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  1. Default Stage

Build log

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06-Dec-2016 14:30:26 2016-12-06 14:30:26,528 - [DEBUG  ] - application - Searching datasets' metadata for search tree.
06-Dec-2016 14:30:26 2016-12-06 14:30:26,528 - [DEBUG  ] - application - thejsson: {"Reason":".*Suite.*"}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,529 - [DEBUG  ] - application - top: {Reason=.*Suite.*}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,529 - [DEBUG  ] - application - req: {Reason=.*Suite.*}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,532 - [DEBUG  ] - application - thequery: { "$and" : [ { "$or" : [ { "userMetadata.Reason" : ".*Suite.*"} , { "metadata.Reason" : ".*Suite.*"} , { "datasetXmlMetadata.xmlMetadata.Reason" : ".*Suite.*"}]}]}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,534 - [DEBUG  ] - application - Search completed. Returning datasets list.
06-Dec-2016 14:30:26 2016-12-06 14:30:26,536 - [DEBUG  ] - application - thelist: []
06-Dec-2016 14:30:26 [info] - must respond to the searchDatasetsGeneralMetadata() function routed by POST /api/datasets/searchmetadata 
06-Dec-2016 14:30:26 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
06-Dec-2016 14:30:26 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/test/data/datasets/dataset-search-general.json
06-Dec-2016 14:30:26 [info]   + Pretty JSON format
06-Dec-2016 14:30:26 [info]   + {
06-Dec-2016 14:30:26 [info]   "Reason" : ".*Suite.*"
06-Dec-2016 14:30:26 [info] }
06-Dec-2016 14:30:26 [info]   + Status=200
06-Dec-2016 14:30:26 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:26 [info]   + content[]
06-Dec-2016 14:30:26 2016-12-06 14:30:26,544 - [DEBUG  ] - application - File1 is File:True
06-Dec-2016 14:30:26 2016-12-06 14:30:26,549 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:26 2016-12-06 14:30:26,550 - [DEBUG  ] - application - Searching datasets' user metadata for search tree.
06-Dec-2016 14:30:26 2016-12-06 14:30:26,551 - [DEBUG  ] - application - thejsson: {"Other":".*Pretty Cool.*"}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,551 - [DEBUG  ] - application - top: {Other=.*Pretty Cool.*}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,553 - [DEBUG  ] - application - req: {Other=.*Pretty Cool.*}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,554 - [DEBUG  ] - application - thequery: { "$and" : [ { "userMetadata.Other" : ".*Pretty Cool.*"}]}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,555 - [DEBUG  ] - application - Search completed. Returning datasets list.
06-Dec-2016 14:30:26 2016-12-06 14:30:26,555 - [DEBUG  ] - application - thelist: []
06-Dec-2016 14:30:26 [info] - must respond to the searchDatasetsUserMetadata() function routed by POST /api/datasets/searchmetadata 
06-Dec-2016 14:30:26 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
06-Dec-2016 14:30:26 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/test/data/datasets/dataset-search-user.json
06-Dec-2016 14:30:26 [info]   + Pretty JSON format
06-Dec-2016 14:30:26 [info]   + {
06-Dec-2016 14:30:26 [info]   "Other" : ".*Pretty Cool.*"
06-Dec-2016 14:30:26 [info] }
06-Dec-2016 14:30:26 [info]   + Status=200
06-Dec-2016 14:30:26 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:26 [info]   + content[]
06-Dec-2016 14:30:26 2016-12-06 14:30:26,563 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:26 2016-12-06 14:30:26,566 - [DEBUG  ] - application - userdfSPARQLStore not enabled
06-Dec-2016 14:30:26 2016-12-06 14:30:26,579 - [DEBUG  ] - application - Removing XML metadata belonging to file 58471fe260b2b3624a7b0f9d from dataset 58471fe260b2b3624a7b0fb1.
06-Dec-2016 14:30:26 2016-12-06 14:30:26,603 - [ERROR  ] - application - File not found: 58471fe260b2b3624a7b0f9d
06-Dec-2016 14:30:26 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id 
06-Dec-2016 14:30:26 [info]   + Status_Get=200
06-Dec-2016 14:30:26 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:26 [info]   + Pretty JSON format
06-Dec-2016 14:30:26 [info]   + {
06-Dec-2016 14:30:26 [info]   "status" : "success"
06-Dec-2016 14:30:26 [info] }
06-Dec-2016 14:30:26 [info] CollectionsAPIAppSpec:
06-Dec-2016 14:30:26 [info] The Collections API Spec
06-Dec-2016 14:30:26 [info] - must provide a FakeApplication
06-Dec-2016 14:30:26 [info] - must make the FakeApplication available implicitly
06-Dec-2016 14:30:26 [info] - must start the FakeApplication
06-Dec-2016 14:30:26 [info] The Collections API Spec
06-Dec-2016 14:30:26 2016-12-06 14:30:26,613 - [DEBUG  ] - application - File1 is File:True
06-Dec-2016 14:30:26 2016-12-06 14:30:26,638 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:26 2016-12-06 14:30:26,639 - [DEBUG  ] - application - Creating new collection
06-Dec-2016 14:30:26 [info] - must respond to the createCollection() function routed by POST /api/collections for Collection 1
06-Dec-2016 14:30:26 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
06-Dec-2016 14:30:26 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/test/data/collections/data-test-collection.json
06-Dec-2016 14:30:26 [info]   + Pretty JSON format
06-Dec-2016 14:30:26 [info]   + {
06-Dec-2016 14:30:26 [info]   "description" : "Collection 1 Tests Description",
06-Dec-2016 14:30:26 [info]   "name" : "Collection 1 Test Suite",
06-Dec-2016 14:30:26 [info]   "space" : "default"
06-Dec-2016 14:30:26 [info] }
06-Dec-2016 14:30:26 [info]   + Status=200
06-Dec-2016 14:30:26 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:26 [info]   + content{"id":"58471fe260b2b3624a7b0fc8"}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,665 - [DEBUG  ] - application - File1 is File:True
06-Dec-2016 14:30:26 2016-12-06 14:30:26,668 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:26 2016-12-06 14:30:26,669 - [DEBUG  ] - application - Creating new collection
06-Dec-2016 14:30:26 [info] - must respond to the createCollection() function routed by POST /api/collections for Collection 2
06-Dec-2016 14:30:26 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
06-Dec-2016 14:30:26 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/test/data/collections/data-test-collection-1.json
06-Dec-2016 14:30:26 [info]   + Pretty JSON format
06-Dec-2016 14:30:26 [info]   + {
06-Dec-2016 14:30:26 [info]   "description" : "Collection 2 Tests Description",
06-Dec-2016 14:30:26 [info]   "name" : "Collection 2 Test Suite",
06-Dec-2016 14:30:26 [info]   "space" : "default"
06-Dec-2016 14:30:26 [info] }
06-Dec-2016 14:30:26 [info]   + Status=200
06-Dec-2016 14:30:26 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:26 [info]   + content{"id":"58471fe260b2b3624a7b0fc9"}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,675 - [DEBUG  ] - application - File1 is File:True
06-Dec-2016 14:30:26 2016-12-06 14:30:26,836 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:26 2016-12-06 14:30:26,844 - [DEBUG  ] - application - created file 58471fe260b2b3624a7b0fcb
06-Dec-2016 14:30:26 2016-12-06 14:30:26,844 - [DEBUG  ] - application - Uploading file dataset-image.zip
06-Dec-2016 14:30:26 2016-12-06 14:30:26,849 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:26 2016-12-06 14:30:26,850 - [DEBUG  ] - application - --- API Creating new dataset ----
06-Dec-2016 14:30:26 2016-12-06 14:30:26,856 - [ERROR  ] - application - Dataset not found: 58471fe260b2b3624a7b0fd3
06-Dec-2016 14:30:26 2016-12-06 14:30:26,865 - [DEBUG  ] - application - ----- Adding file to dataset completed
06-Dec-2016 14:30:26 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 1 Creation
06-Dec-2016 14:30:26 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
06-Dec-2016 14:30:26 [info]   + Status=200
06-Dec-2016 14:30:26 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:26 [info]   + contentAsString{"id":"58471fe260b2b3624a7b0fd3"}
06-Dec-2016 14:30:26 2016-12-06 14:30:26,874 - [DEBUG  ] - application - File1 is File:True
06-Dec-2016 14:30:26 2016-12-06 14:30:26,913 - [DEBUG  ] - application - Uploading Completed
06-Dec-2016 14:30:27 2016-12-06 14:30:27,050 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,057 - [DEBUG  ] - application - created file 58471fe360b2b3624a7b0fe3
06-Dec-2016 14:30:27 2016-12-06 14:30:27,057 - [DEBUG  ] - application - Uploading file dataset-image-1.zip
06-Dec-2016 14:30:27 2016-12-06 14:30:27,063 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,064 - [DEBUG  ] - application - --- API Creating new dataset ----
06-Dec-2016 14:30:27 2016-12-06 14:30:27,068 - [ERROR  ] - application - Dataset not found: 58471fe360b2b3624a7b0feb
06-Dec-2016 14:30:27 2016-12-06 14:30:27,083 - [DEBUG  ] - application - ----- Adding file to dataset completed
06-Dec-2016 14:30:27 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 2 Creation
06-Dec-2016 14:30:27 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:27 [info]   + contentAsString{"id":"58471fe360b2b3624a7b0feb"}
06-Dec-2016 14:30:27 2016-12-06 14:30:27,101 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,104 - [DEBUG  ] - application - Adding dataset 58471fe260b2b3624a7b0fd3 to collection 58471fe260b2b3624a7b0fc8
06-Dec-2016 14:30:27 2016-12-06 14:30:27,115 - [DEBUG  ] - application - retmd: { }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,116 - [DEBUG  ] - application - retmd: { }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,117 - [DEBUG  ] - application - Uploading Completed
06-Dec-2016 14:30:27 2016-12-06 14:30:27,118 - [DEBUG  ] - application - retmd: [ ]
06-Dec-2016 14:30:27 2016-12-06 14:30:27,126 - [DEBUG  ] - application - Adding dataset to collection completed
06-Dec-2016 14:30:27 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 1
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:27 [info]   + contentAsString{"datasetsInCollection":1}
06-Dec-2016 14:30:27 2016-12-06 14:30:27,139 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 [info] - must respond to the listInCollection(coll_id: UUID) function routed by GET /api/collections/:coll_id/getDatasets
06-Dec-2016 14:30:27 [info]   + Status_Get=200
06-Dec-2016 14:30:27 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + [ {
06-Dec-2016 14:30:27 [info]   "id" : "58471fe260b2b3624a7b0fd3",
06-Dec-2016 14:30:27 [info]   "name" : "Dataset 1 API Test Creation",
06-Dec-2016 14:30:27 [info]   "description" : "Part 1 of Dataset API Test Suite",
06-Dec-2016 14:30:27 [info]   "created" : "Tue Dec 06 14:30:26 CST 2016",
06-Dec-2016 14:30:27 [info]   "thumbnail" : "None",
06-Dec-2016 14:30:27 [info]   "authorId" : "000000000000000000000000",
06-Dec-2016 14:30:27 [info]   "spaces" : [ ]
06-Dec-2016 14:30:27 [info] } ]
06-Dec-2016 14:30:27 2016-12-06 14:30:27,151 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 [info] - must respond to the listOutsideCollection(coll_id: UUID) function routed by GET /api/datasets/listOutsideCollection/:coll_id
06-Dec-2016 14:30:27 [info]   + Status_Get=200
06-Dec-2016 14:30:27 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + [ {
06-Dec-2016 14:30:27 [info]   "id" : "58471fe360b2b3624a7b0feb",
06-Dec-2016 14:30:27 [info]   "name" : "Dataset 2 API Test Creation",
06-Dec-2016 14:30:27 [info]   "description" : "Part 2 of Dataset API Test Suite",
06-Dec-2016 14:30:27 [info]   "created" : "Tue Dec 06 14:30:27 CST 2016",
06-Dec-2016 14:30:27 [info]   "thumbnail" : "None",
06-Dec-2016 14:30:27 [info]   "authorId" : "000000000000000000000000",
06-Dec-2016 14:30:27 [info]   "spaces" : [ ]
06-Dec-2016 14:30:27 [info] }, {
06-Dec-2016 14:30:27 [info]   "id" : "58471fe260b2b3624a7b0fd3",
06-Dec-2016 14:30:27 [info]   "name" : "Dataset 1 API Test Creation",
06-Dec-2016 14:30:27 [info]   "description" : "Part 1 of Dataset API Test Suite",
06-Dec-2016 14:30:27 [info]   "created" : "Tue Dec 06 14:30:26 CST 2016",
06-Dec-2016 14:30:27 [info]   "thumbnail" : "None",
06-Dec-2016 14:30:27 [info]   "authorId" : "000000000000000000000000",
06-Dec-2016 14:30:27 [info]   "spaces" : [ ]
06-Dec-2016 14:30:27 [info] } ]
06-Dec-2016 14:30:27 2016-12-06 14:30:27,167 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,167 - [DEBUG  ] - application - Adding dataset 58471fe360b2b3624a7b0feb to collection 58471fe260b2b3624a7b0fc8
06-Dec-2016 14:30:27 2016-12-06 14:30:27,171 - [DEBUG  ] - application - retmd: { }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,172 - [DEBUG  ] - application - retmd: { }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,173 - [DEBUG  ] - application - retmd: [ ]
06-Dec-2016 14:30:27 2016-12-06 14:30:27,179 - [DEBUG  ] - application - Adding dataset to collection completed
06-Dec-2016 14:30:27 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 2
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:27 [info]   + contentAsString{"datasetsInCollection":2}
06-Dec-2016 14:30:27 2016-12-06 14:30:27,191 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,194 - [DEBUG  ] - application - Removing dataset 58471fe360b2b3624a7b0feb from collection 58471fe260b2b3624a7b0fc8
06-Dec-2016 14:30:27 2016-12-06 14:30:27,199 - [DEBUG  ] - application - retmd: { }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,200 - [DEBUG  ] - application - retmd: { }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,201 - [DEBUG  ] - application - retmd: [ ]
06-Dec-2016 14:30:27 2016-12-06 14:30:27,207 - [DEBUG  ] - application - Removing dataset from collection completed
06-Dec-2016 14:30:27 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNotFound) function routed by DELETE /api/collections/:coll_id/datasets/:ds_id for dataset 2
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:27 [info]   + contentAsString{"status":"success"}
06-Dec-2016 14:30:27 2016-12-06 14:30:27,220 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,221 - [DEBUG  ] - application - Removing dataset 58471fe260b2b3624a7b0fd3 from collection 58471fe260b2b3624a7b0fc8
06-Dec-2016 14:30:27 2016-12-06 14:30:27,225 - [DEBUG  ] - application - retmd: { }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,226 - [DEBUG  ] - application - retmd: { }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,226 - [DEBUG  ] - application - retmd: [ ]
06-Dec-2016 14:30:27 2016-12-06 14:30:27,230 - [DEBUG  ] - application - Removing dataset from collection completed
06-Dec-2016 14:30:27 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNoteFound) function routed by POST /api/collections/:coll_id/datasets/:ds_id/:ignoreNotFound for dataset 2
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:27 [info]   + contentAsString{"status":"success"}
06-Dec-2016 14:30:27 2016-12-06 14:30:27,239 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,242 - [DEBUG  ] - application - userdfSPARQLStore not enabled
06-Dec-2016 14:30:27 2016-12-06 14:30:27,252 - [DEBUG  ] - application - Removing XML metadata belonging to file 58471fe260b2b3624a7b0fcb from dataset 58471fe260b2b3624a7b0fd3.
06-Dec-2016 14:30:27 2016-12-06 14:30:27,260 - [ERROR  ] - application - File not found: 58471fe260b2b3624a7b0fcb
06-Dec-2016 14:30:27 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 1
06-Dec-2016 14:30:27 [info]   + Status_Get=200
06-Dec-2016 14:30:27 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + {
06-Dec-2016 14:30:27 [info]   "status" : "success"
06-Dec-2016 14:30:27 [info] }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,266 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,269 - [DEBUG  ] - application - userdfSPARQLStore not enabled
06-Dec-2016 14:30:27 2016-12-06 14:30:27,278 - [DEBUG  ] - application - Removing XML metadata belonging to file 58471fe360b2b3624a7b0fe3 from dataset 58471fe360b2b3624a7b0feb.
06-Dec-2016 14:30:27 2016-12-06 14:30:27,286 - [ERROR  ] - application - File not found: 58471fe360b2b3624a7b0fe3
06-Dec-2016 14:30:27 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 2
06-Dec-2016 14:30:27 [info]   + Status_Get=200
06-Dec-2016 14:30:27 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + {
06-Dec-2016 14:30:27 [info]   "status" : "success"
06-Dec-2016 14:30:27 [info] }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,300 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 [info] - must respond to the listCollections() function routed by GET /api/collections
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:27 [info]   + content[{"id":"58471fe260b2b3624a7b0fc9","collectionname":"Collection 2 Test Suite","description":"Collection 2 Tests Description","created":"Tue Dec 06 14:30:26 CST 2016","thumbnail":"None","authorId":"000000000000000000000000"},{"id":"58471fe260b2b3624a7b0fc8","collectionname":"Collection 1 Test Suite","description":"Collection 1 Tests Description","created":"Tue Dec 06 14:30:26 CST 2016","thumbnail":"None","authorId":"000000000000000000000000"}]
06-Dec-2016 14:30:27 2016-12-06 14:30:27,318 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 [info] - must respond to the listCollections() function routed by GET /api/collections/list
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:27 [info]   + content[{"id":"58471fe260b2b3624a7b0fc9","collectionname":"Collection 2 Test Suite","description":"Collection 2 Tests Description","created":"Tue Dec 06 14:30:26 CST 2016","thumbnail":"None","authorId":"000000000000000000000000"},{"id":"58471fe260b2b3624a7b0fc8","collectionname":"Collection 1 Test Suite","description":"Collection 1 Tests Description","created":"Tue Dec 06 14:30:26 CST 2016","thumbnail":"None","authorId":"000000000000000000000000"}]
06-Dec-2016 14:30:27 2016-12-06 14:30:27,330 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 [info] - must respond to the removeCollection(coll_id:UUID) function routed by POST /api/collections/:coll_id/remove 
06-Dec-2016 14:30:27 [info]   + Status_Get=200
06-Dec-2016 14:30:27 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + {
06-Dec-2016 14:30:27 [info]   "status" : "success"
06-Dec-2016 14:30:27 [info] }
06-Dec-2016 14:30:27 2016-12-06 14:30:27,347 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 [info] - must respond to the removeCollection(coll_id:UUID) function routed by DELETE /api/collections/:id 
06-Dec-2016 14:30:27 [info]   + Status_Get=200
06-Dec-2016 14:30:27 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + {
06-Dec-2016 14:30:27 [info]   "status" : "success"
06-Dec-2016 14:30:27 [info] }
06-Dec-2016 14:30:27 [info] PreviewsAPIAppSpec:
06-Dec-2016 14:30:27 [info] The Previews API Spec
06-Dec-2016 14:30:27 [info] - must provide a FakeApplication
06-Dec-2016 14:30:27 [info] - must make the FakeApplication available implicitly
06-Dec-2016 14:30:27 [info] - must start the FakeApplication
06-Dec-2016 14:30:27 [info] The Previews API Spec
06-Dec-2016 14:30:27 2016-12-06 14:30:27,392 - [DEBUG  ] - application - File1 is File:True
06-Dec-2016 14:30:27 2016-12-06 14:30:27,464 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,471 - [DEBUG  ] - application - created file 58471fe360b2b3624a7b1004
06-Dec-2016 14:30:27 2016-12-06 14:30:27,472 - [DEBUG  ] - application - Uploading file morrowplots.jpg
06-Dec-2016 14:30:27 [info] - must respond to the Upload File
06-Dec-2016 14:30:27 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:27 [info]   + contentAsString{"id":"58471fe360b2b3624a7b1004"}
06-Dec-2016 14:30:27 2016-12-06 14:30:27,478 - [DEBUG  ] - application - File1 is File:True
06-Dec-2016 14:30:27 2016-12-06 14:30:27,494 - [DEBUG  ] - application - Uploading Completed
06-Dec-2016 14:30:27 2016-12-06 14:30:27,509 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,511 - [DEBUG  ] - application - ########Uploading Preview----morrowplots-preview.jpg
06-Dec-2016 14:30:27 2016-12-06 14:30:27,550 - [DEBUG  ] - application - ctp: Some(application/octet-stream)
06-Dec-2016 14:30:27 2016-12-06 14:30:27,558 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,603 - [DEBUG  ] - application - : s-preview.j
06-Dec-2016 14:30:27 [info] - must respond to the upload() and download() function routed by POST/GET /api/previews
06-Dec-2016 14:30:27 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:27 [info]   + contentAsString{"id":"58471fe360b2b3624a7b100f"}
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + {
06-Dec-2016 14:30:27 [info]   "id" : "58471fe360b2b3624a7b100f"
06-Dec-2016 14:30:27 [info] }
06-Dec-2016 14:30:27 [info]   + id value 58471fe360b2b3624a7b100f
06-Dec-2016 14:30:27 [info]   + Status=200
06-Dec-2016 14:30:27 [info]   + contentType=Some(image/jpeg)
06-Dec-2016 14:30:27 2016-12-06 14:30:27,632 - [DEBUG  ] - application - File2 is File:True
06-Dec-2016 14:30:27 2016-12-06 14:30:27,640 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,641 - [DEBUG  ] - application - {"Image":"fid","extractor_id":"test-extractor"}
06-Dec-2016 14:30:27 2016-12-06 14:30:27,642 - [DEBUG  ] - application - ListBuffer((Image,"fid"), (extractor_id,"test-extractor"))
06-Dec-2016 14:30:27 2016-12-06 14:30:27,646 - [DEBUG  ] - application - Updating previews.files 58471fe360b2b3624a7b100f with Map(Image -> fid, extractor_id -> test-extractor)
06-Dec-2016 14:30:27 2016-12-06 14:30:27,655 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,656 - [DEBUG  ] - application - api.Files.attachPreview(): No "extractor_id" specified in request, set it to None.  request.body: {}
06-Dec-2016 14:30:27 2016-12-06 14:30:27,659 - [DEBUG  ] - application - attachToFile: extractorId is 'Some(Other)'.
06-Dec-2016 14:30:27 [info]   + contentAsString2000
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06-Dec-2016 14:30:27 ������u������ ���nI���r���j15������>\a���mX������e`������������\���='������6������������k������&������4I������(X"������[<���-���5������������%���V�����������]\$Hd
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06-Dec-2016 14:30:27 ���=���Kos���M���������x4KX���|��������y������|���N������������������'���
06-Dec-2016 14:30:27 ���������u���������������F���8���~Np������1�����_���(|g���������=_U���l���FIS`���L������@RH���t&���������LR������]%������v���G�����������8���������z������������?-���������Z=������������,z)���������������0���i������;X��� �����������2r@���#���SkW���m������D���������'G������9������������A������?�������_ >���������!���m���������Ey �����Y%���vI������|������!T���R������<���������������X���{���1Ls\Fm������p���&        ������y���@���t������������T���Y���9);Y=���f���^"���h������+{ok���v���nY���������������I���Y#p\y������8������i�����g'������u������k������dVYaG*������9w<������������wG���������-���k���!���������cM���\&i M�����0j�����oJ�������������������=���`1���*6H���$���zg<���e<���9c���qG���^x���������l���nd������c������������������2���������.>l���
06-Dec-2016 14:30:27 [info] �����������������������x��� ���1���o5��� 1�����ft������������'*G�����I sY���<?���A������K��� 7���n^Q~�����������`���������n������c_���������y������~���
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06-Dec-2016 14:30:27 [info] ������������kf���q4������.n���������D������d������X���������U,���iq���#,������n������I5cE�����������J���������ol���+-���-#���$���%������W���������9���������������1j������{P������������}���<������`������WV���fo5���-���#���.!(*J 1p0v ���*���������k���&���������������7z���ReH������������PU������`n���F������;s[�����������/r�����eE���f������q�����������������|���������������������{[xUVG������I ������~UbrO,f5h���?���������IaS���HG���4���������������������"];�����o���9���x���������������,������]���        7g ���v���r6���������m���,M���_ Z���:o���4���*��qemXCp���BUTu���E`������5���G������U������n���SI������]CG ���${r���F������I'������E���x���8/d���K��"
06-Dec-2016 14:30:27 ���W ������g���n������8R{u������)���g��������l���"���u���K���${������X���3���������$b���K������[���������������9���x���N���,:������������g������Iz���|(        p]������
06-Dec-2016 14:30:27 [info] g:�����������H������,#K���dm���y���Q������FH�������������������� ���v������~���^��������u@-'������{������;���i��{��������4������,������������������i��������
06-Dec-2016 14:30:27 [info] ��[Er������������������A"������.���������@������}.���+�����2���J��� 3���3Riw���~�����������������1������������)���������e���=�����$���������$w���v���&(������������v�������g9=���>i���������������}J���������������<?���+��������������yn������oyn������^T~���������1���A���������t���������T��������� ��������� ���ZQ���H������
06-Dec-2016 14:30:27 [info] 1���������D���4���"<������7c���x���������Z���������j������z��������O���g;���)���>n�����������������H���������������Y���2���$������W���yLs���+���������6���b���������,���'������k���i#���������W���nS���BWq���������n.���������70������!���$ ���2���Snx ������3���v���������1j-���C4������J%.��e���������z��� ��� ������1$���[�������T���w:Mc���Z������ ���,�����
06-Dec-2016 14:30:27 ~���/���r���o���e���1���0������AZ������������
06-Dec-2016 14:30:27 [info] 61d
06-Dec-2016 14:30:27 [info] m���W���6hdTg������A���I!���q���������������s���������m�����6l���������y6���f������H?u������s������a������x������H���
06-Dec-2016 14:30:27 [info] ���AU������d������s�����E%fu*������'������������'������7������������������g���������������=Fs���eg4���H������,�������l�����9�����E$�����������������������������������K7������������������,���Q������������+�����������������F���'pRc]���~l���        ������������oq���6H�������Ll���~�����<���������n���������T�����������������2������Y���#���[xZV������xFfi���������Gf���������':���x���m6���.c������.C0���m���>������������n-j4���#���Z������j���f���>i���Tq������FG9'9������}���������T������_}���
06-Dec-2016 14:30:27 ���eH���[���q������H���������#���c���������i������Xb���1��������+���P���G c���������%������7������������ !9 ygoL7|������sP���������q
06-Dec-2016 14:30:27 [info] Cms������k�����,*���������c���:ct���_��������������V���d������d5���u;������I���J��������������Z���������Uj���[O ������������\���XHN������2������=���wV���������������������������+?i���t&49���������������������������<_~!{���������e������ ���_\7.]������B���nVb���c���������������E��� ���e���������������H-���nUCgqt���y������A���`���������#���(������h������Uy������y���������Gs�����.IX������������J��������������������wo���<o���"���������$|s���m������$r���{������������"���07���e$���~���}������"tMV���~3��2���������
06-Dec-2016 14:30:27 [info] u�����������1$���3��������[kmp������]������O9���p=������V������������&�����������������~������qU���j
06-Dec-2016 14:30:27 [���������j���N������_���y,_���L��� ���������|M���-Q���b];��@�����T`<���G������RT���g���������N/���6���V���������k���u`���E���������������&�����������������Qu8V������ rz��������^������x���%���o-������0������q���������������������_{���3O���O������#������������f|+���NX���������������B5���F���%������������F���K���i&X������l���z���I������\|���4x���W������t���-�����������y1��� ln������+���������XIw������o���7`���������T~'���Y������n������\���=���A9��������d���V���@���I���&r�����������������Ii���������h"r������ ���pFX���������������J~������������������I$���������q���x������Q���u ���:.8���0q���1]���x���5E���q������������������<���M��������weX���<zg9�����������+���1uw��������������������������fS������������Z���������+\���2001���������������O������^���������w_���r���&��� [��        ���0_��������������        ������������������������������1K�����������'���������<N���\������������]��������:~���k`4��������(���z������+���H���Cp���4���������
06-Dec-2016 14:30:27 [info] ���$Fn���h��}������c������������������S{\���������/���~$xz/���cY����������������)�����z��������������_p:zQEg.������cJ;���[) 1T1������s���0j#[���v���m���a1R������t���<s���:c���z(�����������������^{������������>G�����������Ok}�����������������'���������(������K)��������������e������r������#���>���[���b������������������������W,���OC9h������
06-Dec-2016 14:30:27 [info] 0
06-Dec-2016 14:30:27 [info]
06-Dec-2016 14:30:27 [info] 
06-Dec-2016 14:30:27 [info] - must respond to the uploadMetadata(id: UUID) and getMetadata(id: UUID) function routed by POST/GET /api/previews/:id/metadata
06-Dec-2016 14:30:27 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/test/data/previews/data-test-general.json
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + {
06-Dec-2016 14:30:27 [info]   "Image" : "fid",
06-Dec-2016 14:30:27 [info]   "extractor_id" : "test-extractor"
06-Dec-2016 14:30:27 [info] }
06-Dec-2016 14:30:27 [info]   + Status_Post=200
06-Dec-2016 14:30:27 [info]   + contentType_Post=Some(application/json)
06-Dec-2016 14:30:27 2016-12-06 14:30:27,678 - [DEBUG  ] - application - Updating previews.files 58471fe360b2b3624a7b100f with Map()
06-Dec-2016 14:30:27 2016-12-06 14:30:27,686 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 2016-12-06 14:30:27,701 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:27 [info] - must respond to the attachPreview(file_id:UUID, preview:UUID) function routed by POST /api/files/:file_id/previews/:p_id 
06-Dec-2016 14:30:27 [info]   + Status_Post=200
06-Dec-2016 14:30:27 [info]   + contentType_Post=Some(application/json)
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + {
06-Dec-2016 14:30:27 [info]   "status" : "success"
06-Dec-2016 14:30:27 [info] }
06-Dec-2016 14:30:27 [info] - must respond to the filePreviewsList(id: UUID) function routed by GET /api/files/:file_id/listpreviews
06-Dec-2016 14:30:27 [info]   + Status_get=200
06-Dec-2016 14:30:27 [info]   + contentType_get=Some(application/json)
06-Dec-2016 14:30:27 [info]   + Pretty JSON format
06-Dec-2016 14:30:27 [info]   + [ {
06-Dec-2016 14:30:27 [info]   "id" : "58471fe360b2b3624a7b100f",
06-Dec-2016 14:30:27 [info]   "filename" : "morrowplots-preview.jpg",
06-Dec-2016 14:30:27 [info]   "contentType" : "image/jpeg"
06-Dec-2016 14:30:27 [info] } ]
06-Dec-2016 14:30:28 [info] - must respond to the getPreviews(id: UUID) function routed by GET /api/files/:file_id/getPreviews
06-Dec-2016 14:30:28 [info]   + Status_Get=200
06-Dec-2016 14:30:28 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:28 [info]   + Pretty JSON format
06-Dec-2016 14:30:28 [info]   + [ {
06-Dec-2016 14:30:28 [info]   "file_id" : "58471fe360b2b3624a7b1004",
06-Dec-2016 14:30:28 [info]   "previews" : [ {
06-Dec-2016 14:30:28 [info]     "pv_route" : "/api/previews/58471fe360b2b3624a7b100f",
06-Dec-2016 14:30:28 [info]     "p_main" : "thumbnail-previewer.js",
06-Dec-2016 14:30:28 [info]     "pv_id" : "58471fe360b2b3624a7b100f",
06-Dec-2016 14:30:28 [info]     "p_path" : "/assets/javascripts/previewers/thumbnail",
06-Dec-2016 14:30:28 [info]     "p_id" : "Thumbnail",
06-Dec-2016 14:30:28 [info]     "pv_length" : "9757",
06-Dec-2016 14:30:28 [info]     "pv_contenttype" : "image/jpeg"
06-Dec-2016 14:30:28 [info]   } ]
06-Dec-2016 14:30:28 [info] } ]
06-Dec-2016 14:30:28 2016-12-06 14:30:28,462 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:28 [info] - must respond to the list() function routed by GET /api/previews
06-Dec-2016 14:30:28 [info]   + Status=200
06-Dec-2016 14:30:28 [info]   + contentType=Some(application/json)
06-Dec-2016 14:30:28 [info]   + content[{"id":"58471fe360b2b3624a7b100f","filename":"morrowplots-preview.jpg","contentType":"image/jpeg"}]
06-Dec-2016 14:30:28 2016-12-06 14:30:28,469 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:28 [info] - must respond to the removePreview(id:UUID) function routed by DELETE /api/previews/:id for morrowplots preview file
06-Dec-2016 14:30:28 [info]   + Status_Get=200
06-Dec-2016 14:30:28 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:28 [info]   + Pretty JSON format
06-Dec-2016 14:30:28 [info]   + {
06-Dec-2016 14:30:28 [info]   "status" : "success"
06-Dec-2016 14:30:28 [info] }
06-Dec-2016 14:30:28 2016-12-06 14:30:28,478 - [DEBUG  ] - application - Getting value for tos.date
06-Dec-2016 14:30:28 2016-12-06 14:30:28,491 - [DEBUG  ] - application - Deleting file from indexes morrowplots.jpg
06-Dec-2016 14:30:28 2016-12-06 14:30:28,491 - [DEBUG  ] - application - Deleting file: morrowplots.jpg
06-Dec-2016 14:30:28 [info] - must respond to the removeFile(id:UUID) function routed by DELETE /api/files/:id 
06-Dec-2016 14:30:28 [info]   + Status_Get=200
06-Dec-2016 14:30:28 [info]   + contentType_Get=Some(application/json)
06-Dec-2016 14:30:28 [info]   + Pretty JSON format
06-Dec-2016 14:30:28 [info]   + {
06-Dec-2016 14:30:28 [info]   "status" : "success"
06-Dec-2016 14:30:28 [info] }
06-Dec-2016 14:30:28 [info] ApplicationSpec:
06-Dec-2016 14:30:28 [info] The Application API Spec
06-Dec-2016 14:30:28 [info] - must provide a FakeApplication
06-Dec-2016 14:30:28 [info] - must make the FakeApplication available implicitly
06-Dec-2016 14:30:28 [info] - must start the FakeApplication
06-Dec-2016 14:30:28 [info] - must send 404 on a bad request
06-Dec-2016 14:30:28 2016-12-06 14:30:28,534 - [DEBUG  ] - application - Getting value for display.name
06-Dec-2016 14:30:28 2016-12-06 14:30:28,535 - [DEBUG  ] - application - Getting value for welcome.message
06-Dec-2016 14:30:28 2016-12-06 14:30:28,553 - [DEBUG  ] - application - Getting value for theme
06-Dec-2016 14:30:29 2016-12-06 14:30:29,006 - [DEBUG  ] - application - Getting value for display.name
06-Dec-2016 14:30:29 2016-12-06 14:30:29,019 - [DEBUG  ] - application - [securesocial] bootstrap path = securesocial/bootstrap/css/bootstrap.min.css
06-Dec-2016 14:30:29 2016-12-06 14:30:29,019 - [DEBUG  ] - application - [securesocial] assets controller = controllers.ReverseAssets
06-Dec-2016 14:30:29 2016-12-06 14:30:29,021 - [DEBUG  ] - application - [securesocial] favicon path = securesocial/images/favicon.png
06-Dec-2016 14:30:29 2016-12-06 14:30:29,021 - [DEBUG  ] - application - [securesocial] Jquery path = securesocial/javascripts/jquery-1.7.1.min.js
06-Dec-2016 14:30:29 2016-12-06 14:30:29,022 - [DEBUG  ] - application - [securesocial] custom css path = None
06-Dec-2016 14:30:29 2016-12-06 14:30:29,026 - [DEBUG  ] - application - Getting value for google.analytics
06-Dec-2016 14:30:29 [info] - must render the index page
06-Dec-2016 14:30:29 2016-12-06 14:30:29,034 - [DEBUG  ] - application - Getting value for theme
06-Dec-2016 14:30:29 2016-12-06 14:30:29,568 - [DEBUG  ] - application - Getting value for display.name
06-Dec-2016 14:30:29 2016-12-06 14:30:29,570 - [DEBUG  ] - application - Getting value for google.analytics
06-Dec-2016 14:30:29 [info] - must render index template
06-Dec-2016 14:30:29 2016-12-06 14:30:29,578 - [INFO   ] - application - [securesocial] unloaded event listener SecureSocialEventListener
06-Dec-2016 14:30:29 2016-12-06 14:30:29,579 - [INFO   ] - application - [securesocial] unloaded identity provider: userpass
06-Dec-2016 14:30:29 2016-12-06 14:30:29,579 - [INFO   ] - application - Application shutdown
06-Dec-2016 14:30:29 2016-12-06 14:30:29,580 - [INFO   ] - application - [securesocial] unloaded password hasher bcrypt
06-Dec-2016 14:30:29 2016-12-06 14:30:29,593 - [INFO   ] - play - Shutdown application default Akka system.
06-Dec-2016 14:30:29 2016-12-06 14:30:29,632 - [DEBUG  ] - application - SwaggerPlugin.onStop
06-Dec-2016 14:30:29 [info] ScalaTest
06-Dec-2016 14:30:29 [info] Run completed in 14 seconds, 57 milliseconds.
06-Dec-2016 14:30:29 [info] Total number of tests run: 83
06-Dec-2016 14:30:29 [info] Suites: completed 7, aborted 0
06-Dec-2016 14:30:29 [info] Tests: succeeded 83, failed 0, canceled 0, ignored 0, pending 0
06-Dec-2016 14:30:29 [info] All tests passed.
06-Dec-2016 14:30:29 [info] Passed: Total 6, Failed 0, Errors 0, Passed 6
06-Dec-2016 14:30:29 [success] Total time: 57 s, completed Dec 6, 2016 2:30:29 PM
06-Dec-2016 14:30:30 Finished task 'test' with result: Success
06-Dec-2016 14:30:30
Substituting variable: ${bamboo.buildNumber} with 2
06-Dec-2016 14:30:30 Starting task 'doc' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
06-Dec-2016 14:30:30
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-697-manual-file-extractor-submission-missing - default #2 (CATS-CORE731-JOB1-2)'
... running command line:
/home/bamboo/sbt-0.13.2/bin/sbt doc
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=bugfix/CATS-697-manual-file-extractor-submission-missing
bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_revision_number=b10bbdcf4e8e83c272613bfaec2ba133019d8dac
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE731-JOB1-2
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_15=/bin/sh /home/bamboo/bamboo-agent-home/temp/CATS-CORE731-JOB1-2-ScriptBuildTask-8475181635058771798.sh
JAVA_OPTS=-Dbamboo.buildNumber=2
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_11=/home/bamboo/sbt-0.13.2/bin/sbt clean update
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_planRepository_1_name=clowder
bamboo_repository_132841516_git_branch=bugfix/CATS-697-manual-file-extractor-submission-missing
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
bamboo_buildKey=CATS-CORE731-JOB1
bamboo_capability_system_os=linux
bamboo_shortPlanName=bugfix-CATS-697-manual-file-extractor-submission-missing
bamboo_planRepository_name=clowder
bamboo_buildNumber=2
bamboo_shortJobName=default
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE731-JOB1-2
bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_agentId=106758145
bamboo_planName=Clowder - CORE - bugfix-CATS-697-manual-file-extractor-submission-missing
bamboo_shortPlanKey=CORE731
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_planRepository_revision=b10bbdcf4e8e83c272613bfaec2ba133019d8dac
bamboo_repository_previous_revision_number=feac386125d6991e2a8cc1c1c5f89d8c9dc72f24
bamboo_buildTimeStamp=2016-12-06T14:24:55.192-06:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_planRepository_previousRevision=feac386125d6991e2a8cc1c1c5f89d8c9dc72f24
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=CATS-CORE731-JOB1-2
bamboo_repository_git_branch=bugfix/CATS-697-manual-file-extractor-submission-missing
bamboo_repository_branch_name=bugfix/CATS-697-manual-file-extractor-submission-missing
bamboo_buildPlanName=Clowder - CORE - bugfix-CATS-697-manual-file-extractor-submission-missing - default
bamboo_planRepository_1_revision=b10bbdcf4e8e83c272613bfaec2ba133019d8dac
bamboo_repository_132841516_previous_revision_number=feac386125d6991e2a8cc1c1c5f89d8c9dc72f24
bamboo_capability_system_builder_command_python3=/usr/bin/python3
bamboo_repository_name=clowder
bamboo_repository_132841516_revision_number=b10bbdcf4e8e83c272613bfaec2ba133019d8dac
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_repository_132841516_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_planRepository_branch=bugfix/CATS-697-manual-file-extractor-submission-missing
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_planRepository_1_previousRevision=feac386125d6991e2a8cc1c1c5f89d8c9dc72f24
bamboo_repository_git_username=
bamboo_repository_132841516_git_username=
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_repository_132841516_name=clowder
bamboo_planRepository_1_type=stash-rep
bamboo_planRepository_branchName=bugfix/CATS-697-manual-file-extractor-submission-missing
bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7
bamboo_capability_system_hostname=buildserver-2
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_type=stash-rep
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_7=/home/bamboo/sbt-0.13.2/bin/sbt compile
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_8=/home/bamboo/sbt-0.13.2/bin/sbt test-only integration.APITestSuite
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
bamboo_planKey=CATS-CORE731
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_repository_132841516_branch_name=bugfix/CATS-697-manual-file-extractor-submission-missing
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/CATS-697-manual-file-extractor-submission-missing
06-Dec-2016 14:30:30 Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0
06-Dec-2016 14:30:33 [info] Loading project definition from /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/project
06-Dec-2016 14:30:35 [info] Set current project to clowder (in build file:/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/)
06-Dec-2016 14:30:36 [info] Main Scala API documentation to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/target/scala-2.10/api...
06-Dec-2016 14:31:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/Global.scala:56: postfix operator minutes should be enabled
06-Dec-2016 14:31:20 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:20 [warn] This can be achieved by adding the import clause 'import scala.language.postfixOps'
06-Dec-2016 14:31:20 [warn] or by setting the compiler option -language:postfixOps.
06-Dec-2016 14:31:20 [warn] See the Scala docs for value scala.language.postfixOps for a discussion
06-Dec-2016 14:31:20 [warn] why the feature should be explicitly enabled.
06-Dec-2016 14:31:20 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
06-Dec-2016 14:31:20 [warn]                                                           ^
06-Dec-2016 14:31:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/Global.scala:56: postfix operator minutes should be enabled
06-Dec-2016 14:31:20 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:20 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
06-Dec-2016 14:31:20 [warn]                                                                      ^
06-Dec-2016 14:31:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/Global.scala:62: postfix operator minutes should be enabled
06-Dec-2016 14:31:20 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:20 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
06-Dec-2016 14:31:20 [warn]                                                     ^
06-Dec-2016 14:31:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/Global.scala:62: postfix operator minutes should be enabled
06-Dec-2016 14:31:20 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:20 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
06-Dec-2016 14:31:20 [warn]                                                                ^
06-Dec-2016 14:31:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Admin.scala:183: postfix operator seconds should be enabled
06-Dec-2016 14:31:20 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:20 [warn]     Akka.system.scheduler.scheduleOnce(1 seconds) {
06-Dec-2016 14:31:20 [warn]                                          ^
06-Dec-2016 14:31:22 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Collections.scala:582: a pure expression does nothing in statement position; you may be omitting necessary parentheses
06-Dec-2016 14:31:22 [warn]           return true
06-Dec-2016 14:31:22 [warn]                  ^
06-Dec-2016 14:31:22 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Collections.scala:582: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
06-Dec-2016 14:31:22 [warn]           return true
06-Dec-2016 14:31:22 [warn]           ^
06-Dec-2016 14:31:22 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Collections.scala:584: a pure expression does nothing in statement position; you may be omitting necessary parentheses
06-Dec-2016 14:31:22 [warn]           return false
06-Dec-2016 14:31:22 [warn]                  ^
06-Dec-2016 14:31:22 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Collections.scala:584: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
06-Dec-2016 14:31:22 [warn]           return false
06-Dec-2016 14:31:22 [warn]           ^
06-Dec-2016 14:31:23 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/CurationObjects.scala:126: postfix operator toList should be enabled
06-Dec-2016 14:31:23 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:23 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
06-Dec-2016 14:31:23 [warn]                                                                                                                                ^
06-Dec-2016 14:31:26 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Extractions.scala:15: imported `Files' is permanently hidden by definition of class Files in package api
06-Dec-2016 14:31:26 [warn] import play.api.libs.{Files, MimeTypes}
06-Dec-2016 14:31:26 [warn]                       ^
06-Dec-2016 14:31:27 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Files.scala:465: @deprecated now takes two arguments; see the scaladoc.
06-Dec-2016 14:31:27 [warn]   @deprecated
06-Dec-2016 14:31:27 [warn]    ^
06-Dec-2016 14:31:32 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Geostreams.scala:43: postfix operator tupled should be enabled
06-Dec-2016 14:31:32 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:32 [warn]   ) tupled
06-Dec-2016 14:31:32 [warn]     ^
06-Dec-2016 14:31:32 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Geostreams.scala:51: postfix operator tupled should be enabled
06-Dec-2016 14:31:32 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:32 [warn]   ) tupled
06-Dec-2016 14:31:32 [warn]     ^
06-Dec-2016 14:31:32 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/api/Geostreams.scala:60: postfix operator tupled should be enabled
06-Dec-2016 14:31:32 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:32 [warn]   ) tupled
06-Dec-2016 14:31:32 [warn]     ^
06-Dec-2016 14:31:32 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBInstitutionService.scala:3: imported `Institution' is permanently hidden by definition of object Institution in package mongodb
06-Dec-2016 14:31:32 [warn] import models.Institution
06-Dec-2016 14:31:32 [warn]               ^
06-Dec-2016 14:31:33 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBProjectService.scala:3: imported `Project' is permanently hidden by definition of object Project in package mongodb
06-Dec-2016 14:31:33 [warn] import models.Project
06-Dec-2016 14:31:33 [warn]               ^
06-Dec-2016 14:31:36 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/controllers/CurationObjects.scala:12: imported `Files' is permanently hidden by definition of class Files in package controllers
06-Dec-2016 14:31:36 [warn] import play.api.libs.Files
06-Dec-2016 14:31:36 [warn]                      ^
06-Dec-2016 14:31:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/controllers/CurationObjects.scala:493: postfix operator toList should be enabled
06-Dec-2016 14:31:37 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:37 [warn]       metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
06-Dec-2016 14:31:37 [warn]                                                                                                                          ^
06-Dec-2016 14:31:37 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/controllers/CurationObjects.scala:723: postfix operator toList should be enabled
06-Dec-2016 14:31:37 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:37 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
06-Dec-2016 14:31:37 [warn]                                                                                                                                ^
06-Dec-2016 14:31:39 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/controllers/Registration.scala:13: imported `Registration' is permanently hidden by definition of class Registration in package controllers
06-Dec-2016 14:31:39 [warn] import securesocial.controllers.{ProviderController, Registration, TemplatesPlugin}
06-Dec-2016 14:31:39 [warn]                                                      ^
06-Dec-2016 14:31:39 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/controllers/Registration.scala:57: reflective access of structural type member value currentHasher should be enabled
06-Dec-2016 14:31:39 [warn] by making the implicit value scala.language.reflectiveCalls visible.
06-Dec-2016 14:31:39 [warn] This can be achieved by adding the import clause 'import scala.language.reflectiveCalls'
06-Dec-2016 14:31:39 [warn] or by setting the compiler option -language:reflectiveCalls.
06-Dec-2016 14:31:39 [warn] See the Scala docs for value scala.language.reflectiveCalls for a discussion
06-Dec-2016 14:31:39 [warn] why the feature should be explicitly enabled.
06-Dec-2016 14:31:39 [warn]                 passwordInfo = Some(Registry.hashers.currentHasher.hash(info.password))
06-Dec-2016 14:31:39 [warn]                                                      ^
06-Dec-2016 14:31:40 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/controllers/Spaces.scala:270: postfix operator toMap should be enabled
06-Dec-2016 14:31:40 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:40 [warn]         val roleDescription = users.listRoles() map (t => t.name -> t.description) toMap
06-Dec-2016 14:31:40 [warn]                                                                                    ^
06-Dec-2016 14:31:43 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/models/UUID.scala:36: implicit conversion method stringToUUID should be enabled
06-Dec-2016 14:31:43 [warn] by making the implicit value scala.language.implicitConversions visible.
06-Dec-2016 14:31:43 [warn] This can be achieved by adding the import clause 'import scala.language.implicitConversions'
06-Dec-2016 14:31:43 [warn] or by setting the compiler option -language:implicitConversions.
06-Dec-2016 14:31:43 [warn] See the Scala docs for value scala.language.implicitConversions for a discussion
06-Dec-2016 14:31:43 [warn] why the feature should be explicitly enabled.
06-Dec-2016 14:31:43 [warn]   implicit def stringToUUID(s: String) = UUID(s)
06-Dec-2016 14:31:43 [warn]                ^
06-Dec-2016 14:31:43 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/models/UUID.scala:37: implicit conversion method uuidToObjectId should be enabled
06-Dec-2016 14:31:43 [warn] by making the implicit value scala.language.implicitConversions visible.
06-Dec-2016 14:31:43 [warn]   implicit def uuidToObjectId(uuid: UUID) = new ObjectId(uuid.stringify)
06-Dec-2016 14:31:43 [warn]                ^
06-Dec-2016 14:31:43 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/models/UUID.scala:38: implicit conversion method objectIdToUUID should be enabled
06-Dec-2016 14:31:43 [warn] by making the implicit value scala.language.implicitConversions visible.
06-Dec-2016 14:31:43 [warn]   implicit def objectIdToUUID(objectId: ObjectId) = UUID(objectId.toString)
06-Dec-2016 14:31:43 [warn]                ^
06-Dec-2016 14:31:43 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/models/User.scala:101: implicit conversion method userToMiniUser should be enabled
06-Dec-2016 14:31:43 [warn] by making the implicit value scala.language.implicitConversions visible.
06-Dec-2016 14:31:43 [warn]   implicit def userToMiniUser(x: User): MiniUser = x.getMiniUser
06-Dec-2016 14:31:43 [warn]                ^
06-Dec-2016 14:31:44 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/PolyglotPlugin.scala:83: postfix operator seconds should be enabled
06-Dec-2016 14:31:44 [warn] by making the implicit value scala.language.postfixOps visible.
06-Dec-2016 14:31:44 [warn]           akka.pattern.after(3 seconds, using = Akka.system.scheduler)(checkForFileAndDownload((triesLeft - 1), url, outputStream))
06-Dec-2016 14:31:44 [warn]                                ^
06-Dec-2016 14:31:45 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoContext.scala:253: implicit conversion method dbObjectToString should be enabled
06-Dec-2016 14:31:45 [warn] by making the implicit value scala.language.implicitConversions visible.
06-Dec-2016 14:31:45 [warn]   implicit def dbObjectToString(dbObject: DBObject): String = {
06-Dec-2016 14:31:45 [warn]                ^
06-Dec-2016 14:31:46 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBCommentService.scala:3: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
06-Dec-2016 14:31:46 [warn] import models.{UUID, Comment}
06-Dec-2016 14:31:46 [warn]                      ^
06-Dec-2016 14:31:48 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBTagService.scala:7: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
06-Dec-2016 14:31:48 [warn] import models.{Tag, UUID}
06-Dec-2016 14:31:48 [warn]                ^
06-Dec-2016 14:31:48 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBExtractionRequestsService.scala:20: imported `MongoSalatPlugin' is permanently hidden by definition of class MongoSalatPlugin in package mongodb
06-Dec-2016 14:31:48 [warn] import services.mongodb.MongoSalatPlugin
06-Dec-2016 14:31:48 [warn]                         ^
06-Dec-2016 14:31:49 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBExtractionService.scala:4: imported `Extraction' is permanently hidden by definition of object Extraction in package mongodb
06-Dec-2016 14:31:49 [warn] import models.{UUID, Extraction}
06-Dec-2016 14:31:49 [warn]                      ^
06-Dec-2016 14:31:49 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBExtractionService.scala:13: imported `WebPageResource' is permanently hidden by definition of object WebPageResource in package mongodb
06-Dec-2016 14:31:49 [warn] import models.WebPageResource
06-Dec-2016 14:31:49 [warn]               ^
06-Dec-2016 14:31:52 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBSectionService.scala:5: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
06-Dec-2016 14:31:52 [warn] import models.{UUID, Tag, Comment, Section, User}
06-Dec-2016 14:31:52 [warn]                      ^
06-Dec-2016 14:31:52 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBSectionService.scala:5: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
06-Dec-2016 14:31:52 [warn] import models.{UUID, Tag, Comment, Section, User}
06-Dec-2016 14:31:52 [warn]                           ^
06-Dec-2016 14:31:52 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBSpaceService.scala:19: imported `Collection' is permanently hidden by definition of object Collection in package mongodb
06-Dec-2016 14:31:52 [warn] import models.Collection
06-Dec-2016 14:31:52 [warn]               ^
06-Dec-2016 14:31:52 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/mongodb/MongoDBSpaceService.scala:20: imported `Dataset' is permanently hidden by definition of object Dataset in package mongodb
06-Dec-2016 14:31:52 [warn] import models.Dataset
06-Dec-2016 14:31:52 [warn]               ^
06-Dec-2016 14:32:17 model contains 854 documentable templates
06-Dec-2016 14:32:22 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/app/services/irods/IRODSPlugin.scala:9: Tag '@date' is not recognised
06-Dec-2016 14:32:22 [warn] /**
06-Dec-2016 14:32:22 [warn] ^
06-Dec-2016 14:32:37 [warn] 39 warnings found
06-Dec-2016 14:32:37 [info] Main Scala API documentation successful.
06-Dec-2016 14:32:37 [success] Total time: 122 s, completed Dec 6, 2016 2:32:37 PM
06-Dec-2016 14:32:37 Finished task 'doc' with result: Success
06-Dec-2016 14:32:37 Starting task 'sphinx' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
06-Dec-2016 14:32:37
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-697-manual-file-extractor-submission-missing - default #2 (CATS-CORE731-JOB1-2)'
... running command line:
/usr/bin/sphinx-build -b html -d _build/doctrees . _build/html
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/doc/src/sphinx
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bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
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bamboo_capability_system_builder_command_python3=/usr/bin/python3
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bamboo_capability_system_software_mongo=/usr/bin/mongo
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bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
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bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_7=/home/bamboo/sbt-0.13.2/bin/sbt compile
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bamboo_planRepository_1_branchName=bugfix/CATS-697-manual-file-extractor-submission-missing
06-Dec-2016 14:32:38 Running Sphinx v1.2.2
06-Dec-2016 14:32:38 loading pickled environment... done
06-Dec-2016 14:32:38 building [html]: targets for 0 source files that are out of date
06-Dec-2016 14:32:38 updating environment: 0 added, 0 changed, 0 removed
06-Dec-2016 14:32:38 looking for now-outdated files... none found
06-Dec-2016 14:32:38 no targets are out of date.
06-Dec-2016 14:32:38 Finished task 'sphinx' with result: Success
06-Dec-2016 14:32:38
Substituting variable: ${bamboo.buildNumber} with 2
06-Dec-2016 14:32:38 Starting task 'dist' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
06-Dec-2016 14:32:38
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-697-manual-file-extractor-submission-missing - default #2 (CATS-CORE731-JOB1-2)'
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/home/bamboo/sbt-0.13.2/bin/sbt dist
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
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06-Dec-2016 14:32:38 Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=384M; support was removed in 8.0
06-Dec-2016 14:32:42 [info] Loading project definition from /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/project
06-Dec-2016 14:32:43 [info] Set current project to clowder (in build file:/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/)
06-Dec-2016 14:32:43 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/target/scala-2.10/clowder_2.10-0.9.x-SNAPSHOT-sources.jar ...
06-Dec-2016 14:32:44 [info] Done packaging.
06-Dec-2016 14:32:44 [info] Wrote /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/target/scala-2.10/clowder_2.10-0.9.x-SNAPSHOT.pom
06-Dec-2016 14:32:45 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/target/scala-2.10/clowder_2.10-0.9.x-SNAPSHOT-javadoc.jar ...
06-Dec-2016 14:32:46 [info] Done packaging.
06-Dec-2016 14:32:46 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/target/scala-2.10/clowder_2.10-0.9.x-SNAPSHOT.jar ...
06-Dec-2016 14:32:50 [info] Done packaging.
06-Dec-2016 14:33:04 [info]
06-Dec-2016 14:33:04 [info] Your package is ready in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1/target/universal/clowder-0.9.x-SNAPSHOT.zip
06-Dec-2016 14:33:04 [info]
06-Dec-2016 14:33:04 [success] Total time: 20 s, completed Dec 6, 2016 2:33:04 PM
06-Dec-2016 14:33:04 Finished task 'dist' with result: Success
06-Dec-2016 14:33:04 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
06-Dec-2016 14:33:04
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-697-manual-file-extractor-submission-missing - default #2 (CATS-CORE731-JOB1-2)'
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bamboo_planRepository_1_previousRevision=feac386125d6991e2a8cc1c1c5f89d8c9dc72f24
bamboo_repository_git_username=
bamboo_repository_132841516_git_username=
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_repository_132841516_name=clowder
bamboo_planRepository_1_type=stash-rep
bamboo_planRepository_branchName=bugfix/CATS-697-manual-file-extractor-submission-missing
bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7
bamboo_capability_system_hostname=buildserver-2
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_type=stash-rep
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_7=/home/bamboo/sbt-0.13.2/bin/sbt compile
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_9=/home/bamboo/sbt-0.13.2/bin/sbt doc
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_8=/home/bamboo/sbt-0.13.2/bin/sbt test-only integration.APITestSuite
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1
bamboo_planKey=CATS-CORE731
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_repository_132841516_branch_name=bugfix/CATS-697-manual-file-extractor-submission-missing
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/CATS-697-manual-file-extractor-submission-missing
06-Dec-2016 14:33:06 Sending build context to Docker daemon 557.1 kB
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06-Dec-2016 14:33:09
06-Dec-2016 14:33:09 Step 1 : FROM java:8-jre
06-Dec-2016 14:33:10 8-jre: Pulling from library/java
06-Dec-2016 14:33:10 Digest: sha256:2c8f135417f12c60bd0e098022290107ac73f94837e754edc9e01c3149fa4ded
06-Dec-2016 14:33:10 Status: Image is up to date for java:8-jre
06-Dec-2016 14:33:10 ---> b13ebf1a4999
06-Dec-2016 14:33:10 Step 2 : MAINTAINER Rob Kooper <kooper@illinois.edu>
06-Dec-2016 14:33:10 ---> Using cache
06-Dec-2016 14:33:10 ---> 18b825d42143
06-Dec-2016 14:33:10 Step 3 : EXPOSE 9000
06-Dec-2016 14:33:10 ---> Using cache
06-Dec-2016 14:33:10 ---> b35ba6fc980d
06-Dec-2016 14:33:10 Step 4 : ENV CLOWDER_CONTEXT "/" CLOWDER_ADMINS "" MONGO_URI "" SMTP_HOST "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_URI "" RABBITMQ_MGMT_PORT "" ELASTICSEARCH_SERVICE_CLUSTERNAME "clowder" ELASTICSEARCH_SERVICE_SERVER "" ELASTICSEARCH_SERVICE_PORT "" TOOLMANAGER_URI ""
06-Dec-2016 14:33:10 ---> Using cache
06-Dec-2016 14:33:10 ---> d1b122e18c4a
06-Dec-2016 14:33:10 Step 5 : RUN useradd -s /bin/bash clowder
06-Dec-2016 14:33:10 ---> Using cache
06-Dec-2016 14:33:10 ---> cbd57bcfe366
06-Dec-2016 14:33:10 Step 6 : COPY files entrypoint.sh /home/clowder/
06-Dec-2016 14:33:15 ---> 29638c3ce1f3
06-Dec-2016 14:33:15 Removing intermediate container cf6463a07980
06-Dec-2016 14:33:15 Step 7 : RUN mkdir -p /home/clowder/clowder/custom /home/clowder/clowder/logs     && chown clowder /home/clowder/clowder /home/clowder/clowder/custom /home/clowder/clowder/logs
06-Dec-2016 14:33:15 ---> Running in 5dda113afbb4
06-Dec-2016 14:33:15 ---> 64e072d037b3
06-Dec-2016 14:33:15 Removing intermediate container 5dda113afbb4
06-Dec-2016 14:33:15 Step 8 : ENTRYPOINT /home/clowder/entrypoint.sh
06-Dec-2016 14:33:16 ---> Running in 089ecb5ebc6a
06-Dec-2016 14:33:16 ---> 9b7b6f4926b4
06-Dec-2016 14:33:16 Removing intermediate container 089ecb5ebc6a
06-Dec-2016 14:33:16 Step 9 : CMD server
06-Dec-2016 14:33:16 ---> Running in 5256f75fcd25
06-Dec-2016 14:33:16 ---> 69e13443c97b
06-Dec-2016 14:33:16 Removing intermediate container 5256f75fcd25
06-Dec-2016 14:33:16 Step 10 : USER clowder
06-Dec-2016 14:33:16 ---> Running in d93d7c4158d5
06-Dec-2016 14:33:16 ---> c1fb15dc57a6
06-Dec-2016 14:33:16 Removing intermediate container d93d7c4158d5
06-Dec-2016 14:33:16 Successfully built c1fb15dc57a6
06-Dec-2016 14:33:16 Sending build context to Docker daemon 22.02 kB
06-Dec-2016 14:33:16
06-Dec-2016 14:33:16 Step 1 : FROM ubuntu
06-Dec-2016 14:33:16 latest: Pulling from library/ubuntu
06-Dec-2016 14:33:16 Digest: sha256:3b64c309deae7ab0f7dbdd42b6b326261ccd6261da5d88396439353162703fb5
06-Dec-2016 14:33:16 Status: Image is up to date for ubuntu:latest
06-Dec-2016 14:33:16 ---> 4ca3a192ff2a
06-Dec-2016 14:33:16 Step 2 : RUN apt-get -y update     && apt-get -y install curl unzip docker.io python python-dev python-pip     && pip install flask-restful     && pip install arrow     && apt-get clean all     && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*     ;
06-Dec-2016 14:33:16 ---> Using cache
06-Dec-2016 14:33:16 ---> 2fee608e98fa
06-Dec-2016 14:33:16 Step 3 : COPY FILES.toolserver /
06-Dec-2016 14:33:16 ---> Using cache
06-Dec-2016 14:33:16 ---> c73e89a351f3
06-Dec-2016 14:33:16 Step 4 : ENV TOOLSERVER_PORT 8082
06-Dec-2016 14:33:16 ---> Using cache
06-Dec-2016 14:33:16 ---> ca8e3cb3fcc5
06-Dec-2016 14:33:16 Step 5 : CMD /usr/local/bin/usage
06-Dec-2016 14:33:16 ---> Using cache
06-Dec-2016 14:33:16 ---> 902e38ee6eda
06-Dec-2016 14:33:16 Successfully built 902e38ee6eda
06-Dec-2016 14:33:16 Tagged clowder toolserver with local
06-Dec-2016 14:33:17 Tagged clowder toolserver with local
06-Dec-2016 14:33:17 Untagged: toolserver-6333:latest
06-Dec-2016 14:33:17 Untagged: clowder-6333:latest
06-Dec-2016 14:33:17 Finished task 'docker build' with result: Success
06-Dec-2016 14:33:17 Starting task 'junit' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
06-Dec-2016 14:33:17 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE731-JOB1...
06-Dec-2016 14:33:17 Finished task 'junit' with result: Success
06-Dec-2016 14:33:17 Running post build plugin 'Docker Container Cleanup'
06-Dec-2016 14:33:17 Running post build plugin 'NCover Results Collector'
06-Dec-2016 14:33:17 Running post build plugin 'Clover Results Collector'
06-Dec-2016 14:33:17 Running post build plugin 'npm Cache Cleanup'
06-Dec-2016 14:33:17 Running post build plugin 'Artifact Copier'
06-Dec-2016 14:33:17 Publishing an artifact: dist
06-Dec-2016 14:33:26 Finished publishing of artifact Shared artifact: [dist], pattern: [clowder-*.zip] anchored at: [target/universal] in 9.059 s
06-Dec-2016 14:33:26 Publishing an artifact: scaladoc
06-Dec-2016 14:33:28 Finished publishing of artifact Shared artifact: [scaladoc], pattern: [**/*] anchored at: [target/scala-2.10/api] in 1.774 s
06-Dec-2016 14:33:28 Publishing an artifact: manual
06-Dec-2016 14:33:28 Finished publishing of artifact Shared artifact: [manual], pattern: [**/*] anchored at: [doc/src/sphinx/_build/html] in 304.6 ms
06-Dec-2016 14:33:28 Finalising the build...
06-Dec-2016 14:33:28 Stopping timer.
06-Dec-2016 14:33:28 Build CATS-CORE731-JOB1-2 completed.
06-Dec-2016 14:33:28 Running on server: post build plugin 'NCover Results Collector'
06-Dec-2016 14:33:28 Running on server: post build plugin 'Build Hanging Detection Configuration'
06-Dec-2016 14:33:28 Running on server: post build plugin 'Clover Delta Calculator'
06-Dec-2016 14:33:28 Running on server: post build plugin 'Maven Dependencies Postprocessor'
06-Dec-2016 14:33:28 All post build plugins have finished
06-Dec-2016 14:33:28 Generating build results summary...
06-Dec-2016 14:33:28 Saving build results to disk...
06-Dec-2016 14:33:28 Logging substituted variables...
06-Dec-2016 14:33:28 Indexing build results...
06-Dec-2016 14:33:28 Finished building CATS-CORE731-JOB1-2.