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ID (Extractor Name from config file,

same as queue name)

Programming

Language

SoftwareOSCan be Dockerized?Can be upload to Docker Hub ?Assigned ToLink to repoWho wrote or worked on the code
DEPLOYED        
ncsa.image.ocrPythonTesseractLinux  Ruiocr 

ncsa.cv.faces

PythonOpenCVLinux  Ruihttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cv.eyes

PythonOpenCVLinux  Ruihttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cv.closeups

PythonOpenCVLinux  Ruihttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cv.profiles

PythonOpenCVLinux  Ruihttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cellprofiler.fluorescentcomet

Pythonpymedici (question)WindowsNo  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.fly

Python WindowsNo  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.human

Python WindowsNo  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.silvercomet

Python WindowsNo  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.speckle

Python WindowsNo  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.trackobject

Python WindowsNo  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.tumor

Python WindowsNo  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.yeast

Python WindowsNo  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.image.sphog

Python Matlab, mnist-sphog Linux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/HandwrittenNumbers 
  • ncsa.image.caltech101
       
ncsa.bisque.histogram (notes: disabled)Python Linux     
ncsa.bisque.metadata (notes: disabled)Python Linux     
census-section-segmentorJava Linux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/censusLiana, Inna
ncsa.cv.river PythonOpenCV (python), convert (from imagemagick), and GdalLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/riverLiana
ncsa.geo.shpExtractorPythongdalLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.geo.tiffExtractorPythongdalLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.image.geotiffPython

GDAL, Cython, numpy,
pygeoprocessing

Linux  Ruihttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browseRui, Mostafa Elag

ncsa.image.ponddetect

PythonMatlabLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detectionMarcus, Ankit
ncsa.image.humanprefPythonMatlabLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanprefMarcus, Ankit

ncsa.xml.greenindexroute, ncsa.csv.greenindexroute

PythonOpenCVLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenrouteMarcus

ncsa.image.knn_numerals

PythonOpenCVLinux   Marcus

ncsa.audio.speech2text

JavaCMU Sphinx, ffmpeg, soxLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2textMarcus
ncsa.audio.previewPython    Innahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/preview 
ncsa.nlp.simplelanguagePythonnumpy   Innahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguageLiana
ncsa.nlp.simplesummaryPython

Natural Language Toolkit (NLTK) for Python, NLTK Data or at least:

 nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt.

   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummaryLiana
ncsa.nlp.SNLPSentimentJava Stanford CoreNLP tool, java, maven   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractorLiana, Marcus(?)
ncsa.nlp.wordtablesPython requestspikawin32com    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractorLiana
siegfriedPython     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browseGregory Jansen
ncsa.versus.imageJavaVersusLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browseKenton, Smruti
ncsa.image.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)Python     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/previewRob, Sandeep
ncsa.pdf.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)Python     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/pdf/previewRob
ncsa.video.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)Python     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/video/previewRob
         
         
         
NOT DEPLOYED        
ncsa.image.digitpyPythonopencv    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/SimpleDigitPython 
ncsa.cv.pdfimages pdfimages, from poppler-utils    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/poppler 
ncsa.cv.caltech101PythonMatlab and VLFeat 64-bit Mac OS    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/vlfeat 
dbpediaPython Natural Language Toolkit (NLTK) and rdflib.   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browse
digestPython     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-digest/browse 
ncsa.hpcPython     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-hpc/browse
LSVAJava     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva/browseLiana, Constantinos
LSVA integrated     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse
ncsa.movieslicePython     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-movieslice/browseSandeep
mri2meshPythonpymedici, subprocess, logging, os, numpy, shutil, zipfile    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mri/browse/mri2meshMarcus
msc-ChemCBCExtractorPythonrequests, pika, openpyxl, xlrd, pymongoLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/ChemCBCExtractorYan
msc-IsletExtractorPythonrequests, pika, openpyxl, xlrd, pymongoLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/IsletExtractorYan
msc-MonitorExtractorPythonrequests, pika, openpyxl, xlrd, pymongoLinux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/MonitorExtractorYan
ncsa.msc.dailymonitorPythonrequests, pika, openpyxl, xlrd, pymongo   not usedhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/OldMonitorExtractorAshwini
msc-PhenotypeExtractorPython

requests, pika, openpyxl, xlrd, pymongo

Linux  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/PhenotypeExtractorYan
ncsa.nlp.SNLPJava Stanford CoreNLP tool, java, maven    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPExtractorLiana
ncsa.nlp.tikaPython Tika project page, pymedici   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/tikaLiana
person-detectorPython MATLAB, FFMPEG, requests and pika    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector/browse/pythonSandeep
ncsa.person-trackerPythonpython, MATLAB, FFMPEG requests and pika    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking/browse/pythonSandeep
terra.plantcvPython

pika
requests
wheel

    https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcv/browseYan
medici_PTM_thumbnailsJava     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMThumbnailExtractorConstantinos
medici_PTM_metadataJava     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataExtractorConstantinos

Name not clear

PtmMetadata(?)

Java     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataConstantinos
medici_ptm_mapsJava     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMapsExtractorConstantinos
medici_ptm_3dJava     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTM3DExtractorConstantinos
medici_images_ptmJava     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/ImagesPTMExtractorConstantinos

extractors-rabbitmq

(look like examples)

      https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-rabbitmq/browse 
Name not clear extractors-seabird/Scala     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-seabird/browseLuigi
medici_3d_x3d (one of extractors-3d)Java     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ObjJSONExtractorConstantinos
medici_3d_obj_merger (one of extractors-3d)Java     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OBJMergerExtractorConstantinos
medici_oni (one of extractors-3d)Java     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OniExtractorConstantinos
medici_ply_obj (one of extractors-3d)Java     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/PlyObjExtractorConstantinos
medici_3d_metadata (one of extractors-3d) Java     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ThreeDMetadataExtractorConstantinos
medici_x3d_html (one of extractors-3d) Java     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/X3DhtmlExtractorConstantinos
ncsa.arcgis.landsat7mosaicPythonArcGISWindowsNo https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextractorSmruti
ncsa.arcgis.floodplainPythonArcGISWindowsNo https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain/config.pySmruti
medici_bookJava     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/BookPreviewExtractorTheerasit Issaranon
medici_image_pyramidJava     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/ImagePreviewPyramidExtractor-shebookTheerasit Issaranon
shebookJava     

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/SheBookPreviewExtractor/src/BookPreviewExtractor

 

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/SheBookPreviewExtractor/src/bookpreviewextractor

Theerasit Issaranon
lsva-ceddJava     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cedd/browseConstantinos
ncsa.cinemetricsPython     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cinemetrics/browseConstantinos
ncsa.image.metadataPython     https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metadataMax. Rob
         
         
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