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  1. Default Stage

Build log

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31-May-2017 14:32:48 [info]   "tags" : [ "Test 2", "Cool Stuff", "New Technology" ],
31-May-2017 14:32:48 [info]   "extractor_id" : "ncsa.cv.face"
31-May-2017 14:32:48 [info] }
31-May-2017 14:32:48 [info]   + Status_Get=200
31-May-2017 14:32:48 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:48 [info]   + content{"status":"success"}
31-May-2017 14:32:48 2017-05-31 14:32:48,874 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:48 2017-05-31 14:32:48,879 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:48 2017-05-31 14:32:48,880 - [DEBUG  ] - application - Removing tag {"tags":["Dataset"]}
31-May-2017 14:32:48 [info] - must respond to the removeTag(id: UUID) function routed by POST /api/datasets/:id/removeTag
31-May-2017 14:32:48 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:48 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/test/data/datasets/dataset-test-tags-remove-one.json
31-May-2017 14:32:48 [info]   + Pretty JSON format
31-May-2017 14:32:48 [info]   + {
31-May-2017 14:32:48 [info]   "tags" : [ "Dataset" ]
31-May-2017 14:32:48 [info] }
31-May-2017 14:32:48 [info]   + Status_Get=200
31-May-2017 14:32:48 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:48 [info]   + content""
31-May-2017 14:32:48 2017-05-31 14:32:48,883 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:48 2017-05-31 14:32:48,889 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:48 2017-05-31 14:32:48,890 - [DEBUG  ] - application - Adding metadata to dataset 592f1a60cb0e4b7d14db96ad
31-May-2017 14:32:48 [info] - must respond to the addMetadata(id: UUID) function routed by POST /api/datasets/:id/metadata
31-May-2017 14:32:48 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:48 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/test/data/datasets/dataset-test-general.json
31-May-2017 14:32:48 [info]   + Pretty JSON format
31-May-2017 14:32:48 [info]   + {
31-May-2017 14:32:48 [info]   "archive" : {
31-May-2017 14:32:48 [info]     "exclude" : [ "/foo/bar", "baz", "/*.test", "!/foo/bar/baz" ]
31-May-2017 14:32:48 [info]   },
31-May-2017 14:32:48 [info]   "Image" : "fid",
31-May-2017 14:32:48 [info]   "Format" : "JPEG(JointPhotographicExpertsGroupJFIFformat)",
31-May-2017 14:32:48 [info]   "Reason" : "DataSet Test Suite"
31-May-2017 14:32:48 [info] }
31-May-2017 14:32:48 [info]   + Status_Get=200
31-May-2017 14:32:48 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:48 2017-05-31 14:32:48,896 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:48 2017-05-31 14:32:48,901 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:48 2017-05-31 14:32:48,902 - [DEBUG  ] - application - Adding user metadata to dataset 592f1a60cb0e4b7d14db96ad
31-May-2017 14:32:48 2017-05-31 14:32:48,902 - [DEBUG  ] - application - Adding/modifying user metadata to dataset 592f1a60cb0e4b7d14db96ad : {"Description":"Dataset Zip file Json","Items":"Image files","Other":"Pretty Cool Huh?"}
31-May-2017 14:32:48 2017-05-31 14:32:48,906 - [DEBUG  ] - application - userdfSPARQLStore not enabled
31-May-2017 14:32:48 [info] - must respond to the addUserMetadata(id: UUID) function routed by POST /api/datasets/:id/usermetadata
31-May-2017 14:32:48 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:48 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/test/data/datasets/dataset-test-user.json
31-May-2017 14:32:48 [info]   + Pretty JSON format
31-May-2017 14:32:48 [info]   + {
31-May-2017 14:32:48 [info]   "Description" : "Dataset Zip file Json",
31-May-2017 14:32:48 [info]   "Items" : "Image files",
31-May-2017 14:32:48 [info]   "Other" : "Pretty Cool Huh?"
31-May-2017 14:32:48 [info] }
31-May-2017 14:32:48 [info]   + Status_Get=200
31-May-2017 14:32:48 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:48 2017-05-31 14:32:48,914 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:48 2017-05-31 14:32:48,916 - [DEBUG  ] - application - retmd: { "Description" : "Dataset Zip file Json" , "Items" : "Image files" , "Other" : "Pretty Cool Huh?"}
31-May-2017 14:32:48 [info] - must respond to the getUserMetadataJSON(id: UUID) function routed by GET /api/datasets/:id/usermetadata
31-May-2017 14:32:48 [info]   + Status_Get=200
31-May-2017 14:32:48 [info]   + contentType_Get=Some(text/plain)
31-May-2017 14:32:48 [info]   + Pretty JSON format
31-May-2017 14:32:48 [info]   + {
31-May-2017 14:32:48 [info]   "Description" : "Dataset Zip file Json",
31-May-2017 14:32:48 [info]   "Items" : "Image files",
31-May-2017 14:32:48 [info]   "Other" : "Pretty Cool Huh?"
31-May-2017 14:32:48 [info] }
31-May-2017 14:32:48 2017-05-31 14:32:48,930 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:48 [info] - must respond to the getTechnicalMetadataJSON(id: UUID) function routed by GET /api/datasets/:id/technicalmetadatajson
31-May-2017 14:32:48 [info]   + Status_Get=200
31-May-2017 14:32:48 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:48 [info]   + Pretty JSON format
31-May-2017 14:32:48 [info]   + [ {
31-May-2017 14:32:48 [info]   "archive" : {
31-May-2017 14:32:48 [info]     "exclude" : [ "/foo/bar", "baz", "/*.test", "!/foo/bar/baz" ]
31-May-2017 14:32:48 [info]   },
31-May-2017 14:32:48 [info]   "Image" : "fid",
31-May-2017 14:32:48 [info]   "Format" : "JPEG(JointPhotographicExpertsGroupJFIFformat)",
31-May-2017 14:32:48 [info]   "Reason" : "DataSet Test Suite"
31-May-2017 14:32:48 [info] } ]
31-May-2017 14:32:48 2017-05-31 14:32:48,943 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:48 2017-05-31 14:32:48,947 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:48 2017-05-31 14:32:48,949 - [DEBUG  ] - application - Searching datasets' metadata for search tree.
31-May-2017 14:32:48 2017-05-31 14:32:48,949 - [DEBUG  ] - application - thejsson: {"Reason":".*Suite.*"}
31-May-2017 14:32:48 2017-05-31 14:32:48,950 - [DEBUG  ] - application - top: {Reason=.*Suite.*}
31-May-2017 14:32:48 2017-05-31 14:32:48,950 - [DEBUG  ] - application - req: {Reason=.*Suite.*}
31-May-2017 14:32:48 2017-05-31 14:32:48,952 - [DEBUG  ] - application - thequery: { "$and" : [ { "$or" : [ { "userMetadata.Reason" : ".*Suite.*"} , { "metadata.Reason" : ".*Suite.*"} , { "datasetXmlMetadata.xmlMetadata.Reason" : ".*Suite.*"}]}]}
31-May-2017 14:32:48 2017-05-31 14:32:48,953 - [DEBUG  ] - application - Search completed. Returning datasets list.
31-May-2017 14:32:48 2017-05-31 14:32:48,954 - [DEBUG  ] - application - thelist: []
31-May-2017 14:32:48 [info] - must respond to the searchDatasetsGeneralMetadata() function routed by POST /api/datasets/searchmetadata 
31-May-2017 14:32:48 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:48 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/test/data/datasets/dataset-search-general.json
31-May-2017 14:32:48 [info]   + Pretty JSON format
31-May-2017 14:32:48 [info]   + {
31-May-2017 14:32:48 [info]   "Reason" : ".*Suite.*"
31-May-2017 14:32:48 [info] }
31-May-2017 14:32:48 [info]   + Status=200
31-May-2017 14:32:48 [info]   + contentType=Some(application/json)
31-May-2017 14:32:48 [info]   + content[]
31-May-2017 14:32:48 2017-05-31 14:32:48,958 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:48 2017-05-31 14:32:48,963 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:48 2017-05-31 14:32:48,964 - [DEBUG  ] - application - Searching datasets' user metadata for search tree.
31-May-2017 14:32:48 2017-05-31 14:32:48,965 - [DEBUG  ] - application - thejsson: {"Other":".*Pretty Cool.*"}
31-May-2017 14:32:48 2017-05-31 14:32:48,965 - [DEBUG  ] - application - top: {Other=.*Pretty Cool.*}
31-May-2017 14:32:48 2017-05-31 14:32:48,965 - [DEBUG  ] - application - req: {Other=.*Pretty Cool.*}
31-May-2017 14:32:48 2017-05-31 14:32:48,966 - [DEBUG  ] - application - thequery: { "$and" : [ { "userMetadata.Other" : ".*Pretty Cool.*"}]}
31-May-2017 14:32:48 2017-05-31 14:32:48,966 - [DEBUG  ] - application - Search completed. Returning datasets list.
31-May-2017 14:32:48 2017-05-31 14:32:48,967 - [DEBUG  ] - application - thelist: []
31-May-2017 14:32:48 [info] - must respond to the searchDatasetsUserMetadata() function routed by POST /api/datasets/searchmetadata 
31-May-2017 14:32:48 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:48 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/test/data/datasets/dataset-search-user.json
31-May-2017 14:32:48 [info]   + Pretty JSON format
31-May-2017 14:32:48 [info]   + {
31-May-2017 14:32:48 [info]   "Other" : ".*Pretty Cool.*"
31-May-2017 14:32:48 [info] }
31-May-2017 14:32:48 [info]   + Status=200
31-May-2017 14:32:48 [info]   + contentType=Some(application/json)
31-May-2017 14:32:48 [info]   + content[]
31-May-2017 14:32:48 2017-05-31 14:32:48,971 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:48 2017-05-31 14:32:48,973 - [DEBUG  ] - application - userdfSPARQLStore not enabled
31-May-2017 14:32:48 2017-05-31 14:32:48,984 - [DEBUG  ] - application - Removing XML metadata belonging to file 592f1a60cb0e4b7d14db9699 from dataset 592f1a60cb0e4b7d14db96ad.
31-May-2017 14:32:49 2017-05-31 14:32:49,001 - [ERROR  ] - application - File not found: 592f1a60cb0e4b7d14db9699
31-May-2017 14:32:49 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id 
31-May-2017 14:32:49 [info]   + Status_Get=200
31-May-2017 14:32:49 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "status" : "success"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 [info] CollectionsAPIAppSpec:
31-May-2017 14:32:49 [info] The Collections API Spec
31-May-2017 14:32:49 [info] - must provide a FakeApplication
31-May-2017 14:32:49 [info] - must make the FakeApplication available implicitly
31-May-2017 14:32:49 2017-05-31 14:32:49,007 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:49 [info] - must start the FakeApplication
31-May-2017 14:32:49 [info] The Collections API Spec
31-May-2017 14:32:49 2017-05-31 14:32:49,035 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,036 - [DEBUG  ] - application - Creating new collection
31-May-2017 14:32:49 [info] - must respond to the createCollection() function routed by POST /api/collections for Collection 1
31-May-2017 14:32:49 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:49 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/test/data/collections/data-test-collection.json
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "description" : "Collection 1 Tests Description",
31-May-2017 14:32:49 [info]   "name" : "Collection 1 Test Suite",
31-May-2017 14:32:49 [info]   "space" : "default"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + content{"id":"592f1a61cb0e4b7d14db96c5"}
31-May-2017 14:32:49 2017-05-31 14:32:49,054 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:49 2017-05-31 14:32:49,058 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,058 - [DEBUG  ] - application - Creating new collection
31-May-2017 14:32:49 [info] - must respond to the createCollection() function routed by POST /api/collections for Collection 2
31-May-2017 14:32:49 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:49 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/test/data/collections/data-test-collection-1.json
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "description" : "Collection 2 Tests Description",
31-May-2017 14:32:49 [info]   "name" : "Collection 2 Test Suite",
31-May-2017 14:32:49 [info]   "space" : "default"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + content{"id":"592f1a61cb0e4b7d14db96c6"}
31-May-2017 14:32:49 2017-05-31 14:32:49,062 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:49 2017-05-31 14:32:49,140 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,144 - [DEBUG  ] - application - created file 592f1a61cb0e4b7d14db96c8
31-May-2017 14:32:49 2017-05-31 14:32:49,144 - [DEBUG  ] - application - Uploading file dataset-image.zip
31-May-2017 14:32:49 2017-05-31 14:32:49,153 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,154 - [DEBUG  ] - application - --- API Creating new dataset ----
31-May-2017 14:32:49 2017-05-31 14:32:49,156 - [ERROR  ] - application - Dataset not found: 592f1a61cb0e4b7d14db96d2
31-May-2017 14:32:49 2017-05-31 14:32:49,160 - [DEBUG  ] - application - ----- Adding file to dataset completed
31-May-2017 14:32:49 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 1 Creation
31-May-2017 14:32:49 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + contentAsString{"id":"592f1a61cb0e4b7d14db96d2"}
31-May-2017 14:32:49 2017-05-31 14:32:49,165 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:49 2017-05-31 14:32:49,179 - [DEBUG  ] - application - Uploading Completed
31-May-2017 14:32:49 2017-05-31 14:32:49,253 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,257 - [DEBUG  ] - application - created file 592f1a61cb0e4b7d14db96e0
31-May-2017 14:32:49 2017-05-31 14:32:49,258 - [DEBUG  ] - application - Uploading file dataset-image-1.zip
31-May-2017 14:32:49 2017-05-31 14:32:49,261 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,262 - [DEBUG  ] - application - --- API Creating new dataset ----
31-May-2017 14:32:49 2017-05-31 14:32:49,264 - [ERROR  ] - application - Dataset not found: 592f1a61cb0e4b7d14db96e8
31-May-2017 14:32:49 2017-05-31 14:32:49,267 - [DEBUG  ] - application - ----- Adding file to dataset completed
31-May-2017 14:32:49 [info] - must respond to the createDataset() function routed by POST /api/datasets for Dataset 2 Creation
31-May-2017 14:32:49 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + contentAsString{"id":"592f1a61cb0e4b7d14db96e8"}
31-May-2017 14:32:49 2017-05-31 14:32:49,273 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,275 - [DEBUG  ] - application - Adding dataset 592f1a61cb0e4b7d14db96d2 to collection 592f1a61cb0e4b7d14db96c5
31-May-2017 14:32:49 2017-05-31 14:32:49,280 - [DEBUG  ] - application - Adding dataset to collection completed
31-May-2017 14:32:49 2017-05-31 14:32:49,282 - [DEBUG  ] - application - Uploading Completed
31-May-2017 14:32:49 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 1
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + contentAsString{"datasetsInCollection":1}
31-May-2017 14:32:49 2017-05-31 14:32:49,288 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 [info] - must respond to the listInCollection(coll_id: UUID) function routed by GET /api/collections/:coll_id/getDatasets
31-May-2017 14:32:49 [info]   + Status_Get=200
31-May-2017 14:32:49 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + [ {
31-May-2017 14:32:49 [info]   "id" : "592f1a61cb0e4b7d14db96d2",
31-May-2017 14:32:49 [info]   "name" : "Dataset 1 API Test Creation",
31-May-2017 14:32:49 [info]   "description" : "Part 1 of Dataset API Test Suite",
31-May-2017 14:32:49 [info]   "created" : "Wed May 31 14:32:49 CDT 2017",
31-May-2017 14:32:49 [info]   "thumbnail" : "None",
31-May-2017 14:32:49 [info]   "authorId" : "000000000000000000000000",
31-May-2017 14:32:49 [info]   "spaces" : [ ]
31-May-2017 14:32:49 [info] } ]
31-May-2017 14:32:49 2017-05-31 14:32:49,297 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 [info] - must respond to the listOutsideCollection(coll_id: UUID) function routed by GET /api/datasets/listOutsideCollection/:coll_id
31-May-2017 14:32:49 [info]   + Status_Get=200
31-May-2017 14:32:49 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + [ {
31-May-2017 14:32:49 [info]   "id" : "592f1a61cb0e4b7d14db96e8",
31-May-2017 14:32:49 [info]   "name" : "Dataset 2 API Test Creation",
31-May-2017 14:32:49 [info]   "description" : "Part 2 of Dataset API Test Suite",
31-May-2017 14:32:49 [info]   "created" : "Wed May 31 14:32:49 CDT 2017",
31-May-2017 14:32:49 [info]   "thumbnail" : "None",
31-May-2017 14:32:49 [info]   "authorId" : "000000000000000000000000",
31-May-2017 14:32:49 [info]   "spaces" : [ ]
31-May-2017 14:32:49 [info] }, {
31-May-2017 14:32:49 [info]   "id" : "592f1a61cb0e4b7d14db96d2",
31-May-2017 14:32:49 [info]   "name" : "Dataset 1 API Test Creation",
31-May-2017 14:32:49 [info]   "description" : "Part 1 of Dataset API Test Suite",
31-May-2017 14:32:49 [info]   "created" : "Wed May 31 14:32:49 CDT 2017",
31-May-2017 14:32:49 [info]   "thumbnail" : "None",
31-May-2017 14:32:49 [info]   "authorId" : "000000000000000000000000",
31-May-2017 14:32:49 [info]   "spaces" : [ ]
31-May-2017 14:32:49 [info] } ]
31-May-2017 14:32:49 2017-05-31 14:32:49,312 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,315 - [DEBUG  ] - application - Adding dataset 592f1a61cb0e4b7d14db96e8 to collection 592f1a61cb0e4b7d14db96c5
31-May-2017 14:32:49 2017-05-31 14:32:49,317 - [DEBUG  ] - application - Adding dataset to collection completed
31-May-2017 14:32:49 [info] - must respond to the attachDataset(coll_id:UUID, ds_id:UUID) function routed by POST /api/collections/:coll_id/datasets/:ds_id for dataset 2
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + contentAsString{"datasetsInCollection":2}
31-May-2017 14:32:49 2017-05-31 14:32:49,323 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,325 - [DEBUG  ] - application - Removing dataset 592f1a61cb0e4b7d14db96e8 from collection 592f1a61cb0e4b7d14db96c5
31-May-2017 14:32:49 2017-05-31 14:32:49,329 - [DEBUG  ] - application - Removing dataset from collection completed
31-May-2017 14:32:49 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNotFound) function routed by DELETE /api/collections/:coll_id/datasets/:ds_id for dataset 2
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + contentAsString{"status":"success"}
31-May-2017 14:32:49 2017-05-31 14:32:49,334 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,335 - [DEBUG  ] - application - Removing dataset 592f1a61cb0e4b7d14db96d2 from collection 592f1a61cb0e4b7d14db96c5
31-May-2017 14:32:49 2017-05-31 14:32:49,337 - [DEBUG  ] - application - Removing dataset from collection completed
31-May-2017 14:32:49 [info] - must respond to the removeDataset(coll_id:UUID, ds_id:UUID, ignoreNoteFound) function routed by POST /api/collections/:coll_id/datasets/:ds_id/:ignoreNotFound for dataset 2
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + contentAsString{"status":"success"}
31-May-2017 14:32:49 2017-05-31 14:32:49,340 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,341 - [DEBUG  ] - application - userdfSPARQLStore not enabled
31-May-2017 14:32:49 2017-05-31 14:32:49,345 - [DEBUG  ] - application - Removing XML metadata belonging to file 592f1a61cb0e4b7d14db96c8 from dataset 592f1a61cb0e4b7d14db96d2.
31-May-2017 14:32:49 2017-05-31 14:32:49,355 - [ERROR  ] - application - File not found: 592f1a61cb0e4b7d14db96c8
31-May-2017 14:32:49 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 1
31-May-2017 14:32:49 [info]   + Status_Get=200
31-May-2017 14:32:49 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "status" : "success"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 2017-05-31 14:32:49,358 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,360 - [DEBUG  ] - application - userdfSPARQLStore not enabled
31-May-2017 14:32:49 2017-05-31 14:32:49,367 - [DEBUG  ] - application - Removing XML metadata belonging to file 592f1a61cb0e4b7d14db96e0 from dataset 592f1a61cb0e4b7d14db96e8.
31-May-2017 14:32:49 2017-05-31 14:32:49,373 - [ERROR  ] - application - File not found: 592f1a61cb0e4b7d14db96e0
31-May-2017 14:32:49 [info] - must respond to the deleteDataset(id:UUID) function routed by DELETE /api/datasets/:id for Dataset 2
31-May-2017 14:32:49 [info]   + Status_Get=200
31-May-2017 14:32:49 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "status" : "success"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 2017-05-31 14:32:49,378 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 [info] - must respond to the listCollections() function routed by GET /api/collections
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + content[{"id":"592f1a61cb0e4b7d14db96c6","collectionname":"Collection 2 Test Suite","description":"Collection 2 Tests Description","created":"Wed May 31 14:32:49 CDT 2017","thumbnail":"None","authorId":"000000000000000000000000"},{"id":"592f1a61cb0e4b7d14db96c5","collectionname":"Collection 1 Test Suite","description":"Collection 1 Tests Description","created":"Wed May 31 14:32:49 CDT 2017","thumbnail":"None","authorId":"000000000000000000000000"}]
31-May-2017 14:32:49 2017-05-31 14:32:49,386 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 [info] - must respond to the listCollections() function routed by GET /api/collections/list
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + content[{"id":"592f1a61cb0e4b7d14db96c6","collectionname":"Collection 2 Test Suite","description":"Collection 2 Tests Description","created":"Wed May 31 14:32:49 CDT 2017","thumbnail":"None","authorId":"000000000000000000000000"},{"id":"592f1a61cb0e4b7d14db96c5","collectionname":"Collection 1 Test Suite","description":"Collection 1 Tests Description","created":"Wed May 31 14:32:49 CDT 2017","thumbnail":"None","authorId":"000000000000000000000000"}]
31-May-2017 14:32:49 2017-05-31 14:32:49,392 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 [info] - must respond to the removeCollection(coll_id:UUID) function routed by POST /api/collections/:coll_id/remove 
31-May-2017 14:32:49 [info]   + Status_Get=200
31-May-2017 14:32:49 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "status" : "success"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 2017-05-31 14:32:49,414 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 [info] - must respond to the removeCollection(coll_id:UUID) function routed by DELETE /api/collections/:id 
31-May-2017 14:32:49 [info]   + Status_Get=200
31-May-2017 14:32:49 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "status" : "success"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 2017-05-31 14:32:49,423 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:49 [info] PreviewsAPIAppSpec:
31-May-2017 14:32:49 [info] The Previews API Spec
31-May-2017 14:32:49 [info] - must provide a FakeApplication
31-May-2017 14:32:49 [info] - must make the FakeApplication available implicitly
31-May-2017 14:32:49 [info] - must start the FakeApplication
31-May-2017 14:32:49 [info] The Previews API Spec
31-May-2017 14:32:49 2017-05-31 14:32:49,567 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,571 - [DEBUG  ] - application - created file 592f1a61cb0e4b7d14db9701
31-May-2017 14:32:49 2017-05-31 14:32:49,571 - [DEBUG  ] - application - Uploading file morrowplots.jpg
31-May-2017 14:32:49 [info] - must respond to the Upload File
31-May-2017 14:32:49 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + contentAsString{"id":"592f1a61cb0e4b7d14db9701"}
31-May-2017 14:32:49 2017-05-31 14:32:49,581 - [DEBUG  ] - application - File1 is File:True
31-May-2017 14:32:49 2017-05-31 14:32:49,581 - [DEBUG  ] - application - Uploading Completed
31-May-2017 14:32:49 2017-05-31 14:32:49,606 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,608 - [DEBUG  ] - application - ########Uploading Preview----morrowplots-preview.jpg
31-May-2017 14:32:49 2017-05-31 14:32:49,722 - [DEBUG  ] - application - ctp: Some(application/octet-stream)
31-May-2017 14:32:49 2017-05-31 14:32:49,728 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,747 - [DEBUG  ] - application - : morrowplots-preview.jpg
31-May-2017 14:32:49 [info] - must respond to the upload() and download() function routed by POST/GET /api/previews
31-May-2017 14:32:49 [info]   + Working Directory: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(application/json)
31-May-2017 14:32:49 [info]   + contentAsString{"id":"592f1a61cb0e4b7d14db970c"}
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "id" : "592f1a61cb0e4b7d14db970c"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 [info]   + id value 592f1a61cb0e4b7d14db970c
31-May-2017 14:32:49 [info]   + Status=200
31-May-2017 14:32:49 [info]   + contentType=Some(image/jpeg)
31-May-2017 14:32:49 2017-05-31 14:32:49,764 - [DEBUG  ] - application - File2 is File:True
31-May-2017 14:32:49 2017-05-31 14:32:49,769 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,770 - [DEBUG  ] - application - {"Image":"fid","extractor_id":"test-extractor"}
31-May-2017 14:32:49 2017-05-31 14:32:49,771 - [DEBUG  ] - application - ListBuffer((Image,"fid"), (extractor_id,"test-extractor"))
31-May-2017 14:32:49 2017-05-31 14:32:49,773 - [DEBUG  ] - application - Updating previews.files 592f1a61cb0e4b7d14db970c with Map(Image -> fid, extractor_id -> test-extractor)
31-May-2017 14:32:49 2017-05-31 14:32:49,779 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,780 - [DEBUG  ] - application - api.Files.attachPreview(): No "extractor_id" specified in request, set it to None.  request.body: {}
31-May-2017 14:32:49 2017-05-31 14:32:49,782 - [DEBUG  ] - application - attachToFile: extractorId is 'Some(Other)'.
31-May-2017 14:32:49 2017-05-31 14:32:49,783 - [DEBUG  ] - application - Updating previews.files 592f1a61cb0e4b7d14db970c with Map()
31-May-2017 14:32:49 2017-05-31 14:32:49,788 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 2017-05-31 14:32:49,795 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:49 [info]   + contentAsString2000
31-May-2017 14:32:49
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31-May-2017 14:32:49 [info] �4����<j�>�~i ���        ��@�NG=qH@e��i~�'��HW1V,rjnp9?*�B���S�O �q�u��O�<wH�� $�9�97H���F;P��=�R�dc�`��Pzқ�7�?�H�����C                 
31-May-2017 14:32:49 [info] 
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31-May-2017 14:32:49 [info]
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31-May-2017 14:32:49 [info] �AU��d��sך�E%fu*��'����'��7������g�����=Fs�eg4�H��,�Ǔ˨l۲�9ݞ�E$���ӣ��������K7���%�N���,�Q����+��̶���F�'pRc]�~l�        ����oq�6Hӯ�ķLl�~خ�<���n���T����Ǯ�2��Y�#�[xZV��xFfi���Gf���':�x�m6�.c��.C0�m�>����n-j4�#�Z��j�f�>i�Tq��FG9'9��}���T��_}�O
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31-May-2017 14:32:49 [info] Cms��kȡ�,*���c�:c+����Xt�_���ڙ�V�d��d5�u;��I�J�֣���Z���Uj�[O ����\�XHN��2��=�wV���������+?i�t&49���������<_~!{���e�� �_\7.]��B�nVb�c�����E� �e���අ�H-�nUCgqt�y��A�`���#�(��h��Uy��y���Gs�Ȓ.IX����J������֛wo�<o�"���$|s�m��$r�{����"�07�e$�~�}��"tMV�~3Ũ2���
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31-May-2017 14:32:49 [���j�N��_�y,_�L� �ꖶ�|M�-Q�b];±@�ȅT`<�G��RT�g���N/�6�V���k�u`�E�����&�����ټQ��Mu8V�� rz�ڑ�^��x�%�o-��0��q�������_{�3O�O��#����f|+�NX�����B5�F�%����F�K�i&X��l�z�I��\|�4x�W��t�-�ͩ遱�y1� ln��+���XIw��o�7`���T~'�Y��n��\�=�A9ϯ��d�V�@�I�&r�����٣Ii���h"r�� �pFX�����J~������I$��U��q�x��Q�u �:.8�0q�1]�x�5E�q������<�Mǰ��weX�<zg9��ƚ�+�1uw���߲�f����fS����Z���+\�2001�����O��^���w_�r�&� [ɔ        �0_���Ɵ�        ����������1K��ɻ�'���<N�\����]��ӎ:~�k`4��ܘ(q�z��+�H�Cp�4���
31-May-2017 14:32:49 [info] �$Fn�hȚ}��c������S{\���/�~$xz/�cY���֣Ҷ�)�ȗz���ˉ�_p:zQEg.��cJ;�[) 1T1��s�0j#[�v�m�a1R��t�<s�:c�z(����ӳ�^{����>G���׭Ok}�ݪ����'���(��K)ǫ����e��r��#�>�[�b��������W,�OC9h��
31-May-2017 14:32:49
31-May-2017 14:32:49 [info] 0
31-May-2017 14:32:49
31-May-2017 14:32:49 [info]
31-May-2017 14:32:49
31-May-2017 14:32:49 [info]
31-May-2017 14:32:49 [info] - must respond to the uploadMetadata(id: UUID) and getMetadata(id: UUID) function routed by POST/GET /api/previews/:id/metadata
31-May-2017 14:32:49 [info]   + File Pathing /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/test/data/previews/data-test-general.json
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "Image" : "fid",
31-May-2017 14:32:49 [info]   "extractor_id" : "test-extractor"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 [info]   + Status_Post=200
31-May-2017 14:32:49 [info]   + contentType_Post=Some(application/json)
31-May-2017 14:32:49 [info] - must respond to the attachPreview(file_id:UUID, preview:UUID) function routed by POST /api/files/:file_id/previews/:p_id 
31-May-2017 14:32:49 [info]   + Status_Post=200
31-May-2017 14:32:49 [info]   + contentType_Post=Some(application/json)
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + {
31-May-2017 14:32:49 [info]   "status" : "success"
31-May-2017 14:32:49 [info] }
31-May-2017 14:32:49 [info] - must respond to the filePreviewsList(id: UUID) function routed by GET /api/files/:file_id/listpreviews
31-May-2017 14:32:49 [info]   + Status_get=200
31-May-2017 14:32:49 [info]   + contentType_get=Some(application/json)
31-May-2017 14:32:49 [info]   + Pretty JSON format
31-May-2017 14:32:49 [info]   + [ {
31-May-2017 14:32:49 [info]   "id" : "592f1a61cb0e4b7d14db970c",
31-May-2017 14:32:49 [info]   "filename" : "morrowplots-preview.jpg",
31-May-2017 14:32:49 [info]   "contentType" : "image/jpeg"
31-May-2017 14:32:49 [info] } ]
31-May-2017 14:32:50 [info] - must respond to the getPreviews(id: UUID) function routed by GET /api/files/:file_id/getPreviews
31-May-2017 14:32:50 [info]   + Status_Get=200
31-May-2017 14:32:50 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:50 [info]   + Pretty JSON format
31-May-2017 14:32:50 [info]   + [ {
31-May-2017 14:32:50 [info]   "file_id" : "592f1a61cb0e4b7d14db9701",
31-May-2017 14:32:50 [info]   "previews" : [ {
31-May-2017 14:32:50 [info]     "pv_route" : "/api/previews/592f1a61cb0e4b7d14db970c",
31-May-2017 14:32:50 [info]     "p_main" : "thumbnail-previewer.js",
31-May-2017 14:32:50 [info]     "pv_id" : "592f1a61cb0e4b7d14db970c",
31-May-2017 14:32:50 [info]     "p_path" : "/assets/javascripts/previewers/thumbnail",
31-May-2017 14:32:50 [info]     "p_id" : "Thumbnail",
31-May-2017 14:32:50 [info]     "pv_length" : "9757",
31-May-2017 14:32:50 [info]     "pv_contenttype" : "image/jpeg"
31-May-2017 14:32:50 [info]   } ]
31-May-2017 14:32:50 [info] } ]
31-May-2017 14:32:50 2017-05-31 14:32:50,252 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:50 [info] - must respond to the list() function routed by GET /api/previews
31-May-2017 14:32:50 [info]   + Status=200
31-May-2017 14:32:50 [info]   + contentType=Some(application/json)
31-May-2017 14:32:50 [info]   + content[{"id":"592f1a61cb0e4b7d14db970c","filename":"morrowplots-preview.jpg","contentType":"image/jpeg"}]
31-May-2017 14:32:50 2017-05-31 14:32:50,260 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:50 [info] - must respond to the removePreview(id:UUID) function routed by DELETE /api/previews/:id for morrowplots preview file
31-May-2017 14:32:50 [info]   + Status_Get=200
31-May-2017 14:32:50 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:50 [info]   + Pretty JSON format
31-May-2017 14:32:50 [info]   + {
31-May-2017 14:32:50 [info]   "status" : "success"
31-May-2017 14:32:50 [info] }
31-May-2017 14:32:50 2017-05-31 14:32:50,269 - [DEBUG  ] - application - Getting value for tos.date
31-May-2017 14:32:50 2017-05-31 14:32:50,271 - [DEBUG  ] - application - Deleting file from indexes morrowplots.jpg
31-May-2017 14:32:50 2017-05-31 14:32:50,272 - [DEBUG  ] - application - Deleting file: morrowplots.jpg
31-May-2017 14:32:50 [info] - must respond to the removeFile(id:UUID) function routed by DELETE /api/files/:id 
31-May-2017 14:32:50 [info]   + Status_Get=200
31-May-2017 14:32:50 [info]   + contentType_Get=Some(application/json)
31-May-2017 14:32:50 [info]   + Pretty JSON format
31-May-2017 14:32:50 [info]   + {
31-May-2017 14:32:50 [info]   "status" : "success"
31-May-2017 14:32:50 [info] }
31-May-2017 14:32:50 [info] ApplicationSpec:
31-May-2017 14:32:50 [info] The Application API Spec
31-May-2017 14:32:50 [info] - must provide a FakeApplication
31-May-2017 14:32:50 [info] - must make the FakeApplication available implicitly
31-May-2017 14:32:50 [info] - must start the FakeApplication
31-May-2017 14:32:50 [info] - must send 404 on a bad request
31-May-2017 14:32:50 2017-05-31 14:32:50,321 - [DEBUG  ] - application - Loading instance counts from appConfig
31-May-2017 14:32:50 2017-05-31 14:32:50,321 - [DEBUG  ] - application - Getting value for countof.datasets
31-May-2017 14:32:50 2017-05-31 14:32:50,323 - [DEBUG  ] - application - Getting value for countof.files
31-May-2017 14:32:50 2017-05-31 14:32:50,325 - [DEBUG  ] - application - Getting value for countof.bytes
31-May-2017 14:32:50 2017-05-31 14:32:50,325 - [DEBUG  ] - application - Getting value for countof.collections
31-May-2017 14:32:50 2017-05-31 14:32:50,326 - [DEBUG  ] - application - Getting value for countof.spaces
31-May-2017 14:32:50 2017-05-31 14:32:50,327 - [DEBUG  ] - application - Getting value for countof.users
31-May-2017 14:32:50 2017-05-31 14:32:50,330 - [DEBUG  ] - application - Getting value for display.name
31-May-2017 14:32:50 2017-05-31 14:32:50,330 - [DEBUG  ] - application - Getting value for welcome.message
31-May-2017 14:32:50 2017-05-31 14:32:50,344 - [DEBUG  ] - application - Getting value for theme
31-May-2017 14:32:50 2017-05-31 14:32:50,607 - [DEBUG  ] - application - Getting value for display.name
31-May-2017 14:32:50 2017-05-31 14:32:50,616 - [DEBUG  ] - application - [securesocial] bootstrap path = securesocial/bootstrap/css/bootstrap.min.css
31-May-2017 14:32:50 2017-05-31 14:32:50,617 - [DEBUG  ] - application - [securesocial] assets controller = controllers.ReverseAssets
31-May-2017 14:32:50 2017-05-31 14:32:50,618 - [DEBUG  ] - application - [securesocial] favicon path = securesocial/images/favicon.png
31-May-2017 14:32:50 2017-05-31 14:32:50,619 - [DEBUG  ] - application - [securesocial] Jquery path = securesocial/javascripts/jquery-1.7.1.min.js
31-May-2017 14:32:50 2017-05-31 14:32:50,620 - [DEBUG  ] - application - [securesocial] custom css path = None
31-May-2017 14:32:50 2017-05-31 14:32:50,623 - [DEBUG  ] - application - Getting value for google.analytics
31-May-2017 14:32:50 [info] - must render the index page
31-May-2017 14:32:50 2017-05-31 14:32:50,630 - [DEBUG  ] - application - Getting value for theme
31-May-2017 14:32:50 2017-05-31 14:32:50,960 - [DEBUG  ] - application - Getting value for display.name
31-May-2017 14:32:50 2017-05-31 14:32:50,961 - [DEBUG  ] - application - Getting value for google.analytics
31-May-2017 14:32:50 [info] - must render index template
31-May-2017 14:32:50 2017-05-31 14:32:50,968 - [INFO   ] - application - [securesocial] unloaded event listener SecureSocialEventListener
31-May-2017 14:32:50 2017-05-31 14:32:50,969 - [INFO   ] - application - [securesocial] unloaded identity provider: userpass
31-May-2017 14:32:50 2017-05-31 14:32:50,982 - [INFO   ] - application - Application shutdown
31-May-2017 14:32:50 2017-05-31 14:32:50,982 - [INFO   ] - application - [securesocial] unloaded password hasher bcrypt
31-May-2017 14:32:50 2017-05-31 14:32:50,988 - [INFO   ] - play - Shutdown application default Akka system.
31-May-2017 14:32:51 2017-05-31 14:32:51,011 - [DEBUG  ] - application - initializing appConfig counts
31-May-2017 14:32:51 [ERROR] [05/31/2017 14:32:51.013] [application-akka.actor.default-dispatcher-3] [ActorSystem(application)] exception while executing timer task
31-May-2017 14:32:51 java.lang.IllegalStateException: this Mongo has been closed
31-May-2017 14:32:51         at com.mongodb.DBTCPConnector._checkClosed(DBTCPConnector.java:95)
31-May-2017 14:32:51         at com.mongodb.DBTCPConnector.innerCall(DBTCPConnector.java:233)
31-May-2017 14:32:51         at com.mongodb.DBTCPConnector.call(DBTCPConnector.java:216)
31-May-2017 14:32:51         at com.mongodb.DBApiLayer$MyCollection.__find(DBApiLayer.java:288)
31-May-2017 14:32:51         at com.mongodb.DB.command(DB.java:262)
31-May-2017 14:32:51         at com.mongodb.DB.command(DB.java:244)
31-May-2017 14:32:51         at com.mongodb.DBCollection.getCount(DBCollection.java:985)
31-May-2017 14:32:51         at com.mongodb.casbah.MongoCollectionBase$class.getCount(MongoCollection.scala:386)
31-May-2017 14:32:51         at com.mongodb.casbah.MongoCollection.getCount(MongoCollection.scala:866)
31-May-2017 14:32:51         at com.mongodb.casbah.MongoCollectionBase$class.count(MongoCollection.scala:627)
31-May-2017 14:32:51         at com.mongodb.casbah.MongoCollection.count(MongoCollection.scala:866)
31-May-2017 14:32:51         at com.novus.salat.dao.SalatDAO.count(SalatDAO.scala:508)
31-May-2017 14:32:51         at com.novus.salat.dao.ModelCompanion$class.count(ModelCompanion.scala:160)
31-May-2017 14:32:51         at services.mongodb.Dataset$.count(MongoDBDatasetService.scala:1483)
31-May-2017 14:32:51         at services.mongodb.MongoDBDatasetService.count(MongoDBDatasetService.scala:57)
31-May-2017 14:32:51         at Global$$anonfun$onStart$3.apply$mcV$sp(Global.scala:88)
31-May-2017 14:32:51         at akka.actor.Scheduler$$anon$11.run(Scheduler.scala:118)
31-May-2017 14:32:51         at akka.actor.LightArrayRevolverScheduler$TaskHolder.run(Scheduler.scala:464)
31-May-2017 14:32:51         at akka.actor.LightArrayRevolverScheduler$$anonfun$close$1.apply(Scheduler.scala:281)
31-May-2017 14:32:51         at akka.actor.LightArrayRevolverScheduler$$anonfun$close$1.apply(Scheduler.scala:280)
31-May-2017 14:32:51         at scala.collection.Iterator$class.foreach(Iterator.scala:727)
31-May-2017 14:32:51         at scala.collection.AbstractIterator.foreach(Iterator.scala:1157)
31-May-2017 14:32:51         at scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
31-May-2017 14:32:51         at scala.collection.AbstractIterable.foreach(Iterable.scala:54)
31-May-2017 14:32:51         at akka.actor.LightArrayRevolverScheduler.close(Scheduler.scala:279)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl.stopScheduler(ActorSystem.scala:630)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$$anonfun$_start$1.apply$mcV$sp(ActorSystem.scala:582)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$$anonfun$_start$1.apply(ActorSystem.scala:582)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$$anonfun$_start$1.apply(ActorSystem.scala:582)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$$anon$3.run(ActorSystem.scala:596)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$TerminationCallbacks$$anonfun$run$1.runNext$1(ActorSystem.scala:750)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$TerminationCallbacks$$anonfun$run$1.apply$mcV$sp(ActorSystem.scala:753)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$TerminationCallbacks$$anonfun$run$1.apply(ActorSystem.scala:746)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$TerminationCallbacks$$anonfun$run$1.apply(ActorSystem.scala:746)
31-May-2017 14:32:51         at akka.util.ReentrantGuard.withGuard(LockUtil.scala:15)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$TerminationCallbacks.run(ActorSystem.scala:746)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$$anonfun$terminationCallbacks$1.apply(ActorSystem.scala:593)
31-May-2017 14:32:51         at akka.actor.ActorSystemImpl$$anonfun$terminationCallbacks$1.apply(ActorSystem.scala:593)
31-May-2017 14:32:51         at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:32)
31-May-2017 14:32:51         at akka.dispatch.BatchingExecutor$Batch$$anonfun$run$1.processBatch$1(BatchingExecutor.scala:67)
31-May-2017 14:32:51         at akka.dispatch.BatchingExecutor$Batch$$anonfun$run$1.apply$mcV$sp(BatchingExecutor.scala:82)
31-May-2017 14:32:51         at akka.dispatch.BatchingExecutor$Batch$$anonfun$run$1.apply(BatchingExecutor.scala:59)
31-May-2017 14:32:51         at akka.dispatch.BatchingExecutor$Batch$$anonfun$run$1.apply(BatchingExecutor.scala:59)
31-May-2017 14:32:51         at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:72)
31-May-2017 14:32:51         at akka.dispatch.BatchingExecutor$Batch.run(BatchingExecutor.scala:58)
31-May-2017 14:32:51         at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:42)
31-May-2017 14:32:51         at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:386)
31-May-2017 14:32:51         at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
31-May-2017 14:32:51         at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
31-May-2017 14:32:51         at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
31-May-2017 14:32:51         at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
31-May-2017 14:32:51
31-May-2017 14:32:51 [info] ScalaTest
31-May-2017 14:32:51 [info] Run completed in 10 seconds, 289 milliseconds.
31-May-2017 14:32:51 [info] Total number of tests run: 83
31-May-2017 14:32:51 [info] Suites: completed 7, aborted 0
31-May-2017 14:32:51 [info] Tests: succeeded 83, failed 0, canceled 0, ignored 0, pending 0
31-May-2017 14:32:51 [info] All tests passed.
31-May-2017 14:32:51 [info] Passed: Total 6, Failed 0, Errors 0, Passed 6
31-May-2017 14:32:51 [success] Total time: 33 s, completed May 31, 2017 2:32:51 PM
31-May-2017 14:32:51 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1...
31-May-2017 14:32:51 Finished task 'test' with result: Success
31-May-2017 14:32:51
Substituting variable: ${bamboo.buildNumber} with 1
31-May-2017 14:32:51 Starting task 'doc' of type 'com.atlassian.bamboo.plugins.sbt:sbt'
31-May-2017 14:32:51
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-659-return-iterator-objecttype-instead - default #1 (CATS-CORE803-JOB1-1)'
... running command line:
/home/bamboo/sbt-0.13.13/bin/sbt doc
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=bugfix/CATS-659-return-iterator-objecttype-instead
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bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster
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bamboo_planRepository_1_branchDisplayName=bugfix/CATS-659-return-iterator-objecttype-instead
bamboo_repository_145064037_revision_number=5ff5643ae9006cfda40c3feb7ff572cb066884f0
bamboo_repository_revision_number=5ff5643ae9006cfda40c3feb7ff572cb066884f0
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE803-JOB1-1
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_15=/bin/sh /home/bamboo/bamboo-agent-home/temp/CATS-CORE803-JOB1-1-ScriptBuildTask-4162615443528165466.sh
JAVA_OPTS=-Dbamboo.buildNumber=1
bamboo_repository_145064037_name=clowder
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bamboo_planRepository_1_name=clowder
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bamboo_capability_system_os=linux
bamboo_shortPlanName=bugfix-CATS-659-return-iterator-objecttype-instead
bamboo_planRepository_name=clowder
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bamboo_shortJobName=default
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE803-JOB1-1
bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_build_commandline_com_atlassian_bamboo_plugins_sbt_sbt_18=/home/bamboo/sbt-0.13.13/bin/sbt compile
bamboo_build_commandline_com_atlassian_bamboo_plugins_sbt_sbt_19=/home/bamboo/sbt-0.13.13/bin/sbt test-only integration.APITestSuite
bamboo_build_commandline_com_atlassian_bamboo_plugins_sbt_sbt_17=/home/bamboo/sbt-0.13.13/bin/sbt clean update
bamboo_agentId=143032321
bamboo_planName=Clowder - CORE - bugfix-CATS-659-return-iterator-objecttype-instead
bamboo_shortPlanKey=CORE803
bamboo_repository_145064037_branch_name=bugfix/CATS-659-return-iterator-objecttype-instead
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_shortJobKey=JOB1
bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node
bamboo_planRepository_revision=5ff5643ae9006cfda40c3feb7ff572cb066884f0
bamboo_buildTimeStamp=2017-05-31T14:28:08.031-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_buildResultKey=CATS-CORE803-JOB1-1
bamboo_repository_git_branch=bugfix/CATS-659-return-iterator-objecttype-instead
bamboo_repository_branch_name=bugfix/CATS-659-return-iterator-objecttype-instead
bamboo_buildPlanName=Clowder - CORE - bugfix-CATS-659-return-iterator-objecttype-instead - default
bamboo_planRepository_1_revision=5ff5643ae9006cfda40c3feb7ff572cb066884f0
bamboo_capability_system_builder_command_python3=/usr/bin/python3
bamboo_repository_name=clowder
JAVA_HOME=/home/bamboo/jdk1.8.0_66
bamboo_buildFailed=false
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_branch=bugfix/CATS-659-return-iterator-objecttype-instead
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
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bamboo_repository_145064037_git_branch=bugfix/CATS-659-return-iterator-objecttype-instead
bamboo_repository_git_username=
bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13
bamboo_planRepository_branchDisplayName=bugfix/CATS-659-return-iterator-objecttype-instead
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=bbserver
bamboo_planRepository_branchName=bugfix/CATS-659-return-iterator-objecttype-instead
bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7
bamboo_capability_system_hostname=buildserver-1
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_repository_145064037_git_username=
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_plan_storageTag=plan-144900295
SBT_HOME=/home/bamboo/sbt-0.13.13
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_planRepository_type=bbserver
bamboo_planRepository_1_username=
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
bamboo_planKey=CATS-CORE803
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/clowder.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/CATS-659-return-iterator-objecttype-instead
PATH=/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
31-May-2017 14:32:53 [info] Loading project definition from /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/project
31-May-2017 14:32:54 [info] Set current project to clowder (in build file:/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/)
31-May-2017 14:32:55 [info] Main Scala API documentation to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/target/scala-2.10/api...
31-May-2017 14:33:06 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/Global.scala:60: postfix operator minutes should be enabled
31-May-2017 14:33:06 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:06 [warn] This can be achieved by adding the import clause 'import scala.language.postfixOps'
31-May-2017 14:33:06 [warn] or by setting the compiler option -language:postfixOps.
31-May-2017 14:33:06 [warn] See the Scala docs for value scala.language.postfixOps for a discussion
31-May-2017 14:33:06 [warn] why the feature should be explicitly enabled.
31-May-2017 14:33:06 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
31-May-2017 14:33:06 [warn]                                                           ^
31-May-2017 14:33:06 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/Global.scala:60: postfix operator minutes should be enabled
31-May-2017 14:33:06 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:06 [warn]       extractorTimer = Akka.system().scheduler.schedule(0 minutes, 5 minutes) {
31-May-2017 14:33:06 [warn]                                                                      ^
31-May-2017 14:33:06 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/Global.scala:66: postfix operator minutes should be enabled
31-May-2017 14:33:06 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:06 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
31-May-2017 14:33:06 [warn]                                                     ^
31-May-2017 14:33:06 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/Global.scala:66: postfix operator minutes should be enabled
31-May-2017 14:33:06 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:06 [warn]       jobTimer = Akka.system().scheduler.schedule(0 minutes, 1 minutes) {
31-May-2017 14:33:06 [warn]                                                                ^
31-May-2017 14:33:06 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/Global.scala:79: postfix operator seconds should be enabled
31-May-2017 14:33:06 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:06 [warn]         Akka.system().scheduler.scheduleOnce(10 seconds) {
31-May-2017 14:33:06 [warn]                                                 ^
31-May-2017 14:33:07 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Admin.scala:179: postfix operator seconds should be enabled
31-May-2017 14:33:07 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:07 [warn]     Akka.system.scheduler.scheduleOnce(1 seconds) {
31-May-2017 14:33:07 [warn]                                          ^
31-May-2017 14:33:07 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Collections.scala:567: a pure expression does nothing in statement position; you may be omitting necessary parentheses
31-May-2017 14:33:07 [warn]           return true
31-May-2017 14:33:07 [warn]                  ^
31-May-2017 14:33:07 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Collections.scala:567: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
31-May-2017 14:33:07 [warn]           return true
31-May-2017 14:33:07 [warn]           ^
31-May-2017 14:33:07 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Collections.scala:569: a pure expression does nothing in statement position; you may be omitting necessary parentheses
31-May-2017 14:33:07 [warn]           return false
31-May-2017 14:33:07 [warn]                  ^
31-May-2017 14:33:07 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Collections.scala:569: enclosing method isCollectionRootOrHasNoParent has result type Unit: return value discarded
31-May-2017 14:33:07 [warn]           return false
31-May-2017 14:33:07 [warn]           ^
31-May-2017 14:33:09 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/CurationObjects.scala:122: postfix operator toList should be enabled
31-May-2017 14:33:09 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:09 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
31-May-2017 14:33:09 [warn]                                                                                                                                ^
31-May-2017 14:33:10 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Extractions.scala:14: imported `Files' is permanently hidden by definition of class Files in package api
31-May-2017 14:33:10 [warn] import play.api.libs.{Files, MimeTypes}
31-May-2017 14:33:10 [warn]                       ^
31-May-2017 14:33:11 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Files.scala:440: @deprecated now takes two arguments; see the scaladoc.
31-May-2017 14:33:11 [warn]   @deprecated
31-May-2017 14:33:11 [warn]    ^
31-May-2017 14:33:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Geostreams.scala:46: postfix operator tupled should be enabled
31-May-2017 14:33:13 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:13 [warn]   ) tupled
31-May-2017 14:33:13 [warn]     ^
31-May-2017 14:33:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Geostreams.scala:54: postfix operator tupled should be enabled
31-May-2017 14:33:13 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:13 [warn]   ) tupled
31-May-2017 14:33:13 [warn]     ^
31-May-2017 14:33:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Geostreams.scala:63: postfix operator tupled should be enabled
31-May-2017 14:33:13 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:13 [warn]   ) tupled
31-May-2017 14:33:13 [warn]     ^
31-May-2017 14:33:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Geostreams.scala:70: postfix operator tupled should be enabled
31-May-2017 14:33:13 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:13 [warn]     ) tupled
31-May-2017 14:33:13 [warn]       ^
31-May-2017 14:33:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Geostreams.scala:78: postfix operator tupled should be enabled
31-May-2017 14:33:13 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:13 [warn]     ) tupled
31-May-2017 14:33:13 [warn]       ^
31-May-2017 14:33:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/api/Geostreams.scala:87: postfix operator tupled should be enabled
31-May-2017 14:33:13 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:13 [warn]     ) tupled
31-May-2017 14:33:13 [warn]       ^
31-May-2017 14:33:13 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBInstitutionService.scala:3: imported `Institution' is permanently hidden by definition of object Institution in package mongodb
31-May-2017 14:33:13 [warn] import models.Institution
31-May-2017 14:33:13 [warn]               ^
31-May-2017 14:33:14 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBProjectService.scala:3: imported `Project' is permanently hidden by definition of object Project in package mongodb
31-May-2017 14:33:14 [warn] import models.Project
31-May-2017 14:33:14 [warn]               ^
31-May-2017 14:33:16 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/controllers/CurationObjects.scala:14: imported `Files' is permanently hidden by definition of class Files in package controllers
31-May-2017 14:33:16 [warn] import play.api.libs.Files
31-May-2017 14:33:16 [warn]                      ^
31-May-2017 14:33:16 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/controllers/CurationObjects.scala:493: postfix operator toList should be enabled
31-May-2017 14:33:16 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:16 [warn]       metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
31-May-2017 14:33:16 [warn]                                                                                                                          ^
31-May-2017 14:33:16 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/controllers/CurationObjects.scala:723: postfix operator toList should be enabled
31-May-2017 14:33:16 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:16 [warn]             metadataJson = metadataJson ++ Map(key -> Json.toJson(metadataList.filter(_.label == key).map{item => item.content}toList))
31-May-2017 14:33:16 [warn]                                                                                                                                ^
31-May-2017 14:33:17 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/controllers/Registration.scala:13: imported `Registration' is permanently hidden by definition of class Registration in package controllers
31-May-2017 14:33:17 [warn] import securesocial.controllers.{ProviderController, Registration, TemplatesPlugin}
31-May-2017 14:33:17 [warn]                                                      ^
31-May-2017 14:33:17 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/controllers/Registration.scala:57: reflective access of structural type member value currentHasher should be enabled
31-May-2017 14:33:17 [warn] by making the implicit value scala.language.reflectiveCalls visible.
31-May-2017 14:33:17 [warn] This can be achieved by adding the import clause 'import scala.language.reflectiveCalls'
31-May-2017 14:33:17 [warn] or by setting the compiler option -language:reflectiveCalls.
31-May-2017 14:33:17 [warn] See the Scala docs for value scala.language.reflectiveCalls for a discussion
31-May-2017 14:33:17 [warn] why the feature should be explicitly enabled.
31-May-2017 14:33:17 [warn]                 passwordInfo = Some(Registry.hashers.currentHasher.hash(info.password))
31-May-2017 14:33:17 [warn]                                                      ^
31-May-2017 14:33:18 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/controllers/Spaces.scala:279: postfix operator toMap should be enabled
31-May-2017 14:33:18 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:18 [warn]         val roleDescription = users.listRoles() map (t => t.name -> t.description) toMap
31-May-2017 14:33:18 [warn]                                                                                    ^
31-May-2017 14:33:18 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/models/Comment.scala:25: implicit conversion method toElasticsearchComment should be enabled
31-May-2017 14:33:18 [warn] by making the implicit value scala.language.implicitConversions visible.
31-May-2017 14:33:18 [warn] This can be achieved by adding the import clause 'import scala.language.implicitConversions'
31-May-2017 14:33:18 [warn] or by setting the compiler option -language:implicitConversions.
31-May-2017 14:33:18 [warn] See the Scala docs for value scala.language.implicitConversions for a discussion
31-May-2017 14:33:18 [warn] why the feature should be explicitly enabled.
31-May-2017 14:33:18 [warn]   implicit def toElasticsearchComment(c: Comment): ElasticsearchComment = {
31-May-2017 14:33:18 [warn]                ^
31-May-2017 14:33:19 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/models/Tag.scala:17: implicit conversion method toElasticsearchTag should be enabled
31-May-2017 14:33:19 [warn] by making the implicit value scala.language.implicitConversions visible.
31-May-2017 14:33:19 [warn]   implicit def toElasticsearchTag(t: Tag): ElasticsearchTag = {
31-May-2017 14:33:19 [warn]                ^
31-May-2017 14:33:19 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/models/UUID.scala:36: implicit conversion method stringToUUID should be enabled
31-May-2017 14:33:19 [warn] by making the implicit value scala.language.implicitConversions visible.
31-May-2017 14:33:19 [warn]   implicit def stringToUUID(s: String) = UUID(s)
31-May-2017 14:33:19 [warn]                ^
31-May-2017 14:33:19 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/models/UUID.scala:37: implicit conversion method uuidToObjectId should be enabled
31-May-2017 14:33:19 [warn] by making the implicit value scala.language.implicitConversions visible.
31-May-2017 14:33:19 [warn]   implicit def uuidToObjectId(uuid: UUID) = new ObjectId(uuid.stringify)
31-May-2017 14:33:19 [warn]                ^
31-May-2017 14:33:19 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/models/UUID.scala:38: implicit conversion method objectIdToUUID should be enabled
31-May-2017 14:33:19 [warn] by making the implicit value scala.language.implicitConversions visible.
31-May-2017 14:33:19 [warn]   implicit def objectIdToUUID(objectId: ObjectId) = UUID(objectId.toString)
31-May-2017 14:33:19 [warn]                ^
31-May-2017 14:33:19 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/models/User.scala:101: implicit conversion method userToMiniUser should be enabled
31-May-2017 14:33:19 [warn] by making the implicit value scala.language.implicitConversions visible.
31-May-2017 14:33:19 [warn]   implicit def userToMiniUser(x: User): MiniUser = x.getMiniUser
31-May-2017 14:33:19 [warn]                ^
31-May-2017 14:33:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/ElasticsearchPlugin.scala:583: a pure expression does nothing in statement position; you may be omitting necessary parentheses
31-May-2017 14:33:20 [warn]     """dynamic_templates": [
31-May-2017 14:33:20 [warn]     ^
31-May-2017 14:33:20 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/PolyglotPlugin.scala:83: postfix operator seconds should be enabled
31-May-2017 14:33:20 [warn] by making the implicit value scala.language.postfixOps visible.
31-May-2017 14:33:20 [warn]           akka.pattern.after(3 seconds, using = Akka.system.scheduler)(checkForFileAndDownload((triesLeft - 1), url, outputStream))
31-May-2017 14:33:20 [warn]                                ^
31-May-2017 14:33:21 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoContext.scala:253: implicit conversion method dbObjectToString should be enabled
31-May-2017 14:33:21 [warn] by making the implicit value scala.language.implicitConversions visible.
31-May-2017 14:33:21 [warn]   implicit def dbObjectToString(dbObject: DBObject): String = {
31-May-2017 14:33:21 [warn]                ^
31-May-2017 14:33:22 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBCommentService.scala:3: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
31-May-2017 14:33:22 [warn] import models.{UUID, Comment}
31-May-2017 14:33:22 [warn]                      ^
31-May-2017 14:33:23 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBTagService.scala:7: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
31-May-2017 14:33:23 [warn] import models.{Tag, UUID}
31-May-2017 14:33:23 [warn]                ^
31-May-2017 14:33:23 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBExtractionRequestsService.scala:20: imported `MongoSalatPlugin' is permanently hidden by definition of class MongoSalatPlugin in package mongodb
31-May-2017 14:33:23 [warn] import services.mongodb.MongoSalatPlugin
31-May-2017 14:33:23 [warn]                         ^
31-May-2017 14:33:23 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBExtractionService.scala:4: imported `Extraction' is permanently hidden by definition of object Extraction in package mongodb
31-May-2017 14:33:23 [warn] import models.{UUID, Extraction}
31-May-2017 14:33:23 [warn]                      ^
31-May-2017 14:33:23 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBExtractionService.scala:13: imported `WebPageResource' is permanently hidden by definition of object WebPageResource in package mongodb
31-May-2017 14:33:23 [warn] import models.WebPageResource
31-May-2017 14:33:23 [warn]               ^
31-May-2017 14:33:24 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBSectionService.scala:5: imported `Tag' is permanently hidden by definition of object Tag in package mongodb
31-May-2017 14:33:24 [warn] import models.{UUID, Tag, Comment, Section, User}
31-May-2017 14:33:24 [warn]                      ^
31-May-2017 14:33:24 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBSectionService.scala:5: imported `Comment' is permanently hidden by definition of object Comment in package mongodb
31-May-2017 14:33:24 [warn] import models.{UUID, Tag, Comment, Section, User}
31-May-2017 14:33:24 [warn]                           ^
31-May-2017 14:33:25 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBSelectionService.scala:11: imported `Dataset' is permanently hidden by definition of object Dataset in package mongodb
31-May-2017 14:33:25 [warn] import models.{UUID, Dataset, Selected}
31-May-2017 14:33:25 [warn]                      ^
31-May-2017 14:33:25 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBSpaceService.scala:19: imported `Collection' is permanently hidden by definition of object Collection in package mongodb
31-May-2017 14:33:25 [warn] import models.Collection
31-May-2017 14:33:25 [warn]               ^
31-May-2017 14:33:25 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/mongodb/MongoDBSpaceService.scala:20: imported `Dataset' is permanently hidden by definition of object Dataset in package mongodb
31-May-2017 14:33:25 [warn] import models.Dataset
31-May-2017 14:33:25 [warn]               ^
31-May-2017 14:33:26 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/util/SearchUtils.scala:115: This catches all Throwables. If this is really intended, use `case _ : Throwable` to clear this warning.
31-May-2017 14:33:27 [warn]             case _ => {
31-May-2017 14:33:27 [warn]                  ^
31-May-2017 14:33:41 model contains 894 documentable templates
31-May-2017 14:33:54 [warn] /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/app/services/irods/IRODSPlugin.scala:9: Tag '@date' is not recognised
31-May-2017 14:33:54 [warn] /**
31-May-2017 14:33:54 [warn] ^
31-May-2017 14:34:04 [warn] 48 warnings found
31-May-2017 14:34:04 [info] Main Scala API documentation successful.
31-May-2017 14:34:04 [success] Total time: 70 s, completed May 31, 2017 2:34:04 PM
31-May-2017 14:34:04 Finished task 'doc' with result: Success
31-May-2017 14:34:04 Starting task 'sphinx' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.command'
31-May-2017 14:34:04
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-659-return-iterator-objecttype-instead - default #1 (CATS-CORE803-JOB1-1)'
... running command line:
/usr/bin/sphinx-build -b html -d _build/doctrees . _build/html
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx
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31-May-2017 14:34:04 Running Sphinx v1.3.6
31-May-2017 14:34:04 making output directory...
31-May-2017 14:34:04 loading pickled environment... not yet created
31-May-2017 14:34:05 building [mo]: targets for 0 po files that are out of date
31-May-2017 14:34:05 building [html]: targets for 12 source files that are out of date
31-May-2017 14:34:05 updating environment: 12 added, 0 changed, 0 removed
31-May-2017 14:34:05 reading sources... [  8%] api
31-May-2017 14:34:05 reading sources... [ 16%] architecture
31-May-2017 14:34:05 reading sources... [ 25%] extractors
31-May-2017 14:34:05 reading sources... [ 33%] index
31-May-2017 14:34:05 reading sources... [ 41%] installation
31-May-2017 14:34:05 reading sources... [ 50%] license
31-May-2017 14:34:05 reading sources... [ 58%] overview
31-May-2017 14:34:05 reading sources... [ 66%] previewers
31-May-2017 14:34:05 reading sources... [ 75%] setup
31-May-2017 14:34:05 reading sources... [ 83%] setup_dev
31-May-2017 14:34:05 reading sources... [ 91%] source
31-May-2017 14:34:05 reading sources... [100%] thankyou
31-May-2017 14:34:05
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/license.rst:10: WARNING: Title underline too short.
31-May-2017 14:34:05
31-May-2017 14:34:05 Contributors
31-May-2017 14:34:05 -------
31-May-2017 14:34:05 looking for now-outdated files... none found
31-May-2017 14:34:05 pickling environment... done
31-May-2017 14:34:05 checking consistency... done
31-May-2017 14:34:05 preparing documents... done
31-May-2017 14:34:05 writing output... [  8%] api
31-May-2017 14:34:05 writing output... [ 16%] architecture
31-May-2017 14:34:05 writing output... [ 25%] extractors
31-May-2017 14:34:05 writing output... [ 33%] index
31-May-2017 14:34:05 writing output... [ 41%] installation
31-May-2017 14:34:05 writing output... [ 50%] license
31-May-2017 14:34:05 writing output... [ 58%] overview
31-May-2017 14:34:05 writing output... [ 66%] previewers
31-May-2017 14:34:05 writing output... [ 75%] setup
31-May-2017 14:34:05 writing output... [ 83%] setup_dev
31-May-2017 14:34:05 writing output... [ 91%] source
31-May-2017 14:34:05 writing output... [100%] thankyou
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 generating indices... genindex
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'source' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/doc/src/sphinx/index.rst:36: WARNING: toctree contains reference to document u'setup' that doesn't have a title: no link will be generated
31-May-2017 14:34:05 writing additional pages... search
31-May-2017 14:34:05 copying images... [ 20%] _static/dataset.png
31-May-2017 14:34:05 copying images... [ 40%] _static/data-model.jpg
31-May-2017 14:34:05 copying images... [ 60%] _static/extraction.jpg
31-May-2017 14:34:05 copying images... [ 80%] _static/architecture.jpg
31-May-2017 14:34:05 copying images... [100%] _static/logo_full.png
31-May-2017 14:34:05
31-May-2017 14:34:05 copying static files... done
31-May-2017 14:34:05 copying extra files... done
31-May-2017 14:34:05 dumping search index in English (code: en) ... done
31-May-2017 14:34:05 dumping object inventory... done
31-May-2017 14:34:05 build succeeded, 31 warnings.
31-May-2017 14:34:05 Finished task 'sphinx' with result: Success
31-May-2017 14:34:05
Substituting variable: ${bamboo.buildNumber} with 1
31-May-2017 14:34:05 Starting task 'dist' of type 'com.atlassian.bamboo.plugins.sbt:sbt'
31-May-2017 14:34:05
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-659-return-iterator-objecttype-instead - default #1 (CATS-CORE803-JOB1-1)'
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/home/bamboo/sbt-0.13.13/bin/sbt dist
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PATH=/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/jdk1.8.0_66/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
31-May-2017 14:34:08 [info] Loading project definition from /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/project
31-May-2017 14:34:09 [info] Set current project to clowder (in build file:/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/)
31-May-2017 14:34:09 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/target/scala-2.10/clowder_2.10-1.x-SNAPSHOT-sources.jar ...
31-May-2017 14:34:10 [info] Done packaging.
31-May-2017 14:34:10 [info] Wrote /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/target/scala-2.10/clowder_2.10-1.x-SNAPSHOT.pom
31-May-2017 14:34:10 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/target/scala-2.10/clowder_2.10-1.x-SNAPSHOT-javadoc.jar ...
31-May-2017 14:34:12 [info] Done packaging.
31-May-2017 14:34:13 [info] Packaging /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/target/scala-2.10/clowder_2.10-1.x-SNAPSHOT.jar ...
31-May-2017 14:34:18 [info] Done packaging.
31-May-2017 14:34:30 [info]
31-May-2017 14:34:31 [info] Your package is ready in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1/target/universal/clowder-1.x-SNAPSHOT.zip
31-May-2017 14:34:31 [info]
31-May-2017 14:34:31 [success] Total time: 22 s, completed May 31, 2017 2:34:31 PM
31-May-2017 14:34:31 Finished task 'dist' with result: Success
31-May-2017 14:34:31 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
31-May-2017 14:34:31
Beginning to execute external process for build 'Clowder - CORE - bugfix-CATS-659-return-iterator-objecttype-instead - default #1 (CATS-CORE803-JOB1-1)'
... running command line:
/bin/sh docker.sh
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-CORE803-JOB1
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bamboo_planRepository_1_branch=bugfix/CATS-659-return-iterator-objecttype-instead
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bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster
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bamboo_planRepository_1_branchDisplayName=bugfix/CATS-659-return-iterator-objecttype-instead
bamboo_repository_145064037_revision_number=5ff5643ae9006cfda40c3feb7ff572cb066884f0
bamboo_repository_revision_number=5ff5643ae9006cfda40c3feb7ff572cb066884f0
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-CORE803-JOB1-1
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bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_command_12=/usr/bin/sphinx-build -b html -d _build/doctrees . _build/html
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bamboo_build_commandline_com_atlassian_bamboo_plugins_sbt_sbt_18=/home/bamboo/sbt-0.13.13/bin/sbt compile
bamboo_build_commandline_com_atlassian_bamboo_plugins_sbt_sbt_19=/home/bamboo/sbt-0.13.13/bin/sbt test-only integration.APITestSuite
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bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
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bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node
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bamboo_capability_system_builder_command_python3=/usr/bin/python3
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bamboo_planRepository_1_type=bbserver
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bamboo_repository_145064037_git_username=
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_plan_storageTag=plan-144900295
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bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
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bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
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bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
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bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=bugfix/CATS-659-return-iterator-objecttype-instead
31-May-2017 14:34:40 Sending build context to Docker daemon 148.8 MB
31-May-2017 14:34:40
31-May-2017 14:34:40 Step 1/10 : FROM java:8-jre
31-May-2017 14:34:41 8-jre: Pulling from library/java
31-May-2017 14:34:41 Digest: sha256:b91008e234402fc87e7889d6af1f36b6ece844c05989236d83d1f658a6f329b0
31-May-2017 14:34:41 Status: Image is up to date for java:8-jre
31-May-2017 14:34:41 ---> e44d62cf8862
31-May-2017 14:34:41 Step 2/10 : MAINTAINER Rob Kooper <kooper@illinois.edu>
31-May-2017 14:34:41 ---> Using cache
31-May-2017 14:34:41 ---> fa742868ceb1
31-May-2017 14:34:41 Step 3/10 : EXPOSE 9000
31-May-2017 14:34:41 ---> Using cache
31-May-2017 14:34:41 ---> 7a26a778760c
31-May-2017 14:34:41 Step 4/10 : ENV CLOWDER_CONTEXT "/" CLOWDER_ADMINS "" MONGO_URI "" SMTP_HOST "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_URI "" RABBITMQ_MGMT_PORT "" ELASTICSEARCH_SERVICE_CLUSTERNAME "clowder" ELASTICSEARCH_SERVICE_SERVER "" ELASTICSEARCH_SERVICE_PORT "" TOOLMANAGER_URI ""
31-May-2017 14:34:41 ---> Using cache
31-May-2017 14:34:41 ---> 001361ddb2c0
31-May-2017 14:34:41 Step 5/10 : RUN useradd -s /bin/bash clowder
31-May-2017 14:34:41 ---> Using cache
31-May-2017 14:34:41 ---> 7512e6727fe4
31-May-2017 14:34:41 Step 6/10 : COPY files entrypoint.sh /home/clowder/
31-May-2017 14:34:45 ---> 52ff9f2d4c4a
31-May-2017 14:34:45 Removing intermediate container 61cb3cf0c6d5
31-May-2017 14:34:45 Step 7/10 : RUN mkdir -p /home/clowder/clowder/custom /home/clowder/clowder/logs     && chown clowder /home/clowder/clowder /home/clowder/clowder/custom /home/clowder/clowder/logs
31-May-2017 14:34:45 ---> Running in 776e96859c3f
31-May-2017 14:34:47 ---> 4fa1e6f2b4f4
31-May-2017 14:34:47 Removing intermediate container 776e96859c3f
31-May-2017 14:34:47 Step 8/10 : ENTRYPOINT /home/clowder/entrypoint.sh
31-May-2017 14:34:47 ---> Running in c64a905c93e1
31-May-2017 14:34:47 ---> ba3f48c6a00b
31-May-2017 14:34:47 Removing intermediate container c64a905c93e1
31-May-2017 14:34:47 Step 9/10 : CMD server
31-May-2017 14:34:47 ---> Running in 5054d83534a2
31-May-2017 14:34:47 ---> 0ef1744eb1fb
31-May-2017 14:34:47 Removing intermediate container 5054d83534a2
31-May-2017 14:34:47 Step 10/10 : USER clowder
31-May-2017 14:34:47 ---> Running in 324dc26d6411
31-May-2017 14:34:47 ---> 10df5c8e825d
31-May-2017 14:34:47 Removing intermediate container 324dc26d6411
31-May-2017 14:34:47 Successfully built 10df5c8e825d
31-May-2017 14:34:47 Sending build context to Docker daemon 22.02 kB
31-May-2017 14:34:47
31-May-2017 14:34:48 Step 1/5 : FROM ubuntu
31-May-2017 14:34:48 latest: Pulling from library/ubuntu
31-May-2017 14:34:48 Digest: sha256:382452f82a8bbd34443b2c727650af46aced0f94a44463c62a9848133ecb1aa8
31-May-2017 14:34:48 Status: Image is up to date for ubuntu:latest
31-May-2017 14:34:48 ---> ebcd9d4fca80
31-May-2017 14:34:48 Step 2/5 : RUN apt-get -y update     && apt-get -y install curl unzip docker.io python python-dev python-pip     && pip install flask-restful     && pip install arrow     && apt-get clean all     && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*     ;
31-May-2017 14:34:48 ---> Using cache
31-May-2017 14:34:48 ---> 374a8dc2f3ed
31-May-2017 14:34:48 Step 3/5 : COPY FILES.toolserver /
31-May-2017 14:34:48 ---> Using cache
31-May-2017 14:34:48 ---> 0c71a86eb601
31-May-2017 14:34:48 Step 4/5 : ENV TOOLSERVER_PORT 8082
31-May-2017 14:34:48 ---> Using cache
31-May-2017 14:34:48 ---> c7f10c9cc171
31-May-2017 14:34:48 Step 5/5 : CMD /usr/local/bin/usage
31-May-2017 14:34:48 ---> Using cache
31-May-2017 14:34:48 ---> dbb346aa4215
31-May-2017 14:34:48 Successfully built dbb346aa4215
31-May-2017 14:34:48 Sending build context to Docker daemon 9.728 kB
31-May-2017 14:34:48
31-May-2017 14:34:48 Step 1/6 : FROM ubuntu:16.04
31-May-2017 14:34:49 16.04: Pulling from library/ubuntu
31-May-2017 14:34:49 Digest: sha256:382452f82a8bbd34443b2c727650af46aced0f94a44463c62a9848133ecb1aa8
31-May-2017 14:34:49 Status: Image is up to date for ubuntu:16.04
31-May-2017 14:34:49 ---> ebcd9d4fca80
31-May-2017 14:34:49 Step 2/6 : MAINTAINER Bing Zhang <bing@illinois.edu>
31-May-2017 14:34:49 ---> Using cache
31-May-2017 14:34:49 ---> 5d5f6c6a89f8
31-May-2017 14:34:49 Step 3/6 : ENV EMAIL_ADDRESS "" FIRST_NAME "" LAST_NAME "" PASSWORD "" MONGO_URI ""
31-May-2017 14:34:49 ---> Using cache
31-May-2017 14:34:49 ---> b59cbb19e9b0
31-May-2017 14:34:49 Step 4/6 : RUN mkdir -p /data/db &&     apt-get update &&     apt-get install -y lsb-release &&     apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv EA312927 &&     echo "deb http://repo.mongodb.org/apt/ubuntu "$(lsb_release -sc)"/mongodb-org/3.2 multiverse" | tee /etc/apt/sources.list.d/mongodb-org-3.2.list &&     apt-get update && apt-get install -y     mongodb-org     net-tools iproute     python3 python3-pip &&     pip3 install passlib bcrypt
31-May-2017 14:34:49 ---> Using cache
31-May-2017 14:34:49 ---> 4b49c3aeb69a
31-May-2017 14:34:49 Step 5/6 : COPY FILES.mongo-init /
31-May-2017 14:34:49 ---> Using cache
31-May-2017 14:34:49 ---> 85109fc32a76
31-May-2017 14:34:49 Step 6/6 : ENTRYPOINT /usr/local/bin/entrypoint.sh
31-May-2017 14:34:49 ---> Using cache
31-May-2017 14:34:49 ---> da683dbccba1
31-May-2017 14:34:49 Successfully built da683dbccba1
31-May-2017 14:34:49 Tagged clowder toolserver with local
31-May-2017 14:34:49 Tagged clowder mongo-init with local
31-May-2017 14:34:49 Untagged: toolserver-31793:latest
31-May-2017 14:34:49 Untagged: clowder-31793:latest
31-May-2017 14:34:49 Untagged: mongo-init-31793:latest
31-May-2017 14:34:49 Finished task 'docker build' with result: Success
31-May-2017 14:34:49 Running post build plugin 'Docker Container Cleanup'
31-May-2017 14:34:49 Running post build plugin 'NCover Results Collector'
31-May-2017 14:34:49 Running post build plugin 'Clover Results Collector'
31-May-2017 14:34:49 Running post build plugin 'npm Cache Cleanup'
31-May-2017 14:34:49 Running post build plugin 'Artifact Copier'
31-May-2017 14:34:49 Publishing an artifact: dist
31-May-2017 14:34:56 Finished publishing of artifact Shared artifact: [dist], pattern: [clowder-*.zip] anchored at: [target/universal] in 7.706 s
31-May-2017 14:34:56 Publishing an artifact: scaladoc
31-May-2017 14:34:58 Finished publishing of artifact Shared artifact: [scaladoc], pattern: [**/*] anchored at: [target/scala-2.10/api] in 1.435 s
31-May-2017 14:34:58 Publishing an artifact: manual
31-May-2017 14:34:58 Finished publishing of artifact Shared artifact: [manual], pattern: [**/*] anchored at: [doc/src/sphinx/_build/html] in 402.7 ms
31-May-2017 14:34:58 Finalising the build...
31-May-2017 14:34:58 Stopping timer.
31-May-2017 14:34:58 Build CATS-CORE803-JOB1-1 completed.
31-May-2017 14:34:58 Running on server: post build plugin 'NCover Results Collector'
31-May-2017 14:34:58 Running on server: post build plugin 'Build Hanging Detection Configuration'
31-May-2017 14:34:58 Running on server: post build plugin 'Clover Delta Calculator'
31-May-2017 14:34:58 Running on server: post build plugin 'Maven Dependencies Postprocessor'
31-May-2017 14:34:58 All post build plugins have finished
31-May-2017 14:34:58 Generating build results summary...
31-May-2017 14:34:58 Saving build results to disk...
31-May-2017 14:34:58 Logging substituted variables...
31-May-2017 14:34:58 Indexing build results...
31-May-2017 14:34:58 Finished building CATS-CORE803-JOB1-1.