Build: #1 failed
Job: Default Job failed
Build log
The build generated 140 lines of output. Download or view full build log.
| 29-Jan-2020 15:08:31 | Build Clowder - extractors-core - cert-pyclowder-install - Default Job #1 (CATS-EXCORE13-JOB1-1) started building on agent buildserver-3.os.ncsa.edu |
| 29-Jan-2020 15:08:31 | Remote agent on host buildserver-3.os.ncsa.edu |
| 29-Jan-2020 15:08:31 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1 |
| 29-Jan-2020 15:08:31 | Executing build Clowder - extractors-core - cert-pyclowder-install - Default Job #1 (CATS-EXCORE13-JOB1-1) |
| 29-Jan-2020 15:08:31 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 29-Jan-2020 15:08:31 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1 |
| 29-Jan-2020 15:08:31 | Updating source code to revision: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:31 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1/.git'. |
| 29-Jan-2020 15:08:31 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1/.git/ |
| 29-Jan-2020 15:08:31 | Fetching 'refs/heads/cert-pyclowder-install' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-core.git'. Will try to do a shallow fetch. |
| 29-Jan-2020 15:08:31 | Warning: Permanently added '[127.0.0.1]:38885' (RSA) to the list of known hosts. |
| 29-Jan-2020 15:08:32 | From ssh://127.0.0.1:38885/cats/extractors-core |
| 29-Jan-2020 15:08:32 | * [new branch] cert-pyclowder-install -> cert-pyclowder-install |
| 29-Jan-2020 15:08:32 | Checking out revision 7e6a415e09e2919ede79c05c285de803340648eb. |
| 29-Jan-2020 15:08:32 | fatal: reference is not a tree: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:32 | Checkout to revision 7e6a415e09e2919ede79c05c285de803340648eb has failed. |
| 29-Jan-2020 15:08:32 | Warning: failed to checkout source code to directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1', trying to recover... |
| 29-Jan-2020 15:08:32 | Cleaned source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1'... |
| 29-Jan-2020 15:08:32 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1/.git'. |
| 29-Jan-2020 15:08:32 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1/.git/ |
| 29-Jan-2020 15:08:32 | Fetching 'refs/heads/cert-pyclowder-install' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-core.git'. |
| 29-Jan-2020 15:08:32 | Warning: Permanently added '[127.0.0.1]:38885' (RSA) to the list of known hosts. |
| 29-Jan-2020 15:08:32 | From ssh://127.0.0.1:38885/cats/extractors-core |
| 29-Jan-2020 15:08:32 | * [new branch] cert-pyclowder-install -> cert-pyclowder-install |
| 29-Jan-2020 15:08:32 | * [new tag] SEAD_2.0 -> SEAD_2.0 |
| 29-Jan-2020 15:08:32 | * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 |
| 29-Jan-2020 15:08:32 | * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 |
| 29-Jan-2020 15:08:32 | * [new tag] v0.9.4 -> v0.9.4 |
| 29-Jan-2020 15:08:32 | * [new tag] v1.0.0 -> v1.0.0 |
| 29-Jan-2020 15:08:32 | * [new tag] v2.0.0 -> v2.0.0 |
| 29-Jan-2020 15:08:32 | Fetching to source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1' completed, proceeding with checkout... |
| 29-Jan-2020 15:08:32 | Checking out revision 7e6a415e09e2919ede79c05c285de803340648eb. |
| 29-Jan-2020 15:08:32 | fatal: reference is not a tree: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:32 | Checkout to revision 7e6a415e09e2919ede79c05c285de803340648eb has failed. |
| 29-Jan-2020 15:08:32 | Updating source code to revision: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:32 | Fetching 'refs/heads/cert-pyclowder-install' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-core.git'. Will try to do a shallow fetch. |
| 29-Jan-2020 15:08:32 | Warning: Permanently added '[127.0.0.1]:38885' (RSA) to the list of known hosts. |
| 29-Jan-2020 15:08:32 | Checking out revision 7e6a415e09e2919ede79c05c285de803340648eb. |
| 29-Jan-2020 15:08:32 | fatal: reference is not a tree: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:32 | Checkout to revision 7e6a415e09e2919ede79c05c285de803340648eb has failed. |
| 29-Jan-2020 15:08:32 | Warning: failed to checkout source code to directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1', trying to recover... |
| 29-Jan-2020 15:08:32 | Cleaned source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1'... |
| 29-Jan-2020 15:08:32 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1/.git'. |
| 29-Jan-2020 15:08:32 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1/.git/ |
| 29-Jan-2020 15:08:32 | Fetching 'refs/heads/cert-pyclowder-install' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-core.git'. |
| 29-Jan-2020 15:08:32 | Warning: Permanently added '[127.0.0.1]:38885' (RSA) to the list of known hosts. |
| 29-Jan-2020 15:08:33 | From ssh://127.0.0.1:38885/cats/extractors-core |
| 29-Jan-2020 15:08:33 | * [new branch] cert-pyclowder-install -> cert-pyclowder-install |
| 29-Jan-2020 15:08:33 | * [new tag] SEAD_2.0 -> SEAD_2.0 |
| 29-Jan-2020 15:08:33 | * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 |
| 29-Jan-2020 15:08:33 | * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 |
| 29-Jan-2020 15:08:33 | * [new tag] v0.9.4 -> v0.9.4 |
| 29-Jan-2020 15:08:33 | * [new tag] v1.0.0 -> v1.0.0 |
| 29-Jan-2020 15:08:33 | * [new tag] v2.0.0 -> v2.0.0 |
| 29-Jan-2020 15:08:33 | Fetching to source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1' completed, proceeding with checkout... |
| 29-Jan-2020 15:08:33 | Checking out revision 7e6a415e09e2919ede79c05c285de803340648eb. |
| 29-Jan-2020 15:08:33 | fatal: reference is not a tree: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:33 | Checkout to revision 7e6a415e09e2919ede79c05c285de803340648eb has failed. |
| 29-Jan-2020 15:08:34 | Updating source code to revision: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:34 | Fetching 'refs/heads/cert-pyclowder-install' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-core.git'. Will try to do a shallow fetch. |
| 29-Jan-2020 15:08:34 | Warning: Permanently added '[127.0.0.1]:38885' (RSA) to the list of known hosts. |
| 29-Jan-2020 15:08:34 | Checking out revision 7e6a415e09e2919ede79c05c285de803340648eb. |
| 29-Jan-2020 15:08:34 | fatal: reference is not a tree: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:34 | Checkout to revision 7e6a415e09e2919ede79c05c285de803340648eb has failed. |
| 29-Jan-2020 15:08:34 | Warning: failed to checkout source code to directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1', trying to recover... |
| 29-Jan-2020 15:08:34 | Cleaned source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1'... |
| 29-Jan-2020 15:08:34 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1/.git'. |
| 29-Jan-2020 15:08:34 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1/.git/ |
| 29-Jan-2020 15:08:34 | Fetching 'refs/heads/cert-pyclowder-install' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-core.git'. |
| 29-Jan-2020 15:08:34 | Warning: Permanently added '[127.0.0.1]:38885' (RSA) to the list of known hosts. |
| 29-Jan-2020 15:08:34 | From ssh://127.0.0.1:38885/cats/extractors-core |
| 29-Jan-2020 15:08:34 | * [new branch] cert-pyclowder-install -> cert-pyclowder-install |
| 29-Jan-2020 15:08:34 | * [new tag] SEAD_2.0 -> SEAD_2.0 |
| 29-Jan-2020 15:08:34 | * [new tag] browndog_v0.2.0 -> browndog_v0.2.0 |
| 29-Jan-2020 15:08:34 | * [new tag] browndog_v0.3.0 -> browndog_v0.3.0 |
| 29-Jan-2020 15:08:34 | * [new tag] v0.9.4 -> v0.9.4 |
| 29-Jan-2020 15:08:34 | * [new tag] v1.0.0 -> v1.0.0 |
| 29-Jan-2020 15:08:34 | * [new tag] v2.0.0 -> v2.0.0 |
| 29-Jan-2020 15:08:34 | Fetching to source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1' completed, proceeding with checkout... |
| 29-Jan-2020 15:08:34 | Checking out revision 7e6a415e09e2919ede79c05c285de803340648eb. |
| 29-Jan-2020 15:08:34 | fatal: reference is not a tree: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:34 | Checkout to revision 7e6a415e09e2919ede79c05c285de803340648eb has failed. |
| 29-Jan-2020 15:08:34 | Error occurred while running Task 'Checkout Default Repository(1)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout. |
| 29-Jan-2020 15:08:34 | java.lang.RuntimeException: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:141) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.executor.RetryingTaskExecutor.runTask(RetryingTaskExecutor.java:99) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:207) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:188) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.execute(VcsCheckoutTask.java:123) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.task.TaskExecutorImpl.lambda$executeTasks$3(TaskExecutorImpl.java:319) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.task.TaskExecutorImpl.executeTaskWithPrePostActions(TaskExecutorImpl.java:252) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.task.TaskExecutorImpl.executeTasks(TaskExecutorImpl.java:319) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.task.TaskExecutorImpl.executePreparationTasks(TaskExecutorImpl.java:91) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.build.pipeline.tasks.PrepareBuildTask.call(PrepareBuildTask.java:81) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.executeBuildPhase(DefaultBuildAgent.java:204) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:176) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.lambda$waitAndPerformBuild$0(BuildAgentControllerImpl.java:131) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:185) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:125) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent$1.run(DefaultBuildAgent.java:127) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.utils.BambooRunnables$1.run(BambooRunnables.java:48) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.security.ImpersonationHelper$1.run(ImpersonationHelper.java:41) |
| 29-Jan-2020 15:08:34 | at java.lang.Thread.run(Thread.java:745) |
| 29-Jan-2020 15:08:34 | Caused by: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.retrieveSourceCode(BitbucketServerWorkingCopyManager.java:100) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.fillWorkingDirFromVcs(VcsCheckoutTask.java:206) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.access$000(VcsCheckoutTask.java:54) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask$1.call(VcsCheckoutTask.java:126) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask$1.call(VcsCheckoutTask.java:123) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:112) |
| 29-Jan-2020 15:08:34 | ... 20 more |
| 29-Jan-2020 15:08:34 | Caused by: com.atlassian.bamboo.repository.RepositoryException: Checkout to revision 7e6a415e09e2919ede79c05c285de803340648eb has failed.command [/usr/bin/git checkout -f 7e6a415e09e2919ede79c05c285de803340648eb] failed with code 128. Working directory was [/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1]., stderr: |
| 29-Jan-2020 15:08:34 | fatal: reference is not a tree: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.checkout(NativeGitOperationHelper.java:493) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.checkout(GitWorkingCopyManager.java:285) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.git.v2.GitWorkingCopyManager.retrieveSourceCode(GitWorkingCopyManager.java:102) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerWorkingCopyManager.retrieveSourceCode(BitbucketServerWorkingCopyManager.java:90) |
| 29-Jan-2020 15:08:34 | ... 25 more |
| 29-Jan-2020 15:08:34 | Caused by: com.atlassian.bamboo.plugins.git.GitCommandException: command [/usr/bin/git checkout -f 7e6a415e09e2919ede79c05c285de803340648eb] failed with code 128. Working directory was [/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXCORE13-JOB1]., stderr: |
| 29-Jan-2020 15:08:34 | fatal: reference is not a tree: 7e6a415e09e2919ede79c05c285de803340648eb |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:728) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:657) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:648) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCheckoutCommandForBranchOrRevision(GitCommandProcessor.java:389) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCheckoutCommand(GitCommandProcessor.java:375) |
| 29-Jan-2020 15:08:34 | at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.checkout(NativeGitOperationHelper.java:472) |
| 29-Jan-2020 15:08:34 | ... 28 more |
| 29-Jan-2020 15:08:34 | Failed to prepare the build 'Clowder - extractors-core - cert-pyclowder-install - Default Job #1 (CATS-EXCORE13-JOB1-1)' |
| 29-Jan-2020 15:08:34 | Running on server: post build plugin 'NCover Results Collector' |
| 29-Jan-2020 15:08:34 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 29-Jan-2020 15:08:34 | Running on server: post build plugin 'Clover Delta Calculator' |
| 29-Jan-2020 15:08:34 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 29-Jan-2020 15:08:34 | All post build plugins have finished |
| 29-Jan-2020 15:08:34 | Generating build results summary... |
| 29-Jan-2020 15:08:34 | Saving build results to disk... |
| 29-Jan-2020 15:08:34 | Logging substituted variables... |
| 29-Jan-2020 15:08:34 | Indexing build results... |
| 29-Jan-2020 15:08:34 | Finished building CATS-EXCORE13-JOB1-1. |