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Job: default was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 2,723 lines of output.The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.

19-Apr-2016 14:04:36 2016-04-19 14:04:36,450 - [DEBUG  ] - application - techmd={}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,450 - [DEBUG  ] - application - xmlmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,451 - [INFO   ] - application - Adding file to dataset completed
19-Apr-2016 14:04:36 2016-04-19 14:04:36,453 - [DEBUG  ] - application - tagStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,453 - [DEBUG  ] - application - commentStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,454 - [DEBUG  ] - application - usrmd={}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,455 - [DEBUG  ] - application - techmd={}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,455 - [DEBUG  ] - application - xmlmd={ }
19-Apr-2016 14:04:36 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 1 Creation
19-Apr-2016 14:04:36 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
19-Apr-2016 14:04:36 [info]   + Status=200
19-Apr-2016 14:04:36 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:36 [info]   + contentAsString{"id":"5716814460b23dd83442a3e7"}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,470 - [DEBUG  ] - application - File1 is File:True
19-Apr-2016 14:04:36 2016-04-19 14:04:36,588 - [DEBUG  ] - application - Uploading file dataset-image-1.zip
19-Apr-2016 14:04:36 2016-04-19 14:04:36,665 - [DEBUG  ] - application - --- API Creating new dataset ----
19-Apr-2016 14:04:36 2016-04-19 14:04:36,676 - [DEBUG  ] - application - tagStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,677 - [DEBUG  ] - application - commentStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,677 - [DEBUG  ] - application - usrmd={}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,677 - [DEBUG  ] - application - techmd={}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,678 - [DEBUG  ] - application - xmlmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,679 - [INFO   ] - application - Adding file to dataset completed
19-Apr-2016 14:04:36 2016-04-19 14:04:36,685 - [DEBUG  ] - application - tagStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,685 - [DEBUG  ] - application - commentStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,685 - [DEBUG  ] - application - usrmd={}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,686 - [DEBUG  ] - application - techmd={}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,686 - [DEBUG  ] - application - xmlmd={ }
19-Apr-2016 14:04:36 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 2 Creation
19-Apr-2016 14:04:36 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
19-Apr-2016 14:04:36 [info]   + Status=200
19-Apr-2016 14:04:36 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:36 [info]   + contentAsString{"id":"5716814460b23dd83442a3fe"}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,721 - [DEBUG  ] - application - Adding dataset 5716814460b23dd83442a3e7 to collection 5716814460b23dd83442a3d1
19-Apr-2016 14:04:36 2016-04-19 14:04:36,725 - [DEBUG  ] - application - tagStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,726 - [DEBUG  ] - application - commentStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,726 - [DEBUG  ] - application - retmd: { }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,730 - [DEBUG  ] - application - usrmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,731 - [DEBUG  ] - application - retmd: { }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,731 - [DEBUG  ] - application - techmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,731 - [DEBUG  ] - application - retmd: [ ]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,731 - [DEBUG  ] - application - xmlmd=[ ]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,745 - [DEBUG  ] - application - Adding dataset to collection completed
19-Apr-2016 14:04:36 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 1
19-Apr-2016 14:04:36 [info]   + Status=200
19-Apr-2016 14:04:36 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:36 [info]   + contentAsString{"datasetsInCollection":1}
19-Apr-2016 14:04:36 [info] - must respond to the listInCollection(coll_id: UUID) function routed by GET /api/collections/:coll_id/getDatasets
19-Apr-2016 14:04:36 [info]   + Status_Get=200
19-Apr-2016 14:04:36 [info]   + contentType_Get=Some(application/json)
19-Apr-2016 14:04:36 [info]   + Pretty JSON format
19-Apr-2016 14:04:36 [info]   + [ {
19-Apr-2016 14:04:36 [info]   "id" : "5716814460b23dd83442a3e7",
19-Apr-2016 14:04:36 [info]   "name" : "Dataset 1 API Test Creation",
19-Apr-2016 14:04:36 [info]   "description" : "Part 1 of Dataset API Test Suite",
19-Apr-2016 14:04:36 [info]   "created" : "Tue Apr 19 14:04:36 CDT 2016",
19-Apr-2016 14:04:36 [info]   "thumbnail" : "None",
19-Apr-2016 14:04:36 [info]   "authorId" : "000000000000000000000000"
19-Apr-2016 14:04:36 [info] } ]
19-Apr-2016 14:04:36 [info] - must respond to the listOutsideCollection(coll_id: UUID) function routed by GET /api/datasets/listOutsideCollection/:coll_id
19-Apr-2016 14:04:36 [info]   + Status_Get=200
19-Apr-2016 14:04:36 [info]   + contentType_Get=Some(application/json)
19-Apr-2016 14:04:36 [info]   + Pretty JSON format
19-Apr-2016 14:04:36 [info]   + [ {
19-Apr-2016 14:04:36 [info]   "id" : "5716814460b23dd83442a3fe",
19-Apr-2016 14:04:36 [info]   "name" : "Dataset 2 API Test Creation",
19-Apr-2016 14:04:36 [info]   "description" : "Part 2 of Dataset API Test Suite",
19-Apr-2016 14:04:36 [info]   "created" : "Tue Apr 19 14:04:36 CDT 2016",
19-Apr-2016 14:04:36 [info]   "thumbnail" : "None",
19-Apr-2016 14:04:36 [info]   "authorId" : "000000000000000000000000"
19-Apr-2016 14:04:36 [info] }, {
19-Apr-2016 14:04:36 [info]   "id" : "5716814460b23dd83442a3e7",
19-Apr-2016 14:04:36 [info]   "name" : "Dataset 1 API Test Creation",
19-Apr-2016 14:04:36 [info]   "description" : "Part 1 of Dataset API Test Suite",
19-Apr-2016 14:04:36 [info]   "created" : "Tue Apr 19 14:04:36 CDT 2016",
19-Apr-2016 14:04:36 [info]   "thumbnail" : "None",
19-Apr-2016 14:04:36 [info]   "authorId" : "000000000000000000000000"
19-Apr-2016 14:04:36 [info] } ]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,777 - [DEBUG  ] - application - Adding dataset 5716814460b23dd83442a3fe to collection 5716814460b23dd83442a3d1
19-Apr-2016 14:04:36 2016-04-19 14:04:36,779 - [DEBUG  ] - application - tagStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,780 - [DEBUG  ] - application - commentStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,780 - [DEBUG  ] - application - retmd: { }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,780 - [DEBUG  ] - application - usrmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,781 - [DEBUG  ] - application - retmd: { }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,781 - [DEBUG  ] - application - techmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,781 - [DEBUG  ] - application - retmd: [ ]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,781 - [DEBUG  ] - application - xmlmd=[ ]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,786 - [DEBUG  ] - application - Adding dataset to collection completed
19-Apr-2016 14:04:36 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 2
19-Apr-2016 14:04:36 [info]   + Status=200
19-Apr-2016 14:04:36 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:36 [info]   + contentAsString{"datasetsInCollection":2}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,809 - [DEBUG  ] - application - Removing dataset 5716814460b23dd83442a3fe from collection 5716814460b23dd83442a3d1
19-Apr-2016 14:04:36 2016-04-19 14:04:36,815 - [DEBUG  ] - application - tagStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,816 - [DEBUG  ] - application - commentStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,816 - [DEBUG  ] - application - retmd: { }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,817 - [DEBUG  ] - application - usrmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,818 - [DEBUG  ] - application - retmd: { }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,818 - [DEBUG  ] - application - techmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,818 - [DEBUG  ] - application - retmd: [ ]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,818 - [DEBUG  ] - application - xmlmd=[ ]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,823 - [INFO   ] - application - Removing dataset from collection completed
19-Apr-2016 14:04:36 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNotFound) function routed by DELETE /api/collections/:coll_id/datasets/:ds_id for dataset 2
19-Apr-2016 14:04:36 [info]   + Status=200
19-Apr-2016 14:04:36 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:36 [info]   + contentAsString{"status":"success"}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,836 - [DEBUG  ] - application - Removing dataset 5716814460b23dd83442a3e7 from collection 5716814460b23dd83442a3d1
19-Apr-2016 14:04:36 2016-04-19 14:04:36,838 - [DEBUG  ] - application - tagStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,839 - [DEBUG  ] - application - commentStr=[]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,839 - [DEBUG  ] - application - retmd: { }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,839 - [DEBUG  ] - application - usrmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,840 - [DEBUG  ] - application - retmd: { }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,840 - [DEBUG  ] - application - techmd={ }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,840 - [DEBUG  ] - application - retmd: [ ]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,840 - [DEBUG  ] - application - xmlmd=[ ]
19-Apr-2016 14:04:36 2016-04-19 14:04:36,842 - [INFO   ] - application - Removing dataset from collection completed
19-Apr-2016 14:04:36 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNoteFound) function routed by POST /api/collections/:coll_id/datasets/:ds_id/:ignoreNotFound for dataset 2
19-Apr-2016 14:04:36 [info]   + Status=200
19-Apr-2016 14:04:36 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:36 [info]   + contentAsString{"status":"success"}
19-Apr-2016 14:04:36 2016-04-19 14:04:36,850 - [DEBUG  ] - application - userdfSPARQLStore not enabled
19-Apr-2016 14:04:36 2016-04-19 14:04:36,854 - [DEBUG  ] - application - Removing XML metadata belonging to file 5716814460b23dd83442a3e3 from dataset 5716814460b23dd83442a3e7.
19-Apr-2016 14:04:36 2016-04-19 14:04:36,860 - [ERROR  ] - application - File not found: 5716814460b23dd83442a3e3
19-Apr-2016 14:04:36 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 1
19-Apr-2016 14:04:36 [info]   + Status_Get=200
19-Apr-2016 14:04:36 [info]   + contentType_Get=Some(application/json)
19-Apr-2016 14:04:36 [info]   + Pretty JSON format
19-Apr-2016 14:04:36 [info]   + {
19-Apr-2016 14:04:36 [info]   "status" : "success"
19-Apr-2016 14:04:36 [info] }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,868 - [DEBUG  ] - application - userdfSPARQLStore not enabled
19-Apr-2016 14:04:36 2016-04-19 14:04:36,877 - [DEBUG  ] - application - Removing XML metadata belonging to file 5716814460b23dd83442a3fa from dataset 5716814460b23dd83442a3fe.
19-Apr-2016 14:04:36 2016-04-19 14:04:36,885 - [ERROR  ] - application - File not found: 5716814460b23dd83442a3fa
19-Apr-2016 14:04:36 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 2
19-Apr-2016 14:04:36 [info]   + Status_Get=200
19-Apr-2016 14:04:36 [info]   + contentType_Get=Some(application/json)
19-Apr-2016 14:04:36 [info]   + Pretty JSON format
19-Apr-2016 14:04:36 [info]   + {
19-Apr-2016 14:04:36 [info]   "status" : "success"
19-Apr-2016 14:04:36 [info] }
19-Apr-2016 14:04:36 [info] - must respond to the listCollections() function routed by GET /api/collections
19-Apr-2016 14:04:36 [info]   + Status=200
19-Apr-2016 14:04:36 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:36 [info]   + content[]
19-Apr-2016 14:04:36 [info] - must respond to the listCollections() function routed by GET /api/collections/list
19-Apr-2016 14:04:36 [info]   + Status=200
19-Apr-2016 14:04:36 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:36 [info]   + content[]
19-Apr-2016 14:04:36 [info] - must respond to the removeCollection(coll_id:UUID) function routed by POST /api/collections/:coll_id/remove 
19-Apr-2016 14:04:36 [info]   + Status_Get=200
19-Apr-2016 14:04:36 [info]   + contentType_Get=Some(application/json)
19-Apr-2016 14:04:36 [info]   + Pretty JSON format
19-Apr-2016 14:04:36 [info]   + {
19-Apr-2016 14:04:36 [info]   "status" : "success"
19-Apr-2016 14:04:36 [info] }
19-Apr-2016 14:04:36 [info] - must respond to the removeCollection(coll_id:UUID) function routed by DELETE /api/collections/:id 
19-Apr-2016 14:04:36 [info]   + Status_Get=200
19-Apr-2016 14:04:36 [info]   + contentType_Get=Some(application/json)
19-Apr-2016 14:04:36 [info]   + Pretty JSON format
19-Apr-2016 14:04:36 [info]   + {
19-Apr-2016 14:04:36 [info]   "status" : "success"
19-Apr-2016 14:04:36 [info] }
19-Apr-2016 14:04:36 2016-04-19 14:04:36,941 - [DEBUG  ] - application - File1 is File:True
19-Apr-2016 14:04:36 [info] PreviewsAPIAppSpec:
19-Apr-2016 14:04:36 [info] The Previews API Spec
19-Apr-2016 14:04:36 [info] - must provide a FakeApplication
19-Apr-2016 14:04:36 [info] - must make the FakeApplication available implicitly
19-Apr-2016 14:04:36 [info] - must start the FakeApplication
19-Apr-2016 14:04:36 [info] The Previews API Spec
19-Apr-2016 14:04:37 2016-04-19 14:04:37,006 - [DEBUG  ] - application - Uploading file morrowplots.jpg
19-Apr-2016 14:04:37 [info] - must respond to the Upload File
19-Apr-2016 14:04:37 2016-04-19 14:04:37,033 - [DEBUG  ] - application - File1 is File:True
19-Apr-2016 14:04:37 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
19-Apr-2016 14:04:37 [info]   + Status=200
19-Apr-2016 14:04:37 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:37 [info]   + contentAsString{"id":"5716814560b23dd83442a410"}
19-Apr-2016 14:04:37 2016-04-19 14:04:37,064 - [DEBUG  ] - application - ########Uploading Preview----morrowplots-preview.jpg
19-Apr-2016 14:04:37 2016-04-19 14:04:37,106 - [DEBUG  ] - application - ctp: Some(application/octet-stream)
19-Apr-2016 14:04:37 [info] - must respond to the upload() and download() function routed by POST/GET /api/previews
19-Apr-2016 14:04:37 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
19-Apr-2016 14:04:37 [info]   + Status=200
19-Apr-2016 14:04:37 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:37 [info]   + contentAsString{"id":"5716814560b23dd83442a415"}
19-Apr-2016 14:04:37 [info]   + Pretty JSON format
19-Apr-2016 14:04:37 [info]   + {
19-Apr-2016 14:04:37 [info]   "id" : "5716814560b23dd83442a415"
19-Apr-2016 14:04:37 [info] }
19-Apr-2016 14:04:37 [info]   + id value 5716814560b23dd83442a415
19-Apr-2016 14:04:37 [info]   + Status=200
19-Apr-2016 14:04:37 [info]   + contentType=Some(image/jpeg)
19-Apr-2016 14:04:37 2016-04-19 14:04:37,172 - [DEBUG  ] - application - File2 is File:True
19-Apr-2016 14:04:37 2016-04-19 14:04:37,180 - [DEBUG  ] - application - {"Image":"fid","extractor_id":"test-extractor"}
19-Apr-2016 14:04:37 2016-04-19 14:04:37,180 - [DEBUG  ] - application - ListBuffer((Image,"fid"), (extractor_id,"test-extractor"))
19-Apr-2016 14:04:37 2016-04-19 14:04:37,183 - [DEBUG  ] - application - Updating previews.files 5716814560b23dd83442a415 with Map(Image -> fid, extractor_id -> test-extractor)
19-Apr-2016 14:04:37 2016-04-19 14:04:37,198 - [DEBUG  ] - application - api.Files.attachPreview(): No "extractor_id" specified in request, set it to None.  request.body: {}
19-Apr-2016 14:04:37 2016-04-19 14:04:37,200 - [DEBUG  ] - application - attachToFile: extractorId is 'Some(Other)'.
19-Apr-2016 14:04:37 2016-04-19 14:04:37,204 - [DEBUG  ] - application - Updating previews.files 5716814560b23dd83442a415 with Map()
19-Apr-2016 14:04:37 [info]   + contentAsString2000
19-Apr-2016 14:04:37 [info] ������������JFIFHH���������ExifMM*n
19-Apr-2016 14:04:37 [info] v���������%LLgoogleNexus OneHH        ���0220������������0100������������
19-Apr-2016 14:04:37 [info]  ���*2010:03:05 08:51:142010:03:05 08:51:14R980100 N���W���&(ydX
19-Apr-2016 14:04:37  ���d���3WGS-84ASCIIHYBRID-FIX2010:03:05���H������������C                
19-Apr-2016 14:04:37 [info] 
19-Apr-2016 14:04:37  $.' ",#(7),01444'9=82<.342������C                         
19-Apr-2016 14:04:37
19-Apr-2016 14:04:37 2!!22222222222222222222222222222222222222222222222222������uY!������        
19-Apr-2016 14:04:37 [info] ���������}!1AQa"q2���������#B������R������$3br���        
19-Apr-2016 14:04:37 [info] %&'()*456789:CDEFGHIJSTUVWXYZcdefghijstuvwxyz���������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������        
19-Apr-2016 14:04:37 [info] ���������w!1AQaq"2���B������������        #3R���br���
19-Apr-2016 14:04:37 [info] $4���%���&'()*56789:CDEFGHIJSTUVWXYZcdefghijstuvwxyz������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������������ ?������������D^������g���8E���N���P!���������}������jx�����������S���>��p���zS>��������lF"������������*������>���������0���������<C@
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19-Apr-2016 14:04:37 [info] Cms������k�����,*���������c���:ct���_��������������V���d������d5���u;������I���J��������������Z���������Uj���[O ������������\���XHN������2������=���wV���������������������������+?i���t&49���������������������������<_~!{���������e������ ���_\7.]������B���nVb���c���������������E��� ���e���������������H-���nUCgqt���y������A���`���������#���(������h������Uy������y���������Gs�����.IX������������J��������������������wo���<o���"���������$|s���m������$r���{������������"���07���e$���~���}������"tMV���~3��2���������
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19-Apr-2016 14:04:37 [info] ���$Fn���h��}������c������������������S{\���������/���~$xz/���cY����������������)�����z��������������_p:zQEg.������cJ;���[) 1T1������s���0j#[���v���m���a1R������t���<s���:c���z(�����������������^{������������>G�����������Ok}�����������������'���������(������K)��������������e������r������#���>���[���b������������������������W,���OC9h������
19-Apr-2016 14:04:37 [info] 0
19-Apr-2016 14:04:37 [info]
19-Apr-2016 14:04:37 [info] 
19-Apr-2016 14:04:37 [info] - must respond to the uploadMetadata(id: UUID) and getMetadata(id: UUID) function routed by POST/GET /api/previews/:id/metadata
19-Apr-2016 14:04:37 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/test/data/previews/data-test-general.json
19-Apr-2016 14:04:37 [info]   + Pretty JSON format
19-Apr-2016 14:04:37 [info]   + {
19-Apr-2016 14:04:37 [info]   "Image" : "fid",
19-Apr-2016 14:04:37 [info]   "extractor_id" : "test-extractor"
19-Apr-2016 14:04:37 [info] }
19-Apr-2016 14:04:37 [info]   + Status_Post=200
19-Apr-2016 14:04:37 [info]   + contentType_Post=Some(application/json)
19-Apr-2016 14:04:37 [info] - must respond to the attachPreview(file_id:UUID, preview:UUID) function routed by POST /api/files/:file_id/previews/:p_id 
19-Apr-2016 14:04:37 [info]   + Status_Post=200
19-Apr-2016 14:04:37 [info]   + contentType_Post=Some(application/json)
19-Apr-2016 14:04:37 [info]   + Pretty JSON format
19-Apr-2016 14:04:37 [info]   + {
19-Apr-2016 14:04:37 [info]   "status" : "success"
19-Apr-2016 14:04:37 [info] }
19-Apr-2016 14:04:37 [info] - must respond to the filePreviewsList(id: UUID) function routed by GET /api/files/:file_id/listpreviews
19-Apr-2016 14:04:37 [info]   + Status_get=200
19-Apr-2016 14:04:37 [info]   + contentType_get=Some(application/json)
19-Apr-2016 14:04:37 [info]   + Pretty JSON format
19-Apr-2016 14:04:37 [info]   + [ {
19-Apr-2016 14:04:37 [info]   "id" : "5716814560b23dd83442a415",
19-Apr-2016 14:04:37 [info]   "filename" : "morrowplots-preview.jpg",
19-Apr-2016 14:04:37 [info]   "contentType" : "image/jpeg"
19-Apr-2016 14:04:37 [info] } ]
19-Apr-2016 14:04:37 [info] - must respond to the getPreviews(id: UUID) function routed by GET /api/files/:file_id/getPreviews
19-Apr-2016 14:04:37 [info]   + Status_Get=200
19-Apr-2016 14:04:37 [info]   + contentType_Get=Some(application/json)
19-Apr-2016 14:04:37 [info]   + Pretty JSON format
19-Apr-2016 14:04:37 [info]   + [ {
19-Apr-2016 14:04:37 [info]   "file_id" : "5716814560b23dd83442a410",
19-Apr-2016 14:04:37 [info]   "previews" : [ {
19-Apr-2016 14:04:37 [info]     "pv_route" : "/api/previews/5716814560b23dd83442a415",
19-Apr-2016 14:04:37 [info]     "p_main" : "thumbnail-previewer.js",
19-Apr-2016 14:04:37 [info]     "pv_id" : "5716814560b23dd83442a415",
19-Apr-2016 14:04:37 [info]     "p_path" : "/assets/javascripts/previewers/thumbnail",
19-Apr-2016 14:04:37 [info]     "p_id" : "Thumbnail",
19-Apr-2016 14:04:37 [info]     "pv_length" : "9757",
19-Apr-2016 14:04:37 [info]     "pv_contenttype" : "image/jpeg"
19-Apr-2016 14:04:37 [info]   } ]
19-Apr-2016 14:04:37 [info] } ]
19-Apr-2016 14:04:37 [info] - must respond to the list() function routed by GET /api/previews
19-Apr-2016 14:04:37 [info]   + Status=200
19-Apr-2016 14:04:37 [info]   + contentType=Some(application/json)
19-Apr-2016 14:04:37 [info]   + content[{"id":"5716814560b23dd83442a415","filename":"morrowplots-preview.jpg","contentType":"image/jpeg"}]
19-Apr-2016 14:04:37 [info] - must respond to the removePreview(id:UUID) function routed by DELETE /api/previews/:id for morrowplots preview file
19-Apr-2016 14:04:37 [info]   + Status_Get=200
19-Apr-2016 14:04:37 [info]   + contentType_Get=Some(application/json)
19-Apr-2016 14:04:37 [info]   + Pretty JSON format
19-Apr-2016 14:04:37 [info]   + {
19-Apr-2016 14:04:37 [info]   "status" : "success"
19-Apr-2016 14:04:37 [info] }
19-Apr-2016 14:04:37 2016-04-19 14:04:37,799 - [DEBUG  ] - application - Deleting file from indexesmorrowplots.jpg
19-Apr-2016 14:04:37 2016-04-19 14:04:37,799 - [DEBUG  ] - application - Deleting file: morrowplots.jpg
19-Apr-2016 14:04:37 [info] - must respond to the removeFile(id:UUID) function routed by DELETE /api/files/:id 
19-Apr-2016 14:04:37 [info]   + Status_Get=200
19-Apr-2016 14:04:37 [info]   + contentType_Get=Some(application/json)
19-Apr-2016 14:04:37 [info]   + Pretty JSON format
19-Apr-2016 14:04:37 [info]   + {
19-Apr-2016 14:04:37 [info]   "status" : "success"
19-Apr-2016 14:04:37 [info] }
19-Apr-2016 14:04:37 [info] ApplicationSpec:
19-Apr-2016 14:04:37 [info] The Application API Spec
19-Apr-2016 14:04:37 [info] - must provide a FakeApplication
19-Apr-2016 14:04:37 [info] - must make the FakeApplication available implicitly
19-Apr-2016 14:04:37 [info] - must start the FakeApplication
19-Apr-2016 14:04:37 [info] - must send 404 on a bad request
19-Apr-2016 14:04:37 2016-04-19 14:04:37,863 - [DEBUG  ] - application - Getting value for display.name
19-Apr-2016 14:04:37 2016-04-19 14:04:37,864 - [DEBUG  ] - application - Getting value for welcome.message
19-Apr-2016 14:04:37 2016-04-19 14:04:37,874 - [DEBUG  ] - application - Getting value for theme
19-Apr-2016 14:04:38 2016-04-19 14:04:38,181 - [DEBUG  ] - application - Getting value for display.name
19-Apr-2016 14:04:38 2016-04-19 14:04:38,194 - [DEBUG  ] - application - [securesocial] bootstrap path = securesocial/bootstrap/css/bootstrap.min.css
19-Apr-2016 14:04:38 2016-04-19 14:04:38,202 - [DEBUG  ] - application - [securesocial] assets controller = controllers.ReverseAssets
19-Apr-2016 14:04:38 2016-04-19 14:04:38,203 - [DEBUG  ] - application - [securesocial] favicon path = securesocial/images/favicon.png
19-Apr-2016 14:04:38 2016-04-19 14:04:38,203 - [DEBUG  ] - application - [securesocial] Jquery path = securesocial/javascripts/jquery-1.7.1.min.js
19-Apr-2016 14:04:38 2016-04-19 14:04:38,203 - [DEBUG  ] - application - [securesocial] custom css path = None
19-Apr-2016 14:04:38 2016-04-19 14:04:38,206 - [DEBUG  ] - application - Getting value for google.analytics
19-Apr-2016 14:04:38 [info] - must render the index page
19-Apr-2016 14:04:38 2016-04-19 14:04:38,218 - [DEBUG  ] - application - Getting value for theme
19-Apr-2016 14:04:38 2016-04-19 14:04:38,666 - [DEBUG  ] - application - Getting value for display.name
19-Apr-2016 14:04:38 2016-04-19 14:04:38,667 - [DEBUG  ] - application - Getting value for google.analytics
19-Apr-2016 14:04:38 [info] - must render index template
19-Apr-2016 14:04:38 2016-04-19 14:04:38,670 - [INFO   ] - application - Staging Area Plugin has stopped
19-Apr-2016 14:04:38 2016-04-19 14:04:38,671 - [INFO   ] - application - [securesocial] unloaded event listener SecureSocialEventListener
19-Apr-2016 14:04:38 2016-04-19 14:04:38,672 - [INFO   ] - application - [securesocial] unloaded identity provider: userpass
19-Apr-2016 14:04:38 2016-04-19 14:04:38,672 - [INFO   ] - application - Application shutdown
19-Apr-2016 14:04:38 2016-04-19 14:04:38,672 - [INFO   ] - application - [securesocial] unloaded password hasher bcrypt
19-Apr-2016 14:04:38 2016-04-19 14:04:38,676 - [INFO   ] - play - Shutdown application default Akka system.
19-Apr-2016 14:04:38 2016-04-19 14:04:38,708 - [DEBUG  ] - application - SwaggerPlugin.onStop
19-Apr-2016 14:04:38 [info] ScalaTest
19-Apr-2016 14:04:38 [info] Run completed in 17 seconds, 360 milliseconds.
19-Apr-2016 14:04:38 [info] Total number of tests run: 83
19-Apr-2016 14:04:38 [info] Suites: completed 7, aborted 0
19-Apr-2016 14:04:38 [info] Tests: succeeded 83, failed 0, canceled 0, ignored 0, pending 0
19-Apr-2016 14:04:38 [info] All tests passed.
19-Apr-2016 14:04:38 [info] Passed: Total 6, Failed 0, Errors 0, Passed 6
19-Apr-2016 14:04:38 [success] Total time: 55 s, completed Apr 19, 2016 2:04:38 PM
19-Apr-2016 14:04:38 Finished task 'test' with result: Success
19-Apr-2016 14:04:38
Substituting variable: ${bamboo.buildNumber} with 2
19-Apr-2016 14:04:38 Starting task 'doc' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
19-Apr-2016 14:04:38
Beginning to execute external process for build 'Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and - default #2 (CATS-CORE452-JOB1-2)'
... running command line:
/home/bamboo/sbt-0.13.2/bin/sbt doc
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_revision_number=47779b189b7a510b5c22836c07cdd1fe5efc8fc2
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE452-JOB1-2
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_15=/bin/sh /tmp/CATS-CORE452-JOB1-2-ScriptBuildTask-1875633033888471638.sh
JAVA_OPTS=-Dbamboo.buildNumber=2
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_11=/home/bamboo/sbt-0.13.2/bin/sbt clean update
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=clowder
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
bamboo_buildKey=CATS-CORE452-JOB1
bamboo_capability_system_os=linux
bamboo_shortPlanName=bugfix-SEAD-991-staging-area-select-repository-and
bamboo_planRepository_name=clowder
bamboo_repository_113377311_previous_revision_number=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_buildNumber=2
bamboo_shortJobName=default
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE452-JOB1-2
bamboo_repository_113377311_name=clowder
bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_repository_113377311_git_username=
bamboo_agentId=108560385
bamboo_planName=Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and
bamboo_shortPlanKey=CORE452
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_repository_113377311_branch_name=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_planRepository_revision=47779b189b7a510b5c22836c07cdd1fe5efc8fc2
bamboo_repository_previous_revision_number=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_buildTimeStamp=2016-04-19T13:55:54.179-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_planRepository_previousRevision=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=CATS-CORE452-JOB1-2
bamboo_repository_git_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_repository_branch_name=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_buildPlanName=Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and - default
bamboo_planRepository_1_revision=47779b189b7a510b5c22836c07cdd1fe5efc8fc2
bamboo_repository_name=clowder
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_repository_113377311_revision_number=47779b189b7a510b5c22836c07cdd1fe5efc8fc2
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_planRepository_1_previousRevision=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_repository_git_username=
bamboo_repository_113377311_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=stash-rep
bamboo_planRepository_branchName=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_hostname=buildserver-1
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_type=stash-rep
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_7=/home/bamboo/sbt-0.13.2/bin/sbt compile
bamboo_capability_system_builder_ant_Ant=/usr/share/ant
bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_8=/home/bamboo/sbt-0.13.2/bin/sbt test-only integration.APITestSuite
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
bamboo_planKey=CATS-CORE452
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_repository_113377311_git_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/SEAD-991-staging-area-select-repository-and
19-Apr-2016 14:04:38 Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0
19-Apr-2016 14:04:41 [info] Loading project definition from /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/project
19-Apr-2016 14:04:43 [info] Set current project to clowder (in build file:/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/)
19-Apr-2016 14:04:44 [info] Main Scala API documentation to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/api...
19-Apr-2016 14:05:11 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/Global.scala:48: postfix operator minutes should be enabled
19-Apr-2016 14:05:11 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:11 [warn] This can be achieved by adding the import clause 'import scala.language.postfixOps'
19-Apr-2016 14:05:11 [warn] or by setting the compiler option -language:postfixOps.
19-Apr-2016 14:05:11 [warn] See the Scala docs for value scala.language.postfixOps for a discussion
19-Apr-2016 14:05:11 [warn] why the feature should be explicitly enabled.
19-Apr-2016 14:05:11 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
19-Apr-2016 14:05:11 [warn]                                                           ^
19-Apr-2016 14:05:11 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/Global.scala:48: postfix operator minutes should be enabled
19-Apr-2016 14:05:11 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:11 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
19-Apr-2016 14:05:11 [warn]                                                                      ^
19-Apr-2016 14:05:11 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/Global.scala:55: postfix operator minutes should be enabled
19-Apr-2016 14:05:11 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:11 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
19-Apr-2016 14:05:11 [warn]                                                     ^
19-Apr-2016 14:05:11 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/Global.scala:55: postfix operator minutes should be enabled
19-Apr-2016 14:05:11 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:11 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
19-Apr-2016 14:05:11 [warn]                                                                ^
19-Apr-2016 14:05:12 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Admin.scala:153: postfix operator seconds should be enabled
19-Apr-2016 14:05:12 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:12 [warn]     Akka.system.scheduler.scheduleOnce(1 seconds) {
19-Apr-2016 14:05:12 [warn]                                          ^
19-Apr-2016 14:05:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Collections.scala:535: a pure expression does nothing in statement position; you may be omitting necessary parentheses
19-Apr-2016 14:05:13 [warn]           return true
19-Apr-2016 14:05:13 [warn]                  ^
19-Apr-2016 14:05:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Collections.scala:535: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
19-Apr-2016 14:05:13 [warn]           return true
19-Apr-2016 14:05:13 [warn]           ^
19-Apr-2016 14:05:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Collections.scala:537: a pure expression does nothing in statement position; you may be omitting necessary parentheses
19-Apr-2016 14:05:13 [warn]           return false
19-Apr-2016 14:05:13 [warn]                  ^
19-Apr-2016 14:05:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Collections.scala:537: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
19-Apr-2016 14:05:13 [warn]           return false
19-Apr-2016 14:05:13 [warn]           ^
19-Apr-2016 14:05:15 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/CurationObjects.scala:126: postfix operator toList should be enabled
19-Apr-2016 14:05:15 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:15 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
19-Apr-2016 14:05:15 [warn]                                                                                                                                ^
19-Apr-2016 14:05:17 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Files.scala:23: imported `Files' is permanently hidden by definition of class Files in package api
19-Apr-2016 14:05:17 [warn] import play.api.libs.Files
19-Apr-2016 14:05:17 [warn]                      ^
19-Apr-2016 14:05:18 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Files.scala:796: @deprecated now takes two arguments; see the scaladoc.
19-Apr-2016 14:05:18 [warn]   @deprecated
19-Apr-2016 14:05:18 [warn]    ^
19-Apr-2016 14:05:21 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Geostreams.scala:43: postfix operator tupled should be enabled
19-Apr-2016 14:05:21 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:21 [warn]   ) tupled
19-Apr-2016 14:05:21 [warn]     ^
19-Apr-2016 14:05:21 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Geostreams.scala:51: postfix operator tupled should be enabled
19-Apr-2016 14:05:21 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:21 [warn]   ) tupled
19-Apr-2016 14:05:21 [warn]     ^
19-Apr-2016 14:05:21 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/api/Geostreams.scala:60: postfix operator tupled should be enabled
19-Apr-2016 14:05:21 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:21 [warn]   ) tupled
19-Apr-2016 14:05:21 [warn]     ^
19-Apr-2016 14:05:21 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBInstitutionService.scala:3: imported `Institution' is permanently hidden by definition of object Institution in package mongodb
19-Apr-2016 14:05:21 [warn] import models.Institution
19-Apr-2016 14:05:21 [warn]               ^
19-Apr-2016 14:05:22 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBProjectService.scala:3: imported `Project' is permanently hidden by definition of object Project in package mongodb
19-Apr-2016 14:05:22 [warn] import models.Project
19-Apr-2016 14:05:22 [warn]               ^
19-Apr-2016 14:05:25 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/controllers/CurationObjects.scala:344: postfix operator toList should be enabled
19-Apr-2016 14:05:25 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:25 [warn]       metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
19-Apr-2016 14:05:25 [warn]                                                                                                                          ^
19-Apr-2016 14:05:25 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/controllers/CurationObjects.scala:561: postfix operator toList should be enabled
19-Apr-2016 14:05:25 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:25 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
19-Apr-2016 14:05:25 [warn]                                                                                                                                ^
19-Apr-2016 14:05:27 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/controllers/Registration.scala:13: imported `Registration' is permanently hidden by definition of class Registration in package controllers
19-Apr-2016 14:05:27 [warn] import securesocial.controllers.{ProviderController, Registration, TemplatesPlugin}
19-Apr-2016 14:05:27 [warn]                                                      ^
19-Apr-2016 14:05:27 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/controllers/Registration.scala:57: reflective access of structural type member value currentHasher should be enabled
19-Apr-2016 14:05:27 [warn] by making the implicit value scala.language.reflectiveCalls visible.
19-Apr-2016 14:05:27 [warn] This can be achieved by adding the import clause 'import scala.language.reflectiveCalls'
19-Apr-2016 14:05:27 [warn] or by setting the compiler option -language:reflectiveCalls.
19-Apr-2016 14:05:27 [warn] See the Scala docs for value scala.language.reflectiveCalls for a discussion
19-Apr-2016 14:05:27 [warn] why the feature should be explicitly enabled.
19-Apr-2016 14:05:27 [warn]                 passwordInfo = Some(Registry.hashers.currentHasher.hash(info.password))
19-Apr-2016 14:05:27 [warn]                                                      ^
19-Apr-2016 14:05:29 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/models/UUID.scala:36: implicit conversion method stringToUUID should be enabled
19-Apr-2016 14:05:29 [warn] by making the implicit value scala.language.implicitConversions visible.
19-Apr-2016 14:05:29 [warn] This can be achieved by adding the import clause 'import scala.language.implicitConversions'
19-Apr-2016 14:05:29 [warn] or by setting the compiler option -language:implicitConversions.
19-Apr-2016 14:05:29 [warn] See the Scala docs for value scala.language.implicitConversions for a discussion
19-Apr-2016 14:05:29 [warn] why the feature should be explicitly enabled.
19-Apr-2016 14:05:29 [warn]   implicit def stringToUUID(s: String) = UUID(s)
19-Apr-2016 14:05:29 [warn]                ^
19-Apr-2016 14:05:29 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/models/UUID.scala:37: implicit conversion method uuidToObjectId should be enabled
19-Apr-2016 14:05:29 [warn] by making the implicit value scala.language.implicitConversions visible.
19-Apr-2016 14:05:29 [warn]   implicit def uuidToObjectId(uuid: UUID) = new ObjectId(uuid.stringify)
19-Apr-2016 14:05:29 [warn]                ^
19-Apr-2016 14:05:29 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/models/UUID.scala:38: implicit conversion method objectIdToUUID should be enabled
19-Apr-2016 14:05:29 [warn] by making the implicit value scala.language.implicitConversions visible.
19-Apr-2016 14:05:29 [warn]   implicit def objectIdToUUID(objectId: ObjectId) = UUID(objectId.toString)
19-Apr-2016 14:05:29 [warn]                ^
19-Apr-2016 14:05:30 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/models/User.scala:75: implicit conversion method userToMiniUser should be enabled
19-Apr-2016 14:05:30 [warn] by making the implicit value scala.language.implicitConversions visible.
19-Apr-2016 14:05:30 [warn]   implicit def userToMiniUser(x: User): MiniUser = x.getMiniUser
19-Apr-2016 14:05:30 [warn]                ^
19-Apr-2016 14:05:30 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/PolyglotPlugin.scala:83: postfix operator seconds should be enabled
19-Apr-2016 14:05:30 [warn] by making the implicit value scala.language.postfixOps visible.
19-Apr-2016 14:05:30 [warn]           akka.pattern.after(3 seconds, using = Akka.system.scheduler)(checkForFileAndDownload((triesLeft - 1), url, outputStream))
19-Apr-2016 14:05:30 [warn]                                ^
19-Apr-2016 14:05:31 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoContext.scala:253: implicit conversion method dbObjectToString should be enabled
19-Apr-2016 14:05:31 [warn] by making the implicit value scala.language.implicitConversions visible.
19-Apr-2016 14:05:31 [warn]   implicit def dbObjectToString(dbObject: DBObject): String = {
19-Apr-2016 14:05:31 [warn]                ^
19-Apr-2016 14:05:32 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBCollectionService.scala:11: imported `Collection' is permanently hidden by definition of object Collection in package mongodb
19-Apr-2016 14:05:32 [warn] import models.{User, UUID, Collection, Dataset}
19-Apr-2016 14:05:32 [warn]                            ^
19-Apr-2016 14:05:32 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBCollectionService.scala:11: imported `Dataset' is permanently hidden by definition of object Dataset in package mongodb
19-Apr-2016 14:05:32 [warn] import models.{User, UUID, Collection, Dataset}
19-Apr-2016 14:05:32 [warn]                                        ^
19-Apr-2016 14:05:32 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBCommentService.scala:3: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
19-Apr-2016 14:05:32 [warn] import models.{UUID, Comment}
19-Apr-2016 14:05:32 [warn]                      ^
19-Apr-2016 14:05:35 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBTagService.scala:7: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
19-Apr-2016 14:05:35 [warn] import models.{Tag, UUID}
19-Apr-2016 14:05:35 [warn]                ^
19-Apr-2016 14:05:35 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBExtractionRequestsService.scala:20: imported `MongoSalatPlugin' is permanently hidden by definition of class MongoSalatPlugin in package mongodb
19-Apr-2016 14:05:35 [warn] import services.mongodb.MongoSalatPlugin
19-Apr-2016 14:05:35 [warn]                         ^
19-Apr-2016 14:05:35 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBExtractionService.scala:4: imported `Extraction' is permanently hidden by definition of object Extraction in package mongodb
19-Apr-2016 14:05:35 [warn] import models.{UUID, Extraction}
19-Apr-2016 14:05:35 [warn]                      ^
19-Apr-2016 14:05:35 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBExtractionService.scala:13: imported `WebPageResource' is permanently hidden by definition of object WebPageResource in package mongodb
19-Apr-2016 14:05:35 [warn] import models.WebPageResource
19-Apr-2016 14:05:35 [warn]               ^
19-Apr-2016 14:05:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBSectionService.scala:4: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
19-Apr-2016 14:05:37 [warn] import models.{UUID, Tag, Comment, Section}
19-Apr-2016 14:05:37 [warn]                      ^
19-Apr-2016 14:05:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBSectionService.scala:4: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
19-Apr-2016 14:05:37 [warn] import models.{UUID, Tag, Comment, Section}
19-Apr-2016 14:05:37 [warn]                           ^
19-Apr-2016 14:05:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBSpaceService.scala:24: imported `Collection' is permanently hidden by definition of object Collection in package mongodb
19-Apr-2016 14:05:37 [warn] import models.Collection
19-Apr-2016 14:05:37 [warn]               ^
19-Apr-2016 14:05:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/mongodb/MongoDBSpaceService.scala:25: imported `Dataset' is permanently hidden by definition of object Dataset in package mongodb
19-Apr-2016 14:05:37 [warn] import models.Dataset
19-Apr-2016 14:05:37 [warn]               ^
19-Apr-2016 14:05:53 model contains 796 documentable templates
19-Apr-2016 14:05:58 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/app/services/irods/IRODSPlugin.scala:9: Tag '@date' is not recognised
19-Apr-2016 14:05:58 [warn] /**
19-Apr-2016 14:05:58 [warn] ^
19-Apr-2016 14:06:11 [warn] 39 warnings found
19-Apr-2016 14:06:11 [info] Main Scala API documentation successful.
19-Apr-2016 14:06:11 [success] Total time: 87 s, completed Apr 19, 2016 2:06:11 PM
19-Apr-2016 14:06:11 Finished task 'doc' with result: Success
19-Apr-2016 14:06:11
Substituting variable: ${bamboo.buildNumber} with 2
19-Apr-2016 14:06:11 Starting task 'dist' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
19-Apr-2016 14:06:11
Beginning to execute external process for build 'Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and - default #2 (CATS-CORE452-JOB1-2)'
... running command line:
/home/bamboo/sbt-0.13.2/bin/sbt dist
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
... using extra environment variables:
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bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_revision_number=47779b189b7a510b5c22836c07cdd1fe5efc8fc2
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE452-JOB1-2
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_15=/bin/sh /tmp/CATS-CORE452-JOB1-2-ScriptBuildTask-1875633033888471638.sh
JAVA_OPTS=-Dbamboo.buildNumber=2
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_11=/home/bamboo/sbt-0.13.2/bin/sbt clean update
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=clowder
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
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bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_repository_113377311_branch_name=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_planRepository_revision=47779b189b7a510b5c22836c07cdd1fe5efc8fc2
bamboo_repository_previous_revision_number=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_buildTimeStamp=2016-04-19T13:55:54.179-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_planRepository_previousRevision=73ed024448334c22e98797c3ee8953f3d834dcbf
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bamboo_planRepository_1_revision=47779b189b7a510b5c22836c07cdd1fe5efc8fc2
bamboo_repository_name=clowder
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bamboo_repository_113377311_revision_number=47779b189b7a510b5c22836c07cdd1fe5efc8fc2
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bamboo_planRepository_1_previousRevision=73ed024448334c22e98797c3ee8953f3d834dcbf
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bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_9=/home/bamboo/sbt-0.13.2/bin/sbt doc
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_8=/home/bamboo/sbt-0.13.2/bin/sbt test-only integration.APITestSuite
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
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19-Apr-2016 14:06:11 Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0
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19-Apr-2016 14:06:16 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/clowder_2.10-0.9.2-SNAPSHOT-sources.jar ...
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19-Apr-2016 14:06:17 [info] Wrote /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/clowder_2.10-0.9.2-SNAPSHOT.pom
19-Apr-2016 14:06:18 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/clowder_2.10-0.9.2-SNAPSHOT-javadoc.jar ...
19-Apr-2016 14:06:19 [info] Done packaging.
19-Apr-2016 14:06:19 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/scala-2.10/clowder_2.10-0.9.2-SNAPSHOT.jar ...
19-Apr-2016 14:06:22 [info] Done packaging.
19-Apr-2016 14:06:31 [info]
19-Apr-2016 14:06:31 [info] Your package is ready in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/target/universal/clowder-0.9.2-SNAPSHOT.zip
19-Apr-2016 14:06:31 [info]
19-Apr-2016 14:06:31 [success] Total time: 15 s, completed Apr 19, 2016 2:06:31 PM
19-Apr-2016 14:06:31 Finished task 'dist' with result: Success
19-Apr-2016 14:06:31 Starting task 'sphinx' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
19-Apr-2016 14:06:31
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19-Apr-2016 14:06:33 Making output directory...
19-Apr-2016 14:06:33 Running Sphinx v1.2.2
19-Apr-2016 14:06:33 loading pickled environment... not yet created
19-Apr-2016 14:06:33 building [html]: targets for 12 source files that are out of date
19-Apr-2016 14:06:33 updating environment: 12 added, 0 changed, 0 removed
19-Apr-2016 14:06:33 reading sources... [  8%] api
19-Apr-2016 14:06:34 reading sources... [ 16%] architecture
19-Apr-2016 14:06:34 reading sources... [ 25%] extractors
19-Apr-2016 14:06:34 reading sources... [ 33%] index
19-Apr-2016 14:06:34 reading sources... [ 41%] installation
19-Apr-2016 14:06:34 reading sources... [ 50%] license
19-Apr-2016 14:06:34 reading sources... [ 58%] overview
19-Apr-2016 14:06:34 reading sources... [ 66%] previewers
19-Apr-2016 14:06:34 reading sources... [ 75%] setup
19-Apr-2016 14:06:34 reading sources... [ 83%] setup_dev
19-Apr-2016 14:06:34 reading sources... [ 91%] source
19-Apr-2016 14:06:34 reading sources... [100%] thankyou
19-Apr-2016 14:06:34
19-Apr-2016 14:06:34 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/license.rst:10: WARNING: Title underline too short.
19-Apr-2016 14:06:34
19-Apr-2016 14:06:34 Contributors
19-Apr-2016 14:06:34 -------
19-Apr-2016 14:06:34 looking for now-outdated files... none found
19-Apr-2016 14:06:34 pickling environment... done
19-Apr-2016 14:06:34 checking consistency... done
19-Apr-2016 14:06:34 preparing documents... done
19-Apr-2016 14:06:34 writing output... [  8%] api
19-Apr-2016 14:06:34 writing output... [ 16%] architecture
19-Apr-2016 14:06:34 writing output... [ 25%] extractors
19-Apr-2016 14:06:34 writing output... [ 33%] index
19-Apr-2016 14:06:34 writing output... [ 41%] installation
19-Apr-2016 14:06:34 writing output... [ 50%] license
19-Apr-2016 14:06:34 writing output... [ 58%] overview
19-Apr-2016 14:06:34 writing output... [ 66%] previewers
19-Apr-2016 14:06:34 writing output... [ 75%] setup
19-Apr-2016 14:06:34 writing output... [ 83%] setup_dev
19-Apr-2016 14:06:34 writing output... [ 91%] source
19-Apr-2016 14:06:35 writing output... [100%] thankyou
19-Apr-2016 14:06:35
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
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19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
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19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
19-Apr-2016 14:06:35 writing additional files... genindex search
19-Apr-2016 14:06:35 copying images... [ 20%] _static/dataset.png
19-Apr-2016 14:06:35 copying images... [ 40%] _static/data-model.jpg
19-Apr-2016 14:06:35 copying images... [ 60%] _static/extraction.jpg
19-Apr-2016 14:06:35 copying images... [ 80%] _static/architecture.jpg
19-Apr-2016 14:06:35 copying images... [100%] _static/logo_full.png
19-Apr-2016 14:06:35
19-Apr-2016 14:06:35 copying static files... done
19-Apr-2016 14:06:35 copying extra files... done
19-Apr-2016 14:06:35 dumping search index... done
19-Apr-2016 14:06:35 dumping object inventory... done
19-Apr-2016 14:06:35 build succeeded, 31 warnings.
19-Apr-2016 14:06:35 Finished task 'sphinx' with result: Success
19-Apr-2016 14:06:35 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
19-Apr-2016 14:06:35
Beginning to execute external process for build 'Clowder - CORE - bugfix-SEAD-991-staging-area-select-repository-and - default #2 (CATS-CORE452-JOB1-2)'
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bamboo_repository_113377311_revision_number=47779b189b7a510b5c22836c07cdd1fe5efc8fc2
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_planRepository_1_previousRevision=73ed024448334c22e98797c3ee8953f3d834dcbf
bamboo_repository_git_username=
bamboo_repository_113377311_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=stash-rep
bamboo_planRepository_branchName=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_hostname=buildserver-1
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_type=stash-rep
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_7=/home/bamboo/sbt-0.13.2/bin/sbt compile
bamboo_capability_system_builder_ant_Ant=/usr/share/ant
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_9=/home/bamboo/sbt-0.13.2/bin/sbt doc
bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_8=/home/bamboo/sbt-0.13.2/bin/sbt test-only integration.APITestSuite
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1
bamboo_planKey=CATS-CORE452
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_repository_113377311_git_branch=bugfix/SEAD-991-staging-area-select-repository-and
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/SEAD-991-staging-area-select-repository-and
19-Apr-2016 14:06:37 Sending build context to Docker daemon 557.1 kB
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19-Apr-2016 14:06:41
19-Apr-2016 14:06:41 Step 1 : FROM java:8-jre
19-Apr-2016 14:06:42 8-jre: Pulling from library/java
19-Apr-2016 14:06:42 efd26ecc9548: Already exists
19-Apr-2016 14:06:42 a3ed95caeb02: Already exists
19-Apr-2016 14:06:42 d1784d73276e: Already exists
19-Apr-2016 14:06:42 52a884c93bb2: Already exists
19-Apr-2016 14:06:42 070ee56a6f7e: Already exists
19-Apr-2016 14:06:42 a3ed95caeb02: Already exists
19-Apr-2016 14:06:42 f8b8b1302b4f: Already exists
19-Apr-2016 14:06:42 a3ed95caeb02: Already exists
19-Apr-2016 14:06:42 a3ed95caeb02: Already exists
19-Apr-2016 14:06:42 a3ed95caeb02: Already exists
19-Apr-2016 14:06:42 a3ed95caeb02: Already exists
19-Apr-2016 14:06:42 e71221cc9598: Already exists
19-Apr-2016 14:06:42 349c9e35d503: Already exists
19-Apr-2016 14:06:42 Digest: sha256:59f5607caf2d84109e00f118d60bf803360ce73cdfd1c4bc1c420dee6d1ac18c
19-Apr-2016 14:06:42 Status: Image is up to date for java:8-jre
19-Apr-2016 14:06:42 ---> 570b0e0945fe
19-Apr-2016 14:06:42 Step 2 : MAINTAINER Rob Kooper <kooper@illinois.edu>
19-Apr-2016 14:06:42 ---> Using cache
19-Apr-2016 14:06:42 ---> 95c45c5aef92
19-Apr-2016 14:06:42 Step 3 : EXPOSE 9000
19-Apr-2016 14:06:42 ---> Using cache
19-Apr-2016 14:06:42 ---> 6c8126ddb258
19-Apr-2016 14:06:42 Step 4 : ENV CLOWDER_CONTEXT "/" CLOWDER_ADMINS "" MONGO_URI "" SMTP_HOST "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_URI "" RABBITMQ_MGMT_PORT "" ELASTICSEARCH_SERVICE_CLUSTERNAME "clowder" ELASTICSEARCH_SERVICE_SERVER "" ELASTICSEARCH_SERVICE_PORT "" TOOLMANAGER_URI ""
19-Apr-2016 14:06:42 ---> Using cache
19-Apr-2016 14:06:42 ---> 439a5dd52f1e
19-Apr-2016 14:06:42 Step 5 : RUN useradd -s /bin/bash clowder
19-Apr-2016 14:06:42 ---> Using cache
19-Apr-2016 14:06:42 ---> 33e708c50c4e
19-Apr-2016 14:06:42 Step 6 : COPY files entrypoint.sh /home/clowder/
19-Apr-2016 14:06:49 ---> a0731b7bff9b
19-Apr-2016 14:06:49 Removing intermediate container 87a8077cdcdb
19-Apr-2016 14:06:49 Step 7 : RUN chown -R clowder /home/clowder/clowder
19-Apr-2016 14:06:49 ---> Running in 0fc665215d85
19-Apr-2016 14:06:55 ---> d4c8fe1fc044
19-Apr-2016 14:06:55 Removing intermediate container 0fc665215d85
19-Apr-2016 14:06:55 Step 8 : ENTRYPOINT /home/clowder/entrypoint.sh
19-Apr-2016 14:06:55 ---> Running in 17f5ecd75211
19-Apr-2016 14:06:55 ---> c9dc10983769
19-Apr-2016 14:06:55 Removing intermediate container 17f5ecd75211
19-Apr-2016 14:06:55 Step 9 : CMD server
19-Apr-2016 14:06:55 ---> Running in 8cd16b41825f
19-Apr-2016 14:06:56 ---> 126b3c2e5622
19-Apr-2016 14:06:56 Removing intermediate container 8cd16b41825f
19-Apr-2016 14:06:56 Step 10 : USER clowder
19-Apr-2016 14:06:56 ---> Running in cb344ef8a03f
19-Apr-2016 14:06:56 ---> f2dc7b5f2b44
19-Apr-2016 14:06:56 Removing intermediate container cb344ef8a03f
19-Apr-2016 14:06:56 Successfully built f2dc7b5f2b44
19-Apr-2016 14:06:56 Sending build context to Docker daemon 22.02 kB
19-Apr-2016 14:06:56
19-Apr-2016 14:06:56 Step 1 : FROM ubuntu
19-Apr-2016 14:06:57 latest: Pulling from library/ubuntu
19-Apr-2016 14:06:57 759d6771041e: Already exists
19-Apr-2016 14:06:57 8836b825667b: Already exists
19-Apr-2016 14:06:57 c2f5e51744e6: Already exists
19-Apr-2016 14:06:57 a3ed95caeb02: Already exists
19-Apr-2016 14:06:57 Digest: sha256:b4dbab2d8029edddfe494f42183de20b7e2e871a424ff16ffe7b15a31f102536
19-Apr-2016 14:06:57 Status: Image is up to date for ubuntu:latest
19-Apr-2016 14:06:57 ---> b72889fa879c
19-Apr-2016 14:06:57 Step 2 : RUN apt-get -y update     && apt-get -y install curl unzip docker.io python python-dev python-pip     && pip install flask-restful     && pip install arrow     && apt-get clean all     && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*     ;
19-Apr-2016 14:06:57 ---> Using cache
19-Apr-2016 14:06:57 ---> d298e947370d
19-Apr-2016 14:06:57 Step 3 : COPY FILES.toolserver /
19-Apr-2016 14:06:57 ---> Using cache
19-Apr-2016 14:06:57 ---> 550f053d1798
19-Apr-2016 14:06:57 Step 4 : ENV TOOLSERVER_PORT 8082
19-Apr-2016 14:06:57 ---> Using cache
19-Apr-2016 14:06:57 ---> 50351e77cbcc
19-Apr-2016 14:06:57 Step 5 : CMD /usr/local/bin/usage
19-Apr-2016 14:06:57 ---> Using cache
19-Apr-2016 14:06:57 ---> a934dc96de29
19-Apr-2016 14:06:57 Successfully built a934dc96de29
19-Apr-2016 14:06:57 Tagged clowder toolserver with local
19-Apr-2016 14:06:57 Untagged: toolserver-13548:latest
19-Apr-2016 14:06:57 Untagged: clowder-13548:latest
19-Apr-2016 14:06:57 Finished task 'docker build' with result: Success
19-Apr-2016 14:06:57 Starting task 'junit' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
19-Apr-2016 14:06:57 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE452-JOB1...
19-Apr-2016 14:06:58 Finished task 'junit' with result: Success
19-Apr-2016 14:06:58 Running post build plugin 'Docker Container Cleanup'
19-Apr-2016 14:06:58 Running post build plugin 'NCover Results Collector'
19-Apr-2016 14:06:58 Running post build plugin 'Clover Results Collector'
19-Apr-2016 14:06:58 Running post build plugin 'npm Cache Cleanup'
19-Apr-2016 14:06:58 Running post build plugin 'Artifact Copier'
19-Apr-2016 14:06:58 Publishing an artifact: dist
19-Apr-2016 14:07:08 Finished publishing of artifact Shared artifact: [dist], pattern: [clowder-*.zip] anchored at: [target/universal] in 10s
19-Apr-2016 14:07:08 Publishing an artifact: scaladoc
19-Apr-2016 14:07:10 Finished publishing of artifact Shared artifact: [scaladoc], pattern: [**/*] anchored at: [target/scala-2.10/api] in 1s
19-Apr-2016 14:07:10 Publishing an artifact: manual
19-Apr-2016 14:07:11 Finished publishing of artifact Shared artifact: [manual], pattern: [**/*] anchored at: [doc/src/sphinx/_build/html] in 0s
19-Apr-2016 14:07:11 Finalising the build...
19-Apr-2016 14:07:11 Stopping timer.
19-Apr-2016 14:07:11 Build CATS-CORE452-JOB1-2 completed.
19-Apr-2016 14:07:11 Running on server: post build plugin 'NCover Results Collector'
19-Apr-2016 14:07:11 Running on server: post build plugin 'Build Hanging Detection Configuration'
19-Apr-2016 14:07:11 Running on server: post build plugin 'Clover Delta Calculator'
19-Apr-2016 14:07:11 Running on server: post build plugin 'Maven Dependencies Postprocessor'
19-Apr-2016 14:07:11 All post build plugins have finished
19-Apr-2016 14:07:11 Generating build results summary...
19-Apr-2016 14:07:11 Saving build results to disk...
19-Apr-2016 14:07:11 Logging substituted variables...
19-Apr-2016 14:07:11 Indexing build results...
19-Apr-2016 14:07:11 Finished building CATS-CORE452-JOB1-2.