Index (polyglot 2.3.1 API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
A

absolutename - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.FileInformation
actionPerformed(ActionEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel: The action listener used to handle menu events.
actionPerformed(ActionEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool: Handle action events from menus and buttons.
actionPerformed(ActionEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotMonitor: Action event listener.
actionPerformed(ActionEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotPanel: Handle action events.
actionPerformed(ActionEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS: Handle action events.
actionPerformed(ActionEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC: Handle action events.
add(SoftwareServerAuxiliary.Operation) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application: Add an operation to this application.
add(SoftwareServerAuxiliary.Script) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application: Add an operation to this application.
add(SoftwareServerAuxiliary.Subtask) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task: Add a subtask to the list.
add(String, String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task: Create a new subtask for the given application and operation names.
add(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task: Create a new subtask for the given application, operation, file, and format names.
add(SoftwareServerAuxiliary.Task) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task: Merge this task list with another.
add(SoftwareServerClient) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward: Add a software server client.
add(String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward: Add a software server client.
add(SoftwareServerClient) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded: Add a software reuse client.
add(String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded: Add a software reuse client.
add(SoftwareServerAuxiliary.Operation) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application: Add an operation to this application.
add(SoftwareServerAuxiliary.Script) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application: Add an operation to this application.
add(SoftwareServerAuxiliary.Subtask) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task: Add a subtask to the list.
add(String, String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task: Create a new subtask for the given application and operation names.
add(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task: Create a new subtask for the given application, operation, file, and format names.
add(SoftwareServerAuxiliary.Task) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task: Merge this task list with another.
addArgument(int) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add an argument to be typed in when executed.
addArgument(BufferedImage, int) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add an argument to be typed in when executed (note this versions enforces a required desktop!).
addAuthentication(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility: Add authentication to a URL.
addClick(BufferedImage, int, int) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a mouse click.
addCommand(String) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a command to execute.
addConversion(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2: This will add the conversion from input to output using the application for the conversion.
addConversion(String, String, String, double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2: This will add the conversion from input to output using the application for the conversion with the weight.
addConversion(int, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2: This will add the conversion from input to output using the application for the conversion.
addConversion(int, String, String, String, double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2: This will add the conversion from input to output using the application for the conversion with the weight.
addConversion(Conversion2) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2: This will add the conversion to the IOGraph.
addConversions(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2: Add all conversions found on the software server found at the host.
addConversions(String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2: Add all conversions found on the software server found at the host.
addConversions(SoftwareServerClient) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2: Add all conversions found on the software server.
addDesktop(BufferedImage) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a desktop image to the script.
addDoubleClick(BufferedImage, int, int) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a mouse double click.
addEdge(V, V, E) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph: Add an edge to the graph.
addEdge(V, V, E, Double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph: Add an edge to the graph.
addEdgeOnce(V, V, E) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph: Add an edge to the graph only if it doesn't exist.
addGraph(IOGraph<V, E>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph: Merge another I/O-graph into this one.
addKey(char) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add characters as input from the keyboard.
addLine(String) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a line to the script.
addNegativeArea(int[]) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a negative area for the NEXT captured desktop image!
addParameter(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
addParameter(int, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2
addPopupMenu(JMenuItem) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel: Add a new item to the popup menu.
addPositiveArea(int[]) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a positive area for the NEXT captured desktop image!
address - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation
addScriptedOperations(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer: Add operation scripts within the given directory.
addScriptedOperations(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer: Add operation scripts within the given directory.
addScriptedOperations(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer: Add operation scripts within the given directory.
addServer(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet: Record the existence of a software server and the applications/tasks it provides.
addSubtasks(String, String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task: Add a sequence of subtasks that will allow an application to go from the input to the output format.
addSubtasks(String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task: Add a sequence of subtasks that will allow an application to go from the input to the output format.
addSubtasks(String, String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task: Add a sequence of subtasks that will allow an application to go from the input to the output format.
addSubtasks(String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task: Add a sequence of subtasks that will allow an application to go from the input to the output format.
addTarget(int[][]) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a target image to the script.
addTargetClick(int[][], int, int, int, int) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a target mouse click.
addText(String) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add text input from the keyboard.
addText(BufferedImage, String) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add text input from the keyboard (note this versions enforces a required desktop!).
addToLastLine(char) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript: Add a character to the last line of the script.
addVertex(V) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph: Add a vertex to the graph if not already present.
advanceLine(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder: advances a string so its first word is flushed
advanceParam(FileWriter, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder: adds to the AHK script a call to AdvanceParam which gets the AHK script to move on to the next param in args list (in runtime)
AHKScriptBuilder - Class in edu.illinois.ncsa.isda.softwareserver
AHKScriptBuilder() - Constructor for class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder
alias - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
alias - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
alias - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
alias - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
Alive() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy: Used to verify if the server is responding
Alive() - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
alive() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy: Used to verify if the server is responding
alive() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
appIcons(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy: Returns the requested icon file if available.
appIcons(String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
appIcons(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy: Returns the requested icon file if available.
appIcons(String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
application - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation
application - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
application - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Subtask
application - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.TaskInfo
application - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation
application - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
application - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Subtask
application - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.TaskInfo
application_alias - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.RemoteTaskInfo
application_alias - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.RemoteTaskInfo
application_name - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.RemoteTaskInfo
application_name - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.RemoteTaskInfo
arrangePointsInRings(Vector<PolyglotAuxiliary.Point2D>, Vector<Boolean>, int, int, int, double) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel: Set vertex positions to form a circular graph.




B

bellmanFord(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Bellman Ford shortest path.

Benchmark - Class in edu.illinois.ncsa.isda.softwareserver

Benchmark for software servers.

Benchmark() - Constructor for class edu.illinois.ncsa.isda.softwareserver.Benchmark
 
busy() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to verify if the server is busy

busy() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 




C

cache(int, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Cache the file data.

cache() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Cache all task input data if not already.

cache(int, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Cache the file data.

cache() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Cache all task input data if not already.

checkComparisonASync(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.VersusServiceCompare
 
checkConversions(String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Check the conversions claimed by the given script.

checkin(String, int, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Update status of job task (TODO: needs to do some checks to ensure validity of result!)

checkServers() - Static method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Remove dead servers and their associated tasks.

clear() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Clear the graph.

close() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Close the connection to the software reuse server.

close() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
close() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Close the connection to the Polyglot server.

close() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotPanel

Close polyglot connections.

close() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Close all software server client connections and stop the PolyglotSteward thread.

close() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Close anything that needs to be closed.

close() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Close all software reuse client connections.

close() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Close the connection to the software server.

colorGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.DistributedSoftwareIOGraphPanel

Color the graph according to software servers.

command - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptType
 
command_head - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptType
 
command_tail - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptType
 
comment - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptType
 
compare(String, String, String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.VersusCompare

Compare two files.

compare(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.VersusCompare

Compare two files.

compare(String, String, String, String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.VersusServiceCompare
 
compareRaw(String, String, String, String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.VersusServiceCompare
 
compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Data

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.RemoteTaskInfo

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.TaskInfo

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Compare to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG.UniqueString

Compare this string to another object

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Point2D

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.SoftwareServerApplication

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Data

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.RemoteTaskInfo

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.TaskInfo

Compare this object to another object.

compareTo(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Compare to another object.

completedTasks() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to know the number of task completed since the server starts

completedTasks() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
complexity() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Display information regarding the complexity of the graph.

complexity() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Print statistics about the IOGraph.

compute() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Panel
 
computePath() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel
 
configureScript(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Configure the given ICR script(s) to run on the current machine.

configureScript(String) - Method in class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Configure the given ICR script(s) to run on the current machine.

connect() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

Connect to the VNC server.

continuousParam - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
Conversion2 - Class in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted

Conversion using an application from input to output.

Conversion2(int, String, String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
Conversion2(int, String, String, String, double) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
conversions() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded
 
convert(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
convert(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot

Convert a files format.

convert(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Convert a files format.

Convert(UriInfo, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to list all the output formats produced by the polyglot server

Convert(UriInfo, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
convert(SoftwareServerAuxiliary.FileData, Vector<PolyglotAuxiliary.Conversion<SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Application>>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Convert a files format.

convert(SoftwareServerAuxiliary.FileData, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Convert a files format.

convert(String, String, Vector<PolyglotAuxiliary.Conversion<SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Application>>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Convert a files format.

convert(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Convert a files format.

convert(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Convert a files format.

convert(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Convert a files format.

convert(SoftwareServerAuxiliary.FileData, Vector<PolyglotAuxiliary.Conversion<SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Application>>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Convert a files format.

convert(SoftwareServerAuxiliary.FileData, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Convert a files format.

convert(String, String, Vector<PolyglotAuxiliary.Conversion<SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Application>>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Convert a files format.

convert(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Convert a files format.

convertAndEmail(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot

Convert a files format and email the result.

convertAndEmail(int, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot

Convert a files format and email the result.

convertAndEmail(String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot

Convert a files format and email the result.

convertAndEmail(int, String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot

Convert a files format and email the result.

convertAndEmail(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Convert a files format and email result.

convertAndEmail(int, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Convert a files format and email result.

convertAndEmail(String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Convert a files format and email result.

convertAndEmail(int, String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Convert a files format and email result.

ConvertFile(UriInfo, String, HttpServletRequest, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to post a conversion request to the softwareserver

ConvertFile(UriInfo, String, HttpServletRequest, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
ConvertFmt(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to obtain a list the input formats associated with the output format

ConvertFmt(String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
convertLater(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot

Convert a files format (asynchronously).

convertOverREST(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Convert a file's format using the Software Server's REST interface.

createCommandlineOption(String, String, String, String, String, String, boolean) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Creates new command line option around a workflow tool parameter or data
 input/output

createDataWolfTool(String, String, String, String, String, JsonObject) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Creates a new DataWolf tool.

createDataWolfTool(File) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Calls DataWolf REST endpoint to create the DataWolf tool

createFrame() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.DistributedSoftwareIOGraphPanel

Add this panel to a frame.

createFrame() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotMonitor

Add this panel to a frame.

createHTMLList(String, String, boolean, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTUtilities

Convert a line separated list into an HTML list of links.

createTests() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphWeightsToolHeadless
 
createWorkflow(String, String, JsonObject) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Creates a workflow with the given title, description and creator.

createWorkflowStep(JsonObject, JsonObject) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Creates a new workflow step for a DataWolf tool

createWorkflowToolData(String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Creates a new workflow tool data

createWorkflowToolParameter(String, String, boolean, String, boolean, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Creates a new workflow tool parameter

CSRPanel - Class in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted
 
CSRPanel(URL) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.CSRPanel
 




D

DataWolf - Class in edu.illinois.ncsa.isda.softwareserver.datawolf
 
debug(SoftwareServerClient) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Debug tests for a SoftwareReuseClient.

debug(SoftwareServerClient) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Debug tests for a SoftwareReuseClient.

debug1() - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Debug shortest paths.

defineAdvanceParam(FileWriter, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script AdvanceParam function definition - this function makes the AHK script to move on to the next param in args list (in runtime)

defineLookupParam(FileWriter, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script LookupParam function definition - this function checks whether a specific param is present in the script args

defineWin(FileWriter, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script Win function definition - this function makes the AHK script wait for a window to show

deleteStoreFiles(String, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Delete temporary files for a session under parent_folder
 
 session temporary files' names start with "sessionid_"
 session log is ".session_" + session + ".log"

dijkstra(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Dijstra shortest path.

discoveryAMQ_pull() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Discover Software Servers consuming on the given RabbitMQ bus (adds them to I/O-graph).

discoveryAMQ_push() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Discover Software Servers pushing info to a seperate regristration RabbitMQ bus (adds them to I/O-graph).

discreteParam - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
discreteParamSelected - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
displayConversionJob(String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphWeightsToolHeadless

Display information about a specific job.

displayJobs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Display tests jobs in the jobs panel.

DistributedSoftwareIOGraphPanel - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

An IOGraph Panel which accepts only vertices and edges of type String which have information specific
 to software that is distributed among multiple machines.

DistributedSoftwareIOGraphPanel(IOGraph<String, String>, int) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.DistributedSoftwareIOGraphPanel

Class constructor.

DistributedSoftwareServerRestlet - Class in edu.illinois.ncsa.isda.softwareserver

A restful interface to multiple software servers.

DistributedSoftwareServerRestlet() - Constructor for class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet
 
domains - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.ScriptHeader
 
downloadFile(String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

download file from given url

dragEnter(DropTargetDragEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F
 
dragExit(DropTargetEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F
 
dragOver(DropTargetDragEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F
 
drop(DropTargetDropEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F

Handle drop events.

dropActionChanged(DropTargetDragEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F
 




E

edge - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Conversion
 
edge_colors - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel
 
edge_strings - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel
 
edu.illinois.ncsa.isda.softwareserver - package edu.illinois.ncsa.isda.softwareserver

The Software Server package.

edu.illinois.ncsa.isda.softwareserver.datawolf - package edu.illinois.ncsa.isda.softwareserver.datawolf
 
edu.illinois.ncsa.isda.softwareserver.experimental - package edu.illinois.ncsa.isda.softwareserver.experimental
 
edu.illinois.ncsa.isda.softwareserver.parametrized - package edu.illinois.ncsa.isda.softwareserver.parametrized

Software Servers supporting parameters.

edu.illinois.ncsa.isda.softwareserver.polyglot - package edu.illinois.ncsa.isda.softwareserver.polyglot

The Polyglot package.

edu.illinois.ncsa.isda.softwareserver.polyglot.weighted - package edu.illinois.ncsa.isda.softwareserver.polyglot.weighted

Polyglot tools supporting weighted and parameterized I/O-graphs.

end_time - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation
 
Endpoints(UriInfo, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to list the of endpoints in the polyglot server

Endpoints(UriInfo, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
equals(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application

Compare this object to another object for equality.

equals(Object) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation

Compare this object to another object for equality.

executables - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
 
executables - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
executables - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
 
executables - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 
execute() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Execute the script.

execute(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Execute a script.

execute() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Execute this script.

execute() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Execute the this task list and return the result of the last task.

execute(String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Execute the this task list and save the result of the last task to the specified path.

execute(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Execute a script.

execute() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Execute this script.

execute() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Execute the this task list and return the result of the last task.

execute(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Execute the this task list and save the result of the last task to the specified path.

executeAndWait(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Execute a script.

executeAndWait(String, String, String, int, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Execute this script.

executeAndWait(String, String, String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Execute this script.

executeAndWait() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Execute this script.

executeAndWait(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Execute a script.

executeAndWait(String, String, String, int, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Execute this script.

executeAndWait(String, String, String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Execute this script.

executeAndWait() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Execute this script.

executeAndWait(String, int, boolean, boolean) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Execute the given command.

executeAndWait(String, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Execute the given command.

executeTask(String, int, Vector<SoftwareServerAuxiliary.Subtask>, Vector<String>) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Execute the given task.

executeTask(int, String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Execute a task.

executeTask(String, int, Vector<SoftwareServerAuxiliary.Subtask>) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Execute the given task.

executeTask(int, String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Execute a task.

executeTask(int, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Execute a task.

executeTaskAtomically(String, int, Vector<SoftwareServerAuxiliary.Subtask>) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Execute the given task (synchronized version).

executeTaskAtomically(int, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Execute a task (synchronized version).

executeTaskLater(int, String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Execute a task asynchronously.

executeTaskLater(int, String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Execute a task asynchronously.

executeTaskLater(int, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Execute a task asynchronously.

executeTasks(Vector<SoftwareServerAuxiliary.Subtask>) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Execute task on the software reuse server.

executeTasks(Vector<SoftwareServerAuxiliary.Subtask>) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Execute task on the software reuse server.

executeTasksLater(Vector<SoftwareServerAuxiliary.Subtask>) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Asynchronously execute a task on the software reuse server.

executeTasksLater(Vector<SoftwareServerAuxiliary.Subtask>) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Asynchronously execute a task on the software reuse server.

exists(int, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Check if the file exists in the cache.

exists(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Check if the specified file exists.

exists(int, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Check if the file exists in the cache.

existsURL(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Check if the specified URL exists.

existsURL_bak(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Deprecated.

exit_operation - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
 
exit_operation - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
 
ext - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.FileInformation
 
extension - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptType
 




F

File(UriInfo, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to download a file form polyglot server

File(UriInfo, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
filename - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
filename - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.FileInformation
 
filename - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation
 
filename - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 
fileOrDir(UriInfo, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns a link to either a produced file or to a directory tree

fileOrDir(UriInfo, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
filesize - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation
 
findFilePath(File, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder
 
finishScript(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds definition of used functions to the end of AHK script

FLAG - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.FileInformation
 
Form(UriInfo, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to obtain a list of actions that can be performed (get, post)

Form(UriInfo, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
form() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns a list of actions that can be performed (get or post or convert)

form() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
formatToken(String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

formats a string based on "path file" definitions, adding a prefix and a suffix

formPost(MultipartFormDataInput, String, String, UriInfo, HttpServletRequest, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Process a file submitted via the web form and return a link to the produced file

formPost(MultipartFormDataInput, String, String, UriInfo, HttpServletRequest, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
formPost(MultipartFormDataInput, String, String, UriInfo, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Process a file submitted via the web form and return a link to the produced file

formPost(MultipartFormDataInput, String, String, UriInfo, String, String, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
Forms(UriInfo, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Return a web form to interact with the Software Server

Forms(UriInfo, String, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 




G

generateFormatJSONString(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

goes over the all "path" files to build the JSON string that defines the conversion to an output format

generateHeader(String, String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

generates the header for the script

generateJSONStringRec(BufferedReader) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

goes over a file "path" to build the JSON string based on the params defined in the file

generateParam(BufferedReader) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

generates JSON string for a param (including nested params)

generateParameterJSONString(File) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

wraps rec function that goes over a file "path" to build the JSON string

generateScript(String, File) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

wraps calls to generateScriptRec, so optional actions may be skipped if the param was not selected

generateScriptRec(BufferedReader, FileWriter, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

generates the AHK script

get(int) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Get a task from the list.

get() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG.UniqueString

Get the string.

get(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Retrieve the specified software server client.

get(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Retrieve the specified software reuse client.

get(int) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Get a task from the list.

getAbsoluteName() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Get the files absolute name.

getAbsoluteName() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Get the files absolute name.

getActiveEdges() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the list indicating which edges are currently active.

getActiveVertices() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Determine and return which vertices are being used by the currently active edges.

getAdjacencyList() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the adjacency list representing graph edges.

getAlias() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Get the script alias.

getAlias(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Return the application alias from a filename

getApplication() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
getApplicationOperation(String, String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Find a suitable application/operation given the desired application, operation, and data.

getApplicationOperation(String, String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Find a suitable application/operation given the desired application, operation, and data.

getApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Get the applications available.

getApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Get the utilized applications.

getApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Get the list of applications available on the software reuse server.

getApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get the applications available.

getApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

List of all applications known to the IOGraph.

getApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get the utilized applications.

getApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Get the list of applications available on the software reuse server.

getApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Get the applications available.

getApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get the applications available.

getApplicationsJson() - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet
 
getApplicationStack() - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Get an icon representation of the available software.

getApplicationStack() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get an icon representation of the available software.

getApplicationStack() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get an icon representation of the available software.

getApplicationStack(Vector<SoftwareServerAuxiliary.Application>) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTUtilities

Get an icon representation of the available software.

getApplicationString(String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Get the string associated with the given application alias

getApplicationString(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Get the string associated with the given application alias

getApplicationTaskInputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Get the input formats supported by the given task.

getApplicationTaskInputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get the input formats supported by the given task.

getApplicationTaskInputs(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet
 
getApplicationTaskInputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Get the input formats supported by the given task.

getApplicationTaskInputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get the input formats supported by the given task.

getApplicationTaskInputsOutputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Get the input and output formats supported by the given task.

getApplicationTaskInputsOutputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get the input and output formats supported by the given task.

getApplicationTaskInputsOutputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Get the input and output formats supported by the given task.

getApplicationTaskInputsOutputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get the input and output formats supported by the given task.

getApplicationTaskOutputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Get the output formats supported by the given task.

getApplicationTaskOutputs(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get the output formats supported by the given task from a known input format.

getApplicationTaskOutputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get the output formats supported by the given task.

getApplicationTaskOutputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Get the output formats supported by the given task.

getApplicationTaskOutputs(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get the output formats supported by the given task.

getApplicationTaskParameters(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet
 
getApplicationTasks(String) - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Get the tasks available for the given application.

getApplicationTasks(Vector<SoftwareServerAuxiliary.Application>) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Get the tasks available for each of the given applications.

getApplicationTasks(String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get the tasks available for the given application.

getApplicationTasks(Vector<SoftwareServerAuxiliary.Application>) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Get the tasks available for each of the given applications.

getApplicationTasks(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Get the tasks available for the given application.

getApplicationTasks(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get the tasks available for the given application.

getAssociatedInputScripts() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Search this scripts path for input scripts associated with this application.

getAssociatedInputScripts() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Search this scripts path for input scripts associated with this application.

getAssociatedOutputScripts() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Search this scripts path for output scripts associated with this application.

getAssociatedOutputScripts() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Search this scripts path for output scripts associated with this application.

getAuxiliaryInterfacePane() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Return an auxiliary interface pane.

getCacheFilename(int) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Get the file name of the cached file.

getCacheFilename(int) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Get the file name of the cached file.

getCacheName(int) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Get the name of the cached file.

getCacheName(int) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Get the name of the cached file.

getCachePath() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Get the servers cache path.

getCachePath() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get the servers cache path.

getClients() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get a list of connected client machines.

getCommand(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Get the execution command for the given script.

getCommand(String, String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Get the execution command for the given script.

getCommand(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Get the execution command for the given script.

getCommand(String, String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Get the execution command for the given script.

getCompletedTaskCount() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Get the number of completed tasks.

getCompletedTaskCount() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get the number of completed tasks.

getConversion(String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the conversion possessing the given name, input, and output

getConversion(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2
 
getConversions(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Parse a string containing conversion information

getConversions() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

List of all conversions known to the IOGraph.

getConvertForm() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get a web form interface for converting via this restful service.

getConvertForm() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get a web form interface for converting via this restful service.

getConvertForm(Vector<SoftwareServerAuxiliary.Application>, Vector<TreeSet<SoftwareServerAuxiliary.TaskInfo>>) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTUtilities

Get a web form interface for converting via this restful service.

getData() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Get the files data.

getData() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Get the files data.

getDistributedInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
getDistributedInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get a string only version of this IOGraph encoded with host machines.

getDistributedInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get a string only version of this IOGraph encoded with host machines.

getDistributedInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get a string only version of this IOGraph encoded with host machines.

getDistributedInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get a string only version of this IOGraph encoded with host machines.

getDomain(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the set of all vertices that can reach the target vertex.

getDomain(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Return the list of all possible conversions reaching the vertex.

getDomainStrings() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get a set of all vertices that can reach other vertices.

getDomainStrings(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get a set of all vertices that can reach the target vertex.

getEdgeInputs(E) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get an edges inputs.

getEdgeOutputs(E) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get an edges outputs.

getEdges() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the graph edges.

getEdgeStrings() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the string representations for the edges.

getEdgeWeight(V, V, E) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Return the weight associated with this conversion.

getEndpointCommaSeparatedValues(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Query a restlet endpoint that responds with lines of comma separated values.

getEndpointValues(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Query a restlet endpoint that responds with a line separated text list of values.

getExecutables() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Get the executables called by the script.

getExecutables() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Get the executables called by the script.

getFilename(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Parse the filename from the cached filename.

getFilename(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Parse the filename from the cached filename.

getFilename(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Parse the filename from the cached public filename (leaves on prepended public output directories!).

getFilenameName(String, boolean) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get the name of a file from the cached public filename (i.e.

getFileSize(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Get the size of a local or remote file.

getFileSizeHR(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Get the size of a local or remote file in a human readable form.

getForm(boolean, String, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Get a web form interface for this restful service.

getForm() - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Get a web form interface for this restful service.

getForm(boolean, String, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get a web form interface for this restful service.

getForm() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get a web form interface for this restful service.

getForm(boolean, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet

Get a web form interface for this restful service.

getForm() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet

Get a web form interface for this restful service.

getForm(Polyglot, boolean, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTUtilities

Get a web form interface for this restful service.

getForm(boolean, String, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get a web form interface for this restful service.

getForm() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get a web form interface for this restful service.

getForm(Vector<SoftwareServerAuxiliary.Application>, Vector<TreeSet<SoftwareServerAuxiliary.TaskInfo>>, TreeMap<String, SoftwareServerAuxiliary.Application>, boolean, String, boolean) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTUtilities

Get a web form interface for this restful service.

getFormat() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Get the files format.

getFormat() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Get the files format.

getFormat() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FormatParameters
 
getFormat() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Get the files format.

getFormat() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Get the files format.

getFormats() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Get the files formats, if multiple extensions.

getFormats() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Get the files formats, if multiple extensions.

getId() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
getInput() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
getInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
getInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get the available inputs, outputs, and conversions.

getInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get the available inputs, outputs, and conversions.

getInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get the available inputs, outputs, and conversions.

getInputOutputGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get the available inputs, outputs, and conversions.

getInputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
getInputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
getInputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get the inputs available.

getInputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get the inputs available for the given output type.

getInputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get the inputs available.

getInputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get the inputs available for the given output type.

getInputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get the inputs available.

getInputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get the inputs available for the given output type.

getInputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get the inputs available.

getInputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get the inputs available for the given output type.

getInstance() - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.DataWolf

Returns an object containing information about the configured DataWolf
 Server

getIOGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get the I/O-graph.

getIOGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.CSRPanel
 
getIOGraph() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get the I/O-graph.

getIOGraphPanel() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.CSRPanel
 
getIOGraphStrings() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get a string only version of this IOGraph.

getJSParameters(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get the HTML for parameters form

getKillCount() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Get the number of times the kill operation has been used.

getKillCount() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get the number of times the kill operation has been used.

getLastSession(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get the last session, the highest number, based on the files in the given directory.

getMaxEdgeWeight(int, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the maximum weight among parallel edges between the vertices specified.

getMaxOperationTime() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get the maximum allowed operation time.

getMaxPathWeights(Vector<Integer>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the maximum weights along the path specified.

getMinimumWeight() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Returns the minimum weight a path can be to be considered.

getName() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Get the name of the script.

getName() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Get the files name.

getName() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Get the files name.

getName() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Get the files name.

getName() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Get the files name.

getNegativeAreas() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Get the current set of negative areas.

getNonBusyServer(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Find a non-busy server that can perform the given task.

getOperation() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Get the operation the script performs.

getOperation() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.OperationParameters
 
getOperation(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Get the operation performed by the given script.

getOperation(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Get the operation performed by the given script.

getOperationScriptname(String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Return the name of an associated script for the given operation.

getOperationScriptname(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Return the name of an associated script for the given operation.

getOutput() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
getOutput() - Method in class edu.illinois.ncsa.isda.softwareserver.TimedProcess

Get the process output (stdout and stderr).

getOutputEntries(Pair<String, String>, Double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Given the comparison result from a job create the corresponding entries for the output file.

getOutputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
getOutputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
getOutputs(TreeSet<String>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
getOutputs(String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot

Get the outputs available for the given input type, pruning any that requre more than n hops.

getOutputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get the outputs available.

getOutputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get the outputs available for the given input type.

getOutputs(TreeSet<String>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get the common outputs available for the given input types.

getOutputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get the outputs available.

getOutputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get the outputs available for the given input type.

getOutputs(TreeSet<String>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get the common outputs available for the given input types.

getOutputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get the outputs available.

getOutputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get the outputs available for the given input type.

getOutputs(String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get the outputs available for the given input type.

getOutputs(TreeSet<String>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get the common outputs available for the given input types.

getOutputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get the outputs available.

getOutputs(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get the outputs available for the given input type.

getOutputs(TreeSet<String>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get the common outputs available for the given input types.

getParallelEdges(V, V, E) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get a list of edges parallel to the given edge.

getParameters() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
getParamSelections() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.OperationParameters
 
getPath(Vector<Integer>, int, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Follow a path back from target to source given the single source shortest paths from the source.

getPathString(Vector<Integer>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Convert a path into a string representation.

getPopupMenu() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Panel
 
getPort() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Get the port the server is listening to.

getPort() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Get the port this client is connect to.

getPort() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get the port the server is listening to.

getPort() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Get the port this client is connect to.

getPositiveAreas() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Get the current set of positive areas.

getPublicIP() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get the public IP determined by the software server.

getRange(int, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Return a set of all reachable vertices from the given source.

getRange(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Return a set of all reachable vertices from the given source.

getRange(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Return the list of all possible conversions starting at the vertex.

getRangeIntersection(TreeSet<Integer>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the range intersection of the vertices in the given set.

getRangeIntersectionStrings(TreeSet<String>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the range intersection of the vertices in the given set.

getRangeStrings() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Returns a set of vertex strings that are reachable from other vertices.

getRangeStrings(String, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Returns a set of vertex strings that are reachable from a given source vertex.

getRangeStrings(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Returns a set of vertex strings that are reachable from a given source vertex.

getResult(String, int, Vector<SoftwareServerAuxiliary.Subtask>) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Get the result of the given task (i.e.

getResult(String, int, Vector<SoftwareServerAuxiliary.Subtask>) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Get the result of the given task (i.e.

getScriptType(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptTypes

Retrieve info on a script type.

getScriptType(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptTypes

Retrieve info on a script type.

getServer() - Method in class edu.illinois.ncsa.isda.softwareserver.datawolf.DataWolf

Returns the DataWolf server endpoint

getServer() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Get the server this client is connected to.

getServer() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Get the server this client is connected to.

getServers() - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Get the software servers registered to this master service.

getServers() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
getServers() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get a list of connected software reuse servers.

getServers() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get a list of connected software servers.

getServers() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get a list of connected software servers.

getServers() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get a list of connected software reuse servers.

getSession() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Get a new session number.

getSession(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Parse the session id from the cached filename.

getSession() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get a new session number.

getSession(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Parse the session id from the cached filename.

getSession(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Parse the session id from the cached public filename (addressing that some may be in public output directories!).

getShellScript() - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Returns DataWolf tool shell script for calling SoftwareServers

getShellScriptDescriptor() - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Creates a FileDescriptor to associate the shell script with for the
 DataWolf tool.

getShortestConversionPath(String, String, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the shortest list of the conversion tasks required to convert from a given input to a given output.

getShortestConversionPaths(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the shortest list of the conversion tasks required to convert from a given input to a given output.

getShortestConversionPathString(String, String, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the shortest list of the conversion tasks required to convert from a given input to a given output.

getShortestConversionPathStrings(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the shortest list of the conversion tasks required to convert from a given input to a given output.

getShortestPath(String, String, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Returns the shortest path from the input to the output.

getShortestPath(String, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Return a map that shows for each node what conversion to use to get to
 the previous node, resulting in then end finding the path all the way
 back to the source node.

getShortestPaths(int, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Perform a breadth first search from the vertex at the given index and store the resulting paths.

getShortestPaths(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Perform a breadth first search from the vertex at the given index and store the resulting paths.

getShortestWeightedPaths(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Perform Dijkstra's algorithm from the vertex at the given source index and store the resulting paths.

getShortestWeightedPathsOriginal(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph
 
getSoftware() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
getSoftware() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Get the software available.

getSoftware() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get the software available.

getSoftware() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get the software available.

getSoftware() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get the software available.

getSoftwareHosts() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Get the software available, with the hosts they run on.

getSoftwareReuseClient() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Get the associated software reuse client.

getSoftwareReuseClient() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Get the associated software reuse client.

getStatus() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Get the status of the software reuse server.

getStatus() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Get the status of the software reuse server.

getSubtasks() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Get the vector of subtasks.

getSubtasks() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Get the vector of subtasks.

getSystemScripts(TreeSet<String>, String, TreeSet<String>, boolean) - Static method in class edu.illinois.ncsa.isda.softwareserver.ScriptInstaller

Search the CSR for scripts for applications on the local system.

getSystemScripts(TreeSet<String>, String, boolean) - Static method in class edu.illinois.ncsa.isda.softwareserver.ScriptInstaller

Search the CSR for scripts for applications on the local system.

getTask(TreeSet<SoftwareServerAuxiliary.TaskInfo>, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.TaskInfo

Find the task information for the specified task name.

getTask(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Get the task involved in using the given applications to convert the given file to the specified output format.

getTask(TreeSet<SoftwareServerAuxiliary.TaskInfo>, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.TaskInfo

Find the task information for the specified task name.

getTask(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Get the task involved in using the given applications to convert the given file to the specified output format.

getTask(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Get the task involved in using the given applications to convert the given file to the specified output format (treats all extensions as lower case).

getTaskCount() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Get the number of tasks received since starting up.

getTaskCount() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get the number of tasks received since starting up.

getTaskInfo(String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet
 
getTempPath() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Get the servers temp path.

getTempPath() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Get the servers temp path.

getTestFiles(Vector<String>, String, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.ScriptInstaller

Search the CSR for test files for the given scripts.

getTimeStamp() - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Get the current date and time (useful for logs, is thread safe).

getType(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.VersusCompare

Get the data type of the given file based on its extension.

getUniqueEdges() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get a set of the unique edges in the graph.

getUniqueEdgeStrings() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the string representations for the unique edges in the graph.

getUser() - Method in class edu.illinois.ncsa.isda.softwareserver.datawolf.DataWolf

Returns JSON string representing a DataWolf user

getUser() - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Returns DataWolf user as JSON object

getValidApplications() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Returns the list of all applications used when finding the shortest path.

getVertexStrings() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the string representations for the vertices.

getVertexStringsStartingWith(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the string representations for the vertices that start with the given prefix.

getVertices() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Get the graph vertices.

getVertices(Vector<String>) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Point2D

Create vertices from a vector names.

getVertices() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

List of all vertices in the graph.

getWeight() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
getWorkflowTool(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Fetches a DataWolf tool by ID

grindScript(String, int, int, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Check the robustness of the script by running it over and over again.

grindScript(String, int, int) - Method in class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Check the robustness of the script by running it over and over again.





H

handleProcessOutput(Process, boolean) - Static method in class edu.illinois.ncsa.isda.softwareserver.TimedProcess

Handle the output of a process.

heartbeat_pull() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Checks on Software Servers to see if they are still alive by hitting their 'alive' andpoint (removes them from I/O-graph if not).

heartbeat_push() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Checks on Software Servers leaving heartbeats on the regristration queue to see if they are still alive (removes them from I/O-graph if not).

host - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.SoftwareServerApplication
 
HTMLEncodeJob(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Highlight the parts of the job via HTML encoding.

httpGetHandler() - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet
 
httpGetHandler() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet
 
httpGetHandler() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet

Handle HTTP GET requests.

httpGetHandler() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Handle HTTP GET requests.

httpPostHandler(Representation) - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet
 
httpPostHandler(Representation) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet
 
httpPostHandler(Representation) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet

Handle HTTP POST requests.

httpPostHandler(Representation) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet
 
humanReadableBytes(long) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Get bytes in human readable form.





I

icon - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
 
icon - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
 
icr - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
 
in_parameters - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation
 
incrementAndGetJobID() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot

Should be overridden.

incrementAndGetJobID() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Atomically increase current value of job_counter by one and return new jobid

init() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphApplet

Initialize the applet.

init() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotMonitorApplet

Initialize the applet.

init() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Applet

Initialize the applet.

init() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphApplet

Initialize the applet.

initialize() - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Initialize.

initialize() - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Initialize.

inparameters - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
input - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.RemoteTaskInfo
 
input - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Conversion
 
input - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation
 
input - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.RemoteTaskInfo
 
input_data - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Subtask
 
input_data - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Subtask
 
inputFormats - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.ScriptHeader
 
inputs - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation
 
inputs - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
inputs - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.TaskInfo
 
Inputs(UriInfo, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to list all the input formats the polyglot server is able to serve

Inputs(UriInfo, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
inputs - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation
 
inputs - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 
inputs - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.TaskInfo
 
InputsOut(UriInfo, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to list all the input formats that can be converted to output format

InputsOut(UriInfo, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
IOGraph<V extends Comparable,E extends Comparable> - Class in edu.illinois.ncsa.isda.softwareserver.polyglot
 
IOGraph() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph
 
IOGraph(SoftwareServerClient) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Class constructor.

IOGraph(JsonNode, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Class constructor.

IOGraph(String, String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Class constructor (loads data from a CSR database).

IOGraph(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Class constructor (loads data from a CSR database via a web script to bypass database access restrictions).

IOGraph2 - Class in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted

Graph that contains all possible conversions.

IOGraph2() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Create an empty IOGraph.

IOGraph2Applet - Class in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted

An applet to simply hold an IOGraphPanel.

IOGraph2Applet() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Applet
 
IOGraph2Panel - Class in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted

Draw the IOGraph in a panel as well as the list of applications and the path
 when a source and target vertex are selected.

IOGraph2Panel(IOGraph2) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Panel
 
IOGraphApplet - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

An applet to simply hold an IOGraphPanel.

IOGraphApplet() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphApplet
 
IOGraphApplet - Class in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted

An applet to simply hold an IOGraphPanel.

IOGraphApplet() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphApplet
 
IOGraphPanel<V extends Comparable,E extends Comparable> - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A panel/program that displays a graph of input/output operations and allows for the exploration of paths
 among them from a source to a target.

IOGraphPanel() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Class constructor.

IOGraphPanel(IOGraph<V, E>, int) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Class constructor.

IOGraphPanel(IOGraph<V, E>, int, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Class constructor.

IOGraphPanel(IOGraph<V, E>, int, int, int) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Class constructor.

IOGraphPanel(IOGraph<V, E>, int, int, int, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Class constructor.

IOGraphPanel_JUNG<V extends Comparable,E extends Comparable> - Class in edu.illinois.ncsa.isda.softwareserver.polyglot
 
IOGraphPanel_JUNG(IOGraph<V, E>, int) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG

Class constructor.

IOGraphPanel_JUNG(IOGraph<V, E>, int, int, int) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG

Class constructor.

IOGraphPanel_JUNG.ToAbbreviatedStringLabeller<V> - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A class which abbreviates vertex strings during label rendering.

IOGraphPanel_JUNG.ToAbbreviatedStringLabeller() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG.ToAbbreviatedStringLabeller
 
IOGraphPanel_JUNG.UniqueString - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A class that simply wraps a string so that as a comparable it is never equal to another string.

IOGraphPanel_JUNG.UniqueString(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG.UniqueString

Class constructor.

IOGraphWeightsTool - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A program to facilitate in the running of polyglot tests to fill in I/O-Graph edge weights.

IOGraphWeightsTool(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Class constructor.

IOGraphWeightsToolHeadless - Class in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted

A program to facilitate in the running of polyglot tests to fill in I/O-Graph
 edge weights.

IOGraphWeightsToolHeadless(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphWeightsToolHeadless

Class constructor.

isAlive() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Check if connection is alive.

isAlive() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Check if connection is alive.

isBusy() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Is the server busy executing a task?

isBusy() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Check if the software reuse server is busy executing another task.

isBusy() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Is the server busy executing a task?

isBusy() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Check if the software reuse server is busy executing another task.

isEmpty() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Determine if this instance is empty or not.

isEmpty() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Determine if this instance is empty or not.

isJSONRequest(Request) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Check if the given request is for json only.

isPlainRequest(Request) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Check if the given request is for plain text only.

isRunnable(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptTypes

Check if a script of the given type is runnable on the current platform.

isTextOnly(Request) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Check if the given request is for plain text only.





J

jobFolderStatus(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Check the contents of a job folder and return its status.

jobFolderStatus(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphWeightsToolHeadless

Check the contents of a job folder and return its status.





K

keyPressed(KeyEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS
 
keyPressed(KeyEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC
 
keyReleased(KeyEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS
 
keyReleased(KeyEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC
 
keyTyped(KeyEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS
 
keyTyped(KeyEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

Handle key typed events.

kill_operation - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
 
kill_operation - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
 
kills() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to know the number of task killed since the server starts

kills() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 




L

lastClickToDoubleClick() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Upgrade the last single click to a double click.

lastLine() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Get the last line of the script.

layoutVertices() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Panel
 
length() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Get the number of lines in the script.

listApplications(UriInfo, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns a list of applications available in software server

listApplications(UriInfo, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
listen(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Start listening for SoftwareServers.

listen(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Start listening for SoftwareServers.

listInputAndOutputFormats(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns a list of input and output file formats accepted and produced by the application

listInputAndOutputFormats(String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
listInputFormats(UriInfo, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns a list of input file formats accepted by the application

listInputFormats(UriInfo, String, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
listOutputFile(UriInfo, String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns a link to the produced file

listOutputFile(UriInfo, String, String, String, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
listOutputFmts(UriInfo, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Return a list of the file formats produced by the application

listOutputFmts(UriInfo, String, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
listTasks(UriInfo, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns a list of tasks performed by a particular application

listTasks(UriInfo, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
load(String) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Load a script.

load(String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Load the file data into this structure.

load(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Load graph from the given file.

load(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Load the file data into this structure.

load() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to get a measure of the server load

load() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.datawolf.DataWolf
 
loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Initialize based on parameters within the given configuration file.

loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Load a configuration file.

loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotPanel

Initialize based on parameters within the given configuration file.

loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotServer

Initialize based on parameters within the given configuration file.

loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Initialize based on parameters within the given configuration file.

loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotWebInterface

Load a configuration file.

loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphWeightsToolHeadless

Load a configuration file.

loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Load values from a configuration file.

loadConfiguration(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Initialize based on parameters within the given configuration file.

loadEdgeWeights(String, Double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Load edge weights from the given file.

loadFolder(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Load all files of the given extension beneath the given folder.

loadFolder(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphWeightsToolHeadless

Load all files of the given extension beneath the given folder.

loadJobs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Use IOGraph to determine jobs but check if an old test exists as well and update
 it if necessary!

loadJobs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphWeightsToolHeadless

Use IOGraph to determine jobs but check if an old test exists as well and
 update it if necessary!





M

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

AHKScriptBuilder can be called from cmd line by giving 2 arguments: output AHK script directory path and input files directory path

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.Benchmark

Run a benchmark.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Start the restful service.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F

Start the ICRMonkey.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

A main to execute a monkey script from the command line.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

A main for the ICR service.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary

A main for debug purposes.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Startup a software reuse client command prompt.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Start the restful service.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.DistributedSoftwareIOGraphPanel

The main starting point for this program.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

A main for debug purposes.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

The main starting point for this program.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG

The main starting point for this program.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Start the I/O-Graph weights tool.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Command line polyglot interface.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotMonitor

Monitor a Polyglot server.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotPanel

Start the Polyglot file manager, essentially an instance of a PolyglotPanel.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Start the Polyglot REST interface.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet

Start the Polyglot REST interface.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotServer

A main for the Polyglot service.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Command line polyglot interface.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Start the Polyglot Steward.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotWebInterface

A main to start the polyglot web server.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.VersusCompare

Compare two files.

main(String...) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2
 
main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Panel
 
main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphWeightsToolHeadless

Start the I/O-Graph weights tool.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Command line polyglot interface.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Debug an ICR script.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.ScriptInstaller

The script installer main.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS

Start the monkey script session.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

The programs main.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

A main for the ICR service.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary

A main for debug purposes.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Startup a software reuse client command prompt.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to initialize and start the servlet server called the Tiny Java Web Server and Servlet (TJWS) Container.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Start the restful service.

main(String[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

A main for debug purposes.

maxRange - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
memory() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to know the memory available to the server

memory() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
minRange - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
monitor_operation - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
 
monitor_operation - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
 
MonkeyScript - Class in edu.illinois.ncsa.isda.softwareserver

A class representing an monkey script.

MonkeyScript() - Constructor for class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Class constructor.

MonkeyScript(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Class constructor.

MonkeyScript(String, Vector<String>) - Constructor for class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Class constructor.

mouseClicked(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F
 
mouseClicked(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel
 
mouseClicked(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS
 
mouseClicked(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC
 
mouseDragged(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

The mouse dragged listener used to select edges.

mouseDragged(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS

Handle mouse motion events.

mouseDragged(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

Handle mouse motion events.

mouseEntered(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F
 
mouseEntered(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel
 
mouseEntered(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS
 
mouseEntered(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC
 
mouseExited(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F
 
mouseExited(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel
 
mouseExited(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS
 
mouseExited(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC
 
mouseMoved(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel
 
mouseMoved(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS
 
mouseMoved(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC
 
mousePressed(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F

Handle mouse pressed events.

mousePressed(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

The mouse pressed listener used to open the popup menu.

mousePressed(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS

Handle mouse pressed events.

mousePressed(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

Handle mouse pressed events.

mouseReleased(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F
 
mouseReleased(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

The mouse released listener used to de-select edges.

mouseReleased(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS

Handle mouse release events.

mouseReleased(MouseEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

Handle mouse release events.

mouseWheelMoved(MouseWheelEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Handle mouse wheel events.





N

name - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.TaskInfo
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.FileInformation
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.SoftwareServerApplication
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptType
 
name - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.TaskInfo
 
nameForDisplay - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
nameInSoftware - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
nestedParams - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
newFormat(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Create a new FileData instance representing this format.

newFormat(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Create a new FileData instance representing this format.

nextWord(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

returns the next word of a string





O

operation - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.OperationParameters
 
operation - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
operation - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Subtask
 
operation - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 
operation - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Subtask
 
operations - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
 
operations - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
 
os - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptType
 
out_parameters - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation
 
outparameters - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
output - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.RemoteTaskInfo
 
output - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Conversion
 
output - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation
 
output - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.RemoteTaskInfo
 
output_data - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Subtask
 
output_data - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Subtask
 
outputFormats - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.ScriptHeader
 
outputs - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation
 
outputs - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
outputs - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.TaskInfo
 
Outputs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to list all the file formats the polyglot server is able to produce

Outputs() - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
outputs - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation
 
outputs - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 
outputs - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.TaskInfo
 




P

paint(Graphics) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Draw the graph to the given graphics context.

paint(Graphics) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Paint this panel to the given graphics context

paint(Graphics) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS

Draw this panel to the given graphic context.

paint(Graphics) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

Auxiliary code for the VncViewer's VncCanvas paint method.

paintComponent(Graphics) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Draw this component (called during resizing!)

paramSelections - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.OperationParameters
 
parseFormatList(String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Parse a line from a script header containing a format list

parseFormatList(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Parse a line from a script header containing a format list

parseLogfile(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Parses a log file and creates a DataWolf workflow representation.

path - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
path - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.FileInformation
 
path - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 
Polyglot - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

An interface for file format conversion services that contain at its heart an I/O-Graph built
 around a set of Software Server clients.

Polyglot() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot
 
PolyglotAuxiliary - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

Helper classes for the polyglot package.

PolyglotAuxiliary() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary
 
PolyglotAuxiliary.Conversion<V extends Comparable,E> - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A simple structure to store a single conversion task.

PolyglotAuxiliary.Conversion() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Conversion
 
PolyglotAuxiliary.Conversion(V, V, E) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Conversion

Class constructor.

PolyglotAuxiliary.FileInformation - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A structure to hold file information.

PolyglotAuxiliary.FileInformation(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.FileInformation

Class constructor to initialize the file information.

PolyglotAuxiliary.Point2D - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A convenient structure for holding vertex information when displaying an IOGraph.

PolyglotAuxiliary.Point2D(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Point2D

Class constructor.

PolyglotAuxiliary.RequestInformation - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A structure to store information about Polyglot requests.

PolyglotAuxiliary.RequestInformation(String, String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation

Class constructor.

PolyglotAuxiliary.SoftwareServerApplication - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A structure to store information about applications on a Software Server.

PolyglotAuxiliary.SoftwareServerApplication(String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.SoftwareServerApplication

Class constructor.

PolyglotClient - Class in edu.illinois.ncsa.isda.softwareserver.polyglot
 
PolyglotClient(String, int) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotClient

Class constructor.

PolyglotException - Exception in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted
 
PolyglotException(String) - Constructor for exception edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotException
 
PolyglotException(String, Throwable) - Constructor for exception edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotException
 
PolyglotMonitor - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A tool to monitor the status of a Polyglot server.

PolyglotMonitor(String, int) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotMonitor

Class constructor.

PolyglotMonitor(PolyglotSteward) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotMonitor

Class constructor.

PolyglotMonitorApplet - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

An applet to hold a PolyglotMonitor.

PolyglotMonitorApplet() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotMonitorApplet
 
PolyglotPanel - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A panel with a file manager look and feel designed for convenient file format conversions.

PolyglotPanel(JFrame, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotPanel

Class constructor.

PolyglotRESTEasy - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A restful interface for a polyglot steward.

PolyglotRESTEasy() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Class constructor.

PolyglotRESTEasyInterface - Interface in edu.illinois.ncsa.isda.softwareserver.polyglot
 
PolyglotRestlet - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A restful interface for a polyglot steward.

PolyglotRestlet() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet
 
PolyglotRESTUtilities - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

Polyglot REST interface utility functions.

PolyglotRESTUtilities() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTUtilities
 
PolyglotServer - Class in edu.illinois.ncsa.isda.softwareserver.polyglot
 
PolyglotServer(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotServer

Class constructor.

PolyglotSteward - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A class that coordinates the use of several software server clients via I/O-graphs
 to perform file format conversions.

PolyglotSteward() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Class constructor.

PolyglotSteward(PolyglotSteward) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Class copy constructor.

PolyglotStewardAMQ - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A class that coordinates the use of several software servers to perform file format conversions.

PolyglotStewardAMQ() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Class constructor.

PolyglotStewardAMQ(boolean) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Class constructor.

PolyglotStewardThreaded - Class in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted

A class that coordinates the use of several software reuse clients via I/O-graphs to perform file format conversions.

PolyglotStewardThreaded() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Class constructor.

PolyglotStewardThreaded(PolyglotStewardThreaded) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Class copy constructor.

PolyglotWebInterface - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A background process that monitors a folder for conversion tasks.

PolyglotWebInterface(String, boolean) - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotWebInterface

Class constructor.

possibleValues - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
postFile(String, String, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Post a file to a URL.

postFile(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Post a file to a URL.

prepareExtraParams(File) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

searches for params in "path" files and adds necessary AHK code when found

print() - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Display this script.

print(Vector<SoftwareServerAuxiliary.Application>) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application

Display information on available applications.

print(Vector<SoftwareServerAuxiliary.Operation>) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation

Display operation information.

print(String, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
print() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Print information about the given tasks.

print(Vector<SoftwareServerAuxiliary.Subtask>) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Print the given tasks.

print(Vector<SoftwareServerAuxiliary.Subtask>, Vector<SoftwareServerAuxiliary.Application>) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Print the given tasks.

print(Vector<SoftwareServerAuxiliary.Application>) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application

Display information on available applications.

print(Vector<SoftwareServerAuxiliary.Operation>) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation

Display operation information.

print() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptTypes

Display all script type information.

print() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Print information about the given tasks.

print(Vector<SoftwareServerAuxiliary.Subtask>) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Print the given tasks.

print(Vector<SoftwareServerAuxiliary.Subtask>, Vector<SoftwareServerAuxiliary.Application>) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Print the given tasks.

print(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Append a string to a file.

printApplicationOperation(Pair<Integer, Integer>) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Print information about a given application/operation.

printApplicationOperation(Pair<Integer, Integer>) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Print information about a given application/operation.

printEdgeInformation() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Display information about each unique edge.

printEdgeInformation(E) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Display information about an edge.

printErrorMessage(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Returns an error message

printErrorMessage(String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
printErrorMessage(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns an error message

printErrorMessage(String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
println(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Append a line to a file.

printMaxWeightedEdge() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Find the edge with the largest weight.

printMinWeightedEdge() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Find the edge with the smallest weight.

printMinWeightedVertex() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Find the vertex with the shortest combined traversed weight when visited from other vertices.

process_jobs() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Process jobs pending in mongo.

processGet(UriInfo, String, String, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns a link to the produced file

processGet(UriInfo, String, String, String, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
processNewHeader() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
processOldHeader(String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
processors() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to know the number of processor available to the server

processors() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
processPost(MultipartFormDataInput, String, String, UriInfo, HttpServletRequest, String, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

This is an auxiliary method working for the formPost() and the taskPost() methods.

processPost(MultipartFormDataInput, String, String, UriInfo, String, String, String, String, boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

This is an auxiliary method working for the formPost() and the taskPost() methods.

purgeJobs() - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Purge current and previous jobs.





Q

queryEndpoint(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet

Query an endpoint.

queryEndpoint(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Query an endpoint.

queryEndpoint(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTUtilities

Query an endpoint.





R

rabbitMQHandler(String, String, int, Vector<SoftwareServerAuxiliary.Application>, String, String, String, String, String, boolean, boolean, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTUtilities

Have a Software Server listen to a RabbitMQ bus for jobs.

range - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
readLine(BufferedReader) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

reads a new line from the input buffer

readURL(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Read the contents of the specified URL and store it in a string.

readURL(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Read the contents of the specified URL and store it in a string.

reboot() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to reboot the server remotely in case it is necessary

reboot() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
rebootMachine() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Reboot the machine the software server is running on.

rebootMachine() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Reboot the machine the software server is running on.

registration(String, String, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTUtilities

Create a thread to send registration messages to the RabbitMQ SS-registration queue.

removeCredentials(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Remove credentials in the url string, like username:passwd

removeDoubleQuotes(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

removes double quotes from a string (first and last chars)

removeEdges(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Remove edges matching the given string.

removeParameters(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTUtilities

Remove parameters from a URL.

repaint() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

Repaint the VncViewer's VncCanvas.

replaceScriptFileInfo(File[]) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder
 
replaceStringInScript(File, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder
 
requestNewSession() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Request a new session.

requestNewSession() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Request a new session.

Requests() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to obtain of a list of the processed task since startup

Requests() - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
reset() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Reset the IOGraph.

reset() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to reset the server remotely in case it is necessary

reset() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
resetCounts() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Reset task counters to zero.

resetCounts() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Reset task counters to zero.

resetWeights() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Sets all the weights of all conversions to unknown.

retrieveData(SoftwareServerAuxiliary.CachedFileData) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Retrieve cached file data from the software reuse server.

retrieveData(SoftwareServerAuxiliary.CachedFileData) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Retrieve cached file data from the software reuse server.

retrieveDataLater(SoftwareServerAuxiliary.CachedFileData) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Synchronously retrieve cached file data from the server.

retrieveDataLater(SoftwareServerAuxiliary.CachedFileData) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Synchronously retrieve cached file data from the server.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F

Background thread to record user interaction.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Process ICR requests.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Run the current test.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotMonitor

Continuously check the status of the Polyglot server and display the results.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotServer

Process Polyglot requests.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Clean up lost connections.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

The main thread.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotWebInterface

The starting point for the thread that monitors the uploads directory for tasks.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Clean up lost connections.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS

Background thread to capture screen shots and record interaction.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Process ICR requests.

run() - Method in class edu.illinois.ncsa.isda.softwareserver.TimedProcess

The starting point for the thread that will monitor the process.

runTests() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraphWeightsToolHeadless

Run the current test.





S

save(String) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Save the script to the given path.

save(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Save the file data to a file.

save(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Save graph to the given file.

save(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Save the file data to a file.

saveWorkflow(JsonObject, boolean) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Calls the DataWolf REST endpoint to save the workflow.

screen() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to have a look at the server screen and determine if the
 server must be restarted due to hang application.

screen() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
script - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation
 
script - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation
 
scriptChoose(String, FileWriter, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that choose an item from a dropdown menu based on the definitions in the input file

scriptClick(String, FileWriter, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that click a button based on the definitions in the input file

scriptComment(String, FileWriter, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds a comment to the AHK script file

ScriptDebugger - Class in edu.illinois.ncsa.isda.softwareserver

A tool for debugging ICR scripts.

ScriptDebugger(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Class constructor.

scriptIfWin(String, FileWriter, String, BufferedReader, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

not currently in use
 adds functionality to AHK script to deal with window pop ups that may or may not appear

scriptInputParam(String, FileWriter, BufferedReader, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds a new param to the AHK script

scriptInsert(String, FileWriter, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that insert text into an "edit box" based on the definitions in the input file

ScriptInstaller - Class in edu.illinois.ncsa.isda.softwareserver

A program to setup a software reuse server on the local machine.

ScriptInstaller() - Constructor for class edu.illinois.ncsa.isda.softwareserver.ScriptInstaller
 
scriptMenu(String, FileWriter, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that choose a menu item based on the definitions in the input file

scriptParamButton(String, FileWriter, BufferedReader, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that click (or not) a button according to the param selection

scriptParamCheckbox(String, FileWriter, BufferedReader, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that check/unchek a checkbox according to the param selection

scriptParamDropdownMenu(String, FileWriter, BufferedReader, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that choose an item of a dropdown menu according to the param selection

scriptParamMenu(String, FileWriter, BufferedReader, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that choose an item of a menu according to the param selection

scriptParamSaveText(String, FileWriter, BufferedReader, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds a "save text" command to the AHK script that will be executed if the param is selected

scriptParamScroll(String, FileWriter, BufferedReader, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that move a scrollbar according to the param selection

scriptParamUserInput(String, FileWriter, BufferedReader, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that insert text into an "edit box" according to the param selection

scriptRun(String, FileWriter, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds all initial info to AHK script

scriptSaveText(String, FileWriter, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that saves text to a file based on the definitions in the input file

scriptScrollbar(String, FileWriter, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that move a scrollbar based on the definitions in the input file

scriptSelect(String, FileWriter, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script commands that check/uncheck a checkbox based on the definitions in the input file

scripttypes - Static variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 
scriptWait(String, FileWriter, int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds AHK commands that create a "wait" in the AHK script execution

scriptWin(String, FileWriter, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds to the AHK script a call to Win() which will (in runtime) wait for a window and show it

scriptWrite(String, FileWriter, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

adds text to the AHK script file

sendData(SoftwareServerAuxiliary.FileData) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Send file data to the software reuse server.

sendData(SoftwareServerAuxiliary.FileData) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Send file data to the software reuse server.

sendDataLater(SoftwareServerAuxiliary.FileData) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Asynchronously send file data to the server.

sendDataLater(SoftwareServerAuxiliary.FileData) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Asynchronously send file data to the server.

serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Data
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Subtask
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Data
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation
 
serialVersionUID - Static variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Subtask
 
serveConnection(int, Socket) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Process requests from the given connection.

serveConnection(int, Socket) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotServer

Process requests from the given connection.

serveConnection(int, Socket) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Process requests from the given connection.

servers - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.RemoteTaskInfo
 
Servers() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to list the software servers connected to polyglot server

Servers() - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
servers - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.RemoteTaskInfo
 
set(int, String) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Set a line of the script.

set(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG.UniqueString

Set the string.

setActiveEdges(Boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Set all edges to the given value.

setActiveEdges(TreeSet<String>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Set only listed edges to active.

setAlias(String) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Set the script alias.

setApplicationFlexibility(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Set the flexibility when choosing an application where 0=none (default), 1=allow parallel applications with
 the same name (different software servers), 2=allow all parallel applications.

setApplicationFlexibility(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Set the flexibility when choosing an application where 0=none (default), 1=allow parallel applications with
 the same name (different software reuse servers), 2=allow all parallel applications.

setAuthentication(String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Set the username and password to use when others communicate back to polyglot.

setCachePath(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Set the cache path

setCapturing(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS

Enable/disable screen shot capturing.

setDataPath(String) - Method in class edu.illinois.ncsa.isda.softwareserver.ScriptDebugger

Set the data path.

setDefaultAuthentication(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Set default authentication for HTTP requests.

setEdgeColor(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Set the edge color.

setEdgeWeight(Double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Sets the weight for all edges.

setEdgeWeight(String, String, String, Double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Set the weight of the given edge.

setEnableWeightedPaths(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Enable/disable the use of weighted paths when searching for conversions in the graph.

setEndOfRequest(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation

Set the end time of the request along with whether or not the conversion was successful or not

setJobCounter(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Set job counter based on a previous execution.

setMaxTaskTime(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Set the maximum time to wait for a task to complete (used with the Software Server REST interface).

setMinimumWeight(double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Sets the minimum weight a path can be to be considered path of the graph.

setOperation(String) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Set the operation the script will perform.

setOutputPanelHeight(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Set the height of the output panel.

setPopupMenu() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotPanel

Set the popup menu.

setPurgeJobs(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet

Set whether or not previous jobs should be purged or not.

setReturnURL(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet

Set whether or not to return a URL as the result (as opposed to the file itself).

setServer(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

Set the VNC server to connect to.

setSessionPrefix(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Set session prefix

setSidePaneWidth(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Set the width of the auxiliary side pane.

setSize(int, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Set the size of this panel.

setSoftwareServerRESTInterface(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet

Set whether or not to access Software Servers via their REST interface.

setSoftwareServerRESTPort(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Set the software server port.

setValidApplications(Set<String>) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Sets the list of applications that should be considered when finding a
 conversion path.

setVertexColor(int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Set the vertex color.

setViewEdgeQuality(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

Enable/disable the display of edge quality information in the graph.

setWeight(double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
setWeight(String, String, String, double) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2

Sets the weight of all conversions matching the triple [input, output,
 application].

showEdge(int, int) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph
 
showEdgeQuality(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Panel
 
showParameters(Conversion2) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Panel
 
size() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Get the number of tasks in the list.

size - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.FileInformation
 
size() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Get the number of software server clients being used.

size() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.PolyglotStewardThreaded

Get the number of software reuse clients being used.

size() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Get the number of tasks in the list.

software - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.ScriptHeader
 
Software() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Used to list the applications available in polyglot server

Software() - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
SoftwareMonkey_DS - Class in edu.illinois.ncsa.isda.softwareserver

A program for creating monkey scripts (monkey see, monkey do)

SoftwareMonkey_DS(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_DS

Class constructor.

SoftwareMonkey_F - Class in edu.illinois.ncsa.isda.softwareserver.experimental

A program for creating monkey scripts (monkey see, monkey do)
 TODO: This is work in progress, must make this approach workable!

SoftwareMonkey_F() - Constructor for class edu.illinois.ncsa.isda.softwareserver.experimental.SoftwareMonkey_F
 
SoftwareMonkey_VNC - Class in edu.illinois.ncsa.isda.softwareserver

A program for creating monkey scripts (monkey see, monkey do)

SoftwareMonkey_VNC(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareMonkey_VNC

Class constructor.

softwareParameters - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.ScriptHeader
 
SoftwareServer - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

An Imposed Code Reuse server.

SoftwareServer() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Class constructor.

SoftwareServer(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Class constructor.

SoftwareServer - Class in edu.illinois.ncsa.isda.softwareserver

A Software Server.

SoftwareServer() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Class constructor.

SoftwareServer(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Class constructor.

SoftwareServerAuxiliary - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

Helper classes for the Software Server package.

SoftwareServerAuxiliary() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary
 
SoftwareServerAuxiliary - Class in edu.illinois.ncsa.isda.softwareserver

Helper classes for the Software Server package.

SoftwareServerAuxiliary() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary
 
SoftwareServerAuxiliary.Application - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

A structure to store information about applications.

SoftwareServerAuxiliary.Application(String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application

Class constructor.

SoftwareServerAuxiliary.Application(SoftwareServerAuxiliary.Script) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application

Class constructor.

SoftwareServerAuxiliary.Application - Class in edu.illinois.ncsa.isda.softwareserver

A structure to store information about applications.

SoftwareServerAuxiliary.Application(String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application

Class constructor.

SoftwareServerAuxiliary.Application(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application

Class constructor.

SoftwareServerAuxiliary.Application(SoftwareServerAuxiliary.Script) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application

Class constructor.

SoftwareServerAuxiliary.CachedFileData - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

A pointer to a file stored in an externally defined cache directory.

SoftwareServerAuxiliary.CachedFileData() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData
 
SoftwareServerAuxiliary.CachedFileData(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(SoftwareServerAuxiliary.FileData, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(SoftwareServerAuxiliary.FileData, int, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(SoftwareServerAuxiliary.CachedFileData, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Class copy constructor.

SoftwareServerAuxiliary.CachedFileData - Class in edu.illinois.ncsa.isda.softwareserver

A pointer to a file stored in an externally defined cache directory.

SoftwareServerAuxiliary.CachedFileData() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData
 
SoftwareServerAuxiliary.CachedFileData(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(String, String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(String, String, boolean) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(SoftwareServerAuxiliary.FileData, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(SoftwareServerAuxiliary.FileData, int, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Class constructor.

SoftwareServerAuxiliary.CachedFileData(SoftwareServerAuxiliary.CachedFileData, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Class copy constructor.

SoftwareServerAuxiliary.Data - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

An container for some kind of data.

SoftwareServerAuxiliary.Data() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Data
 
SoftwareServerAuxiliary.Data - Class in edu.illinois.ncsa.isda.softwareserver

An container for some kind of data.

SoftwareServerAuxiliary.Data() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Data
 
SoftwareServerAuxiliary.FileData - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

Data representing a file with a path, a name, and a format (possibly also buffered in memory).

SoftwareServerAuxiliary.FileData() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData
 
SoftwareServerAuxiliary.FileData(String, boolean) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Class constructor.

SoftwareServerAuxiliary.FileData - Class in edu.illinois.ncsa.isda.softwareserver

Data representing a file with a path, a name, and a format (possibly also buffered in memory).

SoftwareServerAuxiliary.FileData() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData
 
SoftwareServerAuxiliary.FileData(String, boolean) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Class constructor.

SoftwareServerAuxiliary.FormatParameters - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

holds parameter data for a specific format conversion

SoftwareServerAuxiliary.FormatParameters() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FormatParameters
 
SoftwareServerAuxiliary.Operation - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

A structure representing an operation an application supports (think of mathematical functions).

SoftwareServerAuxiliary.Operation(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation

Class constructor.

SoftwareServerAuxiliary.Operation(SoftwareServerAuxiliary.Script) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation

Class constructor.

SoftwareServerAuxiliary.Operation - Class in edu.illinois.ncsa.isda.softwareserver

A structure representing an operation an application supports (think of mathematical functions).

SoftwareServerAuxiliary.Operation(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation

Class constructor.

SoftwareServerAuxiliary.Operation(SoftwareServerAuxiliary.Script) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation

Class constructor.

SoftwareServerAuxiliary.OperationParameters - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

holds parameter data for a specific operation to be performed

SoftwareServerAuxiliary.OperationParameters(String, List<SoftwareServerAuxiliary.SingleParameter>) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.OperationParameters
 
SoftwareServerAuxiliary.OperationParameters() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.OperationParameters
 
SoftwareServerAuxiliary.Parameters - Class in edu.illinois.ncsa.isda.softwareserver.parametrized
 
SoftwareServerAuxiliary.Parameters(SoftwareServerAuxiliary.FormatParameters, SoftwareServerAuxiliary.FormatParameters, SoftwareServerAuxiliary.SoftwareParameters) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Parameters
 
SoftwareServerAuxiliary.RemoteTaskInfo - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

A structure storing information about a task on a remote server.

SoftwareServerAuxiliary.RemoteTaskInfo(String, String, String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.RemoteTaskInfo

Class constructor.

SoftwareServerAuxiliary.RemoteTaskInfo - Class in edu.illinois.ncsa.isda.softwareserver

A structure storing information about a task on a remote server.

SoftwareServerAuxiliary.RemoteTaskInfo(String, String, String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.RemoteTaskInfo

Class constructor.

SoftwareServerAuxiliary.Script - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

A structure representing a wrapper script.

SoftwareServerAuxiliary.Script(String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script

Class constructor.

SoftwareServerAuxiliary.Script - Class in edu.illinois.ncsa.isda.softwareserver

A structure representing a wrapper script.

SoftwareServerAuxiliary.Script() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Class constructor.

SoftwareServerAuxiliary.Script(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Class constructor.

SoftwareServerAuxiliary.Script(String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script

Class constructor.

SoftwareServerAuxiliary.ScriptHeader - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

a wrapper for the script header

SoftwareServerAuxiliary.ScriptHeader() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.ScriptHeader
 
SoftwareServerAuxiliary.ScriptType - Class in edu.illinois.ncsa.isda.softwareserver

A structure to represent various script types.

SoftwareServerAuxiliary.ScriptType(String, String, String, String, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptType

Class constructor.

SoftwareServerAuxiliary.ScriptType(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptType

Class constructor.

SoftwareServerAuxiliary.ScriptTypes - Class in edu.illinois.ncsa.isda.softwareserver

A structure to represent various script types.

SoftwareServerAuxiliary.ScriptTypes() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptTypes

Class constructor.

SoftwareServerAuxiliary.ScriptTypes(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.ScriptTypes

Class constructor.

SoftwareServerAuxiliary.SingleParameter - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

a single operation parameter

SoftwareServerAuxiliary.SingleParameter() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
SoftwareServerAuxiliary.SoftwareParameters - Class in edu.illinois.ncsa.isda.softwareserver.parametrized
 
SoftwareServerAuxiliary.SoftwareParameters() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SoftwareParameters
 
SoftwareServerAuxiliary.Subtask - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

A structure representing a a sub-task consisting of an application, operation, input, and output.

SoftwareServerAuxiliary.Subtask(int, int, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Subtask

Class constructor.

SoftwareServerAuxiliary.Subtask - Class in edu.illinois.ncsa.isda.softwareserver

A structure representing a a sub-task consisting of an application, operation, input, and output.

SoftwareServerAuxiliary.Subtask(int, int, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Subtask

Class constructor.

SoftwareServerAuxiliary.Task - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

A task consisting of a sequence of application and operations on data.

SoftwareServerAuxiliary.Task(SoftwareServerClient) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Class constructor.

SoftwareServerAuxiliary.Task(SoftwareServerClient, String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Class constructor, create a sequence of tasks that will allow an application to go from the input to the output format.

SoftwareServerAuxiliary.Task(Vector<SoftwareServerAuxiliary.Application>) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task

Class constructor.

SoftwareServerAuxiliary.Task - Class in edu.illinois.ncsa.isda.softwareserver

A task consisting of a sequence of application and operations on data.

SoftwareServerAuxiliary.Task(SoftwareServerClient) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Class constructor.

SoftwareServerAuxiliary.Task(SoftwareServerClient, String, SoftwareServerAuxiliary.Data, SoftwareServerAuxiliary.Data) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Class constructor, create a sequence of tasks that will allow an application to go from the input to the output format.

SoftwareServerAuxiliary.Task(Vector<SoftwareServerAuxiliary.Application>) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task

Class constructor.

SoftwareServerAuxiliary.TaskInfo - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

A structure storing a task name, its inputs, and its outputs.

SoftwareServerAuxiliary.TaskInfo(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.TaskInfo

Class constructor.

SoftwareServerAuxiliary.TaskInfo(SoftwareServerAuxiliary.Application, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.TaskInfo

Class constructor.

SoftwareServerAuxiliary.TaskInfo - Class in edu.illinois.ncsa.isda.softwareserver

A structure storing a task name, its inputs, and its outputs.

SoftwareServerAuxiliary.TaskInfo(String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.TaskInfo

Class constructor.

SoftwareServerAuxiliary.TaskInfo(SoftwareServerAuxiliary.Application, String) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.TaskInfo

Class constructor.

SoftwareServerClient - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

An Imposed Code Reuse client interface.

SoftwareServerClient(String, int) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Class constructor.

SoftwareServerClient(SoftwareServerClient) - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Class copy constructor.

SoftwareServerClient - Class in edu.illinois.ncsa.isda.softwareserver

A Software Server client interface.

SoftwareServerClient(String, int) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Class constructor.

SoftwareServerClient(SoftwareServerClient) - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Class copy constructor.

SoftwareServerReslet - Class in edu.illinois.ncsa.isda.softwareserver.parametrized

A restful interface for a software reuse server.

SoftwareServerReslet() - Constructor for class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerReslet
 
SoftwareServerRESTEasy - Class in edu.illinois.ncsa.isda.softwareserver

A restful interface for a software server.

SoftwareServerRESTEasy() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Class constructor.

SoftwareServerRESTEasyInterface - Interface in edu.illinois.ncsa.isda.softwareserver
 
SoftwareServerRestlet - Class in edu.illinois.ncsa.isda.softwareserver

A restful interface for a software server.

SoftwareServerRestlet() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet
 
SoftwareServerRESTUtilities - Class in edu.illinois.ncsa.isda.softwareserver

Software Server REST interface utility functions.

SoftwareServerRESTUtilities() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTUtilities
 
SoftwareServerUtility - Class in edu.illinois.ncsa.isda.softwareserver

Utility functions.

SoftwareServerUtility() - Constructor for class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility
 
softwareWriteAllScripts(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder
 
ssc - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application
 
start() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotStewardAMQ

Start the main thread (as a separate function so can be called externally, e.g.

start_time - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation
 
startFocusThief(int) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Start up an iconified JFrame for the sole purpose of stealing screen focus when needed.

startScript(String, File) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

wrap call to scriptRun

stealFocus(int) - Method in class edu.illinois.ncsa.isda.softwareserver.MonkeyScript

Steal window focus as best as possible.

stop() - Method in class edu.illinois.ncsa.isda.softwareserver.DistributedSoftwareServerRestlet

Stop the REST interface.

stop() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Stop the REST interface.

stop() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRestlet

Stop the REST interface.

stop() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotServer

Stop the Polyglot server.

stop() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Stop the Software Server.

stop() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to stop the servlet server

stop() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRestlet

Stop the REST interface and underlying Software Server.

success - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation
 
supportedInput(String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application

Determine if the given extension is a supported input for some operation

swparameters - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation
 
swparameters - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 




T

task - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.RemoteTaskInfo
 
task - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.RemoteTaskInfo
 
taskPost(MultipartFormDataInput, String, String, UriInfo, HttpServletRequest, String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy

Process a file submitted to Polyglot and return a link to the produced file

taskPost(MultipartFormDataInput, String, String, UriInfo, HttpServletRequest, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasyInterface
 
taskPost(MultipartFormDataInput, String, String, UriInfo, String, String, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Process a file submitted to the Software Server and return a link to the produced file

taskPost(MultipartFormDataInput, String, String, UriInfo, String, String, String) - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
tasks() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Used to know the number of task processed since the server starts

tasks() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
text - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Point2D
 
TimedProcess - Class in edu.illinois.ncsa.isda.softwareserver

A process with a time limit.

TimedProcess(Process) - Constructor for class edu.illinois.ncsa.isda.softwareserver.TimedProcess

Class constructor.

TimedProcess(Process, boolean, boolean) - Constructor for class edu.illinois.ncsa.isda.softwareserver.TimedProcess

Class constructor.

timings(int, int, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Compare time of various algorithms to find a shortest path in random graph.

timings(int, int, int) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2
 
tjws - Static variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTEasy
 
tjws - Static variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy
 
toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Application

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Data

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FormatParameters
 
toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Operation

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.OperationParameters
 
toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.RemoteTaskInfo

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
toString(int) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter

display parameters selected (for debug purposes)

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Task
 
toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.TaskInfo

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Return a string representation of this object.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG.UniqueString

Return the string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.FileInformation

Convert this class to a string.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.RequestInformation

Return a string representation of the Polyglot request information.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.SoftwareServerApplication

Return a string representation.

toString(Collection<String>) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTUtilities

Convert a Collection of strings to a line separated list of strings.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Application

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Data

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Operation

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.RemoteTaskInfo

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Task
 
toString() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.TaskInfo

Get a string representation of this instance.

toString() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Return a string representation of this object.

toString_old(int) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter

display parameters selected (for debug purposes)

transform(V) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel_JUNG.ToAbbreviatedStringLabeller

Transform a vertex to a string.

transformEdgeWeights(String) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraph

Transform edge weights according to the given expression.

truncateFileName(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTUtilities

Truncate filename to a reasonable length.

truncateFileName(int, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTUtilities

Truncate filename from the leftmost filename to a reasonable length, 
 so caller can put length of prefix (maximum FILENAME_PREFIX_RESERVED_LENGTH) before the truncated filename and DOT_LOG_EXTENSION_LENGTH length
 as a new extension.

truncateURLFileName(String) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTUtilities

truncate URL filename to a reasonable length.

type - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
type - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 
types - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.Script
 
types - Variable in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.Script
 




U

uncache(int, String) - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.CachedFileData

Retrieve the file data from the cache.

uncache(int, String) - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.CachedFileData

Retrieve the file data from the cache.

UNKNOWN_WEIGHT - Static variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.Conversion2
 
unload() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.FileData

Clear stored data.

unload() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerAuxiliary.FileData

Clear stored data.

unzip(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Unzip a zip file into the given path.

updateMongo(DB, Polyglot) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTUtilities

Push logged information to mongo.

updateMongo(DB, PolyglotAuxiliary.RequestInformation) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotRESTUtilities

Push request information to mongo.

updateOutputFormats() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotWebInterface

Update and write out available output formats.

updateWorkflow(JsonObject) - Static method in class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities

Calls the DataWolf REST endpoint to update the workflow

uploadFile(String, File) - Static method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.VersusServiceCompare
 
useWeights(boolean) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.IOGraph2Panel
 




V

value - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.SingleParameter
 
valueChanged(TreeSelectionEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphPanel

The tree selection listener used to handle selections in the side tree.

valueChanged(TreeSelectionEvent) - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.IOGraphWeightsTool

Handle selection events from the side JTree.

version - Variable in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerAuxiliary.ScriptHeader
 
VersusCompare - Class in edu.illinois.ncsa.isda.softwareserver.polyglot

A small program to compare two files using the Versus library.

VersusCompare() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.VersusCompare
 
VersusServiceCompare - Class in edu.illinois.ncsa.isda.softwareserver.polyglot.weighted
 
VersusServiceCompare() - Constructor for class edu.illinois.ncsa.isda.softwareserver.polyglot.weighted.VersusServiceCompare
 




W

waitFor(int) - Method in class edu.illinois.ncsa.isda.softwareserver.TimedProcess

Wait a specified number of milli-seconds for a process to complete.

waitOnPending() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServerClient

Wait for all pending asynchronous calls to complete.

waitOnPending() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.Polyglot

Wait for all pending asynchronous calls to complete.

waitOnPending() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerClient

Wait for all pending asynchronous calls to complete.

waitUntilRunning() - Method in class edu.illinois.ncsa.isda.softwareserver.parametrized.SoftwareServer

Wait until the servers main thread is running.

waitUntilRunning() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Wait until the servers main thread is running.

waitUntilStopped() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotServer

Wait until the servers main thread stops.

waitUntilStopped() - Method in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotSteward

Wait until the steward's threads have stopped.

waitUntilStopped() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServer

Wait until the servers main thread stops.

WelcomeToSoftwareServer() - Method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasy

Returns SoftwareServer greetings

WelcomeToSoftwareServer() - Method in interface edu.illinois.ncsa.isda.softwareserver.SoftwareServerRESTEasyInterface
 
WorkflowUtilities - Class in edu.illinois.ncsa.isda.softwareserver.datawolf

DataWolf REST interface utility methods

WorkflowUtilities() - Constructor for class edu.illinois.ncsa.isda.softwareserver.datawolf.WorkflowUtilities
 
writeScript(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.AHKScriptBuilder

loops over all input files to build the script - it assumes that the file #0 will have the "run" command





X

x - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Point2D
 




Y

y - Variable in class edu.illinois.ncsa.isda.softwareserver.polyglot.PolyglotAuxiliary.Point2D
 




Z

zip(String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Zip a file or directory.

zip(String, Vector<String>) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Zip a given set of files.

zip(ZipOutputStream, String, String) - Static method in class edu.illinois.ncsa.isda.softwareserver.SoftwareServerUtility

Add a file to the given zip file output stream.


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