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Scientific

Domain ToolTypeDescriptionSoftwareRepositoriesContact

 

 

 

 

 

 

 

 

Hydrology

Historical River Extractor (ncsa.cv.river)Extractor OpenCV (python), convert (from imagemagick), and Gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/riverLiana
ncsa.geo.shpExtractor Extractor gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.geo.tiffExtractorExtractor gdalhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geo/browseJong Lee
ncsa.image.geotiff  

GDAL, Cython, numpy,
pygeoprocessing

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-geotiff/browseRui, Mostafa Elag
ncsa.arcgis.landsat7mosaic  ArcGIShttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/ndviextractorSmruti
ncsa.arcgis.floodplain  ArcGIShttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-bd-cz/browse/terex_floodplain/config.pySmruti
Biologyterra.plantcv  

pika
requests
wheel

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-plantcv/browseYan

 

 

 

Civil & Environmental Engineering

Stanford CoreNLP Sentiment (ncsa.nlp.SNLPSentiment)   Stanford CoreNLP tool, java, mavenhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPSentimentExtractorLiana, Marcus(?)

Body of Water Detector (ncsa.image.ponddetect)

  Matlabhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/feature_detectionMarcus, Ankit
Human Preference Score (ncsa.image.humanpref)  Matlabhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/humanprefMarcus, Ankit

ncsa.xml.greenindexroute, ncsa.csv.greenindexroute

  OpenCVhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-maps/browse/greenrouteMarcus
 census-section-segmentor Extractor  https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/censusLiana, Inna
 

ncsa.image.knn_numerals

  OpenCV Marcus
 ncsa.nlp.wordtables   requestspikawin32comhttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/WordTablesExtractorLiana
 LSVA   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva/browseLiana, Constantinos
 LSVA integrated   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-lsva-integrated/browse
 ncsa.movieslice   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-movieslice/browseSandeep
 mri2mesh  pymedici, subprocess, logging, os, numpy, shutil, zipfilehttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-mri/browse/mri2meshMarcus
 msc-ChemCBCExtractor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/ChemCBCExtractorYan
 msc-IsletExtractor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/IsletExtractorYan
 msc-MonitorExtractor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/MonitorExtractorYan
 ncsa.msc.dailymonitor  requests, pika, openpyxl, xlrd, pymongohttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/OldMonitorExtractorAshwini
 msc-PhenotypeExtractor  

requests, pika, openpyxl, xlrd, pymongo

https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-msc/browse/PhenotypeExtractorYan
 person-detector   MATLAB, FFMPEG, requests and pikahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-detector/browse/pythonSandeep
 ncsa.person-tracker  python, MATLAB, FFMPEG requests and pikahttps://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-person-tracking/browse/pythonSandeep
 lsva-cedd   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cedd/browseConstantinos
 ncsa.cinemetrics   https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cinemetrics/browseConstantinos

General

Tool

TypeDescription                                                                         RepositoriesContact
Calibre (ebook-converter)ConverterConvert e-books to a number of document formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ebook-convert/browse 

CMU Sphinx (ncsa.audio.speech2text)

ExtractorAudio recognition to extract text for speech within audio.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/audio/speech2text
Daffodil (daffodil)ConverterConvert formats with a provided DFDL schema to XML.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-daffodil/browseKenton McHenry
DBPedia (ncsa.dbpedia)ExtractorFind and define named entities within the given text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-dbpedia/browse
FFMPEG (ffmpeg)ConverterConvert between a large number of video formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ffmpeg/browse
FLAC (flac)ConverterConvert to and from the FLAC format from other audio formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-flac/browse
Ghostscript (ghostscript)ConverterConvert between document formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-ghostscript/browse
htmldoc (htmldoc)ConverterConvert HTML to a number of document formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-htmldoc/browseKenton McHenry
ImageMagick (ImageMagick)ConverterConvert between a large number of image formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-imagemagick/browseKenton McHenry
ImageMagick (ncsa.image.metadata)ExtractorPull available EXIF image metadata from a given image.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-core/browse/image/metadata
Kabeja (kabeja)ConverterConvert between a handful of 3D and image formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-kabeja/browse 

OpenCV - Faces (ncsa.cv.faces)

ExtractorFind faces in an image and return their locations.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-facesKenton McHenry

OpenCV - Eyes (ncsa.cv.eyes)

ExtractorFind eyes in an image and return their locations.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-eyesKenton McHenry

OpenCV - Closeups (ncsa.cv.closeups)

ExtractorDetermine whether an image is a closeup of a person or not.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-closeupsKenton McHenry

OpenCV - Profiles (ncsa.cv.profiles)

ExtractorFind human face profiles in an image and return their locations.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-opencv/extractors-opencv-profilesKenton McHenry
Langid (ncsa.nlp.simplelanguage)ExtractorIdentify the language of the given text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleLanguage 
LibreOffice (unoconv)ConverterConvert to and from a variety of document formats.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-unoconv/browse 
NLTK - Summary (ncsa.nlp.simplesummary)ExtractorSummarize a body of text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SimpleSummary 
Siegfried (sigfried)ExtractorExtract information about a given file relevant to identifying its type and validating its format.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-siegfried/browse
Stanford CoreNLP (ncsa.nlp.SNLP)ExtractorNatural Language Process extractions such as parts of speech, named entities, langauge, etc.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/SNLP/SNLPExtractor 
Tesseract (ncsa.image.ocr)ExtractorObject Character Recognition (OCR) to extract text from images containing text.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-tesseractKenton McHenry
Tika (ncsa.nlp.tika)ExtractorDocument extractions such as language identification, ...https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-nlp/browse/tika
txt2html (txt2html)ConverterConvert text documents to HTML.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-txt2html/browseKenton McHenry
Versus - Color Distribution (ncsa.versus.image)ExtractorGenerate a distribution of color values within an image to be used for comparing how similar two images are.https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-versus/browse

VLFeat (ncsa.image.caltech101)

ExtractorClassify images as to whether they contain objects from the Caltech101 dataset (e.g. people, airplanes, motorcycles, cougars, ...).https://opensource.ncsa.illinois.edu/bitbucket/projects/CATS/repos/extractors-cv/browse/extractors-vlfeatKenton McHenry
Zip (zip)ConverterUnzip zip archives.https://opensource.ncsa.illinois.edu/bitbucket/projects/POL/repos/converters-zip/browseKenton McHenry

https://opensource.ncsa.illinois.edu/confluence/display/BD/Extractors

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