akka.fp.Loader [FP-Akka module]
- Parses command line options for configuring MongoDBReader and MongoDBWriter actors.
- Instantiates and runs workflow comprising five Akka actors represented by the five class dependencies below.
Internally creates an instance of the nested class ScientificNameValidatorInvocation.
- Injects fp.services.COLService into the scientificNameService field of the instantiated akka.fp.NewScientificName actor.
akka.fp.NewScientificNameValidator [FP-Akka module]
- Akka actor for validating scientific name and authorship fields.
- Uses the class injected into the scientificNameService field (fp.services.COLService and its parent fp.services.SciNameServiceParent) to carry out validation tasks
- Receives individual SpecimenRecord instances from upstream MongoDBReader. For each record:
- Disassembles the specimen record into fields.
- Calls the validateScientificName() method on the scientificNameService (implemented by fp.services.SciNameServiceParent) passing the individual field values from the record.
- Calls getters getCurationStatus(), getCorrectedScientificName(), getCorrectedAuthor(), getLSID(), getComment(), getServiceName() on the scientificNameService to extract validation results.
- If the result returned by getCurationStatus() is CURATED or Filled_In, replaces the scientificName and scientificNameAuthorship fields in the input specimen record with the results from getCorrectedScientificName() and getCorrectedAuthor() respectively.
- Adds to the input specimen record three fields with labels scinComment, scinStatus, and scinSource using the results from getCurationStatus(), getComment(), and getServiceName() on the scientificNameService.
- Forwards the updated specimen record to downstream actors in workflow.
fp.services.COLService [FP-KurationServices module]
- Injected by akka.FP.Loader into the scientificNameService field of the akka.fp.NewScientificNameValidator actor.
- Derived from fp.services.SciNameServiceParent (to which it defers most method calls from the actor).
- Overrides nameSearchAgainstServices() to look up scientific name and author in the Catalog of Life using the web service at http://www.catalogueoflife.org/col/webservice.
fp.services.SciNameServiceParent [FP-KurationServices]
edu.harvard.mcz.nametools.NameUsage
fp.services.GNISupportingService
org.gbif.nameparser.NameParser
org.gbif.api.model.checklistbank.ParsedName