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Job: default was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 2,634 lines of output.The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.

28-Sep-2016 18:33:40 2016-09-28 18:33:40,831 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:40 2016-09-28 18:33:40,832 - [DEBUG  ] - application - Creating new collection
28-Sep-2016 18:33:40 [info] - must respond to the createCollection() function routed by POST /api/collections for Collection 1
28-Sep-2016 18:33:40 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
28-Sep-2016 18:33:40 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/test/data/collections/data-test-collection.json
28-Sep-2016 18:33:40 [info]   + Pretty JSON format
28-Sep-2016 18:33:40 [info]   + {
28-Sep-2016 18:33:40 [info]   "description" : "Collection 1 Tests Description",
28-Sep-2016 18:33:40 [info]   "name" : "Collection 1 Test Suite",
28-Sep-2016 18:33:40 [info]   "space" : "default"
28-Sep-2016 18:33:40 [info] }
28-Sep-2016 18:33:40 [info]   + Status=200
28-Sep-2016 18:33:40 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:40 [info]   + content{"id":"57ec535460b2b19feba327ce"}
28-Sep-2016 18:33:40 2016-09-28 18:33:40,880 - [DEBUG  ] - application - File1 is File:True
28-Sep-2016 18:33:40 2016-09-28 18:33:40,886 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:40 2016-09-28 18:33:40,887 - [DEBUG  ] - application - Creating new collection
28-Sep-2016 18:33:40 [info] - must respond to the createCollection() function routed by POST /api/collections for Collection 2
28-Sep-2016 18:33:40 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
28-Sep-2016 18:33:40 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/test/data/collections/data-test-collection-1.json
28-Sep-2016 18:33:40 [info]   + Pretty JSON format
28-Sep-2016 18:33:40 [info]   + {
28-Sep-2016 18:33:40 [info]   "description" : "Collection 2 Tests Description",
28-Sep-2016 18:33:40 [info]   "name" : "Collection 2 Test Suite",
28-Sep-2016 18:33:40 [info]   "space" : "default"
28-Sep-2016 18:33:40 [info] }
28-Sep-2016 18:33:40 [info]   + Status=200
28-Sep-2016 18:33:40 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:40 [info]   + content{"id":"57ec535460b2b19feba327cf"}
28-Sep-2016 18:33:40 2016-09-28 18:33:40,897 - [DEBUG  ] - application - File1 is File:True
28-Sep-2016 18:33:41 2016-09-28 18:33:41,012 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,034 - [INFO   ] - application - created file 57ec535560b2b19feba327d1
28-Sep-2016 18:33:41 2016-09-28 18:33:41,034 - [DEBUG  ] - application - Uploading file dataset-image.zip
28-Sep-2016 18:33:41 2016-09-28 18:33:41,038 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,038 - [DEBUG  ] - application - --- API Creating new dataset ----
28-Sep-2016 18:33:41 2016-09-28 18:33:41,056 - [DEBUG  ] - application - ----- Adding file to dataset completed
28-Sep-2016 18:33:41 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 1 Creation
28-Sep-2016 18:33:41 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + contentAsString{"id":"57ec535560b2b19feba327d7"}
28-Sep-2016 18:33:41 2016-09-28 18:33:41,065 - [DEBUG  ] - application - File1 is File:True
28-Sep-2016 18:33:41 2016-09-28 18:33:41,198 - [INFO   ] - application - Uploading Completed
28-Sep-2016 18:33:41 2016-09-28 18:33:41,266 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,273 - [INFO   ] - application - created file 57ec535560b2b19feba327e9
28-Sep-2016 18:33:41 2016-09-28 18:33:41,273 - [DEBUG  ] - application - Uploading file dataset-image-1.zip
28-Sep-2016 18:33:41 2016-09-28 18:33:41,285 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,286 - [DEBUG  ] - application - --- API Creating new dataset ----
28-Sep-2016 18:33:41 2016-09-28 18:33:41,298 - [DEBUG  ] - application - ----- Adding file to dataset completed
28-Sep-2016 18:33:41 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 2 Creation
28-Sep-2016 18:33:41 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + contentAsString{"id":"57ec535560b2b19feba327f2"}
28-Sep-2016 18:33:41 2016-09-28 18:33:41,322 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,359 - [DEBUG  ] - application - Adding dataset 57ec535560b2b19feba327d7 to collection 57ec535460b2b19feba327ce
28-Sep-2016 18:33:41 2016-09-28 18:33:41,364 - [DEBUG  ] - application - retmd: { }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,364 - [DEBUG  ] - application - retmd: { }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,365 - [DEBUG  ] - application - retmd: [ ]
28-Sep-2016 18:33:41 2016-09-28 18:33:41,369 - [INFO   ] - application - Uploading Completed
28-Sep-2016 18:33:41 2016-09-28 18:33:41,380 - [DEBUG  ] - application - Adding dataset to collection completed
28-Sep-2016 18:33:41 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 1
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + contentAsString{"datasetsInCollection":1}
28-Sep-2016 18:33:41 2016-09-28 18:33:41,391 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 [info] - must respond to the listInCollection(coll_id: UUID) function routed by GET /api/collections/:coll_id/getDatasets
28-Sep-2016 18:33:41 [info]   + Status_Get=200
28-Sep-2016 18:33:41 [info]   + contentType_Get=Some(application/json)
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + [ {
28-Sep-2016 18:33:41 [info]   "id" : "57ec535560b2b19feba327d7",
28-Sep-2016 18:33:41 [info]   "name" : "Dataset 1 API Test Creation",
28-Sep-2016 18:33:41 [info]   "description" : "Part 1 of Dataset API Test Suite",
28-Sep-2016 18:33:41 [info]   "created" : "Wed Sep 28 18:33:41 CDT 2016",
28-Sep-2016 18:33:41 [info]   "thumbnail" : "None",
28-Sep-2016 18:33:41 [info]   "authorId" : "000000000000000000000000",
28-Sep-2016 18:33:41 [info]   "spaces" : [ ]
28-Sep-2016 18:33:41 [info] } ]
28-Sep-2016 18:33:41 2016-09-28 18:33:41,403 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 [info] - must respond to the listOutsideCollection(coll_id: UUID) function routed by GET /api/datasets/listOutsideCollection/:coll_id
28-Sep-2016 18:33:41 [info]   + Status_Get=200
28-Sep-2016 18:33:41 [info]   + contentType_Get=Some(application/json)
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + [ {
28-Sep-2016 18:33:41 [info]   "id" : "57ec535560b2b19feba327f2",
28-Sep-2016 18:33:41 [info]   "name" : "Dataset 2 API Test Creation",
28-Sep-2016 18:33:41 [info]   "description" : "Part 2 of Dataset API Test Suite",
28-Sep-2016 18:33:41 [info]   "created" : "Wed Sep 28 18:33:41 CDT 2016",
28-Sep-2016 18:33:41 [info]   "thumbnail" : "None",
28-Sep-2016 18:33:41 [info]   "authorId" : "000000000000000000000000",
28-Sep-2016 18:33:41 [info]   "spaces" : [ ]
28-Sep-2016 18:33:41 [info] }, {
28-Sep-2016 18:33:41 [info]   "id" : "57ec535560b2b19feba327d7",
28-Sep-2016 18:33:41 [info]   "name" : "Dataset 1 API Test Creation",
28-Sep-2016 18:33:41 [info]   "description" : "Part 1 of Dataset API Test Suite",
28-Sep-2016 18:33:41 [info]   "created" : "Wed Sep 28 18:33:41 CDT 2016",
28-Sep-2016 18:33:41 [info]   "thumbnail" : "None",
28-Sep-2016 18:33:41 [info]   "authorId" : "000000000000000000000000",
28-Sep-2016 18:33:41 [info]   "spaces" : [ ]
28-Sep-2016 18:33:41 [info] } ]
28-Sep-2016 18:33:41 2016-09-28 18:33:41,412 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,413 - [DEBUG  ] - application - Adding dataset 57ec535560b2b19feba327f2 to collection 57ec535460b2b19feba327ce
28-Sep-2016 18:33:41 2016-09-28 18:33:41,417 - [DEBUG  ] - application - retmd: { }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,417 - [DEBUG  ] - application - retmd: { }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,418 - [DEBUG  ] - application - retmd: [ ]
28-Sep-2016 18:33:41 2016-09-28 18:33:41,439 - [DEBUG  ] - application - Adding dataset to collection completed
28-Sep-2016 18:33:41 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 2
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + contentAsString{"datasetsInCollection":2}
28-Sep-2016 18:33:41 2016-09-28 18:33:41,453 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,455 - [DEBUG  ] - application - Removing dataset 57ec535560b2b19feba327f2 from collection 57ec535460b2b19feba327ce
28-Sep-2016 18:33:41 2016-09-28 18:33:41,459 - [DEBUG  ] - application - retmd: { }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,459 - [DEBUG  ] - application - retmd: { }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,460 - [DEBUG  ] - application - retmd: [ ]
28-Sep-2016 18:33:41 2016-09-28 18:33:41,468 - [INFO   ] - application - Removing dataset from collection completed
28-Sep-2016 18:33:41 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNotFound) function routed by DELETE /api/collections/:coll_id/datasets/:ds_id for dataset 2
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + contentAsString{"status":"success"}
28-Sep-2016 18:33:41 2016-09-28 18:33:41,483 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,484 - [DEBUG  ] - application - Removing dataset 57ec535560b2b19feba327d7 from collection 57ec535460b2b19feba327ce
28-Sep-2016 18:33:41 2016-09-28 18:33:41,487 - [DEBUG  ] - application - retmd: { }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,487 - [DEBUG  ] - application - retmd: { }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,488 - [DEBUG  ] - application - retmd: [ ]
28-Sep-2016 18:33:41 2016-09-28 18:33:41,490 - [INFO   ] - application - Removing dataset from collection completed
28-Sep-2016 18:33:41 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNoteFound) function routed by POST /api/collections/:coll_id/datasets/:ds_id/:ignoreNotFound for dataset 2
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + contentAsString{"status":"success"}
28-Sep-2016 18:33:41 2016-09-28 18:33:41,496 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,497 - [DEBUG  ] - application - userdfSPARQLStore not enabled
28-Sep-2016 18:33:41 2016-09-28 18:33:41,502 - [DEBUG  ] - application - Removing XML metadata belonging to file 57ec535560b2b19feba327d1 from dataset 57ec535560b2b19feba327d7.
28-Sep-2016 18:33:41 2016-09-28 18:33:41,506 - [ERROR  ] - application - File not found: 57ec535560b2b19feba327d1
28-Sep-2016 18:33:41 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 1
28-Sep-2016 18:33:41 [info]   + Status_Get=200
28-Sep-2016 18:33:41 [info]   + contentType_Get=Some(application/json)
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + {
28-Sep-2016 18:33:41 [info]   "status" : "success"
28-Sep-2016 18:33:41 [info] }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,511 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,512 - [DEBUG  ] - application - userdfSPARQLStore not enabled
28-Sep-2016 18:33:41 2016-09-28 18:33:41,517 - [DEBUG  ] - application - Removing XML metadata belonging to file 57ec535560b2b19feba327e9 from dataset 57ec535560b2b19feba327f2.
28-Sep-2016 18:33:41 2016-09-28 18:33:41,524 - [ERROR  ] - application - File not found: 57ec535560b2b19feba327e9
28-Sep-2016 18:33:41 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 2
28-Sep-2016 18:33:41 [info]   + Status_Get=200
28-Sep-2016 18:33:41 [info]   + contentType_Get=Some(application/json)
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + {
28-Sep-2016 18:33:41 [info]   "status" : "success"
28-Sep-2016 18:33:41 [info] }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,531 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 [info] - must respond to the listCollections() function routed by GET /api/collections
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + content[{"id":"57ec535460b2b19feba327cf","collectionname":"Collection 2 Test Suite","description":"Collection 2 Tests Description","created":"Wed Sep 28 18:33:40 CDT 2016","thumbnail":"None","authorId":"000000000000000000000000"},{"id":"57ec535460b2b19feba327ce","collectionname":"Collection 1 Test Suite","description":"Collection 1 Tests Description","created":"Wed Sep 28 18:33:40 CDT 2016","thumbnail":"None","authorId":"000000000000000000000000"}]
28-Sep-2016 18:33:41 2016-09-28 18:33:41,541 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 [info] - must respond to the listCollections() function routed by GET /api/collections/list
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + content[{"id":"57ec535460b2b19feba327cf","collectionname":"Collection 2 Test Suite","description":"Collection 2 Tests Description","created":"Wed Sep 28 18:33:40 CDT 2016","thumbnail":"None","authorId":"000000000000000000000000"},{"id":"57ec535460b2b19feba327ce","collectionname":"Collection 1 Test Suite","description":"Collection 1 Tests Description","created":"Wed Sep 28 18:33:40 CDT 2016","thumbnail":"None","authorId":"000000000000000000000000"}]
28-Sep-2016 18:33:41 2016-09-28 18:33:41,548 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 [info] - must respond to the removeCollection(coll_id:UUID) function routed by POST /api/collections/:coll_id/remove 
28-Sep-2016 18:33:41 [info]   + Status_Get=200
28-Sep-2016 18:33:41 [info]   + contentType_Get=Some(application/json)
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + {
28-Sep-2016 18:33:41 [info]   "status" : "success"
28-Sep-2016 18:33:41 [info] }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,562 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 [info] - must respond to the removeCollection(coll_id:UUID) function routed by DELETE /api/collections/:id 
28-Sep-2016 18:33:41 [info]   + Status_Get=200
28-Sep-2016 18:33:41 [info]   + contentType_Get=Some(application/json)
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + {
28-Sep-2016 18:33:41 [info]   "status" : "success"
28-Sep-2016 18:33:41 [info] }
28-Sep-2016 18:33:41 2016-09-28 18:33:41,596 - [DEBUG  ] - application - File1 is File:True
28-Sep-2016 18:33:41 [info] PreviewsAPIAppSpec:
28-Sep-2016 18:33:41 [info] The Previews API Spec
28-Sep-2016 18:33:41 [info] - must provide a FakeApplication
28-Sep-2016 18:33:41 [info] - must make the FakeApplication available implicitly
28-Sep-2016 18:33:41 [info] - must start the FakeApplication
28-Sep-2016 18:33:41 [info] The Previews API Spec
28-Sep-2016 18:33:41 2016-09-28 18:33:41,657 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,662 - [INFO   ] - application - created file 57ec535560b2b19feba3280a
28-Sep-2016 18:33:41 2016-09-28 18:33:41,663 - [DEBUG  ] - application - Uploading file morrowplots.jpg
28-Sep-2016 18:33:41 [info] - must respond to the Upload File
28-Sep-2016 18:33:41 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + contentAsString{"id":"57ec535560b2b19feba3280a"}
28-Sep-2016 18:33:41 2016-09-28 18:33:41,668 - [DEBUG  ] - application - File1 is File:True
28-Sep-2016 18:33:41 2016-09-28 18:33:41,694 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,697 - [DEBUG  ] - application - ########Uploading Preview----morrowplots-preview.jpg
28-Sep-2016 18:33:41 2016-09-28 18:33:41,707 - [INFO   ] - application - Uploading Completed
28-Sep-2016 18:33:41 2016-09-28 18:33:41,719 - [DEBUG  ] - application - ctp: Some(application/octet-stream)
28-Sep-2016 18:33:41 2016-09-28 18:33:41,725 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 [info] - must respond to the upload() and download() function routed by POST/GET /api/previews
28-Sep-2016 18:33:41 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:41 [info]   + contentAsString{"id":"57ec535560b2b19feba32815"}
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + {
28-Sep-2016 18:33:41 [info]   "id" : "57ec535560b2b19feba32815"
28-Sep-2016 18:33:41 [info] }
28-Sep-2016 18:33:41 [info]   + id value 57ec535560b2b19feba32815
28-Sep-2016 18:33:41 [info]   + Status=200
28-Sep-2016 18:33:41 [info]   + contentType=Some(image/jpeg)
28-Sep-2016 18:33:41 2016-09-28 18:33:41,800 - [DEBUG  ] - application - File2 is File:True
28-Sep-2016 18:33:41 2016-09-28 18:33:41,810 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,811 - [DEBUG  ] - application - {"Image":"fid","extractor_id":"test-extractor"}
28-Sep-2016 18:33:41 2016-09-28 18:33:41,811 - [DEBUG  ] - application - ListBuffer((Image,"fid"), (extractor_id,"test-extractor"))
28-Sep-2016 18:33:41 2016-09-28 18:33:41,814 - [DEBUG  ] - application - Updating previews.files 57ec535560b2b19feba32815 with Map(Image -> fid, extractor_id -> test-extractor)
28-Sep-2016 18:33:41 2016-09-28 18:33:41,827 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,828 - [DEBUG  ] - application - api.Files.attachPreview(): No "extractor_id" specified in request, set it to None.  request.body: {}
28-Sep-2016 18:33:41 [info]   + contentAsString2000
28-Sep-2016 18:33:41 [info] ������������JFIFHH���������ExifMM*n
28-Sep-2016 18:33:41 [info] v���������%LLgoogleNexus OneHH        ���0220������������0100������������
28-Sep-2016 18:33:41 [info]  ���*2010:03:05 08:51:142010:03:05 08:51:14R980100 N���W���&(ydX
28-Sep-2016 18:33:41  ���d���3WGS-84ASCIIHYBRID-FIX2010:03:05���H������������C                
28-Sep-2016 18:33:41 [info] 
28-Sep-2016 18:33:41  $.' ",#(7),01444'9=82<.342������C                         
28-Sep-2016 18:33:41
28-Sep-2016 18:33:41 2!!22222222222222222222222222222222222222222222222222������uY!������        
28-Sep-2016 18:33:41 [info] ���������}!1AQa"q2���������#B������R������$3br���        
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28-Sep-2016 18:33:41 [info] 61d
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28-Sep-2016 18:33:41 ���eH���[���q������H���������#���c���������i������Xb���1��������+���P���G c���������%������7������������ !9 ygoL7|������sP���������q
28-Sep-2016 18:33:41 [info] Cms������k�����,*���������c���:ct���_��������������V���d������d5���u;������I���J��������������Z���������Uj���[O ������������\���XHN������2������=���wV���������������������������+?i���t&49���������������������������<_~!{���������e������ ���_\7.]������B���nVb���c���������������E��� ���e���������������H-���nUCgqt���y������A���`���������#���(������h������Uy������y���������Gs�����.IX������������J��������������������wo���<o���"���������$|s���m������$r���{������������"���07���e$���~���}������"tMV���~3��2���������
28-Sep-2016 18:33:41 [info] u�����������1$���3��������[kmp������]������O9���p=������V������������&�����������������~������qU���j
28-Sep-2016 18:33:41 [���������j���N������_���y,_���L��� ���������|M���-Q���b];��@�����T`<���G������RT���g���������N/���6���V���������k���u`���E���������������&�����������������Qu8V������ rz��������^������x���%���o-������0������q���������������������_{���3O���O������#������������f|+���NX���������������B5���F���%������������F���K���i&X������l���z���I������\|���4x���W������t���-�����������y1��� ln������+���������XIw������o���7`���������T~'���Y������n������\���=���A9��������d���V���@���I���&r�����������������Ii���������h"r������ ���pFX���������������J~������������������I$���������q���x������Q���u ���:.8���0q���1]���x���5E���q������������������<���M��������weX���<zg9�����������+���1uw��������������������������fS������������Z���������+\���2001���������������O������^���������w_���r���&��� [��        ���0_��������������        ������������������������������1K�����������'���������<N���\������������]��������:~���k`4��������(���z������+���H���Cp���4���������
28-Sep-2016 18:33:41 [info] ���$Fn���h��}������c������������������S{\���������/���~$xz/���cY����������������)�����z��������������_p:zQEg.������cJ;���[) 1T1������s���0j#[���v���m���a1R������t���<s���:c���z(�����������������^{������������>G�����������Ok}�����������������'���������(������K)��������������e������r������#���>���[���b������������������������W,���OC9h������
28-Sep-2016 18:33:41 [info] 0
28-Sep-2016 18:33:41 [info]
28-Sep-2016 18:33:41 [info] 
28-Sep-2016 18:33:41 2016-09-28 18:33:41,844 - [DEBUG  ] - application - attachToFile: extractorId is 'Some(Other)'.
28-Sep-2016 18:33:41 2016-09-28 18:33:41,845 - [DEBUG  ] - application - Updating previews.files 57ec535560b2b19feba32815 with Map()
28-Sep-2016 18:33:41 [info] - must respond to the uploadMetadata(id: UUID) and getMetadata(id: UUID) function routed by POST/GET /api/previews/:id/metadata
28-Sep-2016 18:33:41 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/test/data/previews/data-test-general.json
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + {
28-Sep-2016 18:33:41 [info]   "Image" : "fid",
28-Sep-2016 18:33:41 [info]   "extractor_id" : "test-extractor"
28-Sep-2016 18:33:41 [info] }
28-Sep-2016 18:33:41 [info]   + Status_Post=200
28-Sep-2016 18:33:41 [info]   + contentType_Post=Some(application/json)
28-Sep-2016 18:33:41 2016-09-28 18:33:41,854 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 2016-09-28 18:33:41,868 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:41 [info] - must respond to the attachPreview(file_id:UUID, preview:UUID) function routed by POST /api/files/:file_id/previews/:p_id 
28-Sep-2016 18:33:41 [info]   + Status_Post=200
28-Sep-2016 18:33:41 [info]   + contentType_Post=Some(application/json)
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + {
28-Sep-2016 18:33:41 [info]   "status" : "success"
28-Sep-2016 18:33:41 [info] }
28-Sep-2016 18:33:41 [info] - must respond to the filePreviewsList(id: UUID) function routed by GET /api/files/:file_id/listpreviews
28-Sep-2016 18:33:41 [info]   + Status_get=200
28-Sep-2016 18:33:41 [info]   + contentType_get=Some(application/json)
28-Sep-2016 18:33:41 [info]   + Pretty JSON format
28-Sep-2016 18:33:41 [info]   + [ {
28-Sep-2016 18:33:41 [info]   "id" : "57ec535560b2b19feba32815",
28-Sep-2016 18:33:41 [info]   "filename" : "morrowplots-preview.jpg",
28-Sep-2016 18:33:41 [info]   "contentType" : "image/jpeg"
28-Sep-2016 18:33:41 [info] } ]
28-Sep-2016 18:33:42 [info] - must respond to the getPreviews(id: UUID) function routed by GET /api/files/:file_id/getPreviews
28-Sep-2016 18:33:42 [info]   + Status_Get=200
28-Sep-2016 18:33:42 [info]   + contentType_Get=Some(application/json)
28-Sep-2016 18:33:42 [info]   + Pretty JSON format
28-Sep-2016 18:33:42 [info]   + [ {
28-Sep-2016 18:33:42 [info]   "file_id" : "57ec535560b2b19feba3280a",
28-Sep-2016 18:33:42 [info]   "previews" : [ {
28-Sep-2016 18:33:42 [info]     "pv_route" : "/api/previews/57ec535560b2b19feba32815",
28-Sep-2016 18:33:42 [info]     "p_main" : "thumbnail-previewer.js",
28-Sep-2016 18:33:42 [info]     "pv_id" : "57ec535560b2b19feba32815",
28-Sep-2016 18:33:42 [info]     "p_path" : "/assets/javascripts/previewers/thumbnail",
28-Sep-2016 18:33:42 [info]     "p_id" : "Thumbnail",
28-Sep-2016 18:33:42 [info]     "pv_length" : "9757",
28-Sep-2016 18:33:42 [info]     "pv_contenttype" : "image/jpeg"
28-Sep-2016 18:33:42 [info]   } ]
28-Sep-2016 18:33:42 [info] } ]
28-Sep-2016 18:33:42 2016-09-28 18:33:42,795 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:42 [info] - must respond to the list() function routed by GET /api/previews
28-Sep-2016 18:33:42 [info]   + Status=200
28-Sep-2016 18:33:42 [info]   + contentType=Some(application/json)
28-Sep-2016 18:33:42 [info]   + content[{"id":"57ec535560b2b19feba32815","filename":"morrowplots-preview.jpg","contentType":"image/jpeg"}]
28-Sep-2016 18:33:42 2016-09-28 18:33:42,804 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:42 [info] - must respond to the removePreview(id:UUID) function routed by DELETE /api/previews/:id for morrowplots preview file
28-Sep-2016 18:33:42 [info]   + Status_Get=200
28-Sep-2016 18:33:42 [info]   + contentType_Get=Some(application/json)
28-Sep-2016 18:33:42 [info]   + Pretty JSON format
28-Sep-2016 18:33:42 [info]   + {
28-Sep-2016 18:33:42 [info]   "status" : "success"
28-Sep-2016 18:33:42 [info] }
28-Sep-2016 18:33:42 2016-09-28 18:33:42,812 - [DEBUG  ] - application - Getting value for tos.date
28-Sep-2016 18:33:42 2016-09-28 18:33:42,914 - [DEBUG  ] - application - Deleting file from indexes morrowplots.jpg
28-Sep-2016 18:33:42 2016-09-28 18:33:42,914 - [DEBUG  ] - application - Deleting file: morrowplots.jpg
28-Sep-2016 18:33:42 [info] - must respond to the removeFile(id:UUID) function routed by DELETE /api/files/:id 
28-Sep-2016 18:33:42 [info]   + Status_Get=200
28-Sep-2016 18:33:42 [info]   + contentType_Get=Some(application/json)
28-Sep-2016 18:33:42 [info]   + Pretty JSON format
28-Sep-2016 18:33:42 [info]   + {
28-Sep-2016 18:33:42 [info]   "status" : "success"
28-Sep-2016 18:33:42 [info] }
28-Sep-2016 18:33:42 [info] ApplicationSpec:
28-Sep-2016 18:33:42 [info] The Application API Spec
28-Sep-2016 18:33:42 [info] - must provide a FakeApplication
28-Sep-2016 18:33:42 [info] - must make the FakeApplication available implicitly
28-Sep-2016 18:33:42 [info] - must start the FakeApplication
28-Sep-2016 18:33:42 [info] - must send 404 on a bad request
28-Sep-2016 18:33:43 2016-09-28 18:33:43,013 - [DEBUG  ] - application - Getting value for display.name
28-Sep-2016 18:33:43 2016-09-28 18:33:43,014 - [DEBUG  ] - application - Getting value for welcome.message
28-Sep-2016 18:33:43 2016-09-28 18:33:43,028 - [DEBUG  ] - application - Getting value for theme
28-Sep-2016 18:33:43 2016-09-28 18:33:43,355 - [DEBUG  ] - application - Getting value for display.name
28-Sep-2016 18:33:43 2016-09-28 18:33:43,363 - [DEBUG  ] - application - [securesocial] bootstrap path = securesocial/bootstrap/css/bootstrap.min.css
28-Sep-2016 18:33:43 2016-09-28 18:33:43,364 - [DEBUG  ] - application - [securesocial] assets controller = controllers.ReverseAssets
28-Sep-2016 18:33:43 2016-09-28 18:33:43,365 - [DEBUG  ] - application - [securesocial] favicon path = securesocial/images/favicon.png
28-Sep-2016 18:33:43 2016-09-28 18:33:43,365 - [DEBUG  ] - application - [securesocial] Jquery path = securesocial/javascripts/jquery-1.7.1.min.js
28-Sep-2016 18:33:43 2016-09-28 18:33:43,366 - [DEBUG  ] - application - [securesocial] custom css path = None
28-Sep-2016 18:33:43 2016-09-28 18:33:43,369 - [DEBUG  ] - application - Getting value for google.analytics
28-Sep-2016 18:33:43 [info] - must render the index page
28-Sep-2016 18:33:43 2016-09-28 18:33:43,384 - [DEBUG  ] - application - Getting value for theme
28-Sep-2016 18:33:43 2016-09-28 18:33:43,791 - [DEBUG  ] - application - Getting value for display.name
28-Sep-2016 18:33:43 2016-09-28 18:33:43,798 - [DEBUG  ] - application - Getting value for google.analytics
28-Sep-2016 18:33:43 [info] - must render index template
28-Sep-2016 18:33:43 2016-09-28 18:33:43,815 - [INFO   ] - application - [securesocial] unloaded event listener SecureSocialEventListener
28-Sep-2016 18:33:43 2016-09-28 18:33:43,815 - [INFO   ] - application - [securesocial] unloaded identity provider: userpass
28-Sep-2016 18:33:43 2016-09-28 18:33:43,816 - [INFO   ] - application - Application shutdown
28-Sep-2016 18:33:43 2016-09-28 18:33:43,817 - [INFO   ] - application - [securesocial] unloaded password hasher bcrypt
28-Sep-2016 18:33:43 2016-09-28 18:33:43,823 - [INFO   ] - play - Shutdown application default Akka system.
28-Sep-2016 18:33:43 2016-09-28 18:33:43,862 - [DEBUG  ] - application - SwaggerPlugin.onStop
28-Sep-2016 18:33:43 [info] ScalaTest
28-Sep-2016 18:33:43 [info] Run completed in 17 seconds, 174 milliseconds.
28-Sep-2016 18:33:43 [info] Total number of tests run: 83
28-Sep-2016 18:33:43 [info] Suites: completed 7, aborted 0
28-Sep-2016 18:33:43 [info] Tests: succeeded 83, failed 0, canceled 0, ignored 0, pending 0
28-Sep-2016 18:33:43 [info] All tests passed.
28-Sep-2016 18:33:43 [info] Passed: Total 6, Failed 0, Errors 0, Passed 6
28-Sep-2016 18:33:43 [success] Total time: 63 s, completed Sep 28, 2016 6:33:43 PM
28-Sep-2016 18:33:44 Finished task 'test' with result: Success
28-Sep-2016 18:33:44
Substituting variable: ${bamboo.buildNumber} with 1
28-Sep-2016 18:33:44 Starting task 'doc' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
28-Sep-2016 18:33:44
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev - default #1 (CATS-CORE676-JOB1-1)'
... running command line:
/home/bamboo/sbt-0.13.2/bin/sbt doc
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
... using extra environment variables:
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bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_127172620_branch_name=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_repository_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE676-JOB1-1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_15=/bin/sh /home/bamboo/bamboo-agent-home/temp/CATS-CORE676-JOB1-1-ScriptBuildTask-4574839370868869606.sh
JAVA_OPTS=-Dbamboo.buildNumber=1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_11=/home/bamboo/sbt-0.13.2/bin/sbt clean update
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=clowder
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
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bamboo_repository_127172620_git_username=
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bamboo_shortJobKey=JOB1
bamboo_planRepository_revision=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_buildTimeStamp=2016-09-28T15:55:55.530-05:00
bamboo_repository_previous_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_repository_127172620_previous_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_planRepository_previousRevision=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=CATS-CORE676-JOB1-1
bamboo_repository_git_branch=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
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bamboo_repository_127172620_git_branch=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
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bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
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bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
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bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
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bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
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bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
28-Sep-2016 18:33:44 Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0
28-Sep-2016 18:33:46 [info] Loading project definition from /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/project
28-Sep-2016 18:33:48 [info] Set current project to clowder (in build file:/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/)
28-Sep-2016 18:33:49 [info] Main Scala API documentation to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/target/scala-2.10/api...
28-Sep-2016 18:34:26 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/Global.scala:56: postfix operator minutes should be enabled
28-Sep-2016 18:34:26 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:26 [warn] This can be achieved by adding the import clause 'import scala.language.postfixOps'
28-Sep-2016 18:34:26 [warn] or by setting the compiler option -language:postfixOps.
28-Sep-2016 18:34:26 [warn] See the Scala docs for value scala.language.postfixOps for a discussion
28-Sep-2016 18:34:26 [warn] why the feature should be explicitly enabled.
28-Sep-2016 18:34:26 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
28-Sep-2016 18:34:26 [warn]                                                           ^
28-Sep-2016 18:34:26 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/Global.scala:56: postfix operator minutes should be enabled
28-Sep-2016 18:34:26 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:26 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
28-Sep-2016 18:34:26 [warn]                                                                      ^
28-Sep-2016 18:34:26 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/Global.scala:62: postfix operator minutes should be enabled
28-Sep-2016 18:34:26 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:26 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
28-Sep-2016 18:34:26 [warn]                                                     ^
28-Sep-2016 18:34:26 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/Global.scala:62: postfix operator minutes should be enabled
28-Sep-2016 18:34:26 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:26 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
28-Sep-2016 18:34:26 [warn]                                                                ^
28-Sep-2016 18:34:27 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Admin.scala:183: postfix operator seconds should be enabled
28-Sep-2016 18:34:27 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:27 [warn]     Akka.system.scheduler.scheduleOnce(1 seconds) {
28-Sep-2016 18:34:27 [warn]                                          ^
28-Sep-2016 18:34:28 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Collections.scala:580: a pure expression does nothing in statement position; you may be omitting necessary parentheses
28-Sep-2016 18:34:28 [warn]           return true
28-Sep-2016 18:34:28 [warn]                  ^
28-Sep-2016 18:34:28 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Collections.scala:580: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
28-Sep-2016 18:34:28 [warn]           return true
28-Sep-2016 18:34:28 [warn]           ^
28-Sep-2016 18:34:28 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Collections.scala:582: a pure expression does nothing in statement position; you may be omitting necessary parentheses
28-Sep-2016 18:34:28 [warn]           return false
28-Sep-2016 18:34:28 [warn]                  ^
28-Sep-2016 18:34:28 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Collections.scala:582: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
28-Sep-2016 18:34:28 [warn]           return false
28-Sep-2016 18:34:28 [warn]           ^
28-Sep-2016 18:34:29 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/CurationObjects.scala:126: postfix operator toList should be enabled
28-Sep-2016 18:34:29 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:29 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
28-Sep-2016 18:34:29 [warn]                                                                                                                                ^
28-Sep-2016 18:34:33 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Extractions.scala:15: imported `Files' is permanently hidden by definition of class Files in package api
28-Sep-2016 18:34:33 [warn] import play.api.libs.{Files, MimeTypes}
28-Sep-2016 18:34:33 [warn]                       ^
28-Sep-2016 18:34:34 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Files.scala:427: @deprecated now takes two arguments; see the scaladoc.
28-Sep-2016 18:34:34 [warn]   @deprecated
28-Sep-2016 18:34:34 [warn]    ^
28-Sep-2016 18:34:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Geostreams.scala:43: postfix operator tupled should be enabled
28-Sep-2016 18:34:37 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:37 [warn]   ) tupled
28-Sep-2016 18:34:37 [warn]     ^
28-Sep-2016 18:34:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Geostreams.scala:51: postfix operator tupled should be enabled
28-Sep-2016 18:34:37 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:37 [warn]   ) tupled
28-Sep-2016 18:34:37 [warn]     ^
28-Sep-2016 18:34:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/api/Geostreams.scala:60: postfix operator tupled should be enabled
28-Sep-2016 18:34:37 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:37 [warn]   ) tupled
28-Sep-2016 18:34:37 [warn]     ^
28-Sep-2016 18:34:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBInstitutionService.scala:3: imported `Institution' is permanently hidden by definition of object Institution in package mongodb
28-Sep-2016 18:34:37 [warn] import models.Institution
28-Sep-2016 18:34:37 [warn]               ^
28-Sep-2016 18:34:38 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBProjectService.scala:3: imported `Project' is permanently hidden by definition of object Project in package mongodb
28-Sep-2016 18:34:38 [warn] import models.Project
28-Sep-2016 18:34:38 [warn]               ^
28-Sep-2016 18:34:40 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/controllers/CurationObjects.scala:11: imported `Files' is permanently hidden by definition of class Files in package controllers
28-Sep-2016 18:34:40 [warn] import play.api.libs.Files
28-Sep-2016 18:34:40 [warn]                      ^
28-Sep-2016 18:34:42 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/controllers/CurationObjects.scala:428: postfix operator toList should be enabled
28-Sep-2016 18:34:42 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:42 [warn]       metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
28-Sep-2016 18:34:42 [warn]                                                                                                                          ^
28-Sep-2016 18:34:42 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/controllers/CurationObjects.scala:657: postfix operator toList should be enabled
28-Sep-2016 18:34:42 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:42 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
28-Sep-2016 18:34:42 [warn]                                                                                                                                ^
28-Sep-2016 18:34:43 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/controllers/Registration.scala:13: imported `Registration' is permanently hidden by definition of class Registration in package controllers
28-Sep-2016 18:34:43 [warn] import securesocial.controllers.{ProviderController, Registration, TemplatesPlugin}
28-Sep-2016 18:34:43 [warn]                                                      ^
28-Sep-2016 18:34:43 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/controllers/Registration.scala:57: reflective access of structural type member value currentHasher should be enabled
28-Sep-2016 18:34:43 [warn] by making the implicit value scala.language.reflectiveCalls visible.
28-Sep-2016 18:34:43 [warn] This can be achieved by adding the import clause 'import scala.language.reflectiveCalls'
28-Sep-2016 18:34:43 [warn] or by setting the compiler option -language:reflectiveCalls.
28-Sep-2016 18:34:43 [warn] See the Scala docs for value scala.language.reflectiveCalls for a discussion
28-Sep-2016 18:34:43 [warn] why the feature should be explicitly enabled.
28-Sep-2016 18:34:43 [warn]                 passwordInfo = Some(Registry.hashers.currentHasher.hash(info.password))
28-Sep-2016 18:34:43 [warn]                                                      ^
28-Sep-2016 18:34:44 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/controllers/Spaces.scala:265: postfix operator toMap should be enabled
28-Sep-2016 18:34:44 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:44 [warn]         val roleDescription = users.listRoles() map (t => t.name -> t.description) toMap
28-Sep-2016 18:34:44 [warn]                                                                                    ^
28-Sep-2016 18:34:46 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/models/UUID.scala:36: implicit conversion method stringToUUID should be enabled
28-Sep-2016 18:34:46 [warn] by making the implicit value scala.language.implicitConversions visible.
28-Sep-2016 18:34:46 [warn] This can be achieved by adding the import clause 'import scala.language.implicitConversions'
28-Sep-2016 18:34:46 [warn] or by setting the compiler option -language:implicitConversions.
28-Sep-2016 18:34:46 [warn] See the Scala docs for value scala.language.implicitConversions for a discussion
28-Sep-2016 18:34:46 [warn] why the feature should be explicitly enabled.
28-Sep-2016 18:34:46 [warn]   implicit def stringToUUID(s: String) = UUID(s)
28-Sep-2016 18:34:46 [warn]                ^
28-Sep-2016 18:34:46 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/models/UUID.scala:37: implicit conversion method uuidToObjectId should be enabled
28-Sep-2016 18:34:46 [warn] by making the implicit value scala.language.implicitConversions visible.
28-Sep-2016 18:34:46 [warn]   implicit def uuidToObjectId(uuid: UUID) = new ObjectId(uuid.stringify)
28-Sep-2016 18:34:46 [warn]                ^
28-Sep-2016 18:34:46 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/models/UUID.scala:38: implicit conversion method objectIdToUUID should be enabled
28-Sep-2016 18:34:46 [warn] by making the implicit value scala.language.implicitConversions visible.
28-Sep-2016 18:34:46 [warn]   implicit def objectIdToUUID(objectId: ObjectId) = UUID(objectId.toString)
28-Sep-2016 18:34:46 [warn]                ^
28-Sep-2016 18:34:46 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/models/User.scala:100: implicit conversion method userToMiniUser should be enabled
28-Sep-2016 18:34:46 [warn] by making the implicit value scala.language.implicitConversions visible.
28-Sep-2016 18:34:46 [warn]   implicit def userToMiniUser(x: User): MiniUser = x.getMiniUser
28-Sep-2016 18:34:46 [warn]                ^
28-Sep-2016 18:34:47 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/PolyglotPlugin.scala:83: postfix operator seconds should be enabled
28-Sep-2016 18:34:47 [warn] by making the implicit value scala.language.postfixOps visible.
28-Sep-2016 18:34:47 [warn]           akka.pattern.after(3 seconds, using = Akka.system.scheduler)(checkForFileAndDownload((triesLeft - 1), url, outputStream))
28-Sep-2016 18:34:47 [warn]                                ^
28-Sep-2016 18:34:48 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoContext.scala:253: implicit conversion method dbObjectToString should be enabled
28-Sep-2016 18:34:48 [warn] by making the implicit value scala.language.implicitConversions visible.
28-Sep-2016 18:34:48 [warn]   implicit def dbObjectToString(dbObject: DBObject): String = {
28-Sep-2016 18:34:48 [warn]                ^
28-Sep-2016 18:34:49 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBCommentService.scala:3: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
28-Sep-2016 18:34:49 [warn] import models.{UUID, Comment}
28-Sep-2016 18:34:49 [warn]                      ^
28-Sep-2016 18:34:52 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBTagService.scala:7: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
28-Sep-2016 18:34:52 [warn] import models.{Tag, UUID}
28-Sep-2016 18:34:52 [warn]                ^
28-Sep-2016 18:34:52 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBExtractionRequestsService.scala:20: imported `MongoSalatPlugin' is permanently hidden by definition of class MongoSalatPlugin in package mongodb
28-Sep-2016 18:34:52 [warn] import services.mongodb.MongoSalatPlugin
28-Sep-2016 18:34:52 [warn]                         ^
28-Sep-2016 18:34:53 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBExtractionService.scala:4: imported `Extraction' is permanently hidden by definition of object Extraction in package mongodb
28-Sep-2016 18:34:53 [warn] import models.{UUID, Extraction}
28-Sep-2016 18:34:53 [warn]                      ^
28-Sep-2016 18:34:53 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBExtractionService.scala:13: imported `WebPageResource' is permanently hidden by definition of object WebPageResource in package mongodb
28-Sep-2016 18:34:53 [warn] import models.WebPageResource
28-Sep-2016 18:34:53 [warn]               ^
28-Sep-2016 18:34:55 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBSectionService.scala:5: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
28-Sep-2016 18:34:55 [warn] import models.{UUID, Tag, Comment, Section, User}
28-Sep-2016 18:34:55 [warn]                      ^
28-Sep-2016 18:34:55 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBSectionService.scala:5: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
28-Sep-2016 18:34:55 [warn] import models.{UUID, Tag, Comment, Section, User}
28-Sep-2016 18:34:55 [warn]                           ^
28-Sep-2016 18:34:55 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBSpaceService.scala:19: imported `Collection' is permanently hidden by definition of object Collection in package mongodb
28-Sep-2016 18:34:55 [warn] import models.Collection
28-Sep-2016 18:34:55 [warn]               ^
28-Sep-2016 18:34:55 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/mongodb/MongoDBSpaceService.scala:20: imported `Dataset' is permanently hidden by definition of object Dataset in package mongodb
28-Sep-2016 18:34:55 [warn] import models.Dataset
28-Sep-2016 18:34:55 [warn]               ^
28-Sep-2016 18:35:17 model contains 843 documentable templates
28-Sep-2016 18:35:23 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/app/services/irods/IRODSPlugin.scala:9: Tag '@date' is not recognised
28-Sep-2016 18:35:23 [warn] /**
28-Sep-2016 18:35:23 [warn] ^
28-Sep-2016 18:35:35 [warn] 39 warnings found
28-Sep-2016 18:35:35 [info] Main Scala API documentation successful.
28-Sep-2016 18:35:35 [success] Total time: 108 s, completed Sep 28, 2016 6:35:35 PM
28-Sep-2016 18:35:35 Finished task 'doc' with result: Success
28-Sep-2016 18:35:35 Starting task 'sphinx' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
28-Sep-2016 18:35:36
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev - default #1 (CATS-CORE676-JOB1-1)'
... running command line:
/usr/bin/sphinx-build -b html -d _build/doctrees . _build/html
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx
... using extra environment variables:
bamboo_planRepository_1_branch=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_127172620_branch_name=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_repository_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE676-JOB1-1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_15=/bin/sh /home/bamboo/bamboo-agent-home/temp/CATS-CORE676-JOB1-1-ScriptBuildTask-4574839370868869606.sh
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_11=/home/bamboo/sbt-0.13.2/bin/sbt clean update
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=clowder
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
bamboo_buildKey=CATS-CORE676-JOB1
bamboo_capability_system_os=linux
bamboo_shortPlanName=bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_planRepository_name=clowder
bamboo_buildNumber=1
bamboo_shortJobName=default
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE676-JOB1-1
bamboo_repository_127172620_git_username=
bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_agentId=108560385
bamboo_planName=Clowder - CORE - bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_shortPlanKey=CORE676
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_planRepository_revision=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_buildTimeStamp=2016-09-28T15:55:55.530-05:00
bamboo_repository_previous_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_repository_127172620_previous_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_planRepository_previousRevision=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=CATS-CORE676-JOB1-1
bamboo_repository_git_branch=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_repository_branch_name=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_buildPlanName=Clowder - CORE - bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev - default
bamboo_planRepository_1_revision=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_repository_name=clowder
bamboo_repository_127172620_git_branch=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
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bamboo_planRepository_1_branchName=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
28-Sep-2016 18:35:37 Making output directory...
28-Sep-2016 18:35:37 Running Sphinx v1.2.2
28-Sep-2016 18:35:37 loading pickled environment... not yet created
28-Sep-2016 18:35:38 building [html]: targets for 12 source files that are out of date
28-Sep-2016 18:35:38 updating environment: 12 added, 0 changed, 0 removed
28-Sep-2016 18:35:38 reading sources... [  8%] api
28-Sep-2016 18:35:38 reading sources... [ 16%] architecture
28-Sep-2016 18:35:38 reading sources... [ 25%] extractors
28-Sep-2016 18:35:38 reading sources... [ 33%] index
28-Sep-2016 18:35:38 reading sources... [ 41%] installation
28-Sep-2016 18:35:38 reading sources... [ 50%] license
28-Sep-2016 18:35:38 reading sources... [ 58%] overview
28-Sep-2016 18:35:38 reading sources... [ 66%] previewers
28-Sep-2016 18:35:38 reading sources... [ 75%] setup
28-Sep-2016 18:35:38 reading sources... [ 83%] setup_dev
28-Sep-2016 18:35:38 reading sources... [ 91%] source
28-Sep-2016 18:35:38 reading sources... [100%] thankyou
28-Sep-2016 18:35:38 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/license.rst:10: WARNING: Title underline too short.
28-Sep-2016 18:35:38
28-Sep-2016 18:35:38 Contributors
28-Sep-2016 18:35:38
28-Sep-2016 18:35:38 -------
28-Sep-2016 18:35:38 looking for now-outdated files... none found
28-Sep-2016 18:35:38 pickling environment... done
28-Sep-2016 18:35:38 checking consistency... done
28-Sep-2016 18:35:38 preparing documents... done
28-Sep-2016 18:35:38 writing output... [  8%] api
28-Sep-2016 18:35:39 writing output... [ 16%] architecture
28-Sep-2016 18:35:39 writing output... [ 25%] extractors
28-Sep-2016 18:35:39 writing output... [ 33%] index
28-Sep-2016 18:35:39 writing output... [ 41%] installation
28-Sep-2016 18:35:39 writing output... [ 50%] license
28-Sep-2016 18:35:39 writing output... [ 58%] overview
28-Sep-2016 18:35:39 writing output... [ 66%] previewers
28-Sep-2016 18:35:39 writing output... [ 75%] setup
28-Sep-2016 18:35:39 writing output... [ 83%] setup_dev
28-Sep-2016 18:35:39 writing output... [ 91%] source
28-Sep-2016 18:35:39 writing output... [100%] thankyou
28-Sep-2016 18:35:39
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
28-Sep-2016 18:35:39 writing additional files... genindex search
28-Sep-2016 18:35:39 copying images... [ 20%] _static/dataset.png
28-Sep-2016 18:35:39 copying images... [ 40%] _static/data-model.jpg
28-Sep-2016 18:35:39 copying images... [ 60%] _static/extraction.jpg
28-Sep-2016 18:35:39 copying images... [ 80%] _static/architecture.jpg
28-Sep-2016 18:35:39 copying images... [100%] _static/logo_full.png
28-Sep-2016 18:35:39
28-Sep-2016 18:35:40 copying static files... done
28-Sep-2016 18:35:40 copying extra files... done
28-Sep-2016 18:35:40 dumping search index... done
28-Sep-2016 18:35:40 dumping object inventory... done
28-Sep-2016 18:35:40 build succeeded, 31 warnings.
28-Sep-2016 18:35:40 Finished task 'sphinx' with result: Success
28-Sep-2016 18:35:40
Substituting variable: ${bamboo.buildNumber} with 1
28-Sep-2016 18:35:40 Starting task 'dist' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
28-Sep-2016 18:35:40
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev - default #1 (CATS-CORE676-JOB1-1)'
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/home/bamboo/sbt-0.13.2/bin/sbt dist
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28-Sep-2016 18:35:40 Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0
28-Sep-2016 18:35:44 [info] Loading project definition from /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/project
28-Sep-2016 18:35:45 [info] Set current project to clowder (in build file:/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/)
28-Sep-2016 18:35:46 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/target/scala-2.10/clowder_2.10-0.9.x-SNAPSHOT-sources.jar ...
28-Sep-2016 18:35:46 [info] Done packaging.
28-Sep-2016 18:35:48 [info] Wrote /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/target/scala-2.10/clowder_2.10-0.9.x-SNAPSHOT.pom
28-Sep-2016 18:35:49 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/target/scala-2.10/clowder_2.10-0.9.x-SNAPSHOT-javadoc.jar ...
28-Sep-2016 18:35:49 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/target/scala-2.10/clowder_2.10-0.9.x-SNAPSHOT.jar ...
28-Sep-2016 18:35:50 [info] Done packaging.
28-Sep-2016 18:35:53 [info] Done packaging.
28-Sep-2016 18:36:04 [info]
28-Sep-2016 18:36:04 [info] Your package is ready in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1/target/universal/clowder-0.9.x-SNAPSHOT.zip
28-Sep-2016 18:36:04 [info]
28-Sep-2016 18:36:04 [success] Total time: 18 s, completed Sep 28, 2016 6:36:04 PM
28-Sep-2016 18:36:04 Finished task 'dist' with result: Success
28-Sep-2016 18:36:04 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
28-Sep-2016 18:36:04
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev - default #1 (CATS-CORE676-JOB1-1)'
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... using extra environment variables:
bamboo_planRepository_1_branch=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_127172620_branch_name=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_repository_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE676-JOB1-1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_10=/home/bamboo/sbt-0.13.2/bin/sbt dist
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_15=/bin/sh /home/bamboo/bamboo-agent-home/temp/CATS-CORE676-JOB1-1-ScriptBuildTask-4574839370868869606.sh
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_12=/usr/bin/sphinx-build -b html -d _build/doctrees . _build/html
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_11=/home/bamboo/sbt-0.13.2/bin/sbt clean update
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=clowder
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
bamboo_buildKey=CATS-CORE676-JOB1
bamboo_capability_system_os=linux
bamboo_shortPlanName=bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_planRepository_name=clowder
bamboo_buildNumber=1
bamboo_shortJobName=default
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE676-JOB1-1
bamboo_repository_127172620_git_username=
bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_agentId=108560385
bamboo_planName=Clowder - CORE - bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_shortPlanKey=CORE676
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_planRepository_revision=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_buildTimeStamp=2016-09-28T15:55:55.530-05:00
bamboo_repository_previous_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_repository_127172620_previous_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_planRepository_previousRevision=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=CATS-CORE676-JOB1-1
bamboo_repository_git_branch=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_repository_branch_name=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_buildPlanName=Clowder - CORE - bugfix-CATS-669-extractor-timestamps-off-on-sead2-dev - default
bamboo_planRepository_1_revision=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_repository_name=clowder
bamboo_repository_127172620_git_branch=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_branch=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_repository_127172620_name=clowder
bamboo_planRepository_1_previousRevision=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_repository_git_username=
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=stash-rep
bamboo_planRepository_branchName=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
bamboo_capability_system_hostname=buildserver-1
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_type=stash-rep
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_7=/home/bamboo/sbt-0.13.2/bin/sbt compile
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_9=/home/bamboo/sbt-0.13.2/bin/sbt doc
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_8=/home/bamboo/sbt-0.13.2/bin/sbt test-only integration.APITestSuite
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1
bamboo_planKey=CATS-CORE676
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_planRepository_username=
bamboo_repository_127172620_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_repository_127172620_revision_number=b6d859cbc581fb5c3d781baa730cc17fa66d60f1
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/CATS-669-extractor-timestamps-off-on-sead2-dev
28-Sep-2016 18:36:07 Sending build context to Docker daemon 557.1 kB
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28-Sep-2016 18:36:08 Sending build context to Docker daemon  59.6 MB
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28-Sep-2016 18:36:10 Sending build context to Docker daemon   132 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon 132.6 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon 133.1 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon 133.7 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon 134.3 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon 134.8 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon 135.4 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon 135.9 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon 136.5 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon   137 MB
28-Sep-2016 18:36:10 Sending build context to Docker daemon 137.4 MB
28-Sep-2016 18:36:10
28-Sep-2016 18:36:10 Step 1 : FROM java:8-jre
28-Sep-2016 18:36:10 8-jre: Pulling from library/java
28-Sep-2016 18:36:10 Digest: sha256:b4b9299ec015c17a1e38d6cf4fda5fefe3a383ddbe77f289884679073385bc50
28-Sep-2016 18:36:10 Status: Image is up to date for java:8-jre
28-Sep-2016 18:36:10 ---> e1c2390521a3
28-Sep-2016 18:36:10 Step 2 : MAINTAINER Rob Kooper <kooper@illinois.edu>
28-Sep-2016 18:36:10 ---> Using cache
28-Sep-2016 18:36:10 ---> 8949aea9459b
28-Sep-2016 18:36:10 Step 3 : EXPOSE 9000
28-Sep-2016 18:36:10 ---> Using cache
28-Sep-2016 18:36:10 ---> 20fb9bfc14dd
28-Sep-2016 18:36:10 Step 4 : ENV CLOWDER_CONTEXT "/" CLOWDER_ADMINS "" MONGO_URI "" SMTP_HOST "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_URI "" RABBITMQ_MGMT_PORT "" ELASTICSEARCH_SERVICE_CLUSTERNAME "clowder" ELASTICSEARCH_SERVICE_SERVER "" ELASTICSEARCH_SERVICE_PORT "" TOOLMANAGER_URI ""
28-Sep-2016 18:36:10 ---> Using cache
28-Sep-2016 18:36:10 ---> f672c5df1596
28-Sep-2016 18:36:10 Step 5 : RUN useradd -s /bin/bash clowder
28-Sep-2016 18:36:10 ---> Using cache
28-Sep-2016 18:36:10 ---> dc491c75d7a6
28-Sep-2016 18:36:10 Step 6 : COPY files entrypoint.sh /home/clowder/
28-Sep-2016 18:36:18 ---> 76b94288ff51
28-Sep-2016 18:36:18 Removing intermediate container 3d3aece7c579
28-Sep-2016 18:36:18 Step 7 : RUN mkdir -p /home/clowder/clowder/custom /home/clowder/clowder/logs     && chown clowder /home/clowder/clowder /home/clowder/clowder/custom /home/clowder/clowder/logs
28-Sep-2016 18:36:18 ---> Running in d4edad6343f0
28-Sep-2016 18:36:20 ---> 1fdd6907c120
28-Sep-2016 18:36:20 Removing intermediate container d4edad6343f0
28-Sep-2016 18:36:20 Step 8 : ENTRYPOINT /home/clowder/entrypoint.sh
28-Sep-2016 18:36:20 ---> Running in 6e9e4757a54a
28-Sep-2016 18:36:20 ---> dd083c0dfc36
28-Sep-2016 18:36:20 Removing intermediate container 6e9e4757a54a
28-Sep-2016 18:36:20 Step 9 : CMD server
28-Sep-2016 18:36:20 ---> Running in df74cdd61e72
28-Sep-2016 18:36:20 ---> 341f0189c393
28-Sep-2016 18:36:20 Removing intermediate container df74cdd61e72
28-Sep-2016 18:36:20 Step 10 : USER clowder
28-Sep-2016 18:36:20 ---> Running in c58dae6b81c6
28-Sep-2016 18:36:20 ---> e62c431808e2
28-Sep-2016 18:36:20 Removing intermediate container c58dae6b81c6
28-Sep-2016 18:36:20 Successfully built e62c431808e2
28-Sep-2016 18:36:20 Sending build context to Docker daemon 22.02 kB
28-Sep-2016 18:36:20
28-Sep-2016 18:36:20 Step 1 : FROM ubuntu
28-Sep-2016 18:36:21 latest: Pulling from library/ubuntu
28-Sep-2016 18:36:21 Digest: sha256:28d4c5234db8d5a634d5e621c363d900f8f241240ee0a6a978784c978fe9c737
28-Sep-2016 18:36:21 Status: Image is up to date for ubuntu:latest
28-Sep-2016 18:36:21 ---> c73a085dc378
28-Sep-2016 18:36:21 Step 2 : RUN apt-get -y update     && apt-get -y install curl unzip docker.io python python-dev python-pip     && pip install flask-restful     && pip install arrow     && apt-get clean all     && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*     ;
28-Sep-2016 18:36:21 ---> Using cache
28-Sep-2016 18:36:21 ---> fadcd9b01cd7
28-Sep-2016 18:36:21 Step 3 : COPY FILES.toolserver /
28-Sep-2016 18:36:21 ---> Using cache
28-Sep-2016 18:36:21 ---> 61c75d39fb4b
28-Sep-2016 18:36:21 Step 4 : ENV TOOLSERVER_PORT 8082
28-Sep-2016 18:36:21 ---> Using cache
28-Sep-2016 18:36:21 ---> 05139d48e24d
28-Sep-2016 18:36:21 Step 5 : CMD /usr/local/bin/usage
28-Sep-2016 18:36:21 ---> Using cache
28-Sep-2016 18:36:21 ---> 4283581b009c
28-Sep-2016 18:36:21 Successfully built 4283581b009c
28-Sep-2016 18:36:21 Tagged clowder toolserver with local
28-Sep-2016 18:36:22 Tagged clowder toolserver with local
28-Sep-2016 18:36:22 Untagged: toolserver-13551:latest
28-Sep-2016 18:36:22 Untagged: clowder-13551:latest
28-Sep-2016 18:36:22 Finished task 'docker build' with result: Success
28-Sep-2016 18:36:22 Starting task 'junit' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
28-Sep-2016 18:36:22 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE676-JOB1...
28-Sep-2016 18:36:22 Finished task 'junit' with result: Success
28-Sep-2016 18:36:22 Running post build plugin 'Docker Container Cleanup'
28-Sep-2016 18:36:22 Running post build plugin 'NCover Results Collector'
28-Sep-2016 18:36:23 Running post build plugin 'Clover Results Collector'
28-Sep-2016 18:36:23 Running post build plugin 'npm Cache Cleanup'
28-Sep-2016 18:36:23 Running post build plugin 'Artifact Copier'
28-Sep-2016 18:36:23 Publishing an artifact: dist
28-Sep-2016 18:36:32 Finished publishing of artifact Shared artifact: [dist], pattern: [clowder-*.zip] anchored at: [target/universal] in 9.716 s
28-Sep-2016 18:36:32 Publishing an artifact: scaladoc
28-Sep-2016 18:36:34 Finished publishing of artifact Shared artifact: [scaladoc], pattern: [**/*] anchored at: [target/scala-2.10/api] in 1.787 s
28-Sep-2016 18:36:34 Publishing an artifact: manual
28-Sep-2016 18:36:35 Finished publishing of artifact Shared artifact: [manual], pattern: [**/*] anchored at: [doc/src/sphinx/_build/html] in 1.141 s
28-Sep-2016 18:36:35 Finalising the build...
28-Sep-2016 18:36:35 Stopping timer.
28-Sep-2016 18:36:35 Build CATS-CORE676-JOB1-1 completed.
28-Sep-2016 18:36:35 Running on server: post build plugin 'NCover Results Collector'
28-Sep-2016 18:36:35 Running on server: post build plugin 'Build Hanging Detection Configuration'
28-Sep-2016 18:36:35 Running on server: post build plugin 'Clover Delta Calculator'
28-Sep-2016 18:36:35 Running on server: post build plugin 'Maven Dependencies Postprocessor'
28-Sep-2016 18:36:35 All post build plugins have finished
28-Sep-2016 18:36:35 Generating build results summary...
28-Sep-2016 18:36:35 Saving build results to disk...
28-Sep-2016 18:36:35 Logging substituted variables...
28-Sep-2016 18:36:36 Indexing build results...
28-Sep-2016 18:36:36 Finished building CATS-CORE676-JOB1-1.