
  • HR
  • Last minute meetings and HR.
  • Cyprus Clowder instance support.
  • Clowder landing page.
  •  gltg
    • script for iepa sensor name
    • usgs parser deployed
    • release?
    • iepa -review comments
  • vbd
    • changes to app for model year selection
  •  gltg
    • iepa -review comments
    • usgs parsers deployed
    • updated iepa sensors on dev
  • vbd
    • fix graphs for new 2017 data
    • created data endpoints for dates, weather, and forecaste
  
  • vacation We-Fri
  • MDF
    • script for FF pipeline
  • Farmdoc
    • finish  FD-13 - Getting issue details... STATUS , start FD-14 - Getting issue details... STATUS
  • done
  • MDF
    • script for FF pipeline
  • Farmdoc
    • initial PR before departure
  • NDS
    • Attempt to reprovision the public Workbench beta (again)
    • Planning next steps (upcoming demos, releases, etc)
  • Crops in Silico
    • Add the real models to UI to prepare for spring demo
    • Update UI to support any new features/quirks in the real models
    • Plan the spring demo of the UI, write slides and a script
  • Industry
    • Get the proxy endpoint working
    • Ask about next steps / backlog?
  • NDS
    • Provisioning process is once again working, but I will not have cycles to perform the necessary user migration for another week or so
  • Crops in Silico
  • Industry
    • Basic proxy is functioning, but it cannot yet handle large responses
  • GLTG
    • Reviewer Comments
    • GEOD-1070 - Getting issue details... STATUS
    • GEOD-1076 - Getting issue details... STATUS
    • GLGVO-431 - Getting issue details... STATUS
    • If time:
  • IMLCZO
    • Re-run Parsers for Flux Tower and Allerton non-Decagon
    • GEOD-1063 - Getting issue details... STATUS
    • IMLCZO-229 - Getting issue details... STATUS
    • IMLCZO-226 - Getting issue details... STATUS
    • If time:
  • GLTG
  • IMLCZO
    • Re-ran Parsers for Flux Tower and Allerton non-Decagon
    • GEOD-1063 - Getting issue details... STATUS
    • IMLCZO-229 - Getting issue details... STATUS
    • IMLCZO-226 - Getting issue details... STATUS
  
  • KnowEnG demo for the Cancer Informatics Core
  • Pycsw server set up
 
  
  •  BD
    • Quarterly report
    • Dev tasks
  • CCROP
    • Pull request reviews
    • Dev tasks
  • IARP
    • Final report
  • JUDEL
    • Image quality improvemt for Tesseract.
    • Quarterly report
 
  • GLTG - report for IEPA - touched
  • Brown Dog - f/u on quarterly report - touched
  • BD - flyer - learn new program - touched
  • HR tasks - done for week
  • FarmDoc - spin up progress - f/u - done
  • Make sure KISTI visiting scholar tasks are followed up on - done
  • In-Core - demo demo - touched
  • Plans BD Exec Committee Meeting - touched - not yet
  • SSA PPT .... - touched
  • SMU contract f/u - touched
  • BD No Cost Extension F/U - touched

 Left at noon on Friday to go to Ireland

All tasks were touched and or completed

 
  • Monday off 
  • BD
    • MRI extractor, some problem with memory, not finish
    • BD report
  • GLM
    • test the time for binning, seems a lot of work, maybe has no time to do that.
  • CC
    • fix private route with new router lib. – not working.
  • Update dataType in data serivce with new mapping
  • Update jupyterlab mapping preparation
  • Update jupyterlab docker
  • Update extractors-geo to use pyclowder 2
  • Worked on updating pycsw extract to use pyclowder 2
  • Tested pycsw clowder dockers
  • Updated incore jupyterlab docker
  • Updated incore kubernetes