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Tool

DescriptionSoftwareRepositoriesContact
Tesseract (ncsa.image.ocr) Tesseracthttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/ocr 

OpenCV Faces (ncsa.cv.faces)

 OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencv 

OpenCV Eyes (ncsa.cv.eyes)

 OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

OpenCV Closeups (ncsa.cv.closeups)

 OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

OpenCV Profiles (ncsa.cv.profiles)

 OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/opencvLiana

ncsa.cellprofiler.fluorescentcomet

 pymedici (question)https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.fly

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.human

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.silvercomet

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.speckle

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.trackobject

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.tumor

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.cellprofiler.yeast

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/cellprofilerLiana

ncsa.image.sphog

  Matlab, mnist-sphog https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/HandwrittenNumbers 
  • ncsa.image.caltech101
    
ncsa.bisque.histogram (notes: disabled)    
ncsa.bisque.metadata (notes: disabled)    
census-section-segmentor  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/censusLiana, Inna
ncsa.cv.river OpenCV (python), convert (from imagemagick), and Gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/riverLiana
ncsa.geo.shpExtractor gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.geo.tiffExtractor gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.image.geotiff 

GDAL, Cython, numpy,
pygeoprocessing

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browseRui, Mostafa Elag

ncsa.image.ponddetect

 Matlabhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detectionMarcus, Ankit
ncsa.image.humanpref Matlabhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanprefMarcus, Ankit

ncsa.xml.greenindexroute, ncsa.csv.greenindexroute

 OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenrouteMarcus

ncsa.image.knn_numerals

 OpenCV Marcus

ncsa.audio.speech2text

 CMU Sphinx, ffmpeg, soxhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2textMarcus
ncsa.audio.preview  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/preview 
ncsa.nlp.simplelanguage numpyhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguageLiana
ncsa.nlp.simplesummary 

Natural Language Toolkit (NLTK) for Python, NLTK Data or at least:

 nltk.corpus,nltk.stem.porter and nltk.tokenize.punkt.

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummaryLiana
ncsa.nlp.SNLPSentiment  Stanford CoreNLP tool, java, mavenhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractorLiana, Marcus(?)
ncsa.nlp.wordtables  requestspikawin32comhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractorLiana
siegfried  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browseGregory Jansen
ncsa.versus.image Versushttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browseKenton, Smruti
ncsa.image.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/previewRob, Sandeep
ncsa.pdf.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/pdf/previewRob
ncsa.video.preview (note: check if really deployed. there is an extractor in Hosted VMs list with a similar name.)  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/video/previewRob
     
     
     
NOT DEPLOYED    
ncsa.image.digitpy opencvhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/handwritten/SimpleDigitPython 
ncsa.cv.pdfimages pdfimages, from poppler-utilshttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/poppler 
ncsa.cv.caltech101 Matlab and VLFeat https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/vlfeat 
dbpedia  Natural Language Toolkit (NLTK) and rdflib.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browse
digest  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-digest/browse 
ncsa.hpc  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-hpc/browse
LSVA  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva/browseLiana, Constantinos
LSVA integrated  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse
ncsa.movieslice  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-movieslice/browseSandeep
mri2mesh pymedici, subprocess, logging, os, numpy, shutil, zipfilehttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mri/browse/mri2meshMarcus
msc-ChemCBCExtractor requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/ChemCBCExtractorYan
msc-IsletExtractor requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/IsletExtractorYan
msc-MonitorExtractor requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/MonitorExtractorYan
ncsa.msc.dailymonitor requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/OldMonitorExtractorAshwini
msc-PhenotypeExtractor 

requests, pika, openpyxl, xlrd, pymongo

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/PhenotypeExtractorYan
ncsa.nlp.SNLP  Stanford CoreNLP tool, java, mavenhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPExtractorLiana
ncsa.nlp.tika  Tika project page, pymedicihttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/tikaLiana
person-detector  MATLAB, FFMPEG, requests and pikahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector/browse/pythonSandeep
ncsa.person-tracker python, MATLAB, FFMPEG requests and pikahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking/browse/pythonSandeep
terra.plantcv 

pika
requests
wheel

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcv/browseYan
medici_PTM_thumbnails  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMThumbnailExtractorConstantinos
medici_PTM_metadata  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataExtractorConstantinos

Name not clear

PtmMetadata(?)

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMetadataConstantinos
medici_ptm_maps  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTMMapsExtractorConstantinos
medici_ptm_3d  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/PTM3DExtractorConstantinos
medici_images_ptm  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-ptm/browse/ImagesPTMExtractorConstantinos

extractors-rabbitmq

(look like examples)

  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-rabbitmq/browse 
Name not clear extractors-seabird/  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-seabird/browseLuigi
medici_3d_x3d (one of extractors-3d)  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ObjJSONExtractorConstantinos
medici_3d_obj_merger (one of extractors-3d)  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OBJMergerExtractorConstantinos
medici_oni (one of extractors-3d)  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/OniExtractorConstantinos
medici_ply_obj (one of extractors-3d)  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/PlyObjExtractorConstantinos
medici_3d_metadata (one of extractors-3d)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/ThreeDMetadataExtractorConstantinos
medici_x3d_html (one of extractors-3d)   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-3d/browse/X3DhtmlExtractorConstantinos
ncsa.arcgis.landsat7mosaic ArcGIShttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextractorSmruti
ncsa.arcgis.floodplain ArcGIShttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain/config.pySmruti
medici_book  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/BookPreviewExtractorTheerasit Issaranon
medici_image_pyramid  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/ImagePreviewPyramidExtractor-shebookTheerasit Issaranon
shebook  

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/SheBookPreviewExtractor/src/BookPreviewExtractor

 

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-books/browse/SheBookPreviewExtractor/src/bookpreviewextractor

Theerasit Issaranon
lsva-cedd  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cedd/browseConstantinos
ncsa.cinemetrics  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cinemetrics/browseConstantinos
ncsa.image.metadata  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metadataMax. Rob
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