Build #20

Plan branch:

Build: #20 failed

Job: Default Job failed

Stages & jobs

  1. Default Stage

Build log

The build generated 204 lines of output. Download or view full build log.

30-Oct-2019 13:25:42 Build Clowder - extractors-versus - develop - Default Job #20 (CATS-EXVS3-JOB1-20) started building on agent buildserver-1.os.ncsa.edu
30-Oct-2019 13:25:42 Remote agent on host buildserver-1.os.ncsa.edu
30-Oct-2019 13:25:42 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1
30-Oct-2019 13:25:42 Executing build Clowder - extractors-versus - develop - Default Job #20 (CATS-EXVS3-JOB1-20)
30-Oct-2019 13:25:42 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
30-Oct-2019 13:25:42 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1
30-Oct-2019 13:25:42 Updating source code to revision: 4e52ca879b93da1a44a052b7f0f4a81e5ec846be
30-Oct-2019 13:25:42 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache/028abc0833feb852a5a64e1b819288ff57cc0604/.git'.
30-Oct-2019 13:25:42 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache/028abc0833feb852a5a64e1b819288ff57cc0604/.git/
30-Oct-2019 13:25:43 Fetching 'refs/heads/develop' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-versus.git'.
30-Oct-2019 13:25:43 Warning: Permanently added '[127.0.0.1]:37346' (RSA) to the list of known hosts.
30-Oct-2019 13:25:44 From ssh://127.0.0.1:37346/cats/extractors-versus
30-Oct-2019 13:25:44 * [new branch]      develop    -> develop
30-Oct-2019 13:25:44 * [new tag]         browndog_v0.3.0 -> browndog_v0.3.0
30-Oct-2019 13:25:44 * [new tag]         browndog_v0.2.0 -> browndog_v0.2.0
30-Oct-2019 13:25:44 Checking out revision 4e52ca879b93da1a44a052b7f0f4a81e5ec846be.
30-Oct-2019 13:25:44 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/.git'.
30-Oct-2019 13:25:44 Cloning into '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1'...
30-Oct-2019 13:25:44 done.
30-Oct-2019 13:25:44 Switched to a new branch 'develop'
30-Oct-2019 13:25:44 Branch develop set up to track remote branch develop from origin.
30-Oct-2019 13:25:44 Updated source code to revision: 4e52ca879b93da1a44a052b7f0f4a81e5ec846be
30-Oct-2019 13:25:44 Finished task 'Checkout Default Repository' with result: Success
30-Oct-2019 13:25:44 Running pre-build action: VCS Version Collector
30-Oct-2019 13:25:44 Starting task 'assembly' of type 'com.atlassian.bamboo.plugins.maven:task.builder.mvn2'
30-Oct-2019 13:25:44
Beginning to execute external process for build 'Clowder - extractors-versus - develop - Default Job #20 (CATS-EXVS3-JOB1-20)'
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30-Oct-2019 13:25:46 [INFO] Scanning for projects...
30-Oct-2019 13:25:46 [INFO] ------------------------------------------------------------------------
30-Oct-2019 13:25:46 [INFO] Building VersusMediciExtractor
30-Oct-2019 13:25:46 [INFO]    task-segment: [clean]
30-Oct-2019 13:25:46 [INFO] ------------------------------------------------------------------------
30-Oct-2019 13:25:46 [INFO] [clean:clean {execution: default-clean}]
30-Oct-2019 13:25:46 [INFO] ------------------------------------------------------------------------
30-Oct-2019 13:25:46 [INFO] Building VersusMediciExtractor
30-Oct-2019 13:25:46 [INFO]    task-segment: [assembly:assembly] (aggregator-style)
30-Oct-2019 13:25:46 [INFO] ------------------------------------------------------------------------
30-Oct-2019 13:25:46 [INFO] Preparing assembly:assembly
30-Oct-2019 13:25:46 [INFO] ------------------------------------------------------------------------
30-Oct-2019 13:25:46 [INFO] Building VersusMediciExtractor
30-Oct-2019 13:25:46 [INFO] ------------------------------------------------------------------------
30-Oct-2019 13:25:47 [INFO] [resources:resources {execution: default-resources}]
30-Oct-2019 13:25:47 [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent!
30-Oct-2019 13:25:47 [INFO] Copying 1 resource
30-Oct-2019 13:25:47 [WARNING] While downloading xml-apis:xml-apis:2.0.2
30-Oct-2019 13:25:47   This artifact has been relocated to xml-apis:xml-apis:1.0.b2.
30-Oct-2019 13:25:47
30-Oct-2019 13:25:47
30-Oct-2019 13:25:47 [INFO] [compiler:compile {execution: default-compile}]
30-Oct-2019 13:25:47 [WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent!
30-Oct-2019 13:25:47 [INFO] Compiling 2 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/target/classes
30-Oct-2019 13:25:48 [INFO] [resources:testResources {execution: default-testResources}]
30-Oct-2019 13:25:48 [WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent!
30-Oct-2019 13:25:48 [INFO] skip non existing resourceDirectory /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/src/test/resources
30-Oct-2019 13:25:48 [INFO] [compiler:testCompile {execution: default-testCompile}]
30-Oct-2019 13:25:48 [WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent!
30-Oct-2019 13:25:48 [INFO] Compiling 1 source file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/target/test-classes
30-Oct-2019 13:25:49 [INFO] [surefire:test {execution: default-test}]
30-Oct-2019 13:25:49 [INFO] Tests are skipped.
30-Oct-2019 13:25:51 [INFO] [dependency:copy-dependencies {execution: default}]
30-Oct-2019 13:25:51 [INFO] Copying jackson-annotations-2.4.3.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/jackson-annotations-2.4.3.jar
30-Oct-2019 13:25:51 [INFO] Copying versus-census-0.0.1-SNAPSHOT.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/versus-census-0.0.1-SNAPSHOT.jar
30-Oct-2019 13:25:51 [INFO] Copying log4j-1.2.17.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/log4j-1.2.17.jar
30-Oct-2019 13:25:51 [INFO] Copying commons-io-2.4.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/commons-io-2.4.jar
30-Oct-2019 13:25:51 [INFO] Copying jackson-databind-2.4.3.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/jackson-databind-2.4.3.jar
30-Oct-2019 13:25:51 [INFO] Copying xmlParserAPIs-2.0.2.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/xmlParserAPIs-2.0.2.jar
30-Oct-2019 13:25:51 [INFO] Copying amqp-client-3.0.2.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/amqp-client-3.0.2.jar
30-Oct-2019 13:25:51 [INFO] Copying im2learn-2.0-SNAPSHOT.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/im2learn-2.0-SNAPSHOT.jar
30-Oct-2019 13:25:51 [INFO] Copying jackson-core-2.4.3.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/jackson-core-2.4.3.jar
30-Oct-2019 13:25:51 [INFO] Copying commons-logging-1.1.3.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/commons-logging-1.1.3.jar
30-Oct-2019 13:25:51 [INFO] Copying junit-3.8.1.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/junit-3.8.1.jar
30-Oct-2019 13:25:51 [INFO] Copying xml-apis-1.0.b2.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/xml-apis-1.0.b2.jar
30-Oct-2019 13:25:51 [INFO] Copying versus-image-0.6.0-SNAPSHOT.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/versus-image-0.6.0-SNAPSHOT.jar
30-Oct-2019 13:25:51 [INFO] Copying versus-service-0.6.0-SNAPSHOT.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/versus-service-0.6.0-SNAPSHOT.jar
30-Oct-2019 13:25:51 [INFO] Copying jmimemagic-0.1.2.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/jmimemagic-0.1.2.jar
30-Oct-2019 13:25:51 [INFO] Copying oro-2.0.8.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/oro-2.0.8.jar
30-Oct-2019 13:25:51 [INFO] Copying versus-core-0.6.0-SNAPSHOT.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/versus-core-0.6.0-SNAPSHOT.jar
30-Oct-2019 13:25:51 [INFO] Copying xercesImpl-2.4.0.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/xercesImpl-2.4.0.jar
30-Oct-2019 13:25:51 [INFO] Copying json-simple-1.1.1.jar to /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/lib/maven/json-simple-1.1.1.jar
30-Oct-2019 13:25:51 [INFO] [jar:jar {execution: default-jar}]
30-Oct-2019 13:25:51 [INFO] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/target/VersusMediciExtractor-1.0.0-SNAPSHOT.jar
30-Oct-2019 13:25:52 [INFO] [assembly:single {execution: make-assembly}]
30-Oct-2019 13:25:52 [INFO] Reading assembly descriptor: src/assemble/distribution.xml
30-Oct-2019 13:25:52 [INFO] Building tar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/target/VersusMediciExtractor-1.0.0-SNAPSHOT-bin.tar.gz
30-Oct-2019 13:25:53 [INFO] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/target/VersusMediciExtractor-1.0.0-SNAPSHOT-bin.zip
30-Oct-2019 13:25:53 [INFO] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/target/VersusMediciExtractor-1.0.0-SNAPSHOT-jar-with-dependencies.jar
30-Oct-2019 13:25:54 [INFO] [assembly:assembly {execution: default-cli}]
30-Oct-2019 13:25:54 [INFO] Reading assembly descriptor: src/assemble/distribution.xml
30-Oct-2019 13:25:54 [INFO] Building tar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/target/VersusMediciExtractor-1.0.0-SNAPSHOT-bin.tar.gz
30-Oct-2019 13:25:54 [INFO] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/target/VersusMediciExtractor-1.0.0-SNAPSHOT-bin.zip
30-Oct-2019 13:25:54 [INFO] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-EXVS3-JOB1/target/VersusMediciExtractor-1.0.0-SNAPSHOT-jar-with-dependencies.jar
30-Oct-2019 13:25:55 [INFO] ------------------------------------------------------------------------
30-Oct-2019 13:25:55 [INFO] BUILD SUCCESSFUL
30-Oct-2019 13:25:55 [INFO] ------------------------------------------------------------------------
30-Oct-2019 13:25:55 [INFO] Total time: 9 seconds
30-Oct-2019 13:25:55 [INFO] Finished at: Wed Oct 30 13:25:55 CDT 2019
30-Oct-2019 13:25:55 [INFO] Final Memory: 61M/702M
30-Oct-2019 13:25:55 [INFO] ------------------------------------------------------------------------
30-Oct-2019 13:25:55 Finished task 'assembly' with result: Success
30-Oct-2019 13:25:55 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
30-Oct-2019 13:25:55
Beginning to execute external process for build 'Clowder - extractors-versus - develop - Default Job #20 (CATS-EXVS3-JOB1-20)'
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/bin/sh docker.sh
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30-Oct-2019 13:25:56 Sending build context to Docker daemon  41.75MB
30-Oct-2019 13:25:56
30-Oct-2019 13:25:56 Step 1/9 : FROM java:8
30-Oct-2019 13:25:56 8: Pulling from library/java
30-Oct-2019 13:25:56 5040bd298390: Pulling fs layer
30-Oct-2019 13:25:56 fce5728aad85: Pulling fs layer
30-Oct-2019 13:25:56 76610ec20bf5: Pulling fs layer
30-Oct-2019 13:25:56 60170fec2151: Pulling fs layer
30-Oct-2019 13:25:56 e98f73de8f0d: Pulling fs layer
30-Oct-2019 13:25:56 11f7af24ed9c: Pulling fs layer
30-Oct-2019 13:25:56 49e2d6393f32: Pulling fs layer
30-Oct-2019 13:25:56 60170fec2151: Waiting
30-Oct-2019 13:25:56 e98f73de8f0d: Waiting
30-Oct-2019 13:25:56 11f7af24ed9c: Waiting
30-Oct-2019 13:25:56 bb9cdec9c7f3: Pulling fs layer
30-Oct-2019 13:25:56 49e2d6393f32: Waiting
30-Oct-2019 13:25:56 bb9cdec9c7f3: Waiting
30-Oct-2019 13:25:57 fce5728aad85: Verifying Checksum
30-Oct-2019 13:25:57 fce5728aad85: Download complete
30-Oct-2019 13:25:57 60170fec2151: Verifying Checksum
30-Oct-2019 13:25:57 60170fec2151: Download complete
30-Oct-2019 13:25:57 e98f73de8f0d: Verifying Checksum
30-Oct-2019 13:25:57 e98f73de8f0d: Download complete
30-Oct-2019 13:25:57 76610ec20bf5: Verifying Checksum
30-Oct-2019 13:25:57 76610ec20bf5: Download complete
30-Oct-2019 13:25:57 11f7af24ed9c: Verifying Checksum
30-Oct-2019 13:25:57 11f7af24ed9c: Download complete
30-Oct-2019 13:25:58 bb9cdec9c7f3: Verifying Checksum
30-Oct-2019 13:25:58 bb9cdec9c7f3: Download complete
30-Oct-2019 13:25:58 5040bd298390: Verifying Checksum
30-Oct-2019 13:25:58 5040bd298390: Download complete
30-Oct-2019 13:26:00 5040bd298390: Pull complete
30-Oct-2019 13:26:01 49e2d6393f32: Verifying Checksum
30-Oct-2019 13:26:01 49e2d6393f32: Download complete
30-Oct-2019 13:26:02 fce5728aad85: Pull complete
30-Oct-2019 13:26:05 76610ec20bf5: Pull complete
30-Oct-2019 13:26:05 60170fec2151: Pull complete
30-Oct-2019 13:26:05 e98f73de8f0d: Pull complete
30-Oct-2019 13:26:06 11f7af24ed9c: Pull complete
30-Oct-2019 13:26:12 49e2d6393f32: Pull complete
30-Oct-2019 13:26:13 bb9cdec9c7f3: Pull complete
30-Oct-2019 13:26:13 Digest: sha256:c1ff613e8ba25833d2e1940da0940c3824f03f802c449f3d1815a66b7f8c0e9d
30-Oct-2019 13:26:13 Status: Downloaded newer image for java:8
30-Oct-2019 13:26:13 ---> d23bdf5b1b1b
30-Oct-2019 13:26:13 Step 2/9 : MAINTAINER Smruti Padhy <spadhy@illinois.edu>
30-Oct-2019 13:26:14 ---> Running in a97e9a0d5e40
30-Oct-2019 13:26:15 Removing intermediate container a97e9a0d5e40
30-Oct-2019 13:26:15 ---> f2330c61f4e6
30-Oct-2019 13:26:15 Step 3/9 : ENV RABBITMQ_URI=""     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_VHOST="%2F"     RABBITMQ_QUEUE="ncsa.versus.image"     REGISTRATION_ENDPOINTS="https://clowder.ncsa.illinois.edu/extractors"
30-Oct-2019 13:26:15 ---> Running in abd8bb526937
30-Oct-2019 13:26:16 Removing intermediate container abd8bb526937
30-Oct-2019 13:26:16 ---> e78f496b7a71
30-Oct-2019 13:26:16 Step 4/9 : RUN apt-get update && apt-get -y install netcat
30-Oct-2019 13:26:16 ---> Running in d3da9d6494cf
30-Oct-2019 13:26:29 Get:1 http://security.debian.org jessie/updates InRelease [44.9 kB]
30-Oct-2019 13:26:32 Ign http://deb.debian.org jessie InRelease
30-Oct-2019 13:26:32 Get:2 http://deb.debian.org jessie-updates InRelease [16.3 kB]
30-Oct-2019 13:26:32 Ign http://deb.debian.org jessie-backports InRelease
30-Oct-2019 13:26:32 Get:3 http://deb.debian.org jessie Release.gpg [1652 B]
30-Oct-2019 13:26:32 Ign http://deb.debian.org jessie-backports Release.gpg
30-Oct-2019 13:26:32 Get:4 http://deb.debian.org jessie Release [77.3 kB]
30-Oct-2019 13:26:32 Ign http://deb.debian.org jessie-backports Release
30-Oct-2019 13:26:32 Err http://deb.debian.org jessie-backports/main amd64 Packages
30-Oct-2019 13:26:32  
30-Oct-2019 13:26:32 Err http://deb.debian.org jessie-backports/main amd64 Packages
30-Oct-2019 13:26:32  
30-Oct-2019 13:26:32 Err http://deb.debian.org jessie-backports/main amd64 Packages
30-Oct-2019 13:26:32  
30-Oct-2019 13:26:32 Err http://deb.debian.org jessie-backports/main amd64 Packages
30-Oct-2019 13:26:32  
30-Oct-2019 13:26:32 Err http://deb.debian.org jessie-backports/main amd64 Packages
30-Oct-2019 13:26:32   404  Not Found
30-Oct-2019 13:26:34 Get:5 http://security.debian.org jessie/updates/main amd64 Packages [895 kB]
30-Oct-2019 13:26:38 Get:6 http://deb.debian.org jessie-updates/main amd64 Packages [20 B]
30-Oct-2019 13:26:38 Get:7 http://deb.debian.org jessie/main amd64 Packages [9098 kB]
30-Oct-2019 13:26:39 Fetched 10.1 MB in 13s (746 kB/s)
30-Oct-2019 13:26:39 W: There is no public key available for the following key IDs:
30-Oct-2019 13:26:39 AA8E81B4331F7F50
30-Oct-2019 13:26:39 W: Failed to fetch http://deb.debian.org/debian/dists/jessie-backports/main/binary-amd64/Packages  404  Not Found
30-Oct-2019 13:26:39
30-Oct-2019 13:26:39 E: Some index files failed to download. They have been ignored, or old ones used instead.
30-Oct-2019 13:26:40 The command '/bin/sh -c apt-get update && apt-get -y install netcat' returned a non-zero code: 100
30-Oct-2019 13:26:40 FAILED build of ./Dockerfile
30-Oct-2019 13:26:40 docker.sh: 78: exit: Illegal number: -1
30-Oct-2019 13:26:40 Failing task since return code of [/bin/sh docker.sh] was 2 while expected 0
30-Oct-2019 13:26:40 Finished task 'docker build' with result: Failed
30-Oct-2019 13:26:40 Running post build plugin 'Docker Container Cleanup'
30-Oct-2019 13:26:40 Running post build plugin 'NCover Results Collector'
30-Oct-2019 13:26:40 Running post build plugin 'Clover Results Collector'
30-Oct-2019 13:26:40 Running post build plugin 'npm Cache Cleanup'
30-Oct-2019 13:26:40 Running post build plugin 'Artifact Copier'
30-Oct-2019 13:26:40 Finalising the build...
30-Oct-2019 13:26:40 Stopping timer.
30-Oct-2019 13:26:40 Build CATS-EXVS3-JOB1-20 completed.
30-Oct-2019 13:26:40 Running on server: post build plugin 'NCover Results Collector'
30-Oct-2019 13:26:40 Running on server: post build plugin 'Build Hanging Detection Configuration'
30-Oct-2019 13:26:40 Running on server: post build plugin 'Clover Delta Calculator'
30-Oct-2019 13:26:40 Running on server: post build plugin 'Maven Dependencies Postprocessor'
30-Oct-2019 13:26:40 All post build plugins have finished
30-Oct-2019 13:26:40 Generating build results summary...
30-Oct-2019 13:26:40 Saving build results to disk...
30-Oct-2019 13:26:40 Logging substituted variables...
30-Oct-2019 13:26:40 Indexing build results...
30-Oct-2019 13:26:40 Finished building CATS-EXVS3-JOB1-20.