Build: #35 failed

Job: Default Job failed

Stages & jobs

  1. Default Stage

Build log

The build generated 512 lines of output. Download or view full build log.

18-Apr-2018 21:42:59 Build Clowder - extractors-dbpedia - Default Job #35 (CATS-EXDBP-JOB1-35) started building on agent buildserver-1.os.ncsa.edu
18-Apr-2018 21:42:59 Remote agent on host buildserver-1.os.ncsa.edu
18-Apr-2018 21:42:59 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1
18-Apr-2018 21:42:59 Executing build Clowder - extractors-dbpedia - Default Job #35 (CATS-EXDBP-JOB1-35)
18-Apr-2018 21:42:59 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
18-Apr-2018 21:42:59 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1
18-Apr-2018 21:42:59 Updating source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41
18-Apr-2018 21:42:59 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git'.
18-Apr-2018 21:42:59 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1/.git/
18-Apr-2018 21:42:59 Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-dbpedia.git'. Will try to do a shallow fetch.
18-Apr-2018 21:42:59 Warning: Permanently added '[127.0.0.1]:34990' (RSA) to the list of known hosts.
18-Apr-2018 21:42:59 From ssh://127.0.0.1:34990/cats/extractors-dbpedia
18-Apr-2018 21:42:59 * [new branch]      master     -> master
18-Apr-2018 21:42:59 * [new tag]         browndog_v0.2.0 -> browndog_v0.2.0
18-Apr-2018 21:42:59 * [new tag]         browndog_v0.3.0 -> browndog_v0.3.0
18-Apr-2018 21:42:59 Checking out revision 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41.
18-Apr-2018 21:42:59 Already on 'master'
18-Apr-2018 21:42:59 Updated source code to revision: 41c21decd56c8a967bf1fdb5d4d284f6b3b0de41
18-Apr-2018 21:42:59 Finished task 'Checkout Default Repository' with result: Success
18-Apr-2018 21:42:59 Running pre-build action: VCS Version Collector
18-Apr-2018 21:42:59 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
18-Apr-2018 21:42:59
Beginning to execute external process for build 'Clowder - extractors-dbpedia - Default Job #35 (CATS-EXDBP-JOB1-35)'
... running command line:
/bin/sh docker.sh
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXDBP-JOB1
... using extra environment variables:
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18-Apr-2018 21:42:59 Sending build context to Docker daemon  163.3kB
18-Apr-2018 21:42:59
18-Apr-2018 21:42:59 Step 1/13 : FROM clowder/pyclowder:2
18-Apr-2018 21:42:59 2: Pulling from clowder/pyclowder
18-Apr-2018 21:42:59 Digest: sha256:04bd8ce135d29cf9a51abb0d24aa5ed7dfa90f9315666eb49ec032868079f7ee
18-Apr-2018 21:42:59 Status: Image is up to date for clowder/pyclowder:2
18-Apr-2018 21:42:59 ---> d254e5c391bf
18-Apr-2018 21:42:59 Step 2/13 : MAINTAINER Luigi Marigni <lmarini@illinois.edu>
18-Apr-2018 21:43:00 ---> Running in 3efaf8122654
18-Apr-2018 21:43:00 Removing intermediate container 3efaf8122654
18-Apr-2018 21:43:00 ---> eb6bd15b7bcd
18-Apr-2018 21:43:00 Step 3/13 : COPY requirements.txt /home/clowder/
18-Apr-2018 21:43:01 ---> d58a1d8408b3
18-Apr-2018 21:43:01 Step 4/13 : USER root
18-Apr-2018 21:43:01 ---> Running in a31c4b5a0ca3
18-Apr-2018 21:43:02 Removing intermediate container a31c4b5a0ca3
18-Apr-2018 21:43:02 ---> 013b50084ec7
18-Apr-2018 21:43:02 Step 5/13 : RUN apt-get update && apt-get -y install python-dev python-numpy gcc         && pip install -r /home/clowder/requirements.txt
18-Apr-2018 21:43:02 ---> Running in ff6482be06cf
18-Apr-2018 21:43:02 Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [102 kB]
18-Apr-2018 21:43:02 Get:2 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB]
18-Apr-2018 21:43:03 Get:3 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [79.0 kB]
18-Apr-2018 21:43:03 Get:4 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [602 kB]
18-Apr-2018 21:43:03 Get:5 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB]
18-Apr-2018 21:43:03 Get:6 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [431 kB]
18-Apr-2018 21:43:03 Get:7 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3489 B]
18-Apr-2018 21:43:03 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [102 kB]
18-Apr-2018 21:43:03 Get:9 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [102 kB]
18-Apr-2018 21:43:03 Get:10 http://archive.ubuntu.com/ubuntu xenial/universe Sources [9802 kB]
18-Apr-2018 21:43:04 Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB]
18-Apr-2018 21:43:04 Get:12 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB]
18-Apr-2018 21:43:04 Get:13 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB]
18-Apr-2018 21:43:04 Get:14 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB]
18-Apr-2018 21:43:04 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [253 kB]
18-Apr-2018 21:43:04 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [979 kB]
18-Apr-2018 21:43:04 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB]
18-Apr-2018 21:43:04 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [800 kB]
18-Apr-2018 21:43:04 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.5 kB]
18-Apr-2018 21:43:04 Get:20 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [5153 B]
18-Apr-2018 21:43:04 Get:21 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [7734 B]
18-Apr-2018 21:43:06 Fetched 25.1 MB in 3s (7531 kB/s)
18-Apr-2018 21:43:06 Reading package lists...
18-Apr-2018 21:43:07 Reading package lists...
18-Apr-2018 21:43:07 Building dependency tree...
18-Apr-2018 21:43:07 Reading state information...
18-Apr-2018 21:43:08 The following additional packages will be installed:
18-Apr-2018 21:43:08   binutils cpp cpp-5 gcc-5 libasan2 libatomic1 libblas-common libblas3
18-Apr-2018 21:43:08   libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev
18-Apr-2018 21:43:08   libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3
18-Apr-2018 21:43:08   libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0
18-Apr-2018 21:43:08   libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python2.7-dev
18-Apr-2018 21:43:08 Suggested packages:
18-Apr-2018 21:43:08   binutils-doc cpp-doc gcc-5-locales gcc-multilib make autoconf automake
18-Apr-2018 21:43:08   libtool flex bison gdb gcc-doc gcc-5-multilib gcc-5-doc libgcc1-dbg
18-Apr-2018 21:43:08   libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg
18-Apr-2018 21:43:08   libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg
18-Apr-2018 21:43:08   glibc-doc man-browser gfortran python-nose python-numpy-dbg python-numpy-doc
18-Apr-2018 21:43:08 The following NEW packages will be installed:
18-Apr-2018 21:43:08   binutils cpp cpp-5 gcc gcc-5 libasan2 libatomic1 libblas-common libblas3
18-Apr-2018 21:43:08   libc-dev-bin libc6-dev libcc1-0 libcilkrts5 libexpat1-dev libgcc-5-dev
18-Apr-2018 21:43:08   libgfortran3 libgmp10 libgomp1 libisl15 libitm1 liblapack3 liblsan0 libmpc3
18-Apr-2018 21:43:08   libmpfr4 libmpx0 libpython-dev libpython2.7 libpython2.7-dev libquadmath0
18-Apr-2018 21:43:08   libtsan0 libubsan0 linux-libc-dev manpages manpages-dev python-dev
18-Apr-2018 21:43:08   python-numpy python2.7-dev
18-Apr-2018 21:43:08 0 upgraded, 37 newly installed, 0 to remove and 5 not upgraded.
18-Apr-2018 21:43:08 Need to get 62.5 MB of archives.
18-Apr-2018 21:43:08 After this operation, 166 MB of additional disk space will be used.
18-Apr-2018 21:43:08 Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB]
18-Apr-2018 21:43:08 Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB]
18-Apr-2018 21:43:08 Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB]
18-Apr-2018 21:43:08 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages all 4.04-2 [1087 kB]
18-Apr-2018 21:43:09 Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.6 [2311 kB]
18-Apr-2018 21:43:09 Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB]
18-Apr-2018 21:43:09 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.9 [7685 kB]
18-Apr-2018 21:43:09 Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB]
18-Apr-2018 21:43:09 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.9 [38.8 kB]
18-Apr-2018 21:43:09 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.9 [55.0 kB]
18-Apr-2018 21:43:09 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.9 [27.4 kB]
18-Apr-2018 21:43:09 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.9 [8882 B]
18-Apr-2018 21:43:09 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.9 [264 kB]
18-Apr-2018 21:43:09 Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.9 [105 kB]
18-Apr-2018 21:43:09 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.9 [244 kB]
18-Apr-2018 21:43:09 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.9 [95.2 kB]
18-Apr-2018 21:43:09 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.9 [40.1 kB]
18-Apr-2018 21:43:09 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.9 [9774 B]
18-Apr-2018 21:43:09 Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.9 [131 kB]
18-Apr-2018 21:43:09 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.9 [2242 kB]
18-Apr-2018 21:43:09 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.9 [8650 kB]
18-Apr-2018 21:43:10 Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B]
18-Apr-2018 21:43:10 Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B]
18-Apr-2018 21:43:10 Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB]
18-Apr-2018 21:43:10 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu10 [68.7 kB]
18-Apr-2018 21:43:10 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-119.143 [845 kB]
18-Apr-2018 21:43:10 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu10 [2079 kB]
18-Apr-2018 21:43:10 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1-dev amd64 2.1.0-7ubuntu0.16.04.3 [115 kB]
18-Apr-2018 21:43:10 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.9 [260 kB]
18-Apr-2018 21:43:10 Get:30 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB]
18-Apr-2018 21:43:10 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7 amd64 2.7.12-1ubuntu0~16.04.3 [1070 kB]
18-Apr-2018 21:43:10 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-dev amd64 2.7.12-1ubuntu0~16.04.3 [27.8 MB]
18-Apr-2018 21:43:11 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-dev amd64 2.7.12-1~16.04 [7840 B]
18-Apr-2018 21:43:11 Get:34 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages-dev all 4.04-2 [2048 kB]
18-Apr-2018 21:43:11 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-dev amd64 2.7.12-1ubuntu0~16.04.3 [276 kB]
18-Apr-2018 21:43:11 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-dev amd64 2.7.12-1~16.04 [1186 B]
18-Apr-2018 21:43:11 Get:37 http://archive.ubuntu.com/ubuntu xenial/main amd64 python-numpy amd64 1:1.11.0-1ubuntu1 [1763 kB]
18-Apr-2018 21:43:11 debconf: delaying package configuration, since apt-utils is not installed
18-Apr-2018 21:43:11 Fetched 62.5 MB in 3s (19.8 MB/s)
18-Apr-2018 21:43:12 Selecting previously unselected package libgmp10:amd64.
18-Apr-2018 21:43:12 (Reading database ...
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18-Apr-2018 21:43:12 (Reading database ... 6036 files and directories currently installed.)
18-Apr-2018 21:43:12 Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ...
18-Apr-2018 21:43:12 Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ...
18-Apr-2018 21:43:12 Selecting previously unselected package libmpfr4:amd64.
18-Apr-2018 21:43:12 Preparing to unpack .../libmpfr4_3.1.4-1_amd64.deb ...
18-Apr-2018 21:43:13 Unpacking libmpfr4:amd64 (3.1.4-1) ...
18-Apr-2018 21:43:13 Selecting previously unselected package libmpc3:amd64.
18-Apr-2018 21:43:13 Preparing to unpack .../libmpc3_1.0.3-1_amd64.deb ...
18-Apr-2018 21:43:13 Unpacking libmpc3:amd64 (1.0.3-1) ...
18-Apr-2018 21:43:15 Selecting previously unselected package manpages.
18-Apr-2018 21:43:15 Preparing to unpack .../manpages_4.04-2_all.deb ...
18-Apr-2018 21:43:15 Unpacking manpages (4.04-2) ...
18-Apr-2018 21:43:16 Selecting previously unselected package binutils.
18-Apr-2018 21:43:16 Preparing to unpack .../binutils_2.26.1-1ubuntu1~16.04.6_amd64.deb ...
18-Apr-2018 21:43:16 Unpacking binutils (2.26.1-1ubuntu1~16.04.6) ...
18-Apr-2018 21:43:17 Selecting previously unselected package libisl15:amd64.
18-Apr-2018 21:43:17 Preparing to unpack .../libisl15_0.16.1-1_amd64.deb ...
18-Apr-2018 21:43:17 Unpacking libisl15:amd64 (0.16.1-1) ...
18-Apr-2018 21:43:18 Selecting previously unselected package cpp-5.
18-Apr-2018 21:43:18 Preparing to unpack .../cpp-5_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:18 Unpacking cpp-5 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:19 Selecting previously unselected package cpp.
18-Apr-2018 21:43:19 Preparing to unpack .../cpp_4%3a5.3.1-1ubuntu1_amd64.deb ...
18-Apr-2018 21:43:19 Unpacking cpp (4:5.3.1-1ubuntu1) ...
18-Apr-2018 21:43:20 Selecting previously unselected package libcc1-0:amd64.
18-Apr-2018 21:43:20 Preparing to unpack .../libcc1-0_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:20 Unpacking libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:21 Selecting previously unselected package libgomp1:amd64.
18-Apr-2018 21:43:21 Preparing to unpack .../libgomp1_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:21 Unpacking libgomp1:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:22 Selecting previously unselected package libitm1:amd64.
18-Apr-2018 21:43:22 Preparing to unpack .../libitm1_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:22 Unpacking libitm1:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:22 Selecting previously unselected package libatomic1:amd64.
18-Apr-2018 21:43:22 Preparing to unpack .../libatomic1_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:22 Unpacking libatomic1:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:23 Selecting previously unselected package libasan2:amd64.
18-Apr-2018 21:43:23 Preparing to unpack .../libasan2_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:23 Unpacking libasan2:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:24 Selecting previously unselected package liblsan0:amd64.
18-Apr-2018 21:43:24 Preparing to unpack .../liblsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:24 Unpacking liblsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:24 Selecting previously unselected package libtsan0:amd64.
18-Apr-2018 21:43:24 Preparing to unpack .../libtsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:24 Unpacking libtsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:25 Selecting previously unselected package libubsan0:amd64.
18-Apr-2018 21:43:25 Preparing to unpack .../libubsan0_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:25 Unpacking libubsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:26 Selecting previously unselected package libcilkrts5:amd64.
18-Apr-2018 21:43:26 Preparing to unpack .../libcilkrts5_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:26 Unpacking libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:26 Selecting previously unselected package libmpx0:amd64.
18-Apr-2018 21:43:26 Preparing to unpack .../libmpx0_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:26 Unpacking libmpx0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:27 Selecting previously unselected package libquadmath0:amd64.
18-Apr-2018 21:43:27 Preparing to unpack .../libquadmath0_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:27 Unpacking libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:27 Selecting previously unselected package libgcc-5-dev:amd64.
18-Apr-2018 21:43:27 Preparing to unpack .../libgcc-5-dev_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:27 Unpacking libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:28 Selecting previously unselected package gcc-5.
18-Apr-2018 21:43:28 Preparing to unpack .../gcc-5_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:28 Unpacking gcc-5 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:31 Selecting previously unselected package gcc.
18-Apr-2018 21:43:31 Preparing to unpack .../gcc_4%3a5.3.1-1ubuntu1_amd64.deb ...
18-Apr-2018 21:43:31 Unpacking gcc (4:5.3.1-1ubuntu1) ...
18-Apr-2018 21:43:31 Selecting previously unselected package libblas-common.
18-Apr-2018 21:43:31 Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_amd64.deb ...
18-Apr-2018 21:43:31 Unpacking libblas-common (3.6.0-2ubuntu2) ...
18-Apr-2018 21:43:32 Selecting previously unselected package libblas3.
18-Apr-2018 21:43:32 Preparing to unpack .../libblas3_3.6.0-2ubuntu2_amd64.deb ...
18-Apr-2018 21:43:32 Unpacking libblas3 (3.6.0-2ubuntu2) ...
18-Apr-2018 21:43:32 Selecting previously unselected package libc-dev-bin.
18-Apr-2018 21:43:32 Preparing to unpack .../libc-dev-bin_2.23-0ubuntu10_amd64.deb ...
18-Apr-2018 21:43:32 Unpacking libc-dev-bin (2.23-0ubuntu10) ...
18-Apr-2018 21:43:33 Selecting previously unselected package linux-libc-dev:amd64.
18-Apr-2018 21:43:33 Preparing to unpack .../linux-libc-dev_4.4.0-119.143_amd64.deb ...
18-Apr-2018 21:43:33 Unpacking linux-libc-dev:amd64 (4.4.0-119.143) ...
18-Apr-2018 21:43:34 Selecting previously unselected package libc6-dev:amd64.
18-Apr-2018 21:43:34 Preparing to unpack .../libc6-dev_2.23-0ubuntu10_amd64.deb ...
18-Apr-2018 21:43:34 Unpacking libc6-dev:amd64 (2.23-0ubuntu10) ...
18-Apr-2018 21:43:35 Selecting previously unselected package libexpat1-dev:amd64.
18-Apr-2018 21:43:35 Preparing to unpack .../libexpat1-dev_2.1.0-7ubuntu0.16.04.3_amd64.deb ...
18-Apr-2018 21:43:36 Unpacking libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ...
18-Apr-2018 21:43:36 Selecting previously unselected package libgfortran3:amd64.
18-Apr-2018 21:43:36 Preparing to unpack .../libgfortran3_5.4.0-6ubuntu1~16.04.9_amd64.deb ...
18-Apr-2018 21:43:36 Unpacking libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:37 Selecting previously unselected package liblapack3.
18-Apr-2018 21:43:37 Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ...
18-Apr-2018 21:43:37 Unpacking liblapack3 (3.6.0-2ubuntu2) ...
18-Apr-2018 21:43:38 Selecting previously unselected package libpython2.7:amd64.
18-Apr-2018 21:43:38 Preparing to unpack .../libpython2.7_2.7.12-1ubuntu0~16.04.3_amd64.deb ...
18-Apr-2018 21:43:38 Unpacking libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.3) ...
18-Apr-2018 21:43:39 Selecting previously unselected package libpython2.7-dev:amd64.
18-Apr-2018 21:43:39 Preparing to unpack .../libpython2.7-dev_2.7.12-1ubuntu0~16.04.3_amd64.deb ...
18-Apr-2018 21:43:39 Unpacking libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.3) ...
18-Apr-2018 21:43:42 Selecting previously unselected package libpython-dev:amd64.
18-Apr-2018 21:43:42 Preparing to unpack .../libpython-dev_2.7.12-1~16.04_amd64.deb ...
18-Apr-2018 21:43:42 Unpacking libpython-dev:amd64 (2.7.12-1~16.04) ...
18-Apr-2018 21:43:43 Selecting previously unselected package manpages-dev.
18-Apr-2018 21:43:43 Preparing to unpack .../manpages-dev_4.04-2_all.deb ...
18-Apr-2018 21:43:43 Unpacking manpages-dev (4.04-2) ...
18-Apr-2018 21:43:44 Selecting previously unselected package python2.7-dev.
18-Apr-2018 21:43:44 Preparing to unpack .../python2.7-dev_2.7.12-1ubuntu0~16.04.3_amd64.deb ...
18-Apr-2018 21:43:44 Unpacking python2.7-dev (2.7.12-1ubuntu0~16.04.3) ...
18-Apr-2018 21:43:45 Selecting previously unselected package python-dev.
18-Apr-2018 21:43:45 Preparing to unpack .../python-dev_2.7.12-1~16.04_amd64.deb ...
18-Apr-2018 21:43:45 Unpacking python-dev (2.7.12-1~16.04) ...
18-Apr-2018 21:43:46 Selecting previously unselected package python-numpy.
18-Apr-2018 21:43:46 Preparing to unpack .../python-numpy_1%3a1.11.0-1ubuntu1_amd64.deb ...
18-Apr-2018 21:43:46 Unpacking python-numpy (1:1.11.0-1ubuntu1) ...
18-Apr-2018 21:43:47 Processing triggers for libc-bin (2.23-0ubuntu10) ...
18-Apr-2018 21:43:47 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ...
18-Apr-2018 21:43:47 Setting up libmpfr4:amd64 (3.1.4-1) ...
18-Apr-2018 21:43:48 Setting up libmpc3:amd64 (1.0.3-1) ...
18-Apr-2018 21:43:48 Setting up manpages (4.04-2) ...
18-Apr-2018 21:43:48 Setting up binutils (2.26.1-1ubuntu1~16.04.6) ...
18-Apr-2018 21:43:48 Setting up libisl15:amd64 (0.16.1-1) ...
18-Apr-2018 21:43:49 Setting up cpp-5 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:49 Setting up cpp (4:5.3.1-1ubuntu1) ...
18-Apr-2018 21:43:49 Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:50 Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:50 Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:51 Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:52 Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:52 Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:52 Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:52 Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:52 Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:53 Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:53 Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:53 Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:53 Setting up gcc-5 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:53 Setting up gcc (4:5.3.1-1ubuntu1) ...
18-Apr-2018 21:43:54 Setting up libblas-common (3.6.0-2ubuntu2) ...
18-Apr-2018 21:43:54 Setting up libblas3 (3.6.0-2ubuntu2) ...
18-Apr-2018 21:43:54 update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
18-Apr-2018 21:43:54 Setting up libc-dev-bin (2.23-0ubuntu10) ...
18-Apr-2018 21:43:54 Setting up linux-libc-dev:amd64 (4.4.0-119.143) ...
18-Apr-2018 21:43:55 Setting up libc6-dev:amd64 (2.23-0ubuntu10) ...
18-Apr-2018 21:43:55 Setting up libexpat1-dev:amd64 (2.1.0-7ubuntu0.16.04.3) ...
18-Apr-2018 21:43:55 Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.9) ...
18-Apr-2018 21:43:55 Setting up liblapack3 (3.6.0-2ubuntu2) ...
18-Apr-2018 21:43:55 update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
18-Apr-2018 21:43:56 Setting up libpython2.7:amd64 (2.7.12-1ubuntu0~16.04.3) ...
18-Apr-2018 21:43:56 Setting up libpython2.7-dev:amd64 (2.7.12-1ubuntu0~16.04.3) ...
18-Apr-2018 21:43:56 Setting up libpython-dev:amd64 (2.7.12-1~16.04) ...
18-Apr-2018 21:43:57 Setting up manpages-dev (4.04-2) ...
18-Apr-2018 21:43:57 Setting up python2.7-dev (2.7.12-1ubuntu0~16.04.3) ...
18-Apr-2018 21:43:57 Setting up python-dev (2.7.12-1~16.04) ...
18-Apr-2018 21:43:58 Setting up python-numpy (1:1.11.0-1ubuntu1) ...
18-Apr-2018 21:44:00 Processing triggers for libc-bin (2.23-0ubuntu10) ...
18-Apr-2018 21:44:01 Collecting Flask==0.10.1 (from -r /home/clowder/requirements.txt (line 1))
18-Apr-2018 21:44:01   Downloading https://files.pythonhosted.org/packages/db/9c/149ba60c47d107f85fe52564133348458f093dd5e6b57a5b60ab9ac517bb/Flask-0.10.1.tar.gz (544kB)
18-Apr-2018 21:44:01 Collecting html5lib==0.99999 (from -r /home/clowder/requirements.txt (line 2))
18-Apr-2018 21:44:01   Downloading https://files.pythonhosted.org/packages/0d/0f/6e7a4171c150e4c52cff10184697a63dd9eaeae5c7b7f5023ef6b16aaf59/html5lib-0.99999.tar.gz (887kB)
18-Apr-2018 21:44:02 Collecting isodate==0.5.1 (from -r /home/clowder/requirements.txt (line 3))
18-Apr-2018 21:44:02   Downloading https://files.pythonhosted.org/packages/4a/98/07f5bb685219005c3a5788ebe492561c44a75d6b690446667ab508ef070d/isodate-0.5.1.tar.gz
18-Apr-2018 21:44:02 Collecting itsdangerous==0.24 (from -r /home/clowder/requirements.txt (line 4))
18-Apr-2018 21:44:02   Downloading https://files.pythonhosted.org/packages/dc/b4/a60bcdba945c00f6d608d8975131ab3f25b22f2bcfe1dab221165194b2d4/itsdangerous-0.24.tar.gz (46kB)
18-Apr-2018 21:44:02 Collecting Jinja2==2.7.3 (from -r /home/clowder/requirements.txt (line 5))
18-Apr-2018 21:44:02   Downloading https://files.pythonhosted.org/packages/b0/73/eab0bca302d6d6a0b5c402f47ad1760dc9cb2dd14bbc1873ad48db258e4d/Jinja2-2.7.3.tar.gz (378kB)
18-Apr-2018 21:44:02 Collecting MarkupSafe==0.23 (from -r /home/clowder/requirements.txt (line 6))
18-Apr-2018 21:44:02   Downloading https://files.pythonhosted.org/packages/c0/41/bae1254e0396c0cc8cf1751cb7d9afc90a602353695af5952530482c963f/MarkupSafe-0.23.tar.gz
18-Apr-2018 21:44:03 Collecting nltk==3.0.3 (from -r /home/clowder/requirements.txt (line 7))
18-Apr-2018 21:44:03   Downloading https://files.pythonhosted.org/packages/69/3e/b5e0e0210931539a3f77e0537e2e462b929b019a723895bd69357ad20bc3/nltk-3.0.3.tar.gz (1.0MB)
18-Apr-2018 21:44:03 Collecting pika==0.10.0 (from -r /home/clowder/requirements.txt (line 9))
18-Apr-2018 21:44:03   Downloading https://files.pythonhosted.org/packages/26/12/400cf0aca6b1ecf1f00dcd89b246e7a4c8558677304ba067167b8167e714/pika-0.10.0-py2.py3-none-any.whl (92kB)
18-Apr-2018 21:44:03 Collecting pyparsing==2.0.3 (from -r /home/clowder/requirements.txt (line 11))
18-Apr-2018 21:44:03   Downloading https://files.pythonhosted.org/packages/8f/f4/3a70b5e5b865b1ec45fe48dc5a57cd4facb5c7bd80e5cb1255c362732e81/pyparsing-2.0.3-py2.py3-none-any.whl
18-Apr-2018 21:44:03 Collecting rdflib==4.2.0 (from -r /home/clowder/requirements.txt (line 12))
18-Apr-2018 21:44:03   Downloading https://files.pythonhosted.org/packages/23/13/cb881e853fa0ed79e35dbd527a98cb986c3e0d5fae8ebfdb6ef3cffb6298/rdflib-4.2.0.tar.gz (881kB)
18-Apr-2018 21:44:05 Collecting requests==2.7.0 (from -r /home/clowder/requirements.txt (line 13))
18-Apr-2018 21:44:05   Downloading https://files.pythonhosted.org/packages/26/ff/c71b3943bebdd9f7ceb9e137296370587eb0b33fe2eb3732ae168bc45204/requests-2.7.0-py2.py3-none-any.whl (470kB)
18-Apr-2018 21:44:05 Collecting six==1.9.0 (from -r /home/clowder/requirements.txt (line 14))
18-Apr-2018 21:44:05   Downloading https://files.pythonhosted.org/packages/10/e3/a7f8eea80a9fa8358c1cd89ef489bc03675e69e54ed2982cd6f2a28d8295/six-1.9.0-py2.py3-none-any.whl
18-Apr-2018 21:44:05 Collecting SPARQLWrapper==1.6.4 (from -r /home/clowder/requirements.txt (line 15))
18-Apr-2018 21:44:05   Downloading https://files.pythonhosted.org/packages/6b/07/751e164e2e5debc18eb92fbe0798a62d668af8801c8adf38b6f32bcc5eed/SPARQLWrapper-1.6.4.tar.gz
18-Apr-2018 21:44:05 Collecting Werkzeug==0.10.4 (from -r /home/clowder/requirements.txt (line 16))
18-Apr-2018 21:44:05   Downloading https://files.pythonhosted.org/packages/49/0c/e33c2caec86a7926186f7d454f6a901f45f05ad90337c6972d170b9ee806/Werkzeug-0.10.4-py2.py3-none-any.whl (293kB)
18-Apr-2018 21:44:06 Collecting wheel==0.24.0 (from -r /home/clowder/requirements.txt (line 17))
18-Apr-2018 21:44:11   Downloading https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl (63kB)
18-Apr-2018 21:44:11 Building wheels for collected packages: Flask, html5lib, isodate, itsdangerous, Jinja2, MarkupSafe, nltk, rdflib, SPARQLWrapper
18-Apr-2018 21:44:11   Running setup.py bdist_wheel for Flask: started
18-Apr-2018 21:44:11   Running setup.py bdist_wheel for Flask: finished with status 'error'
18-Apr-2018 21:44:11   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3NYRzq/Flask/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmp_8fqmEpip-wheel- --python-tag cp27:
18-Apr-2018 21:44:11   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
18-Apr-2018 21:44:11      or: -c --help [cmd1 cmd2 ...]
18-Apr-2018 21:44:11      or: -c --help-commands
18-Apr-2018 21:44:11      or: -c cmd --help
18-Apr-2018 21:44:11  
18-Apr-2018 21:44:11   error: invalid command 'bdist_wheel'
18-Apr-2018 21:44:11  
18-Apr-2018 21:44:11   ----------------------------------------
18-Apr-2018 21:44:11   Failed building wheel for Flask
18-Apr-2018 21:44:11   Running setup.py clean for Flask
18-Apr-2018 21:44:11   Running setup.py bdist_wheel for html5lib: started
18-Apr-2018 21:44:11   Running setup.py bdist_wheel for html5lib: finished with status 'error'
18-Apr-2018 21:44:11   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3NYRzq/html5lib/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmptAebLXpip-wheel- --python-tag cp27:
18-Apr-2018 21:44:11   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
18-Apr-2018 21:44:11      or: -c --help [cmd1 cmd2 ...]
18-Apr-2018 21:44:11      or: -c --help-commands
18-Apr-2018 21:44:11      or: -c cmd --help
18-Apr-2018 21:44:11  
18-Apr-2018 21:44:11   error: invalid command 'bdist_wheel'
18-Apr-2018 21:44:11  
18-Apr-2018 21:44:11   ----------------------------------------
18-Apr-2018 21:44:11   Failed building wheel for html5lib
18-Apr-2018 21:44:11   Running setup.py clean for html5lib
18-Apr-2018 21:44:11   Running setup.py bdist_wheel for isodate: started
18-Apr-2018 21:44:11   Running setup.py bdist_wheel for isodate: finished with status 'error'
18-Apr-2018 21:44:11   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3NYRzq/isodate/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpbZM0Lepip-wheel- --python-tag cp27:
18-Apr-2018 21:44:11   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
18-Apr-2018 21:44:11      or: -c --help [cmd1 cmd2 ...]
18-Apr-2018 21:44:11      or: -c --help-commands
18-Apr-2018 21:44:11      or: -c cmd --help
18-Apr-2018 21:44:11  
18-Apr-2018 21:44:11   error: invalid command 'bdist_wheel'
18-Apr-2018 21:44:11  
18-Apr-2018 21:44:11   ----------------------------------------
18-Apr-2018 21:44:11   Failed building wheel for isodate
18-Apr-2018 21:44:11   Running setup.py clean for isodate
18-Apr-2018 21:44:12   Running setup.py bdist_wheel for itsdangerous: started
18-Apr-2018 21:44:12   Running setup.py bdist_wheel for itsdangerous: finished with status 'error'
18-Apr-2018 21:44:12   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3NYRzq/itsdangerous/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpMgeORypip-wheel- --python-tag cp27:
18-Apr-2018 21:44:12   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
18-Apr-2018 21:44:12      or: -c --help [cmd1 cmd2 ...]
18-Apr-2018 21:44:12      or: -c --help-commands
18-Apr-2018 21:44:12      or: -c cmd --help
18-Apr-2018 21:44:12  
18-Apr-2018 21:44:12   error: invalid command 'bdist_wheel'
18-Apr-2018 21:44:12  
18-Apr-2018 21:44:12   ----------------------------------------
18-Apr-2018 21:44:12   Failed building wheel for itsdangerous
18-Apr-2018 21:44:12   Running setup.py clean for itsdangerous
18-Apr-2018 21:44:12   Running setup.py bdist_wheel for Jinja2: started
18-Apr-2018 21:44:12   Running setup.py bdist_wheel for Jinja2: finished with status 'error'
18-Apr-2018 21:44:12   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3NYRzq/Jinja2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpT0GEevpip-wheel- --python-tag cp27:
18-Apr-2018 21:44:12   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
18-Apr-2018 21:44:12      or: -c --help [cmd1 cmd2 ...]
18-Apr-2018 21:44:12      or: -c --help-commands
18-Apr-2018 21:44:12      or: -c cmd --help
18-Apr-2018 21:44:12  
18-Apr-2018 21:44:12   error: invalid command 'bdist_wheel'
18-Apr-2018 21:44:12  
18-Apr-2018 21:44:12   ----------------------------------------
18-Apr-2018 21:44:12   Failed building wheel for Jinja2
18-Apr-2018 21:44:12   Running setup.py clean for Jinja2
18-Apr-2018 21:44:12   Running setup.py bdist_wheel for MarkupSafe: started
18-Apr-2018 21:44:12   Running setup.py bdist_wheel for MarkupSafe: finished with status 'error'
18-Apr-2018 21:44:12   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3NYRzq/MarkupSafe/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmp6bwzmvpip-wheel- --python-tag cp27:
18-Apr-2018 21:44:12   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
18-Apr-2018 21:44:12      or: -c --help [cmd1 cmd2 ...]
18-Apr-2018 21:44:12      or: -c --help-commands
18-Apr-2018 21:44:12      or: -c cmd --help
18-Apr-2018 21:44:12  
18-Apr-2018 21:44:12   error: invalid command 'bdist_wheel'
18-Apr-2018 21:44:12  
18-Apr-2018 21:44:12   ----------------------------------------
18-Apr-2018 21:44:12   Failed building wheel for MarkupSafe
18-Apr-2018 21:44:12   Running setup.py clean for MarkupSafe
18-Apr-2018 21:44:12   Running setup.py bdist_wheel for nltk: started
18-Apr-2018 21:44:13   Running setup.py bdist_wheel for nltk: finished with status 'error'
18-Apr-2018 21:44:13   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3NYRzq/nltk/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpqtbQEEpip-wheel- --python-tag cp27:
18-Apr-2018 21:44:13   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
18-Apr-2018 21:44:13      or: -c --help [cmd1 cmd2 ...]
18-Apr-2018 21:44:13      or: -c --help-commands
18-Apr-2018 21:44:13      or: -c cmd --help
18-Apr-2018 21:44:13  
18-Apr-2018 21:44:13   error: invalid command 'bdist_wheel'
18-Apr-2018 21:44:13  
18-Apr-2018 21:44:13   ----------------------------------------
18-Apr-2018 21:44:13   Failed building wheel for nltk
18-Apr-2018 21:44:13   Running setup.py clean for nltk
18-Apr-2018 21:44:13   Running setup.py bdist_wheel for rdflib: started
18-Apr-2018 21:44:13   Running setup.py bdist_wheel for rdflib: finished with status 'error'
18-Apr-2018 21:44:13   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3NYRzq/rdflib/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpHwiEnPpip-wheel- --python-tag cp27:
18-Apr-2018 21:44:13   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
18-Apr-2018 21:44:13      or: -c --help [cmd1 cmd2 ...]
18-Apr-2018 21:44:13      or: -c --help-commands
18-Apr-2018 21:44:13      or: -c cmd --help
18-Apr-2018 21:44:13  
18-Apr-2018 21:44:13   error: invalid command 'bdist_wheel'
18-Apr-2018 21:44:13  
18-Apr-2018 21:44:13   ----------------------------------------
18-Apr-2018 21:44:13   Failed building wheel for rdflib
18-Apr-2018 21:44:13   Running setup.py clean for rdflib
18-Apr-2018 21:44:13   Running setup.py bdist_wheel for SPARQLWrapper: started
18-Apr-2018 21:44:13   Running setup.py bdist_wheel for SPARQLWrapper: finished with status 'error'
18-Apr-2018 21:44:13   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-3NYRzq/SPARQLWrapper/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpmjumKepip-wheel- --python-tag cp27:
18-Apr-2018 21:44:13   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
18-Apr-2018 21:44:13      or: -c --help [cmd1 cmd2 ...]
18-Apr-2018 21:44:13      or: -c --help-commands
18-Apr-2018 21:44:13      or: -c cmd --help
18-Apr-2018 21:44:13  
18-Apr-2018 21:44:13   error: invalid command 'bdist_wheel'
18-Apr-2018 21:44:13  
18-Apr-2018 21:44:13   ----------------------------------------
18-Apr-2018 21:44:13   Failed building wheel for SPARQLWrapper
18-Apr-2018 21:44:13   Running setup.py clean for SPARQLWrapper
18-Apr-2018 21:44:13 Failed to build Flask html5lib isodate itsdangerous Jinja2 MarkupSafe nltk rdflib SPARQLWrapper
18-Apr-2018 21:44:13 Installing collected packages: Werkzeug, MarkupSafe, Jinja2, itsdangerous, Flask, six, html5lib, isodate, nltk, pika, pyparsing, SPARQLWrapper, rdflib, requests, wheel
18-Apr-2018 21:44:13   Running setup.py install for MarkupSafe: started
18-Apr-2018 21:44:14     Running setup.py install for MarkupSafe: finished with status 'done'
18-Apr-2018 21:44:14   Running setup.py install for Jinja2: started
18-Apr-2018 21:44:14     Running setup.py install for Jinja2: finished with status 'done'
18-Apr-2018 21:44:14   Running setup.py install for itsdangerous: started
18-Apr-2018 21:44:14     Running setup.py install for itsdangerous: finished with status 'done'
18-Apr-2018 21:44:14   Running setup.py install for Flask: started
18-Apr-2018 21:44:15     Running setup.py install for Flask: finished with status 'done'
18-Apr-2018 21:44:15   Running setup.py install for html5lib: started
18-Apr-2018 21:44:15     Running setup.py install for html5lib: finished with status 'done'
18-Apr-2018 21:44:15   Running setup.py install for isodate: started
18-Apr-2018 21:44:15     Running setup.py install for isodate: finished with status 'done'
18-Apr-2018 21:44:15   Running setup.py install for nltk: started
18-Apr-2018 21:44:16     Running setup.py install for nltk: finished with status 'done'
18-Apr-2018 21:44:16   Found existing installation: pika 0.11.2
18-Apr-2018 21:44:16     Uninstalling pika-0.11.2:
18-Apr-2018 21:44:18       Successfully uninstalled pika-0.11.2
18-Apr-2018 21:44:18   Running setup.py install for SPARQLWrapper: started
18-Apr-2018 21:44:18     Running setup.py install for SPARQLWrapper: finished with status 'done'
18-Apr-2018 21:44:18   Running setup.py install for rdflib: started
18-Apr-2018 21:44:19     Running setup.py install for rdflib: finished with status 'done'
18-Apr-2018 21:44:19   Found existing installation: requests 2.18.4
18-Apr-2018 21:44:19     Uninstalling requests-2.18.4:
18-Apr-2018 21:44:20       Successfully uninstalled requests-2.18.4
18-Apr-2018 21:44:20 Successfully installed Flask-0.10.1 Jinja2-2.7.3 MarkupSafe-0.23 SPARQLWrapper-1.6.4 Werkzeug-0.10.4 html5lib-0.99999 isodate-0.5.1 itsdangerous-0.24 nltk-3.0.3 pika-0.10.0 pyparsing-2.0.3 rdflib-4.2.0 requests-2.7.0 six-1.9.0 wheel-0.24.0
18-Apr-2018 21:44:21 You are using pip version 8.1.1, however version 10.0.0 is available.
18-Apr-2018 21:44:21 You should consider upgrading via the 'pip install --upgrade pip' command.
18-Apr-2018 21:44:24 Removing intermediate container ff6482be06cf
18-Apr-2018 21:44:24 ---> 4ade0f22f20e
18-Apr-2018 21:44:24 Step 6/13 : USER clowder
18-Apr-2018 21:44:25 ---> Running in a7fa5254193f
18-Apr-2018 21:44:25 Removing intermediate container a7fa5254193f
18-Apr-2018 21:44:25 ---> 67a4d66c703b
18-Apr-2018 21:44:25 Step 7/13 : COPY namedentityrecognition.py /home/clowder/
18-Apr-2018 21:44:26 ---> 138f6a2f57c9
18-Apr-2018 21:44:26 Step 8/13 : RUN /home/clowder/namedentityrecognition.py
18-Apr-2018 21:44:26 ---> Running in cc2a77cc2e14
18-Apr-2018 21:44:27 linux spec user: unable to find user clowder: no matching entries in passwd file
18-Apr-2018 21:44:27 docker.sh: 53: exit: Illegal number: -1
18-Apr-2018 21:44:27 FAILED build of ./Dockerfile
18-Apr-2018 21:44:27 Failing task since return code of [/bin/sh docker.sh] was 2 while expected 0
18-Apr-2018 21:44:27 Finished task 'docker build' with result: Failed
18-Apr-2018 21:44:27 Running post build plugin 'Docker Container Cleanup'
18-Apr-2018 21:44:27 Running post build plugin 'NCover Results Collector'
18-Apr-2018 21:44:27 Running post build plugin 'Clover Results Collector'
18-Apr-2018 21:44:27 Running post build plugin 'npm Cache Cleanup'
18-Apr-2018 21:44:27 Running post build plugin 'Artifact Copier'
18-Apr-2018 21:44:27 Finalising the build...
18-Apr-2018 21:44:27 Stopping timer.
18-Apr-2018 21:44:27 Build CATS-EXDBP-JOB1-35 completed.
18-Apr-2018 21:44:27 Running on server: post build plugin 'NCover Results Collector'
18-Apr-2018 21:44:27 Running on server: post build plugin 'Build Hanging Detection Configuration'
18-Apr-2018 21:44:27 Running on server: post build plugin 'Clover Delta Calculator'
18-Apr-2018 21:44:27 Running on server: post build plugin 'Maven Dependencies Postprocessor'
18-Apr-2018 21:44:27 All post build plugins have finished
18-Apr-2018 21:44:27 Generating build results summary...
18-Apr-2018 21:44:27 Saving build results to disk...
18-Apr-2018 21:44:27 Logging substituted variables...
18-Apr-2018 21:44:27 Indexing build results...
18-Apr-2018 21:44:27 Finished building CATS-EXDBP-JOB1-35.