Build: #35 was successful
Job: Default Job was successful
Build log
The build generated 1,057 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 18-Apr-2018 17:19:04 | The following additional packages will be installed: |
| 18-Apr-2018 17:19:04 | libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 |
| 18-Apr-2018 17:19:04 | x11-common |
| 18-Apr-2018 17:19:04 | The following NEW packages will be installed: |
| 18-Apr-2018 17:19:04 | libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 |
| 18-Apr-2018 17:19:04 | libxext6 libxmu6 libxt6 wget x11-common |
| 18-Apr-2018 17:19:05 | 0 upgraded, 13 newly installed, 0 to remove and 43 not upgraded. |
| 18-Apr-2018 17:19:05 | Need to get 1402 kB of archives. |
| 18-Apr-2018 17:19:05 | After this operation, 5596 kB of additional disk space will be used. |
| 18-Apr-2018 17:19:05 | Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] |
| 18-Apr-2018 17:19:05 | Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] |
| 18-Apr-2018 17:19:05 | Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] |
| 18-Apr-2018 17:19:05 | Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] |
| 18-Apr-2018 17:19:05 | Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] |
| 18-Apr-2018 17:19:05 | Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] |
| 18-Apr-2018 17:19:05 | Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB] |
| 18-Apr-2018 17:19:05 | Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] |
| 18-Apr-2018 17:19:05 | Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] |
| 18-Apr-2018 17:19:05 | Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] |
| 18-Apr-2018 17:19:05 | Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.3 [299 kB] |
| 18-Apr-2018 17:19:05 | Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] |
| 18-Apr-2018 17:19:05 | Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] |
| 18-Apr-2018 17:19:06 | debconf: delaying package configuration, since apt-utils is not installed |
| 18-Apr-2018 17:19:06 | Fetched 1402 kB in 0s (1515 kB/s) |
| 18-Apr-2018 17:19:06 | Selecting previously unselected package libxau6:amd64. |
| 18-Apr-2018 17:19:06 | (Reading database ... |
| 18-Apr-2018 17:19:06 | (Reading database ... 5% |
| 18-Apr-2018 17:19:06 | (Reading database ... 10% |
| 18-Apr-2018 17:19:06 | (Reading database ... 15% |
| 18-Apr-2018 17:19:06 | (Reading database ... 20% |
| 18-Apr-2018 17:19:06 | (Reading database ... 25% |
| 18-Apr-2018 17:19:06 | (Reading database ... 30% |
| 18-Apr-2018 17:19:06 | (Reading database ... 35% |
| 18-Apr-2018 17:19:06 | (Reading database ... 40% |
| 18-Apr-2018 17:19:06 | (Reading database ... 45% |
| 18-Apr-2018 17:19:06 | (Reading database ... 50% |
| 18-Apr-2018 17:19:06 | (Reading database ... 55% |
| 18-Apr-2018 17:19:06 | (Reading database ... 60% |
| 18-Apr-2018 17:19:06 | (Reading database ... 65% |
| 18-Apr-2018 17:19:06 | (Reading database ... 70% |
| 18-Apr-2018 17:19:06 | (Reading database ... 75% |
| 18-Apr-2018 17:19:06 | (Reading database ... 80% |
| 18-Apr-2018 17:19:06 | (Reading database ... 85% |
| 18-Apr-2018 17:19:06 | (Reading database ... 90% |
| 18-Apr-2018 17:19:06 | (Reading database ... 95% |
| 18-Apr-2018 17:19:06 | (Reading database ... 100% |
| 18-Apr-2018 17:19:06 | (Reading database ... 6101 files and directories currently installed.) |
| 18-Apr-2018 17:19:06 | Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... |
| 18-Apr-2018 17:19:06 | Unpacking libxau6:amd64 (1:1.0.8-1) ... |
| 18-Apr-2018 17:19:07 | Selecting previously unselected package libxdmcp6:amd64. |
| 18-Apr-2018 17:19:07 | Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... |
| 18-Apr-2018 17:19:07 | Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 18-Apr-2018 17:19:08 | Selecting previously unselected package libxcb1:amd64. |
| 18-Apr-2018 17:19:08 | Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... |
| 18-Apr-2018 17:19:08 | Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 18-Apr-2018 17:19:08 | Selecting previously unselected package libx11-data. |
| 18-Apr-2018 17:19:08 | Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2_all.deb ... |
| 18-Apr-2018 17:19:08 | Unpacking libx11-data (2:1.6.3-1ubuntu2) ... |
| 18-Apr-2018 17:19:09 | Selecting previously unselected package libx11-6:amd64. |
| 18-Apr-2018 17:19:09 | Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2_amd64.deb ... |
| 18-Apr-2018 17:19:09 | Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2) ... |
| 18-Apr-2018 17:19:10 | Selecting previously unselected package libxext6:amd64. |
| 18-Apr-2018 17:19:10 | Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... |
| 18-Apr-2018 17:19:10 | Unpacking libxext6:amd64 (2:1.3.3-1) ... |
| 18-Apr-2018 17:19:11 | Selecting previously unselected package x11-common. |
| 18-Apr-2018 17:19:11 | Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3_all.deb ... |
| 18-Apr-2018 17:19:11 | Unpacking x11-common (1:7.7+13ubuntu3) ... |
| 18-Apr-2018 17:19:12 | Selecting previously unselected package libice6:amd64. |
| 18-Apr-2018 17:19:12 | Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... |
| 18-Apr-2018 17:19:12 | Unpacking libice6:amd64 (2:1.0.9-1) ... |
| 18-Apr-2018 17:19:14 | Selecting previously unselected package libsm6:amd64. |
| 18-Apr-2018 17:19:14 | Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... |
| 18-Apr-2018 17:19:14 | Unpacking libsm6:amd64 (2:1.2.2-1) ... |
| 18-Apr-2018 17:19:15 | Selecting previously unselected package libidn11:amd64. |
| 18-Apr-2018 17:19:15 | Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... |
| 18-Apr-2018 17:19:15 | Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 18-Apr-2018 17:19:16 | Selecting previously unselected package wget. |
| 18-Apr-2018 17:19:16 | Preparing to unpack .../wget_1.17.1-1ubuntu1.3_amd64.deb ... |
| 18-Apr-2018 17:19:16 | Unpacking wget (1.17.1-1ubuntu1.3) ... |
| 18-Apr-2018 17:19:17 | Selecting previously unselected package libxt6:amd64. |
| 18-Apr-2018 17:19:17 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 18-Apr-2018 17:19:17 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 18-Apr-2018 17:19:18 | Selecting previously unselected package libxmu6:amd64. |
| 18-Apr-2018 17:19:18 | Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... |
| 18-Apr-2018 17:19:18 | Unpacking libxmu6:amd64 (2:1.1.2-2) ... |
| 18-Apr-2018 17:19:18 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 18-Apr-2018 17:19:18 | Processing triggers for systemd (229-4ubuntu19) ... |
| 18-Apr-2018 17:19:19 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 18-Apr-2018 17:19:19 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 18-Apr-2018 17:19:19 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 18-Apr-2018 17:19:20 | Setting up libx11-data (2:1.6.3-1ubuntu2) ... |
| 18-Apr-2018 17:19:20 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ... |
| 18-Apr-2018 17:19:20 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 18-Apr-2018 17:19:21 | Setting up x11-common (1:7.7+13ubuntu3) ... |
| 18-Apr-2018 17:19:23 | debconf: unable to initialize frontend: Dialog |
| 18-Apr-2018 17:19:23 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 18-Apr-2018 17:19:23 | debconf: falling back to frontend: Readline |
| 18-Apr-2018 17:19:23 | debconf: unable to initialize frontend: Readline |
| 18-Apr-2018 17:19:23 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
| 18-Apr-2018 17:19:23 | debconf: falling back to frontend: Teletype |
| 18-Apr-2018 17:19:23 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 18-Apr-2018 17:19:23 | invoke-rc.d: could not determine current runlevel |
| 18-Apr-2018 17:19:23 | invoke-rc.d: policy-rc.d denied execution of start. |
| 18-Apr-2018 17:19:23 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 18-Apr-2018 17:19:23 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 18-Apr-2018 17:19:24 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 18-Apr-2018 17:19:24 | Setting up wget (1.17.1-1ubuntu1.3) ... |
| 18-Apr-2018 17:19:24 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 18-Apr-2018 17:19:25 | Setting up libxmu6:amd64 (2:1.1.2-2) ... |
| 18-Apr-2018 17:19:25 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 18-Apr-2018 17:19:25 | Processing triggers for systemd (229-4ubuntu19) ... |
| 18-Apr-2018 17:19:27 | Removing intermediate container 5689f2d41b92 |
| 18-Apr-2018 17:19:27 | ---> 3b85732d8c98 |
| 18-Apr-2018 17:19:27 | Step 8/11 : USER clowder |
| 18-Apr-2018 17:19:28 | ---> Running in 82387c13df1a |
| 18-Apr-2018 17:19:28 | Removing intermediate container 82387c13df1a |
| 18-Apr-2018 17:19:28 | ---> d80b9bd311d3 |
| 18-Apr-2018 17:19:28 | Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ |
| 18-Apr-2018 17:19:30 | ---> 8b415eba15fc |
| 18-Apr-2018 17:19:30 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 17:19:30 | ---> Running in 73400d9700ae |
| 18-Apr-2018 17:19:31 | Removing intermediate container 73400d9700ae |
| 18-Apr-2018 17:19:31 | ---> 492d3d285daa |
| 18-Apr-2018 17:19:31 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 17:19:31 | ---> Running in 54d593711e34 |
| 18-Apr-2018 17:19:32 | Removing intermediate container 54d593711e34 |
| 18-Apr-2018 17:19:32 | ---> 48c1c411b9b7 |
| 18-Apr-2018 17:19:32 | Successfully built 48c1c411b9b7 |
| 18-Apr-2018 17:19:32 | Successfully tagged 17576:latest |
| 18-Apr-2018 17:19:32 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 18-Apr-2018 17:19:32 | a2ffe2e4f347: Preparing |
| 18-Apr-2018 17:19:32 | 41c6ef0756f7: Preparing |
| 18-Apr-2018 17:19:32 | 80d567800b34: Preparing |
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| 18-Apr-2018 17:19:32 | a2022691bf95: Preparing |
| 18-Apr-2018 17:19:32 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:19:32 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:19:32 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:19:32 | c56153825175: Waiting |
| 18-Apr-2018 17:19:32 | ae620432889d: Waiting |
| 18-Apr-2018 17:19:32 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:19:32 | a2022691bf95: Waiting |
| 18-Apr-2018 17:19:33 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:19:33 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:19:33 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:19:33 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:19:33 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:19:33 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:19:33 | c56153825175: Layer already exists |
| 18-Apr-2018 17:19:33 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:19:33 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:19:34 | a2ffe2e4f347: Pushed |
| 18-Apr-2018 17:19:34 | 41c6ef0756f7: Pushed |
| 18-Apr-2018 17:19:34 | 80d567800b34: Pushed |
| 18-Apr-2018 17:19:37 | browndog_v0.2.0: digest: sha256:6b03848eec43baa01d47e32c994b064d9ea0cc3b081dfce35dc2cd1053da45e2 size: 2826 |
| 18-Apr-2018 17:19:37 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 18-Apr-2018 17:19:37 | a2ffe2e4f347: Preparing |
| 18-Apr-2018 17:19:37 | 41c6ef0756f7: Preparing |
| 18-Apr-2018 17:19:37 | 80d567800b34: Preparing |
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| 18-Apr-2018 17:19:37 | a2022691bf95: Preparing |
| 18-Apr-2018 17:19:37 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:19:37 | ae620432889d: Waiting |
| 18-Apr-2018 17:19:37 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:19:37 | c56153825175: Waiting |
| 18-Apr-2018 17:19:37 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:19:37 | a2022691bf95: Waiting |
| 18-Apr-2018 17:19:37 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:19:38 | 80d567800b34: Layer already exists |
| 18-Apr-2018 17:19:38 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:19:38 | 41c6ef0756f7: Layer already exists |
| 18-Apr-2018 17:19:38 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:19:38 | a2ffe2e4f347: Layer already exists |
| 18-Apr-2018 17:19:38 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:19:38 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:19:38 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:19:38 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:19:38 | c56153825175: Layer already exists |
| 18-Apr-2018 17:19:38 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:19:38 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:19:38 | browndog_v0.3.0: digest: sha256:6b03848eec43baa01d47e32c994b064d9ea0cc3b081dfce35dc2cd1053da45e2 size: 2826 |
| 18-Apr-2018 17:19:39 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 18-Apr-2018 17:19:39 | a2ffe2e4f347: Preparing |
| 18-Apr-2018 17:19:39 | 41c6ef0756f7: Preparing |
| 18-Apr-2018 17:19:39 | 80d567800b34: Preparing |
| 18-Apr-2018 17:19:39 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 17:19:39 | f2297bdfc824: Preparing |
| 18-Apr-2018 17:19:39 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 17:19:39 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 17:19:39 | 7f7a065d245a: Preparing |
| 18-Apr-2018 17:19:39 | f96e6b25195f: Preparing |
| 18-Apr-2018 17:19:39 | c56153825175: Preparing |
| 18-Apr-2018 17:19:39 | ae620432889d: Preparing |
| 18-Apr-2018 17:19:39 | a2022691bf95: Preparing |
| 18-Apr-2018 17:19:39 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:19:39 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:19:39 | c56153825175: Waiting |
| 18-Apr-2018 17:19:39 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:19:39 | ae620432889d: Waiting |
| 18-Apr-2018 17:19:39 | a2022691bf95: Waiting |
| 18-Apr-2018 17:19:39 | a2ffe2e4f347: Layer already exists |
| 18-Apr-2018 17:19:39 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:19:39 | 41c6ef0756f7: Layer already exists |
| 18-Apr-2018 17:19:39 | 80d567800b34: Layer already exists |
| 18-Apr-2018 17:19:39 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:19:39 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:19:39 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:19:39 | c56153825175: Layer already exists |
| 18-Apr-2018 17:19:39 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:19:39 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:19:39 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:19:40 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:19:40 | latest: digest: sha256:6b03848eec43baa01d47e32c994b064d9ea0cc3b081dfce35dc2cd1053da45e2 size: 2826 |
| 18-Apr-2018 17:19:40 | Untagged: 17576:latest |
| 18-Apr-2018 17:19:40 | Sending build context to Docker daemon 67.07kB |
| 18-Apr-2018 17:19:40 | |
| 18-Apr-2018 17:19:40 | Step 1/11 : FROM clowder/pyclowder:1 |
| 18-Apr-2018 17:19:40 | ---> d1a9e970ed30 |
| 18-Apr-2018 17:19:40 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 18-Apr-2018 17:19:40 | ---> Running in 79d7ff2098a5 |
| 18-Apr-2018 17:19:41 | Removing intermediate container 79d7ff2098a5 |
| 18-Apr-2018 17:19:41 | ---> 46bf81116550 |
| 18-Apr-2018 17:19:41 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" |
| 18-Apr-2018 17:19:41 | ---> Running in 70d108ad9a77 |
| 18-Apr-2018 17:19:41 | Removing intermediate container 70d108ad9a77 |
| 18-Apr-2018 17:19:41 | ---> dd2ad7a1b589 |
| 18-Apr-2018 17:19:41 | Step 4/11 : USER root |
| 18-Apr-2018 17:19:42 | ---> Running in 9d27546844b4 |
| 18-Apr-2018 17:19:42 | Removing intermediate container 9d27546844b4 |
| 18-Apr-2018 17:19:42 | ---> 91c3848d3f31 |
| 18-Apr-2018 17:19:42 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 18-Apr-2018 17:19:43 | ---> c75c51142d7c |
| 18-Apr-2018 17:19:43 | Step 6/11 : RUN pip install --upgrade pip |
| 18-Apr-2018 17:19:43 | ---> Running in f69a3194a099 |
| 18-Apr-2018 17:19:45 | Collecting pip |
| 18-Apr-2018 17:19:45 | Downloading https://files.pythonhosted.org/packages/62/a1/0d452b6901b0157a0134fd27ba89bf95a857fbda64ba52e1ca2cf61d8412/pip-10.0.0-py2.py3-none-any.whl (1.3MB) |
| 18-Apr-2018 17:19:45 | Installing collected packages: pip |
| 18-Apr-2018 17:19:45 | Found existing installation: pip 8.1.1 |
| 18-Apr-2018 17:19:45 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 18-Apr-2018 17:19:46 | Successfully installed pip-10.0.0 |
| 18-Apr-2018 17:19:47 | Removing intermediate container f69a3194a099 |
| 18-Apr-2018 17:19:47 | ---> 1c0d3f87f103 |
| 18-Apr-2018 17:19:47 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 18-Apr-2018 17:19:48 | ---> Running in 237c06055c8d |
| 18-Apr-2018 17:19:48 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 18-Apr-2018 17:19:48 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 18-Apr-2018 17:19:49 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 18-Apr-2018 17:19:49 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 18-Apr-2018 17:19:49 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 18-Apr-2018 17:19:49 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 18-Apr-2018 17:19:50 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 18-Apr-2018 17:19:51 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 18-Apr-2018 17:19:51 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 18-Apr-2018 17:19:52 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 18-Apr-2018 17:19:52 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 18-Apr-2018 17:19:52 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 18-Apr-2018 17:19:52 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 18-Apr-2018 17:19:52 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 18-Apr-2018 17:19:52 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 18-Apr-2018 17:19:52 | Running setup.py install for openpyxl: started |
| 18-Apr-2018 17:19:52 | Running setup.py install for openpyxl: finished with status 'done' |
| 18-Apr-2018 17:19:52 | Found existing installation: pika 0.11.0 |
| 18-Apr-2018 17:19:52 | Uninstalling pika-0.11.0: |
| 18-Apr-2018 17:19:55 | Successfully uninstalled pika-0.11.0 |
| 18-Apr-2018 17:19:55 | Running setup.py install for pika: started |
| 18-Apr-2018 17:19:55 | Running setup.py install for pika: finished with status 'done' |
| 18-Apr-2018 17:19:55 | Running setup.py install for pymongo: started |
| 18-Apr-2018 17:19:55 | Running setup.py install for pymongo: finished with status 'done' |
| 18-Apr-2018 17:19:55 | Running setup.py install for pytz: started |
| 18-Apr-2018 17:19:56 | Running setup.py install for pytz: finished with status 'done' |
| 18-Apr-2018 17:19:56 | Found existing installation: requests 2.18.4 |
| 18-Apr-2018 17:19:56 | Uninstalling requests-2.18.4: |
| 18-Apr-2018 17:19:58 | Successfully uninstalled requests-2.18.4 |
| 18-Apr-2018 17:19:58 | Running setup.py install for xlrd: started |
| 18-Apr-2018 17:19:59 | Running setup.py install for xlrd: finished with status 'done' |
| 18-Apr-2018 17:19:59 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 18-Apr-2018 17:20:00 | Removing intermediate container 237c06055c8d |
| 18-Apr-2018 17:20:00 | ---> cf2cf73f0483 |
| 18-Apr-2018 17:20:00 | Step 8/11 : USER clowder |
| 18-Apr-2018 17:20:01 | ---> Running in 28dbbc47bc00 |
| 18-Apr-2018 17:20:01 | Removing intermediate container 28dbbc47bc00 |
| 18-Apr-2018 17:20:01 | ---> f3a8548c2226 |
| 18-Apr-2018 17:20:01 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 18-Apr-2018 17:20:02 | ---> bf7cda114213 |
| 18-Apr-2018 17:20:02 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 17:20:02 | ---> Running in 6eeab2104213 |
| 18-Apr-2018 17:20:03 | Removing intermediate container 6eeab2104213 |
| 18-Apr-2018 17:20:03 | ---> 11ec3b401994 |
| 18-Apr-2018 17:20:03 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 17:20:03 | ---> Running in eaf3c3051f0e |
| 18-Apr-2018 17:20:03 | Removing intermediate container eaf3c3051f0e |
| 18-Apr-2018 17:20:03 | ---> e6e961517398 |
| 18-Apr-2018 17:20:03 | Successfully built e6e961517398 |
| 18-Apr-2018 17:20:03 | Successfully tagged 17576:latest |
| 18-Apr-2018 17:20:04 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 18-Apr-2018 17:20:04 | 82cd06ddb546: Preparing |
| 18-Apr-2018 17:20:04 | 72da6a0b7931: Preparing |
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| 18-Apr-2018 17:20:04 | f2297bdfc824: Waiting |
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| 18-Apr-2018 17:20:04 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:20:04 | a2022691bf95: Waiting |
| 18-Apr-2018 17:20:04 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:20:04 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:20:05 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:20:05 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:20:05 | 82cd06ddb546: Pushed |
| 18-Apr-2018 17:20:05 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:20:05 | 273abc9933de: Pushed |
| 18-Apr-2018 17:20:05 | c56153825175: Layer already exists |
| 18-Apr-2018 17:20:05 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:20:06 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:20:06 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:20:06 | cd077f8b5a6d: Pushed |
| 18-Apr-2018 17:20:06 | 72da6a0b7931: Pushed |
| 18-Apr-2018 17:20:08 | browndog_v0.2.0: digest: sha256:5da9646126fd0ebca15b3a4131f98734229fb7e1a42207650f836ae2dd43ca38 size: 3031 |
| 18-Apr-2018 17:20:08 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 18-Apr-2018 17:20:08 | 82cd06ddb546: Preparing |
| 18-Apr-2018 17:20:08 | 72da6a0b7931: Preparing |
| 18-Apr-2018 17:20:08 | cd077f8b5a6d: Preparing |
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| 18-Apr-2018 17:20:08 | ae620432889d: Preparing |
| 18-Apr-2018 17:20:08 | a2022691bf95: Preparing |
| 18-Apr-2018 17:20:08 | f2297bdfc824: Waiting |
| 18-Apr-2018 17:20:08 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:20:08 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:20:08 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:20:08 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:20:08 | c56153825175: Waiting |
| 18-Apr-2018 17:20:08 | ae620432889d: Waiting |
| 18-Apr-2018 17:20:08 | a2022691bf95: Waiting |
| 18-Apr-2018 17:20:09 | 82cd06ddb546: Layer already exists |
| 18-Apr-2018 17:20:09 | 273abc9933de: Layer already exists |
| 18-Apr-2018 17:20:09 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:20:09 | cd077f8b5a6d: Layer already exists |
| 18-Apr-2018 17:20:09 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:20:09 | 72da6a0b7931: Layer already exists |
| 18-Apr-2018 17:20:09 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:20:09 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:20:09 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:20:09 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:20:09 | c56153825175: Layer already exists |
| 18-Apr-2018 17:20:09 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:20:09 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:20:09 | browndog_v0.3.0: digest: sha256:5da9646126fd0ebca15b3a4131f98734229fb7e1a42207650f836ae2dd43ca38 size: 3031 |
| 18-Apr-2018 17:20:10 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 18-Apr-2018 17:20:10 | 82cd06ddb546: Preparing |
| 18-Apr-2018 17:20:10 | 72da6a0b7931: Preparing |
| 18-Apr-2018 17:20:10 | cd077f8b5a6d: Preparing |
| 18-Apr-2018 17:20:10 | 273abc9933de: Preparing |
| 18-Apr-2018 17:20:10 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 17:20:10 | f2297bdfc824: Preparing |
| 18-Apr-2018 17:20:10 | 0fbe2bcb1bf9: Preparing |
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| 18-Apr-2018 17:20:10 | f96e6b25195f: Preparing |
| 18-Apr-2018 17:20:10 | c56153825175: Preparing |
| 18-Apr-2018 17:20:10 | ae620432889d: Preparing |
| 18-Apr-2018 17:20:10 | a2022691bf95: Preparing |
| 18-Apr-2018 17:20:10 | f2297bdfc824: Waiting |
| 18-Apr-2018 17:20:10 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:20:10 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:20:10 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:20:10 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:20:10 | c56153825175: Waiting |
| 18-Apr-2018 17:20:10 | ae620432889d: Waiting |
| 18-Apr-2018 17:20:10 | a2022691bf95: Waiting |
| 18-Apr-2018 17:20:10 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:20:10 | 273abc9933de: Layer already exists |
| 18-Apr-2018 17:20:10 | 72da6a0b7931: Layer already exists |
| 18-Apr-2018 17:20:10 | 82cd06ddb546: Layer already exists |
| 18-Apr-2018 17:20:10 | cd077f8b5a6d: Layer already exists |
| 18-Apr-2018 17:20:10 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:20:10 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:20:10 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:20:10 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:20:11 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:20:11 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:20:11 | c56153825175: Layer already exists |
| 18-Apr-2018 17:20:11 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:20:11 | latest: digest: sha256:5da9646126fd0ebca15b3a4131f98734229fb7e1a42207650f836ae2dd43ca38 size: 3031 |
| 18-Apr-2018 17:20:11 | Untagged: 17576:latest |
| 18-Apr-2018 17:20:11 | Sending build context to Docker daemon 66.05kB |
| 18-Apr-2018 17:20:11 | |
| 18-Apr-2018 17:20:11 | Step 1/11 : FROM clowder/pyclowder:1 |
| 18-Apr-2018 17:20:11 | ---> d1a9e970ed30 |
| 18-Apr-2018 17:20:11 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 18-Apr-2018 17:20:11 | ---> Using cache |
| 18-Apr-2018 17:20:11 | ---> 46bf81116550 |
| 18-Apr-2018 17:20:11 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" |
| 18-Apr-2018 17:20:11 | ---> Running in 6fd3d157c95a |
| 18-Apr-2018 17:20:12 | Removing intermediate container 6fd3d157c95a |
| 18-Apr-2018 17:20:12 | ---> d4b5f9ca7750 |
| 18-Apr-2018 17:20:12 | Step 4/11 : USER root |
| 18-Apr-2018 17:20:12 | ---> Running in 29a7a3dbf225 |
| 18-Apr-2018 17:20:13 | Removing intermediate container 29a7a3dbf225 |
| 18-Apr-2018 17:20:13 | ---> a99230797089 |
| 18-Apr-2018 17:20:13 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 18-Apr-2018 17:20:13 | ---> 065a544b0599 |
| 18-Apr-2018 17:20:13 | Step 6/11 : RUN pip install --upgrade pip |
| 18-Apr-2018 17:20:13 | ---> Running in 0abedfe7f9f0 |
| 18-Apr-2018 17:20:15 | Collecting pip |
| 18-Apr-2018 17:20:15 | Downloading https://files.pythonhosted.org/packages/62/a1/0d452b6901b0157a0134fd27ba89bf95a857fbda64ba52e1ca2cf61d8412/pip-10.0.0-py2.py3-none-any.whl (1.3MB) |
| 18-Apr-2018 17:20:15 | Installing collected packages: pip |
| 18-Apr-2018 17:20:15 | Found existing installation: pip 8.1.1 |
| 18-Apr-2018 17:20:15 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 18-Apr-2018 17:20:16 | Successfully installed pip-10.0.0 |
| 18-Apr-2018 17:20:17 | Removing intermediate container 0abedfe7f9f0 |
| 18-Apr-2018 17:20:17 | ---> df6d2e7d1130 |
| 18-Apr-2018 17:20:17 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 18-Apr-2018 17:20:18 | ---> Running in a6c38786dbd2 |
| 18-Apr-2018 17:20:18 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 18-Apr-2018 17:20:18 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 18-Apr-2018 17:20:18 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 18-Apr-2018 17:20:19 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 18-Apr-2018 17:20:19 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 18-Apr-2018 17:20:19 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 18-Apr-2018 17:20:20 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 18-Apr-2018 17:20:20 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 18-Apr-2018 17:20:20 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 18-Apr-2018 17:20:21 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 18-Apr-2018 17:20:21 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 18-Apr-2018 17:20:21 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 18-Apr-2018 17:20:21 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 18-Apr-2018 17:20:21 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 18-Apr-2018 17:20:21 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 18-Apr-2018 17:20:21 | Running setup.py install for openpyxl: started |
| 18-Apr-2018 17:20:22 | Running setup.py install for openpyxl: finished with status 'done' |
| 18-Apr-2018 17:20:22 | Found existing installation: pika 0.11.0 |
| 18-Apr-2018 17:20:22 | Uninstalling pika-0.11.0: |
| 18-Apr-2018 17:20:25 | Successfully uninstalled pika-0.11.0 |
| 18-Apr-2018 17:20:25 | Running setup.py install for pika: started |
| 18-Apr-2018 17:20:25 | Running setup.py install for pika: finished with status 'done' |
| 18-Apr-2018 17:20:25 | Running setup.py install for pymongo: started |
| 18-Apr-2018 17:20:25 | Running setup.py install for pymongo: finished with status 'done' |
| 18-Apr-2018 17:20:25 | Running setup.py install for pytz: started |
| 18-Apr-2018 17:20:26 | Running setup.py install for pytz: finished with status 'done' |
| 18-Apr-2018 17:20:26 | Found existing installation: requests 2.18.4 |
| 18-Apr-2018 17:20:26 | Uninstalling requests-2.18.4: |
| 18-Apr-2018 17:20:28 | Successfully uninstalled requests-2.18.4 |
| 18-Apr-2018 17:20:28 | Running setup.py install for xlrd: started |
| 18-Apr-2018 17:20:29 | Running setup.py install for xlrd: finished with status 'done' |
| 18-Apr-2018 17:20:29 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 18-Apr-2018 17:20:31 | Removing intermediate container a6c38786dbd2 |
| 18-Apr-2018 17:20:31 | ---> 4de36593cd66 |
| 18-Apr-2018 17:20:31 | Step 8/11 : USER clowder |
| 18-Apr-2018 17:20:31 | ---> Running in 378ca44eb77f |
| 18-Apr-2018 17:20:31 | Removing intermediate container 378ca44eb77f |
| 18-Apr-2018 17:20:31 | ---> 74b4d587dc9f |
| 18-Apr-2018 17:20:31 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 18-Apr-2018 17:20:33 | ---> d386756a41cd |
| 18-Apr-2018 17:20:33 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 17:20:33 | ---> Running in 342d333a6fdb |
| 18-Apr-2018 17:20:34 | Removing intermediate container 342d333a6fdb |
| 18-Apr-2018 17:20:34 | ---> 452106dfbd0f |
| 18-Apr-2018 17:20:34 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 17:20:34 | ---> Running in 86d0cd823fba |
| 18-Apr-2018 17:20:34 | Removing intermediate container 86d0cd823fba |
| 18-Apr-2018 17:20:34 | ---> 1f0d0a7da8dd |
| 18-Apr-2018 17:20:34 | Successfully built 1f0d0a7da8dd |
| 18-Apr-2018 17:20:34 | Successfully tagged 17576:latest |
| 18-Apr-2018 17:20:35 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 18-Apr-2018 17:20:35 | 9ffdd3dc6673: Preparing |
| 18-Apr-2018 17:20:35 | 695eaee0b84c: Preparing |
| 18-Apr-2018 17:20:35 | 4685a92e073c: Preparing |
| 18-Apr-2018 17:20:35 | 1cd7cbd2febc: Preparing |
| 18-Apr-2018 17:20:35 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 17:20:35 | f2297bdfc824: Preparing |
| 18-Apr-2018 17:20:35 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 17:20:35 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 17:20:35 | 7f7a065d245a: Preparing |
| 18-Apr-2018 17:20:35 | f96e6b25195f: Preparing |
| 18-Apr-2018 17:20:35 | c56153825175: Preparing |
| 18-Apr-2018 17:20:35 | ae620432889d: Preparing |
| 18-Apr-2018 17:20:35 | a2022691bf95: Preparing |
| 18-Apr-2018 17:20:35 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:20:35 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:20:35 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:20:35 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:20:35 | c56153825175: Waiting |
| 18-Apr-2018 17:20:35 | ae620432889d: Waiting |
| 18-Apr-2018 17:20:35 | a2022691bf95: Waiting |
| 18-Apr-2018 17:20:35 | f2297bdfc824: Waiting |
| 18-Apr-2018 17:20:35 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:20:35 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:20:36 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:20:36 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:20:36 | 1cd7cbd2febc: Pushed |
| 18-Apr-2018 17:20:36 | 9ffdd3dc6673: Pushed |
| 18-Apr-2018 17:20:36 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:20:36 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:20:36 | c56153825175: Layer already exists |
| 18-Apr-2018 17:20:36 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:20:37 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:20:37 | 4685a92e073c: Pushed |
| 18-Apr-2018 17:20:38 | 695eaee0b84c: Pushed |
| 18-Apr-2018 17:20:40 | browndog_v0.2.0: digest: sha256:e498ced47865dfbf603789504ffd4e791d2553ff6a760e3957a020c866c9b645 size: 3031 |
| 18-Apr-2018 17:20:40 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 18-Apr-2018 17:20:41 | 9ffdd3dc6673: Preparing |
| 18-Apr-2018 17:20:41 | 695eaee0b84c: Preparing |
| 18-Apr-2018 17:20:41 | 4685a92e073c: Preparing |
| 18-Apr-2018 17:20:41 | 1cd7cbd2febc: Preparing |
| 18-Apr-2018 17:20:41 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 17:20:41 | f2297bdfc824: Preparing |
| 18-Apr-2018 17:20:41 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 17:20:41 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 17:20:41 | 7f7a065d245a: Preparing |
| 18-Apr-2018 17:20:41 | f96e6b25195f: Preparing |
| 18-Apr-2018 17:20:41 | c56153825175: Preparing |
| 18-Apr-2018 17:20:41 | ae620432889d: Preparing |
| 18-Apr-2018 17:20:41 | a2022691bf95: Preparing |
| 18-Apr-2018 17:20:41 | f2297bdfc824: Waiting |
| 18-Apr-2018 17:20:41 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:20:41 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:20:41 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:20:41 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:20:41 | c56153825175: Waiting |
| 18-Apr-2018 17:20:41 | ae620432889d: Waiting |
| 18-Apr-2018 17:20:41 | a2022691bf95: Waiting |
| 18-Apr-2018 17:20:41 | 9ffdd3dc6673: Layer already exists |
| 18-Apr-2018 17:20:41 | 4685a92e073c: Layer already exists |
| 18-Apr-2018 17:20:41 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:20:41 | 695eaee0b84c: Layer already exists |
| 18-Apr-2018 17:20:41 | 1cd7cbd2febc: Layer already exists |
| 18-Apr-2018 17:20:41 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:20:41 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:20:41 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:20:41 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:20:41 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:20:41 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:20:41 | c56153825175: Layer already exists |
| 18-Apr-2018 17:20:41 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:20:42 | browndog_v0.3.0: digest: sha256:e498ced47865dfbf603789504ffd4e791d2553ff6a760e3957a020c866c9b645 size: 3031 |
| 18-Apr-2018 17:20:42 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 18-Apr-2018 17:20:42 | 9ffdd3dc6673: Preparing |
| 18-Apr-2018 17:20:42 | 695eaee0b84c: Preparing |
| 18-Apr-2018 17:20:42 | 4685a92e073c: Preparing |
| 18-Apr-2018 17:20:42 | 1cd7cbd2febc: Preparing |
| 18-Apr-2018 17:20:42 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 17:20:42 | f2297bdfc824: Preparing |
| 18-Apr-2018 17:20:42 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 17:20:42 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 17:20:42 | 7f7a065d245a: Preparing |
| 18-Apr-2018 17:20:42 | f96e6b25195f: Preparing |
| 18-Apr-2018 17:20:42 | c56153825175: Preparing |
| 18-Apr-2018 17:20:42 | ae620432889d: Preparing |
| 18-Apr-2018 17:20:42 | a2022691bf95: Preparing |
| 18-Apr-2018 17:20:42 | f2297bdfc824: Waiting |
| 18-Apr-2018 17:20:42 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:20:42 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:20:42 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:20:42 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:20:42 | c56153825175: Waiting |
| 18-Apr-2018 17:20:42 | ae620432889d: Waiting |
| 18-Apr-2018 17:20:42 | a2022691bf95: Waiting |
| 18-Apr-2018 17:20:42 | 9ffdd3dc6673: Layer already exists |
| 18-Apr-2018 17:20:42 | 1cd7cbd2febc: Layer already exists |
| 18-Apr-2018 17:20:42 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:20:42 | 695eaee0b84c: Layer already exists |
| 18-Apr-2018 17:20:43 | 4685a92e073c: Layer already exists |
| 18-Apr-2018 17:20:43 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:20:43 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:20:43 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:20:43 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:20:43 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:20:43 | c56153825175: Layer already exists |
| 18-Apr-2018 17:20:43 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:20:43 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:20:43 | latest: digest: sha256:e498ced47865dfbf603789504ffd4e791d2553ff6a760e3957a020c866c9b645 size: 3031 |
| 18-Apr-2018 17:20:44 | Untagged: 17576:latest |
| 18-Apr-2018 17:20:44 | Sending build context to Docker daemon 198.1kB |
| 18-Apr-2018 17:20:44 | |
| 18-Apr-2018 17:20:44 | Step 1/11 : FROM clowder/pyclowder:1 |
| 18-Apr-2018 17:20:44 | ---> d1a9e970ed30 |
| 18-Apr-2018 17:20:44 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 18-Apr-2018 17:20:44 | ---> Using cache |
| 18-Apr-2018 17:20:44 | ---> 46bf81116550 |
| 18-Apr-2018 17:20:44 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" |
| 18-Apr-2018 17:20:44 | ---> Running in e2a8df738850 |
| 18-Apr-2018 17:20:45 | Removing intermediate container e2a8df738850 |
| 18-Apr-2018 17:20:45 | ---> 6612cb4532ae |
| 18-Apr-2018 17:20:45 | Step 4/11 : USER root |
| 18-Apr-2018 17:20:45 | ---> Running in 2533660be846 |
| 18-Apr-2018 17:20:45 | Removing intermediate container 2533660be846 |
| 18-Apr-2018 17:20:45 | ---> a939e24e5e36 |
| 18-Apr-2018 17:20:45 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 18-Apr-2018 17:20:46 | ---> 796505cd296f |
| 18-Apr-2018 17:20:46 | Step 6/11 : RUN pip install --upgrade pip |
| 18-Apr-2018 17:20:46 | ---> Running in c2ad698548d8 |
| 18-Apr-2018 17:20:48 | Collecting pip |
| 18-Apr-2018 17:20:48 | Downloading https://files.pythonhosted.org/packages/62/a1/0d452b6901b0157a0134fd27ba89bf95a857fbda64ba52e1ca2cf61d8412/pip-10.0.0-py2.py3-none-any.whl (1.3MB) |
| 18-Apr-2018 17:20:48 | Installing collected packages: pip |
| 18-Apr-2018 17:20:48 | Found existing installation: pip 8.1.1 |
| 18-Apr-2018 17:20:48 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 18-Apr-2018 17:20:49 | Successfully installed pip-10.0.0 |
| 18-Apr-2018 17:20:51 | Removing intermediate container c2ad698548d8 |
| 18-Apr-2018 17:20:51 | ---> c39deed02ffe |
| 18-Apr-2018 17:20:51 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 18-Apr-2018 17:20:51 | ---> Running in d6107ea0681e |
| 18-Apr-2018 17:20:52 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 18-Apr-2018 17:20:52 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 18-Apr-2018 17:20:52 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 18-Apr-2018 17:20:52 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 18-Apr-2018 17:20:52 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 18-Apr-2018 17:20:53 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 18-Apr-2018 17:20:53 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 18-Apr-2018 17:20:54 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 18-Apr-2018 17:20:54 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 18-Apr-2018 17:20:54 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 18-Apr-2018 17:20:54 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 18-Apr-2018 17:20:54 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 18-Apr-2018 17:20:54 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 18-Apr-2018 17:20:54 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 18-Apr-2018 17:20:55 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 18-Apr-2018 17:20:55 | Running setup.py install for openpyxl: started |
| 18-Apr-2018 17:20:55 | Running setup.py install for openpyxl: finished with status 'done' |
| 18-Apr-2018 17:20:55 | Found existing installation: pika 0.11.0 |
| 18-Apr-2018 17:20:55 | Uninstalling pika-0.11.0: |
| 18-Apr-2018 17:20:57 | Successfully uninstalled pika-0.11.0 |
| 18-Apr-2018 17:20:57 | Running setup.py install for pika: started |
| 18-Apr-2018 17:20:58 | Running setup.py install for pika: finished with status 'done' |
| 18-Apr-2018 17:20:58 | Running setup.py install for pymongo: started |
| 18-Apr-2018 17:20:58 | Running setup.py install for pymongo: finished with status 'done' |
| 18-Apr-2018 17:20:58 | Running setup.py install for pytz: started |
| 18-Apr-2018 17:20:58 | Running setup.py install for pytz: finished with status 'done' |
| 18-Apr-2018 17:20:58 | Found existing installation: requests 2.18.4 |
| 18-Apr-2018 17:20:58 | Uninstalling requests-2.18.4: |
| 18-Apr-2018 17:21:01 | Successfully uninstalled requests-2.18.4 |
| 18-Apr-2018 17:21:01 | Running setup.py install for xlrd: started |
| 18-Apr-2018 17:21:01 | Running setup.py install for xlrd: finished with status 'done' |
| 18-Apr-2018 17:21:01 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 18-Apr-2018 17:21:03 | Removing intermediate container d6107ea0681e |
| 18-Apr-2018 17:21:03 | ---> 980c152d5e6f |
| 18-Apr-2018 17:21:03 | Step 8/11 : USER clowder |
| 18-Apr-2018 17:21:04 | ---> Running in 6352ab3909ce |
| 18-Apr-2018 17:21:04 | Removing intermediate container 6352ab3909ce |
| 18-Apr-2018 17:21:04 | ---> 79d45cc94dda |
| 18-Apr-2018 17:21:04 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 18-Apr-2018 17:21:05 | ---> 8d367fc2568b |
| 18-Apr-2018 17:21:05 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 17:21:05 | ---> Running in f5e9280dd420 |
| 18-Apr-2018 17:21:06 | Removing intermediate container f5e9280dd420 |
| 18-Apr-2018 17:21:06 | ---> fd6605ff1eed |
| 18-Apr-2018 17:21:06 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 17:21:06 | ---> Running in 86c76271776b |
| 18-Apr-2018 17:21:06 | Removing intermediate container 86c76271776b |
| 18-Apr-2018 17:21:06 | ---> 11a0c838f3da |
| 18-Apr-2018 17:21:06 | Successfully built 11a0c838f3da |
| 18-Apr-2018 17:21:07 | Successfully tagged 17576:latest |
| 18-Apr-2018 17:21:07 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 18-Apr-2018 17:21:07 | 630a4020e5d2: Preparing |
| 18-Apr-2018 17:21:07 | 4d32a6daeb31: Preparing |
| 18-Apr-2018 17:21:07 | 55f1d62ecf61: Preparing |
| 18-Apr-2018 17:21:07 | 51db3fc7aab4: Preparing |
| 18-Apr-2018 17:21:07 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 17:21:07 | f2297bdfc824: Preparing |
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| 18-Apr-2018 17:21:07 | c56153825175: Preparing |
| 18-Apr-2018 17:21:07 | ae620432889d: Preparing |
| 18-Apr-2018 17:21:07 | a2022691bf95: Preparing |
| 18-Apr-2018 17:21:07 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:21:07 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:21:07 | c56153825175: Waiting |
| 18-Apr-2018 17:21:07 | ae620432889d: Waiting |
| 18-Apr-2018 17:21:07 | a2022691bf95: Waiting |
| 18-Apr-2018 17:21:07 | f2297bdfc824: Waiting |
| 18-Apr-2018 17:21:07 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:21:07 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:21:07 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:21:08 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:21:08 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:21:09 | 630a4020e5d2: Pushed |
| 18-Apr-2018 17:21:09 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:21:09 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:21:09 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:21:09 | c56153825175: Layer already exists |
| 18-Apr-2018 17:21:09 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:21:09 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:21:09 | 51db3fc7aab4: Pushed |
| 18-Apr-2018 17:21:11 | 55f1d62ecf61: Pushed |
| 18-Apr-2018 17:21:14 | 4d32a6daeb31: Pushed |
| 18-Apr-2018 17:21:16 | browndog_v0.2.0: digest: sha256:d02b674f2f2d6c69e89b390850093db1ae887220a1daf89ba6881ed7d378b78d size: 3031 |
| 18-Apr-2018 17:21:17 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 18-Apr-2018 17:21:17 | 630a4020e5d2: Preparing |
| 18-Apr-2018 17:21:17 | 4d32a6daeb31: Preparing |
| 18-Apr-2018 17:21:17 | 55f1d62ecf61: Preparing |
| 18-Apr-2018 17:21:17 | 51db3fc7aab4: Preparing |
| 18-Apr-2018 17:21:17 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 17:21:17 | f2297bdfc824: Preparing |
| 18-Apr-2018 17:21:17 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 17:21:17 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 17:21:17 | 7f7a065d245a: Preparing |
| 18-Apr-2018 17:21:17 | f96e6b25195f: Preparing |
| 18-Apr-2018 17:21:17 | c56153825175: Preparing |
| 18-Apr-2018 17:21:17 | ae620432889d: Preparing |
| 18-Apr-2018 17:21:17 | a2022691bf95: Preparing |
| 18-Apr-2018 17:21:17 | f2297bdfc824: Waiting |
| 18-Apr-2018 17:21:17 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:21:17 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:21:17 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:21:17 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:21:17 | c56153825175: Waiting |
| 18-Apr-2018 17:21:17 | ae620432889d: Waiting |
| 18-Apr-2018 17:21:17 | a2022691bf95: Waiting |
| 18-Apr-2018 17:21:17 | 55f1d62ecf61: Layer already exists |
| 18-Apr-2018 17:21:17 | 630a4020e5d2: Layer already exists |
| 18-Apr-2018 17:21:17 | 51db3fc7aab4: Layer already exists |
| 18-Apr-2018 17:21:17 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:21:17 | 4d32a6daeb31: Layer already exists |
| 18-Apr-2018 17:21:17 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:21:17 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:21:17 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:21:17 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:21:17 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:21:17 | c56153825175: Layer already exists |
| 18-Apr-2018 17:21:17 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:21:17 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:21:18 | browndog_v0.3.0: digest: sha256:d02b674f2f2d6c69e89b390850093db1ae887220a1daf89ba6881ed7d378b78d size: 3031 |
| 18-Apr-2018 17:21:18 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 18-Apr-2018 17:21:19 | 630a4020e5d2: Preparing |
| 18-Apr-2018 17:21:19 | 4d32a6daeb31: Preparing |
| 18-Apr-2018 17:21:19 | 55f1d62ecf61: Preparing |
| 18-Apr-2018 17:21:19 | 51db3fc7aab4: Preparing |
| 18-Apr-2018 17:21:19 | 0cdb02ac1d86: Preparing |
| 18-Apr-2018 17:21:19 | f2297bdfc824: Preparing |
| 18-Apr-2018 17:21:19 | 0fbe2bcb1bf9: Preparing |
| 18-Apr-2018 17:21:19 | 59669fcdd5eb: Preparing |
| 18-Apr-2018 17:21:19 | 7f7a065d245a: Preparing |
| 18-Apr-2018 17:21:19 | f96e6b25195f: Preparing |
| 18-Apr-2018 17:21:19 | c56153825175: Preparing |
| 18-Apr-2018 17:21:19 | ae620432889d: Preparing |
| 18-Apr-2018 17:21:19 | a2022691bf95: Preparing |
| 18-Apr-2018 17:21:19 | 7f7a065d245a: Waiting |
| 18-Apr-2018 17:21:19 | f96e6b25195f: Waiting |
| 18-Apr-2018 17:21:19 | c56153825175: Waiting |
| 18-Apr-2018 17:21:19 | ae620432889d: Waiting |
| 18-Apr-2018 17:21:19 | a2022691bf95: Waiting |
| 18-Apr-2018 17:21:19 | f2297bdfc824: Waiting |
| 18-Apr-2018 17:21:19 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:21:19 | 59669fcdd5eb: Waiting |
| 18-Apr-2018 17:21:19 | 4d32a6daeb31: Layer already exists |
| 18-Apr-2018 17:21:19 | 55f1d62ecf61: Layer already exists |
| 18-Apr-2018 17:21:19 | 51db3fc7aab4: Layer already exists |
| 18-Apr-2018 17:21:19 | 630a4020e5d2: Layer already exists |
| 18-Apr-2018 17:21:19 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:21:19 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:21:19 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:21:19 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:21:19 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:21:19 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:21:19 | c56153825175: Layer already exists |
| 18-Apr-2018 17:21:19 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:21:19 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:21:20 | latest: digest: sha256:d02b674f2f2d6c69e89b390850093db1ae887220a1daf89ba6881ed7d378b78d size: 3031 |
| 18-Apr-2018 17:21:20 | Untagged: 17576:latest |
| 18-Apr-2018 17:21:20 | Sending build context to Docker daemon 12.1MB |
| 18-Apr-2018 17:21:20 | |
| 18-Apr-2018 17:21:20 | Step 1/11 : FROM clowder/pyclowder:1 |
| 18-Apr-2018 17:21:20 | ---> d1a9e970ed30 |
| 18-Apr-2018 17:21:20 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 18-Apr-2018 17:21:20 | ---> Using cache |
| 18-Apr-2018 17:21:20 | ---> 46bf81116550 |
| 18-Apr-2018 17:21:20 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" |
| 18-Apr-2018 17:21:21 | ---> Running in fa465fe994cc |
| 18-Apr-2018 17:21:21 | Removing intermediate container fa465fe994cc |
| 18-Apr-2018 17:21:21 | ---> 1604a36dc849 |
| 18-Apr-2018 17:21:21 | Step 4/11 : USER root |
| 18-Apr-2018 17:21:21 | ---> Running in e5bf9affb08c |
| 18-Apr-2018 17:21:22 | Removing intermediate container e5bf9affb08c |
| 18-Apr-2018 17:21:22 | ---> c40e6365dcbe |
| 18-Apr-2018 17:21:22 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 18-Apr-2018 17:21:22 | ---> 7fc75f453906 |
| 18-Apr-2018 17:21:22 | Step 6/11 : RUN pip install --upgrade pip |
| 18-Apr-2018 17:21:23 | ---> Running in d77eb3868fa8 |
| 18-Apr-2018 17:21:24 | Collecting pip |
| 18-Apr-2018 17:21:24 | Downloading https://files.pythonhosted.org/packages/62/a1/0d452b6901b0157a0134fd27ba89bf95a857fbda64ba52e1ca2cf61d8412/pip-10.0.0-py2.py3-none-any.whl (1.3MB) |
| 18-Apr-2018 17:21:25 | Installing collected packages: pip |
| 18-Apr-2018 17:21:25 | Found existing installation: pip 8.1.1 |
| 18-Apr-2018 17:21:25 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 18-Apr-2018 17:21:25 | Successfully installed pip-10.0.0 |
| 18-Apr-2018 17:21:27 | Removing intermediate container d77eb3868fa8 |
| 18-Apr-2018 17:21:27 | ---> 8df4a7ffb6fb |
| 18-Apr-2018 17:21:27 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 18-Apr-2018 17:21:27 | ---> Running in a02673f2ea2f |
| 18-Apr-2018 17:21:28 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 18-Apr-2018 17:21:28 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 18-Apr-2018 17:21:28 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 18-Apr-2018 17:21:28 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 18-Apr-2018 17:21:28 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 18-Apr-2018 17:21:29 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 18-Apr-2018 17:21:29 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 18-Apr-2018 17:21:30 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 18-Apr-2018 17:21:30 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 18-Apr-2018 17:21:30 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 18-Apr-2018 17:21:30 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 18-Apr-2018 17:21:30 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 18-Apr-2018 17:21:30 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 18-Apr-2018 17:21:31 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 18-Apr-2018 17:21:31 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 18-Apr-2018 17:21:31 | Running setup.py install for openpyxl: started |
| 18-Apr-2018 17:21:31 | Running setup.py install for openpyxl: finished with status 'done' |
| 18-Apr-2018 17:21:31 | Found existing installation: pika 0.11.0 |
| 18-Apr-2018 17:21:31 | Uninstalling pika-0.11.0: |
| 18-Apr-2018 17:21:34 | Successfully uninstalled pika-0.11.0 |
| 18-Apr-2018 17:21:34 | Running setup.py install for pika: started |
| 18-Apr-2018 17:21:34 | Running setup.py install for pika: finished with status 'done' |
| 18-Apr-2018 17:21:34 | Running setup.py install for pymongo: started |
| 18-Apr-2018 17:21:35 | Running setup.py install for pymongo: finished with status 'done' |
| 18-Apr-2018 17:21:35 | Running setup.py install for pytz: started |
| 18-Apr-2018 17:21:35 | Running setup.py install for pytz: finished with status 'done' |
| 18-Apr-2018 17:21:35 | Found existing installation: requests 2.18.4 |
| 18-Apr-2018 17:21:35 | Uninstalling requests-2.18.4: |
| 18-Apr-2018 17:21:37 | Successfully uninstalled requests-2.18.4 |
| 18-Apr-2018 17:21:38 | Running setup.py install for xlrd: started |
| 18-Apr-2018 17:21:38 | Running setup.py install for xlrd: finished with status 'done' |
| 18-Apr-2018 17:21:38 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 18-Apr-2018 17:21:40 | Removing intermediate container a02673f2ea2f |
| 18-Apr-2018 17:21:40 | ---> fd74ef1aceda |
| 18-Apr-2018 17:21:40 | Step 8/11 : USER clowder |
| 18-Apr-2018 17:21:40 | ---> Running in ad21a5e42884 |
| 18-Apr-2018 17:21:40 | Removing intermediate container ad21a5e42884 |
| 18-Apr-2018 17:21:40 | ---> 630208e60695 |
| 18-Apr-2018 17:21:40 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 18-Apr-2018 17:21:42 | ---> 8c7d7ad853eb |
| 18-Apr-2018 17:21:42 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 18-Apr-2018 17:21:42 | ---> Running in 8e2e188a5eb1 |
| 18-Apr-2018 17:21:43 | Removing intermediate container 8e2e188a5eb1 |
| 18-Apr-2018 17:21:43 | ---> e585421734f6 |
| 18-Apr-2018 17:21:43 | Step 11/11 : CMD ["extractor"] |
| 18-Apr-2018 17:21:43 | ---> Running in d17526fe7b6e |
| 18-Apr-2018 17:21:44 | Removing intermediate container d17526fe7b6e |
| 18-Apr-2018 17:21:44 | ---> 225624e9556a |
| 18-Apr-2018 17:21:44 | Successfully built 225624e9556a |
| 18-Apr-2018 17:21:44 | Successfully tagged 17576:latest |
| 18-Apr-2018 17:21:44 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 18-Apr-2018 17:21:44 | 20baf33cf4e5: Preparing |
| 18-Apr-2018 17:21:44 | 67d3d610e020: Preparing |
| 18-Apr-2018 17:21:44 | b4d78dfb2d96: Preparing |
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| 18-Apr-2018 17:21:44 | a2022691bf95: Preparing |
| 18-Apr-2018 17:21:44 | f2297bdfc824: Waiting |
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| 18-Apr-2018 17:21:44 | a2022691bf95: Waiting |
| 18-Apr-2018 17:21:45 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:21:45 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:21:45 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:21:45 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:21:45 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:21:46 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:21:46 | 20baf33cf4e5: Pushed |
| 18-Apr-2018 17:21:46 | c56153825175: Layer already exists |
| 18-Apr-2018 17:21:46 | 764b1463235e: Pushed |
| 18-Apr-2018 17:21:46 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:21:46 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:21:47 | 67d3d610e020: Pushed |
| 18-Apr-2018 17:21:47 | b4d78dfb2d96: Pushed |
| 18-Apr-2018 17:21:50 | browndog_v0.2.0: digest: sha256:35428eac474992acdc01a32f6a860e0d5aa4cd9499174b5c6e3c9797a19a19cc size: 3031 |
| 18-Apr-2018 17:21:51 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 18-Apr-2018 17:21:51 | 20baf33cf4e5: Preparing |
| 18-Apr-2018 17:21:51 | 67d3d610e020: Preparing |
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| 18-Apr-2018 17:21:51 | a2022691bf95: Preparing |
| 18-Apr-2018 17:21:51 | f2297bdfc824: Waiting |
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| 18-Apr-2018 17:21:51 | c56153825175: Waiting |
| 18-Apr-2018 17:21:51 | b4d78dfb2d96: Layer already exists |
| 18-Apr-2018 17:21:51 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:21:51 | 20baf33cf4e5: Layer already exists |
| 18-Apr-2018 17:21:51 | 67d3d610e020: Layer already exists |
| 18-Apr-2018 17:21:51 | 764b1463235e: Layer already exists |
| 18-Apr-2018 17:21:51 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:21:51 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:21:51 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:21:51 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:21:51 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:21:51 | c56153825175: Layer already exists |
| 18-Apr-2018 17:21:51 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:21:51 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:21:52 | browndog_v0.3.0: digest: sha256:35428eac474992acdc01a32f6a860e0d5aa4cd9499174b5c6e3c9797a19a19cc size: 3031 |
| 18-Apr-2018 17:21:52 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 18-Apr-2018 17:21:52 | 20baf33cf4e5: Preparing |
| 18-Apr-2018 17:21:52 | 67d3d610e020: Preparing |
| 18-Apr-2018 17:21:52 | b4d78dfb2d96: Preparing |
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| 18-Apr-2018 17:21:52 | a2022691bf95: Preparing |
| 18-Apr-2018 17:21:52 | f96e6b25195f: Waiting |
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| 18-Apr-2018 17:21:52 | a2022691bf95: Waiting |
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| 18-Apr-2018 17:21:52 | 0fbe2bcb1bf9: Waiting |
| 18-Apr-2018 17:21:53 | 67d3d610e020: Layer already exists |
| 18-Apr-2018 17:21:53 | 764b1463235e: Layer already exists |
| 18-Apr-2018 17:21:53 | b4d78dfb2d96: Layer already exists |
| 18-Apr-2018 17:21:53 | 0cdb02ac1d86: Layer already exists |
| 18-Apr-2018 17:21:53 | 20baf33cf4e5: Layer already exists |
| 18-Apr-2018 17:21:53 | 0fbe2bcb1bf9: Layer already exists |
| 18-Apr-2018 17:21:53 | 59669fcdd5eb: Layer already exists |
| 18-Apr-2018 17:21:53 | f96e6b25195f: Layer already exists |
| 18-Apr-2018 17:21:53 | f2297bdfc824: Layer already exists |
| 18-Apr-2018 17:21:53 | 7f7a065d245a: Layer already exists |
| 18-Apr-2018 17:21:53 | ae620432889d: Layer already exists |
| 18-Apr-2018 17:21:53 | c56153825175: Layer already exists |
| 18-Apr-2018 17:21:53 | a2022691bf95: Layer already exists |
| 18-Apr-2018 17:21:54 | latest: digest: sha256:35428eac474992acdc01a32f6a860e0d5aa4cd9499174b5c6e3c9797a19a19cc size: 3031 |
| 18-Apr-2018 17:21:54 | Untagged: 17576:latest |
| 18-Apr-2018 17:21:54 | Finished task 'docker build' with result: Success |
| 18-Apr-2018 17:21:54 | Running post build plugin 'Docker Container Cleanup' |
| 18-Apr-2018 17:21:54 | Running post build plugin 'NCover Results Collector' |
| 18-Apr-2018 17:21:54 | Running post build plugin 'Clover Results Collector' |
| 18-Apr-2018 17:21:54 | Running post build plugin 'npm Cache Cleanup' |
| 18-Apr-2018 17:21:54 | Running post build plugin 'Artifact Copier' |
| 18-Apr-2018 17:21:54 | Finalising the build... |
| 18-Apr-2018 17:21:54 | Stopping timer. |
| 18-Apr-2018 17:21:54 | Build CATS-MSC-JOB1-35 completed. |
| 18-Apr-2018 17:21:54 | Running on server: post build plugin 'NCover Results Collector' |
| 18-Apr-2018 17:21:54 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 18-Apr-2018 17:21:54 | Running on server: post build plugin 'Clover Delta Calculator' |
| 18-Apr-2018 17:21:54 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 18-Apr-2018 17:21:54 | All post build plugins have finished |
| 18-Apr-2018 17:21:54 | Generating build results summary... |
| 18-Apr-2018 17:21:54 | Saving build results to disk... |
| 18-Apr-2018 17:21:54 | Logging substituted variables... |
| 18-Apr-2018 17:21:54 | Indexing build results... |
| 18-Apr-2018 17:21:54 | Finished building CATS-MSC-JOB1-35. |