Build #1

Plan branch:

Build: #1 was successful

Job: default was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 2,723 lines of output.   The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.

15-Apr-2016 12:23:45 2016-04-15 12:23:45,891 - [DEBUG  ] - application - techmd={}
15-Apr-2016 12:23:45 2016-04-15 12:23:45,892 - [DEBUG  ] - application - xmlmd={ }
15-Apr-2016 12:23:45 2016-04-15 12:23:45,893 - [INFO   ] - application - Adding file to dataset completed
15-Apr-2016 12:23:45 2016-04-15 12:23:45,894 - [DEBUG  ] - application - tagStr=[]
15-Apr-2016 12:23:45 2016-04-15 12:23:45,894 - [DEBUG  ] - application - commentStr=[]
15-Apr-2016 12:23:45 2016-04-15 12:23:45,894 - [DEBUG  ] - application - usrmd={}
15-Apr-2016 12:23:45 2016-04-15 12:23:45,895 - [DEBUG  ] - application - techmd={}
15-Apr-2016 12:23:45 2016-04-15 12:23:45,895 - [DEBUG  ] - application - xmlmd={ }
15-Apr-2016 12:23:45 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 1 Creation
15-Apr-2016 12:23:45 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
15-Apr-2016 12:23:45 [info]   + Status=200
15-Apr-2016 12:23:45 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:45 [info]   + contentAsString{"id":"571123a160b2a589698e9e3d"}
15-Apr-2016 12:23:45 2016-04-15 12:23:45,900 - [DEBUG  ] - application - File1 is File:True
15-Apr-2016 12:23:46 2016-04-15 12:23:46,043 - [DEBUG  ] - application - Uploading file dataset-image-1.zip
15-Apr-2016 12:23:46 2016-04-15 12:23:46,105 - [DEBUG  ] - application - --- API Creating new dataset ----
15-Apr-2016 12:23:46 2016-04-15 12:23:46,123 - [DEBUG  ] - application - tagStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,123 - [DEBUG  ] - application - commentStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,124 - [DEBUG  ] - application - usrmd={}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,124 - [DEBUG  ] - application - techmd={}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,125 - [DEBUG  ] - application - xmlmd={ }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,126 - [INFO   ] - application - Adding file to dataset completed
15-Apr-2016 12:23:46 2016-04-15 12:23:46,127 - [DEBUG  ] - application - tagStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,127 - [DEBUG  ] - application - commentStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,127 - [DEBUG  ] - application - usrmd={}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,128 - [DEBUG  ] - application - techmd={}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,128 - [DEBUG  ] - application - xmlmd={ }
15-Apr-2016 12:23:46 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 2 Creation
15-Apr-2016 12:23:46 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:46 [info]   + contentAsString{"id":"571123a260b2a589698e9e54"}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,151 - [DEBUG  ] - application - Adding dataset 571123a160b2a589698e9e3d to collection 571123a160b2a589698e9e27
15-Apr-2016 12:23:46 2016-04-15 12:23:46,153 - [DEBUG  ] - application - tagStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,154 - [DEBUG  ] - application - commentStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,154 - [DEBUG  ] - application - retmd: { }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,154 - [DEBUG  ] - application - usrmd={ }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,155 - [DEBUG  ] - application - retmd: { }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,155 - [DEBUG  ] - application - techmd={ }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,155 - [DEBUG  ] - application - retmd: [ ]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,155 - [DEBUG  ] - application - xmlmd=[ ]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,159 - [DEBUG  ] - application - Adding dataset to collection completed
15-Apr-2016 12:23:46 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 1
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:46 [info]   + contentAsString{"datasetsInCollection":1}
15-Apr-2016 12:23:46 [info] - must respond to the listInCollection(coll_id: UUID) function routed by GET /api/collections/:coll_id/getDatasets
15-Apr-2016 12:23:46 [info]   + Status_Get=200
15-Apr-2016 12:23:46 [info]   + contentType_Get=Some(application/json)
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + [ {
15-Apr-2016 12:23:46 [info]   "id" : "571123a160b2a589698e9e3d",
15-Apr-2016 12:23:46 [info]   "name" : "Dataset 1 API Test Creation",
15-Apr-2016 12:23:46 [info]   "description" : "Part 1 of Dataset API Test Suite",
15-Apr-2016 12:23:46 [info]   "created" : "Fri Apr 15 12:23:45 CDT 2016",
15-Apr-2016 12:23:46 [info]   "thumbnail" : "None",
15-Apr-2016 12:23:46 [info]   "authorId" : "000000000000000000000000"
15-Apr-2016 12:23:46 [info] } ]
15-Apr-2016 12:23:46 [info] - must respond to the listOutsideCollection(coll_id: UUID) function routed by GET /api/datasets/listOutsideCollection/:coll_id
15-Apr-2016 12:23:46 [info]   + Status_Get=200
15-Apr-2016 12:23:46 [info]   + contentType_Get=Some(application/json)
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + [ {
15-Apr-2016 12:23:46 [info]   "id" : "571123a260b2a589698e9e54",
15-Apr-2016 12:23:46 [info]   "name" : "Dataset 2 API Test Creation",
15-Apr-2016 12:23:46 [info]   "description" : "Part 2 of Dataset API Test Suite",
15-Apr-2016 12:23:46 [info]   "created" : "Fri Apr 15 12:23:46 CDT 2016",
15-Apr-2016 12:23:46 [info]   "thumbnail" : "None",
15-Apr-2016 12:23:46 [info]   "authorId" : "000000000000000000000000"
15-Apr-2016 12:23:46 [info] }, {
15-Apr-2016 12:23:46 [info]   "id" : "571123a160b2a589698e9e3d",
15-Apr-2016 12:23:46 [info]   "name" : "Dataset 1 API Test Creation",
15-Apr-2016 12:23:46 [info]   "description" : "Part 1 of Dataset API Test Suite",
15-Apr-2016 12:23:46 [info]   "created" : "Fri Apr 15 12:23:45 CDT 2016",
15-Apr-2016 12:23:46 [info]   "thumbnail" : "None",
15-Apr-2016 12:23:46 [info]   "authorId" : "000000000000000000000000"
15-Apr-2016 12:23:46 [info] } ]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,193 - [DEBUG  ] - application - Adding dataset 571123a260b2a589698e9e54 to collection 571123a160b2a589698e9e27
15-Apr-2016 12:23:46 2016-04-15 12:23:46,195 - [DEBUG  ] - application - tagStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,196 - [DEBUG  ] - application - commentStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,196 - [DEBUG  ] - application - retmd: { }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,196 - [DEBUG  ] - application - usrmd={ }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,196 - [DEBUG  ] - application - retmd: { }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,196 - [DEBUG  ] - application - techmd={ }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,197 - [DEBUG  ] - application - retmd: [ ]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,197 - [DEBUG  ] - application - xmlmd=[ ]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,202 - [DEBUG  ] - application - Adding dataset to collection completed
15-Apr-2016 12:23:46 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 2
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:46 [info]   + contentAsString{"datasetsInCollection":2}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,213 - [DEBUG  ] - application - Removing dataset 571123a260b2a589698e9e54 from collection 571123a160b2a589698e9e27
15-Apr-2016 12:23:46 2016-04-15 12:23:46,217 - [DEBUG  ] - application - tagStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,218 - [DEBUG  ] - application - commentStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,218 - [DEBUG  ] - application - retmd: { }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,218 - [DEBUG  ] - application - usrmd={ }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,219 - [DEBUG  ] - application - retmd: { }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,219 - [DEBUG  ] - application - techmd={ }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,219 - [DEBUG  ] - application - retmd: [ ]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,219 - [DEBUG  ] - application - xmlmd=[ ]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,223 - [INFO   ] - application - Removing dataset from collection completed
15-Apr-2016 12:23:46 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNotFound) function routed by DELETE /api/collections/:coll_id/datasets/:ds_id for dataset 2
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:46 [info]   + contentAsString{"status":"success"}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,235 - [DEBUG  ] - application - Removing dataset 571123a160b2a589698e9e3d from collection 571123a160b2a589698e9e27
15-Apr-2016 12:23:46 2016-04-15 12:23:46,237 - [DEBUG  ] - application - tagStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,238 - [DEBUG  ] - application - commentStr=[]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,238 - [DEBUG  ] - application - retmd: { }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,238 - [DEBUG  ] - application - usrmd={ }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,238 - [DEBUG  ] - application - retmd: { }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,238 - [DEBUG  ] - application - techmd={ }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,240 - [DEBUG  ] - application - retmd: [ ]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,240 - [DEBUG  ] - application - xmlmd=[ ]
15-Apr-2016 12:23:46 2016-04-15 12:23:46,244 - [INFO   ] - application - Removing dataset from collection completed
15-Apr-2016 12:23:46 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNoteFound) function routed by POST /api/collections/:coll_id/datasets/:ds_id/:ignoreNotFound for dataset 2
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:46 [info]   + contentAsString{"status":"success"}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,255 - [DEBUG  ] - application - userdfSPARQLStore not enabled
15-Apr-2016 12:23:46 2016-04-15 12:23:46,261 - [DEBUG  ] - application - Removing XML metadata belonging to file 571123a160b2a589698e9e39 from dataset 571123a160b2a589698e9e3d.
15-Apr-2016 12:23:46 2016-04-15 12:23:46,265 - [ERROR  ] - application - File not found: 571123a160b2a589698e9e39
15-Apr-2016 12:23:46 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 1
15-Apr-2016 12:23:46 [info]   + Status_Get=200
15-Apr-2016 12:23:46 [info]   + contentType_Get=Some(application/json)
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + {
15-Apr-2016 12:23:46 [info]   "status" : "success"
15-Apr-2016 12:23:46 [info] }
15-Apr-2016 12:23:46 2016-04-15 12:23:46,274 - [DEBUG  ] - application - userdfSPARQLStore not enabled
15-Apr-2016 12:23:46 2016-04-15 12:23:46,278 - [DEBUG  ] - application - Removing XML metadata belonging to file 571123a260b2a589698e9e50 from dataset 571123a260b2a589698e9e54.
15-Apr-2016 12:23:46 2016-04-15 12:23:46,285 - [ERROR  ] - application - File not found: 571123a260b2a589698e9e50
15-Apr-2016 12:23:46 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 2
15-Apr-2016 12:23:46 [info]   + Status_Get=200
15-Apr-2016 12:23:46 [info]   + contentType_Get=Some(application/json)
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + {
15-Apr-2016 12:23:46 [info]   "status" : "success"
15-Apr-2016 12:23:46 [info] }
15-Apr-2016 12:23:46 [info] - must respond to the listCollections() function routed by GET /api/collections
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:46 [info]   + content[]
15-Apr-2016 12:23:46 [info] - must respond to the listCollections() function routed by GET /api/collections/list
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:46 [info]   + content[]
15-Apr-2016 12:23:46 [info] - must respond to the removeCollection(coll_id:UUID) function routed by POST /api/collections/:coll_id/remove 
15-Apr-2016 12:23:46 [info]   + Status_Get=200
15-Apr-2016 12:23:46 [info]   + contentType_Get=Some(application/json)
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + {
15-Apr-2016 12:23:46 [info]   "status" : "success"
15-Apr-2016 12:23:46 [info] }
15-Apr-2016 12:23:46 [info] - must respond to the removeCollection(coll_id:UUID) function routed by DELETE /api/collections/:id 
15-Apr-2016 12:23:46 [info]   + Status_Get=200
15-Apr-2016 12:23:46 [info]   + contentType_Get=Some(application/json)
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + {
15-Apr-2016 12:23:46 [info]   "status" : "success"
15-Apr-2016 12:23:46 [info] }
15-Apr-2016 12:23:46 [info] PreviewsAPIAppSpec:
15-Apr-2016 12:23:46 [info] The Previews API Spec
15-Apr-2016 12:23:46 2016-04-15 12:23:46,354 - [DEBUG  ] - application - File1 is File:True
15-Apr-2016 12:23:46 [info] - must provide a FakeApplication
15-Apr-2016 12:23:46 [info] - must make the FakeApplication available implicitly
15-Apr-2016 12:23:46 [info] - must start the FakeApplication
15-Apr-2016 12:23:46 [info] The Previews API Spec
15-Apr-2016 12:23:46 2016-04-15 12:23:46,399 - [DEBUG  ] - application - Uploading file morrowplots.jpg
15-Apr-2016 12:23:46 [info] - must respond to the Upload File
15-Apr-2016 12:23:46 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:46 [info]   + contentAsString{"id":"571123a260b2a589698e9e66"}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,429 - [DEBUG  ] - application - File1 is File:True
15-Apr-2016 12:23:46 2016-04-15 12:23:46,460 - [DEBUG  ] - application - ########Uploading Preview----morrowplots-preview.jpg
15-Apr-2016 12:23:46 2016-04-15 12:23:46,487 - [DEBUG  ] - application - ctp: Some(application/octet-stream)
15-Apr-2016 12:23:46 [info] - must respond to the upload() and download() function routed by POST/GET /api/previews
15-Apr-2016 12:23:46 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:46 [info]   + contentAsString{"id":"571123a260b2a589698e9e6b"}
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + {
15-Apr-2016 12:23:46 [info]   "id" : "571123a260b2a589698e9e6b"
15-Apr-2016 12:23:46 [info] }
15-Apr-2016 12:23:46 [info]   + id value 571123a260b2a589698e9e6b
15-Apr-2016 12:23:46 [info]   + Status=200
15-Apr-2016 12:23:46 [info]   + contentType=Some(image/jpeg)
15-Apr-2016 12:23:46 [info]   + contentAsString2000
15-Apr-2016 12:23:46 [info] ������������JFIFHH���������ExifMM*n
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15-Apr-2016 12:23:46 [info]  ���*2010:03:05 08:51:142010:03:05 08:51:14R980100 N���W���&(ydX
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15-Apr-2016 12:23:46 [info] 
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15-Apr-2016 12:23:46
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15-Apr-2016 12:23:46 [info] ���������}!1AQa"q2���������#B������R������$3br���        
15-Apr-2016 12:23:46 [info] %&'()*456789:CDEFGHIJSTUVWXYZcdefghijstuvwxyz���������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������        
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15-Apr-2016 12:23:46 [info] $4���%���&'()*56789:CDEFGHIJSTUVWXYZcdefghijstuvwxyz������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������ ?������������D^������g���8E���N���P!���������}������jx�����������S���>��p���zS>��������lF"������������*������>���������0���������<C@
15-Apr-2016 12:23:46 [info] !������}���\c���^��/jW ������U+������D^��� �����eX���C���O���S������}������j���b���8C���K������T���������}���|���j\���`���<���j9������*�����������������*y���9D���h������������6������������6r���Ol]�������`������        ���P:f������&1���������hI���������Z������[`��I���+6p3���
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15-Apr-2016 12:23:46 [info] Cms������k�����,*���������c���:ct���_��������������V���d������d5���u;������I���J��������������Z���������Uj���[O ������������\���XHN������2������=���wV���������������������������+?i���t&49���������������������������<_~!{���������e������ ���_\7.]������B���nVb���c���������������E��� ���e���������������H-���nUCgqt���y������A���`���������#���(������h������Uy������y���������Gs�����.IX������������J��������������������wo���<o���"���������$|s���m������$r���{������������"���07���e$���~���}������"tMV���~3��2���������
15-Apr-2016 12:23:46 [info] u�����������1$���3��������[kmp������]������O9���p=������V������������&�����������������~������qU���j
15-Apr-2016 12:23:46 [���������j���N������_���y,_���L��� ���������|M���-Q���b];��@�����T`<���G������RT���g���������N/���6���V���������k���u`���E���������������&�����������������Qu8V������ rz��������^������x���%���o-������0������q���������������������_{���3O���O������#������������f|+���NX���������������B5���F���%������������F���K���i&X������l���z���I������\|���4x���W������t���-�����������y1��� ln������+���������XIw������o���7`���������T~'���Y������n������\���=���A9��������d���V���@���I���&r�����������������Ii���������h"r������ ���pFX���������������J~������������������I$���������q���x������Q���u ���:.8���0q���1]���x���5E���q������������������<���M��������weX���<zg9�����������+���1uw��������������������������fS������������Z���������+\���2001���������������O������^���������w_���r���&��� [��        ���0_��������������        ������������������������������1K�����������'���������<N���\������������]��������:~���k`4��������(���z������+���H���Cp���4���������
15-Apr-2016 12:23:46 [info] ���$Fn���h��}������c������������������S{\���������/���~$xz/���cY����������������)�����z��������������_p:zQEg.������cJ;���[) 1T1������s���0j#[���v���m���a1R������t���<s���:c���z(�����������������^{������������>G�����������Ok}�����������������'���������(������K)��������������e������r������#���>���[���b������������������������W,���OC9h������
15-Apr-2016 12:23:46 [info] 0
15-Apr-2016 12:23:46 [info]
15-Apr-2016 12:23:46 [info] 
15-Apr-2016 12:23:46 2016-04-15 12:23:46,586 - [DEBUG  ] - application - File2 is File:True
15-Apr-2016 12:23:46 2016-04-15 12:23:46,597 - [DEBUG  ] - application - {"Image":"fid","extractor_id":"test-extractor"}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,598 - [DEBUG  ] - application - ListBuffer((Image,"fid"), (extractor_id,"test-extractor"))
15-Apr-2016 12:23:46 2016-04-15 12:23:46,601 - [DEBUG  ] - application - Updating previews.files 571123a260b2a589698e9e6b with Map(Image -> fid, extractor_id -> test-extractor)
15-Apr-2016 12:23:46 2016-04-15 12:23:46,614 - [DEBUG  ] - application - api.Files.attachPreview(): No "extractor_id" specified in request, set it to None.  request.body: {}
15-Apr-2016 12:23:46 2016-04-15 12:23:46,616 - [DEBUG  ] - application - attachToFile: extractorId is 'Some(Other)'.
15-Apr-2016 12:23:46 2016-04-15 12:23:46,617 - [DEBUG  ] - application - Updating previews.files 571123a260b2a589698e9e6b with Map()
15-Apr-2016 12:23:46 [info] - must respond to the uploadMetadata(id: UUID) and getMetadata(id: UUID) function routed by POST/GET /api/previews/:id/metadata
15-Apr-2016 12:23:46 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/test/data/previews/data-test-general.json
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + {
15-Apr-2016 12:23:46 [info]   "Image" : "fid",
15-Apr-2016 12:23:46 [info]   "extractor_id" : "test-extractor"
15-Apr-2016 12:23:46 [info] }
15-Apr-2016 12:23:46 [info]   + Status_Post=200
15-Apr-2016 12:23:46 [info]   + contentType_Post=Some(application/json)
15-Apr-2016 12:23:46 [info] - must respond to the attachPreview(file_id:UUID, preview:UUID) function routed by POST /api/files/:file_id/previews/:p_id 
15-Apr-2016 12:23:46 [info]   + Status_Post=200
15-Apr-2016 12:23:46 [info]   + contentType_Post=Some(application/json)
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + {
15-Apr-2016 12:23:46 [info]   "status" : "success"
15-Apr-2016 12:23:46 [info] }
15-Apr-2016 12:23:46 [info] - must respond to the filePreviewsList(id: UUID) function routed by GET /api/files/:file_id/listpreviews
15-Apr-2016 12:23:46 [info]   + Status_get=200
15-Apr-2016 12:23:46 [info]   + contentType_get=Some(application/json)
15-Apr-2016 12:23:46 [info]   + Pretty JSON format
15-Apr-2016 12:23:46 [info]   + [ {
15-Apr-2016 12:23:46 [info]   "id" : "571123a260b2a589698e9e6b",
15-Apr-2016 12:23:46 [info]   "filename" : "morrowplots-preview.jpg",
15-Apr-2016 12:23:46 [info]   "contentType" : "image/jpeg"
15-Apr-2016 12:23:46 [info] } ]
15-Apr-2016 12:23:47 [info] - must respond to the getPreviews(id: UUID) function routed by GET /api/files/:file_id/getPreviews
15-Apr-2016 12:23:47 [info]   + Status_Get=200
15-Apr-2016 12:23:47 [info]   + contentType_Get=Some(application/json)
15-Apr-2016 12:23:47 [info]   + Pretty JSON format
15-Apr-2016 12:23:47 [info]   + [ {
15-Apr-2016 12:23:47 [info]   "file_id" : "571123a260b2a589698e9e66",
15-Apr-2016 12:23:47 [info]   "previews" : [ {
15-Apr-2016 12:23:47 [info]     "pv_route" : "/api/previews/571123a260b2a589698e9e6b",
15-Apr-2016 12:23:47 [info]     "p_main" : "thumbnail-previewer.js",
15-Apr-2016 12:23:47 [info]     "pv_id" : "571123a260b2a589698e9e6b",
15-Apr-2016 12:23:47 [info]     "p_path" : "/assets/javascripts/previewers/thumbnail",
15-Apr-2016 12:23:47 [info]     "p_id" : "Thumbnail",
15-Apr-2016 12:23:47 [info]     "pv_length" : "9757",
15-Apr-2016 12:23:47 [info]     "pv_contenttype" : "image/jpeg"
15-Apr-2016 12:23:47 [info]   } ]
15-Apr-2016 12:23:47 [info] } ]
15-Apr-2016 12:23:47 [info] - must respond to the list() function routed by GET /api/previews
15-Apr-2016 12:23:47 [info]   + Status=200
15-Apr-2016 12:23:47 [info]   + contentType=Some(application/json)
15-Apr-2016 12:23:47 [info]   + content[{"id":"571123a260b2a589698e9e6b","filename":"morrowplots-preview.jpg","contentType":"image/jpeg"}]
15-Apr-2016 12:23:47 [info] - must respond to the removePreview(id:UUID) function routed by DELETE /api/previews/:id for morrowplots preview file
15-Apr-2016 12:23:47 [info]   + Status_Get=200
15-Apr-2016 12:23:47 [info]   + contentType_Get=Some(application/json)
15-Apr-2016 12:23:47 [info]   + Pretty JSON format
15-Apr-2016 12:23:47 [info]   + {
15-Apr-2016 12:23:47 [info]   "status" : "success"
15-Apr-2016 12:23:47 [info] }
15-Apr-2016 12:23:47 2016-04-15 12:23:47,147 - [DEBUG  ] - application - Deleting file from indexesmorrowplots.jpg
15-Apr-2016 12:23:47 2016-04-15 12:23:47,147 - [DEBUG  ] - application - Deleting file: morrowplots.jpg
15-Apr-2016 12:23:47 [info] - must respond to the removeFile(id:UUID) function routed by DELETE /api/files/:id 
15-Apr-2016 12:23:47 [info]   + Status_Get=200
15-Apr-2016 12:23:47 [info]   + contentType_Get=Some(application/json)
15-Apr-2016 12:23:47 [info]   + Pretty JSON format
15-Apr-2016 12:23:47 [info]   + {
15-Apr-2016 12:23:47 [info]   "status" : "success"
15-Apr-2016 12:23:47 [info] }
15-Apr-2016 12:23:47 [info] ApplicationSpec:
15-Apr-2016 12:23:47 [info] The Application API Spec
15-Apr-2016 12:23:47 [info] - must provide a FakeApplication
15-Apr-2016 12:23:47 [info] - must make the FakeApplication available implicitly
15-Apr-2016 12:23:47 [info] - must start the FakeApplication
15-Apr-2016 12:23:47 [info] - must send 404 on a bad request
15-Apr-2016 12:23:47 2016-04-15 12:23:47,194 - [DEBUG  ] - application - Getting value for display.name
15-Apr-2016 12:23:47 2016-04-15 12:23:47,196 - [DEBUG  ] - application - Getting value for welcome.message
15-Apr-2016 12:23:47 2016-04-15 12:23:47,203 - [DEBUG  ] - application - Getting value for theme
15-Apr-2016 12:23:47 2016-04-15 12:23:47,526 - [DEBUG  ] - application - Getting value for display.name
15-Apr-2016 12:23:47 2016-04-15 12:23:47,708 - [DEBUG  ] - application - [securesocial] bootstrap path = securesocial/bootstrap/css/bootstrap.min.css
15-Apr-2016 12:23:47 2016-04-15 12:23:47,709 - [DEBUG  ] - application - [securesocial] assets controller = controllers.ReverseAssets
15-Apr-2016 12:23:47 2016-04-15 12:23:47,710 - [DEBUG  ] - application - [securesocial] favicon path = securesocial/images/favicon.png
15-Apr-2016 12:23:47 2016-04-15 12:23:47,710 - [DEBUG  ] - application - [securesocial] Jquery path = securesocial/javascripts/jquery-1.7.1.min.js
15-Apr-2016 12:23:47 2016-04-15 12:23:47,710 - [DEBUG  ] - application - [securesocial] custom css path = None
15-Apr-2016 12:23:47 2016-04-15 12:23:47,713 - [DEBUG  ] - application - Getting value for google.analytics
15-Apr-2016 12:23:47 2016-04-15 12:23:47,719 - [DEBUG  ] - application - Getting value for theme
15-Apr-2016 12:23:47 [info] - must render the index page
15-Apr-2016 12:23:48 2016-04-15 12:23:48,007 - [DEBUG  ] - application - Getting value for display.name
15-Apr-2016 12:23:48 2016-04-15 12:23:48,008 - [DEBUG  ] - application - Getting value for google.analytics
15-Apr-2016 12:23:48 [info] - must render index template
15-Apr-2016 12:23:48 2016-04-15 12:23:48,014 - [INFO   ] - application - Staging Area Plugin has stopped
15-Apr-2016 12:23:48 2016-04-15 12:23:48,014 - [INFO   ] - application - [securesocial] unloaded event listener SecureSocialEventListener
15-Apr-2016 12:23:48 2016-04-15 12:23:48,015 - [INFO   ] - application - [securesocial] unloaded identity provider: userpass
15-Apr-2016 12:23:48 2016-04-15 12:23:48,015 - [INFO   ] - application - Application shutdown
15-Apr-2016 12:23:48 2016-04-15 12:23:48,016 - [INFO   ] - application - [securesocial] unloaded password hasher bcrypt
15-Apr-2016 12:23:48 2016-04-15 12:23:48,019 - [INFO   ] - play - Shutdown application default Akka system.
15-Apr-2016 12:23:48 2016-04-15 12:23:48,061 - [DEBUG  ] - application - SwaggerPlugin.onStop
15-Apr-2016 12:23:48 [info] ScalaTest
15-Apr-2016 12:23:48 [info] Run completed in 16 seconds, 877 milliseconds.
15-Apr-2016 12:23:48 [info] Total number of tests run: 83
15-Apr-2016 12:23:48 [info] Suites: completed 7, aborted 0
15-Apr-2016 12:23:48 [info] Tests: succeeded 83, failed 0, canceled 0, ignored 0, pending 0
15-Apr-2016 12:23:48 [info] All tests passed.
15-Apr-2016 12:23:48 [info] Passed: Total 6, Failed 0, Errors 0, Passed 6
15-Apr-2016 12:23:48 [success] Total time: 55 s, completed Apr 15, 2016 12:23:48 PM
15-Apr-2016 12:23:48 Finished task 'test' with result: Success
15-Apr-2016 12:23:48
Substituting variable: ${bamboo.buildNumber} with 1
15-Apr-2016 12:23:48 Starting task 'doc' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
15-Apr-2016 12:23:48
Beginning to execute external process for build 'Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and - default #1 (CATS-CORE452-JOB1-1)'
... running command line:
/home/bamboo/sbt-0.13.2/bin/sbt doc
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_revision_number=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE452-JOB1-1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_15=/bin/sh /tmp/CATS-CORE452-JOB1-1-ScriptBuildTask-7719008879823824257.sh
JAVA_OPTS=-Dbamboo.buildNumber=1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_11=/home/bamboo/sbt-0.13.2/bin/sbt clean update
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=clowder
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
bamboo_buildKey=CATS-CORE452-JOB1
bamboo_capability_system_os=linux
bamboo_shortPlanName=bugfix-SEAD-991-staging-area-select-repository-and
bamboo_planRepository_name=clowder
bamboo_buildNumber=1
bamboo_shortJobName=default
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE452-JOB1-1
bamboo_repository_113377311_name=clowder
bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_repository_113377311_git_username=
bamboo_agentId=108560385
bamboo_planName=Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and
bamboo_shortPlanKey=CORE452
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_repository_113377311_branch_name=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_planRepository_revision=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_buildTimeStamp=2016-04-15T12:18:33.466-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=CATS-CORE452-JOB1-1
bamboo_repository_git_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_repository_branch_name=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_buildPlanName=Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and - default
bamboo_planRepository_1_revision=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_repository_name=clowder
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_repository_113377311_revision_number=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_repository_git_username=
bamboo_repository_113377311_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=stash-rep
bamboo_planRepository_branchName=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_hostname=buildserver-1
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_type=stash-rep
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_7=/home/bamboo/sbt-0.13.2/bin/sbt compile
bamboo_capability_system_builder_ant_Ant=/usr/share/ant
bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_8=/home/bamboo/sbt-0.13.2/bin/sbt test-only integration.APITestSuite
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
bamboo_planKey=CATS-CORE452
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_repository_113377311_git_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/SEAD-991-staging-area-select-repository-and
15-Apr-2016 12:23:48 Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0
15-Apr-2016 12:23:50 [info] Loading project definition from /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/project
15-Apr-2016 12:23:52 [info] Set current project to clowder (in build file:/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/)
15-Apr-2016 12:23:53 [info] Main Scala API documentation to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/api...
15-Apr-2016 12:24:18 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/Global.scala:48: postfix operator minutes should be enabled
15-Apr-2016 12:24:18 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:18 [warn] This can be achieved by adding the import clause 'import scala.language.postfixOps'
15-Apr-2016 12:24:18 [warn] or by setting the compiler option -language:postfixOps.
15-Apr-2016 12:24:18 [warn] See the Scala docs for value scala.language.postfixOps for a discussion
15-Apr-2016 12:24:18 [warn] why the feature should be explicitly enabled.
15-Apr-2016 12:24:18 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
15-Apr-2016 12:24:18 [warn]                                                           ^
15-Apr-2016 12:24:18 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/Global.scala:48: postfix operator minutes should be enabled
15-Apr-2016 12:24:18 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:18 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
15-Apr-2016 12:24:18 [warn]                                                                      ^
15-Apr-2016 12:24:18 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/Global.scala:55: postfix operator minutes should be enabled
15-Apr-2016 12:24:18 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:18 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
15-Apr-2016 12:24:18 [warn]                                                     ^
15-Apr-2016 12:24:18 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/Global.scala:55: postfix operator minutes should be enabled
15-Apr-2016 12:24:18 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:18 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
15-Apr-2016 12:24:18 [warn]                                                                ^
15-Apr-2016 12:24:18 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Admin.scala:153: postfix operator seconds should be enabled
15-Apr-2016 12:24:18 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:18 [warn]     Akka.system.scheduler.scheduleOnce(1 seconds) {
15-Apr-2016 12:24:18 [warn]                                          ^
15-Apr-2016 12:24:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Collections.scala:535: a pure expression does nothing in statement position; you may be omitting necessary parentheses
15-Apr-2016 12:24:20 [warn]           return true
15-Apr-2016 12:24:20 [warn]                  ^
15-Apr-2016 12:24:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Collections.scala:535: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
15-Apr-2016 12:24:20 [warn]           return true
15-Apr-2016 12:24:20 [warn]           ^
15-Apr-2016 12:24:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Collections.scala:537: a pure expression does nothing in statement position; you may be omitting necessary parentheses
15-Apr-2016 12:24:20 [warn]           return false
15-Apr-2016 12:24:20 [warn]                  ^
15-Apr-2016 12:24:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Collections.scala:537: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
15-Apr-2016 12:24:20 [warn]           return false
15-Apr-2016 12:24:20 [warn]           ^
15-Apr-2016 12:24:21 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/CurationObjects.scala:126: postfix operator toList should be enabled
15-Apr-2016 12:24:21 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:21 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
15-Apr-2016 12:24:21 [warn]                                                                                                                                ^
15-Apr-2016 12:24:25 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Files.scala:23: imported `Files' is permanently hidden by definition of class Files in package api
15-Apr-2016 12:24:25 [warn] import play.api.libs.Files
15-Apr-2016 12:24:25 [warn]                      ^
15-Apr-2016 12:24:25 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Files.scala:796: @deprecated now takes two arguments; see the scaladoc.
15-Apr-2016 12:24:25 [warn]   @deprecated
15-Apr-2016 12:24:25 [warn]    ^
15-Apr-2016 12:24:28 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Geostreams.scala:43: postfix operator tupled should be enabled
15-Apr-2016 12:24:28 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:28 [warn]   ) tupled
15-Apr-2016 12:24:28 [warn]     ^
15-Apr-2016 12:24:28 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Geostreams.scala:51: postfix operator tupled should be enabled
15-Apr-2016 12:24:28 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:28 [warn]   ) tupled
15-Apr-2016 12:24:28 [warn]     ^
15-Apr-2016 12:24:28 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Geostreams.scala:60: postfix operator tupled should be enabled
15-Apr-2016 12:24:28 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:28 [warn]   ) tupled
15-Apr-2016 12:24:28 [warn]     ^
15-Apr-2016 12:24:28 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBInstitutionService.scala:3: imported `Institution' is permanently hidden by definition of object Institution in package mongodb
15-Apr-2016 12:24:28 [warn] import models.Institution
15-Apr-2016 12:24:28 [warn]               ^
15-Apr-2016 12:24:29 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBProjectService.scala:3: imported `Project' is permanently hidden by definition of object Project in package mongodb
15-Apr-2016 12:24:29 [warn] import models.Project
15-Apr-2016 12:24:29 [warn]               ^
15-Apr-2016 12:24:32 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/controllers/CurationObjects.scala:344: postfix operator toList should be enabled
15-Apr-2016 12:24:32 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:32 [warn]       metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
15-Apr-2016 12:24:32 [warn]                                                                                                                          ^
15-Apr-2016 12:24:32 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/controllers/CurationObjects.scala:561: postfix operator toList should be enabled
15-Apr-2016 12:24:32 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:32 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
15-Apr-2016 12:24:32 [warn]                                                                                                                                ^
15-Apr-2016 12:24:33 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/controllers/Registration.scala:13: imported `Registration' is permanently hidden by definition of class Registration in package controllers
15-Apr-2016 12:24:33 [warn] import securesocial.controllers.{ProviderController, Registration, TemplatesPlugin}
15-Apr-2016 12:24:33 [warn]                                                      ^
15-Apr-2016 12:24:33 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/controllers/Registration.scala:57: reflective access of structural type member value currentHasher should be enabled
15-Apr-2016 12:24:33 [warn] by making the implicit value scala.language.reflectiveCalls visible.
15-Apr-2016 12:24:33 [warn] This can be achieved by adding the import clause 'import scala.language.reflectiveCalls'
15-Apr-2016 12:24:33 [warn] or by setting the compiler option -language:reflectiveCalls.
15-Apr-2016 12:24:33 [warn] See the Scala docs for value scala.language.reflectiveCalls for a discussion
15-Apr-2016 12:24:33 [warn] why the feature should be explicitly enabled.
15-Apr-2016 12:24:33 [warn]                 passwordInfo = Some(Registry.hashers.currentHasher.hash(info.password))
15-Apr-2016 12:24:33 [warn]                                                      ^
15-Apr-2016 12:24:36 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/models/UUID.scala:36: implicit conversion method stringToUUID should be enabled
15-Apr-2016 12:24:36 [warn] by making the implicit value scala.language.implicitConversions visible.
15-Apr-2016 12:24:36 [warn] This can be achieved by adding the import clause 'import scala.language.implicitConversions'
15-Apr-2016 12:24:36 [warn] or by setting the compiler option -language:implicitConversions.
15-Apr-2016 12:24:36 [warn] See the Scala docs for value scala.language.implicitConversions for a discussion
15-Apr-2016 12:24:36 [warn] why the feature should be explicitly enabled.
15-Apr-2016 12:24:36 [warn]   implicit def stringToUUID(s: String) = UUID(s)
15-Apr-2016 12:24:36 [warn]                ^
15-Apr-2016 12:24:36 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/models/UUID.scala:37: implicit conversion method uuidToObjectId should be enabled
15-Apr-2016 12:24:36 [warn] by making the implicit value scala.language.implicitConversions visible.
15-Apr-2016 12:24:36 [warn]   implicit def uuidToObjectId(uuid: UUID) = new ObjectId(uuid.stringify)
15-Apr-2016 12:24:36 [warn]                ^
15-Apr-2016 12:24:36 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/models/UUID.scala:38: implicit conversion method objectIdToUUID should be enabled
15-Apr-2016 12:24:36 [warn] by making the implicit value scala.language.implicitConversions visible.
15-Apr-2016 12:24:36 [warn]   implicit def objectIdToUUID(objectId: ObjectId) = UUID(objectId.toString)
15-Apr-2016 12:24:36 [warn]                ^
15-Apr-2016 12:24:36 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/models/User.scala:75: implicit conversion method userToMiniUser should be enabled
15-Apr-2016 12:24:36 [warn] by making the implicit value scala.language.implicitConversions visible.
15-Apr-2016 12:24:36 [warn]   implicit def userToMiniUser(x: User): MiniUser = x.getMiniUser
15-Apr-2016 12:24:36 [warn]                ^
15-Apr-2016 12:24:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/PolyglotPlugin.scala:83: postfix operator seconds should be enabled
15-Apr-2016 12:24:37 [warn] by making the implicit value scala.language.postfixOps visible.
15-Apr-2016 12:24:37 [warn]           akka.pattern.after(3 seconds, using = Akka.system.scheduler)(checkForFileAndDownload((triesLeft - 1), url, outputStream))
15-Apr-2016 12:24:37 [warn]                                ^
15-Apr-2016 12:24:38 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoContext.scala:253: implicit conversion method dbObjectToString should be enabled
15-Apr-2016 12:24:38 [warn] by making the implicit value scala.language.implicitConversions visible.
15-Apr-2016 12:24:38 [warn]   implicit def dbObjectToString(dbObject: DBObject): String = {
15-Apr-2016 12:24:38 [warn]                ^
15-Apr-2016 12:24:38 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBCollectionService.scala:11: imported `Collection' is permanently hidden by definition of object Collection in package mongodb
15-Apr-2016 12:24:38 [warn] import models.{User, UUID, Collection, Dataset}
15-Apr-2016 12:24:38 [warn]                            ^
15-Apr-2016 12:24:38 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBCollectionService.scala:11: imported `Dataset' is permanently hidden by definition of object Dataset in package mongodb
15-Apr-2016 12:24:38 [warn] import models.{User, UUID, Collection, Dataset}
15-Apr-2016 12:24:38 [warn]                                        ^
15-Apr-2016 12:24:38 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBCommentService.scala:3: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
15-Apr-2016 12:24:38 [warn] import models.{UUID, Comment}
15-Apr-2016 12:24:38 [warn]                      ^
15-Apr-2016 12:24:39 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBTagService.scala:7: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
15-Apr-2016 12:24:39 [warn] import models.{Tag, UUID}
15-Apr-2016 12:24:39 [warn]                ^
15-Apr-2016 12:24:40 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBExtractionRequestsService.scala:20: imported `MongoSalatPlugin' is permanently hidden by definition of class MongoSalatPlugin in package mongodb
15-Apr-2016 12:24:40 [warn] import services.mongodb.MongoSalatPlugin
15-Apr-2016 12:24:40 [warn]                         ^
15-Apr-2016 12:24:40 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBExtractionService.scala:4: imported `Extraction' is permanently hidden by definition of object Extraction in package mongodb
15-Apr-2016 12:24:40 [warn] import models.{UUID, Extraction}
15-Apr-2016 12:24:40 [warn]                      ^
15-Apr-2016 12:24:40 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBExtractionService.scala:13: imported `WebPageResource' is permanently hidden by definition of object WebPageResource in package mongodb
15-Apr-2016 12:24:40 [warn] import models.WebPageResource
15-Apr-2016 12:24:40 [warn]               ^
15-Apr-2016 12:24:43 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBSectionService.scala:4: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
15-Apr-2016 12:24:43 [warn] import models.{UUID, Tag, Comment, Section}
15-Apr-2016 12:24:43 [warn]                      ^
15-Apr-2016 12:24:43 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBSectionService.scala:4: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
15-Apr-2016 12:24:43 [warn] import models.{UUID, Tag, Comment, Section}
15-Apr-2016 12:24:43 [warn]                           ^
15-Apr-2016 12:24:44 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBSpaceService.scala:24: imported `Collection' is permanently hidden by definition of object Collection in package mongodb
15-Apr-2016 12:24:44 [warn] import models.Collection
15-Apr-2016 12:24:44 [warn]               ^
15-Apr-2016 12:24:44 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBSpaceService.scala:25: imported `Dataset' is permanently hidden by definition of object Dataset in package mongodb
15-Apr-2016 12:24:44 [warn] import models.Dataset
15-Apr-2016 12:24:44 [warn]               ^
15-Apr-2016 12:24:59 model contains 796 documentable templates
15-Apr-2016 12:25:05 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/irods/IRODSPlugin.scala:9: Tag '@date' is not recognised
15-Apr-2016 12:25:05 [warn] /**
15-Apr-2016 12:25:05 [warn] ^
15-Apr-2016 12:25:15 [warn] 39 warnings found
15-Apr-2016 12:25:15 [info] Main Scala API documentation successful.
15-Apr-2016 12:25:15 [success] Total time: 83 s, completed Apr 15, 2016 12:25:15 PM
15-Apr-2016 12:25:15 Finished task 'doc' with result: Success
15-Apr-2016 12:25:15
Substituting variable: ${bamboo.buildNumber} with 1
15-Apr-2016 12:25:15 Starting task 'dist' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
15-Apr-2016 12:25:15
Beginning to execute external process for build 'Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and - default #1 (CATS-CORE452-JOB1-1)'
... running command line:
/home/bamboo/sbt-0.13.2/bin/sbt dist
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_revision_number=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE452-JOB1-1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_15=/bin/sh /tmp/CATS-CORE452-JOB1-1-ScriptBuildTask-7719008879823824257.sh
JAVA_OPTS=-Dbamboo.buildNumber=1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_11=/home/bamboo/sbt-0.13.2/bin/sbt clean update
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=clowder
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
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bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_repository_113377311_branch_name=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_planRepository_revision=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_buildTimeStamp=2016-04-15T12:18:33.466-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=CATS-CORE452-JOB1-1
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bamboo_planRepository_1_revision=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_repository_name=clowder
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bamboo_repository_113377311_revision_number=73ed024448334c22e98797c3ee8953f3d834dcbf
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bamboo_capability_system_git_executable=/usr/bin/git
bamboo_repository_git_username=
bamboo_repository_113377311_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
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bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_9=/home/bamboo/sbt-0.13.2/bin/sbt doc
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_8=/home/bamboo/sbt-0.13.2/bin/sbt test-only integration.APITestSuite
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bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
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15-Apr-2016 12:25:15 Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0
15-Apr-2016 12:25:19 [info] Loading project definition from /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/project
15-Apr-2016 12:25:20 [info] Set current project to clowder (in build file:/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/)
15-Apr-2016 12:25:21 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/clowder_2.10-0.9.2-SNAPSHOT-sources.jar ...
15-Apr-2016 12:25:21 [info] Done packaging.
15-Apr-2016 12:25:22 [info] Wrote /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/clowder_2.10-0.9.2-SNAPSHOT.pom
15-Apr-2016 12:25:23 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/clowder_2.10-0.9.2-SNAPSHOT-javadoc.jar ...
15-Apr-2016 12:25:24 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/clowder_2.10-0.9.2-SNAPSHOT.jar ...
15-Apr-2016 12:25:24 [info] Done packaging.
15-Apr-2016 12:25:27 [info] Done packaging.
15-Apr-2016 12:25:39 [info]
15-Apr-2016 12:25:39 [info] Your package is ready in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/universal/clowder-0.9.2-SNAPSHOT.zip
15-Apr-2016 12:25:39 [info]
15-Apr-2016 12:25:39 [success] Total time: 19 s, completed Apr 15, 2016 12:25:39 PM
15-Apr-2016 12:25:39 Finished task 'dist' with result: Success
15-Apr-2016 12:25:39 Starting task 'sphinx' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
15-Apr-2016 12:25:39
Beginning to execute external process for build 'Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and - default #1 (CATS-CORE452-JOB1-1)'
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15-Apr-2016 12:25:41 Making output directory...
15-Apr-2016 12:25:41 Running Sphinx v1.2.2
15-Apr-2016 12:25:41 loading pickled environment... not yet created
15-Apr-2016 12:25:41 building [html]: targets for 12 source files that are out of date
15-Apr-2016 12:25:41 updating environment: 12 added, 0 changed, 0 removed
15-Apr-2016 12:25:41 reading sources... [  8%] api
15-Apr-2016 12:25:42 reading sources... [ 16%] architecture
15-Apr-2016 12:25:42 reading sources... [ 25%] extractors
15-Apr-2016 12:25:42 reading sources... [ 33%] index
15-Apr-2016 12:25:42 reading sources... [ 41%] installation
15-Apr-2016 12:25:42 reading sources... [ 50%] license
15-Apr-2016 12:25:42 reading sources... [ 58%] overview
15-Apr-2016 12:25:42 reading sources... [ 66%] previewers
15-Apr-2016 12:25:42 reading sources... [ 75%] setup
15-Apr-2016 12:25:42 reading sources... [ 83%] setup_dev
15-Apr-2016 12:25:42 reading sources... [ 91%] source
15-Apr-2016 12:25:42 reading sources... [100%] thankyou
15-Apr-2016 12:25:42
15-Apr-2016 12:25:42 looking for now-outdated files... none found
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/license.rst:10: WARNING: Title underline too short.
15-Apr-2016 12:25:42
15-Apr-2016 12:25:42 Contributors
15-Apr-2016 12:25:42 -------
15-Apr-2016 12:25:42 pickling environment... done
15-Apr-2016 12:25:42 checking consistency... done
15-Apr-2016 12:25:42 preparing documents... done
15-Apr-2016 12:25:42 writing output... [  8%] api
15-Apr-2016 12:25:42 writing output... [ 16%] architecture
15-Apr-2016 12:25:42 writing output... [ 25%] extractors
15-Apr-2016 12:25:42 writing output... [ 33%] index
15-Apr-2016 12:25:42 writing output... [ 41%] installation
15-Apr-2016 12:25:42 writing output... [ 50%] license
15-Apr-2016 12:25:42 writing output... [ 58%] overview
15-Apr-2016 12:25:42 writing output... [ 66%] previewers
15-Apr-2016 12:25:42 writing output... [ 75%] setup
15-Apr-2016 12:25:42 writing output... [ 83%] setup_dev
15-Apr-2016 12:25:42 writing output... [ 91%] source
15-Apr-2016 12:25:42 writing output... [100%] thankyou
15-Apr-2016 12:25:42
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
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15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
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15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:42 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
15-Apr-2016 12:25:43 writing additional files... genindex search
15-Apr-2016 12:25:43 copying images... [ 20%] _static/dataset.png
15-Apr-2016 12:25:43 copying images... [ 40%] _static/data-model.jpg
15-Apr-2016 12:25:43 copying images... [ 60%] _static/extraction.jpg
15-Apr-2016 12:25:43 copying images... [ 80%] _static/architecture.jpg
15-Apr-2016 12:25:43 copying images... [100%] _static/logo_full.png
15-Apr-2016 12:25:43
15-Apr-2016 12:25:43 copying static files... done
15-Apr-2016 12:25:43 copying extra files... done
15-Apr-2016 12:25:43 dumping search index... done
15-Apr-2016 12:25:43 dumping object inventory... done
15-Apr-2016 12:25:43 build succeeded, 31 warnings.
15-Apr-2016 12:25:43 Finished task 'sphinx' with result: Success
15-Apr-2016 12:25:43 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
15-Apr-2016 12:25:43
Beginning to execute external process for build 'Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and - default #1 (CATS-CORE452-JOB1-1)'
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bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_7=/home/bamboo/sbt-0.13.2/bin/sbt compile
bamboo_capability_system_builder_ant_Ant=/usr/share/ant
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_9=/home/bamboo/sbt-0.13.2/bin/sbt doc
bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_8=/home/bamboo/sbt-0.13.2/bin/sbt test-only integration.APITestSuite
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
bamboo_planKey=CATS-CORE452
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_repository_113377311_git_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/SEAD-991-staging-area-select-repository-and
15-Apr-2016 12:25:46 Sending build context to Docker daemon 557.1 kB
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15-Apr-2016 12:25:48 Sending build context to Docker daemon   142 MB
15-Apr-2016 12:25:48 Sending build context to Docker daemon 142.6 MB
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15-Apr-2016 12:25:48
15-Apr-2016 12:25:48 Step 1 : FROM java:8-jre
15-Apr-2016 12:25:49 8-jre: Pulling from library/java
15-Apr-2016 12:25:49 efd26ecc9548: Already exists
15-Apr-2016 12:25:49 a3ed95caeb02: Already exists
15-Apr-2016 12:25:49 d1784d73276e: Already exists
15-Apr-2016 12:25:49 52a884c93bb2: Already exists
15-Apr-2016 12:25:49 070ee56a6f7e: Already exists
15-Apr-2016 12:25:49 a3ed95caeb02: Already exists
15-Apr-2016 12:25:49 f8b8b1302b4f: Already exists
15-Apr-2016 12:25:49 a3ed95caeb02: Already exists
15-Apr-2016 12:25:49 a3ed95caeb02: Already exists
15-Apr-2016 12:25:49 a3ed95caeb02: Already exists
15-Apr-2016 12:25:49 a3ed95caeb02: Already exists
15-Apr-2016 12:25:49 e71221cc9598: Already exists
15-Apr-2016 12:25:49 349c9e35d503: Already exists
15-Apr-2016 12:25:49 Digest: sha256:59f5607caf2d84109e00f118d60bf803360ce73cdfd1c4bc1c420dee6d1ac18c
15-Apr-2016 12:25:49 Status: Image is up to date for java:8-jre
15-Apr-2016 12:25:49 ---> 570b0e0945fe
15-Apr-2016 12:25:49 Step 2 : MAINTAINER Rob Kooper <kooper@illinois.edu>
15-Apr-2016 12:25:49 ---> Using cache
15-Apr-2016 12:25:49 ---> 95c45c5aef92
15-Apr-2016 12:25:49 Step 3 : EXPOSE 9000
15-Apr-2016 12:25:49 ---> Using cache
15-Apr-2016 12:25:49 ---> 6c8126ddb258
15-Apr-2016 12:25:49 Step 4 : ENV CLOWDER_CONTEXT "/" CLOWDER_ADMINS "" MONGO_URI "" SMTP_HOST "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_URI "" RABBITMQ_MGMT_PORT "" ELASTICSEARCH_SERVICE_CLUSTERNAME "clowder" ELASTICSEARCH_SERVICE_SERVER "" ELASTICSEARCH_SERVICE_PORT "" TOOLMANAGER_URI ""
15-Apr-2016 12:25:49 ---> Using cache
15-Apr-2016 12:25:49 ---> 439a5dd52f1e
15-Apr-2016 12:25:49 Step 5 : RUN useradd -s /bin/bash clowder
15-Apr-2016 12:25:49 ---> Using cache
15-Apr-2016 12:25:49 ---> 33e708c50c4e
15-Apr-2016 12:25:49 Step 6 : COPY files entrypoint.sh /home/clowder/
15-Apr-2016 12:25:56 ---> a89b13f131bc
15-Apr-2016 12:25:56 Removing intermediate container 7c494fe91e4d
15-Apr-2016 12:25:56 Step 7 : RUN chown -R clowder /home/clowder/clowder
15-Apr-2016 12:25:56 ---> Running in 7e27392cbfcd
15-Apr-2016 12:26:02 ---> d322097b4cf6
15-Apr-2016 12:26:02 Removing intermediate container 7e27392cbfcd
15-Apr-2016 12:26:02 Step 8 : ENTRYPOINT /home/clowder/entrypoint.sh
15-Apr-2016 12:26:02 ---> Running in 44029313b119
15-Apr-2016 12:26:02 ---> 4b6858e7fe3e
15-Apr-2016 12:26:02 Removing intermediate container 44029313b119
15-Apr-2016 12:26:02 Step 9 : CMD server
15-Apr-2016 12:26:02 ---> Running in 81bc698af584
15-Apr-2016 12:26:02 ---> e8f09c76f750
15-Apr-2016 12:26:02 Removing intermediate container 81bc698af584
15-Apr-2016 12:26:02 Step 10 : USER clowder
15-Apr-2016 12:26:02 ---> Running in d1b189389c29
15-Apr-2016 12:26:02 ---> 3797f575ef8c
15-Apr-2016 12:26:02 Removing intermediate container d1b189389c29
15-Apr-2016 12:26:02 Successfully built 3797f575ef8c
15-Apr-2016 12:26:02 Sending build context to Docker daemon 22.02 kB
15-Apr-2016 12:26:02
15-Apr-2016 12:26:02 Step 1 : FROM ubuntu
15-Apr-2016 12:26:03 latest: Pulling from library/ubuntu
15-Apr-2016 12:26:03 759d6771041e: Already exists
15-Apr-2016 12:26:03 8836b825667b: Already exists
15-Apr-2016 12:26:03 c2f5e51744e6: Already exists
15-Apr-2016 12:26:03 a3ed95caeb02: Already exists
15-Apr-2016 12:26:03 Digest: sha256:b4dbab2d8029edddfe494f42183de20b7e2e871a424ff16ffe7b15a31f102536
15-Apr-2016 12:26:03 Status: Image is up to date for ubuntu:latest
15-Apr-2016 12:26:03 ---> b72889fa879c
15-Apr-2016 12:26:03 Step 2 : RUN apt-get -y update     && apt-get -y install curl unzip docker.io python python-dev python-pip     && pip install flask-restful     && pip install arrow     && apt-get clean all     && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*     ;
15-Apr-2016 12:26:03 ---> Using cache
15-Apr-2016 12:26:03 ---> d298e947370d
15-Apr-2016 12:26:03 Step 3 : COPY FILES.toolserver /
15-Apr-2016 12:26:03 ---> Using cache
15-Apr-2016 12:26:03 ---> 550f053d1798
15-Apr-2016 12:26:03 Step 4 : ENV TOOLSERVER_PORT 8082
15-Apr-2016 12:26:03 ---> Using cache
15-Apr-2016 12:26:03 ---> 50351e77cbcc
15-Apr-2016 12:26:03 Step 5 : CMD /usr/local/bin/usage
15-Apr-2016 12:26:03 ---> Using cache
15-Apr-2016 12:26:03 ---> a934dc96de29
15-Apr-2016 12:26:03 Successfully built a934dc96de29
15-Apr-2016 12:26:03 Tagged clowder toolserver with local
15-Apr-2016 12:26:03 Untagged: toolserver-649:latest
15-Apr-2016 12:26:03 Untagged: clowder-649:latest
15-Apr-2016 12:26:04 Finished task 'docker build' with result: Success
15-Apr-2016 12:26:04 Starting task 'junit' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
15-Apr-2016 12:26:04 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1...
15-Apr-2016 12:26:04 Finished task 'junit' with result: Success
15-Apr-2016 12:26:04 Running post build plugin 'Docker Container Cleanup'
15-Apr-2016 12:26:04 Running post build plugin 'NCover Results Collector'
15-Apr-2016 12:26:04 Running post build plugin 'Clover Results Collector'
15-Apr-2016 12:26:04 Running post build plugin 'npm Cache Cleanup'
15-Apr-2016 12:26:04 Running post build plugin 'Artifact Copier'
15-Apr-2016 12:26:04 Publishing an artifact: dist
15-Apr-2016 12:26:15 Finished publishing of artifact Shared artifact: [dist], pattern: [clowder-*.zip] anchored at: [target/universal] in 10s
15-Apr-2016 12:26:15 Publishing an artifact: scaladoc
15-Apr-2016 12:26:17 Finished publishing of artifact Shared artifact: [scaladoc], pattern: [**/*] anchored at: [target/scala-2.10/api] in 1s
15-Apr-2016 12:26:17 Publishing an artifact: manual
15-Apr-2016 12:26:18 Finished publishing of artifact Shared artifact: [manual], pattern: [**/*] anchored at: [doc/src/sphinx/_build/html] in 1s
15-Apr-2016 12:26:18 Finalising the build...
15-Apr-2016 12:26:18 Stopping timer.
15-Apr-2016 12:26:18 Build CATS-CORE452-JOB1-1 completed.
15-Apr-2016 12:26:18 Running on server: post build plugin 'NCover Results Collector'
15-Apr-2016 12:26:18 Running on server: post build plugin 'Build Hanging Detection Configuration'
15-Apr-2016 12:26:18 Running on server: post build plugin 'Clover Delta Calculator'
15-Apr-2016 12:26:18 Running on server: post build plugin 'Maven Dependencies Postprocessor'
15-Apr-2016 12:26:18 All post build plugins have finished
15-Apr-2016 12:26:18 Generating build results summary...
15-Apr-2016 12:26:18 Saving build results to disk...
15-Apr-2016 12:26:18 Logging substituted variables...
15-Apr-2016 12:26:18 Indexing build results...
15-Apr-2016 12:26:18 Finished building CATS-CORE452-JOB1-1.