Build: #37 was successful
Job: Default Job was successful
Build log
The build generated 1,058 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 09-Jul-2018 11:43:23 | libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 |
| 09-Jul-2018 11:43:23 | x11-common |
| 09-Jul-2018 11:43:23 | The following NEW packages will be installed: |
| 09-Jul-2018 11:43:23 | libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 |
| 09-Jul-2018 11:43:23 | libxext6 libxmu6 libxt6 wget x11-common |
| 09-Jul-2018 11:43:23 | 0 upgraded, 13 newly installed, 0 to remove and 47 not upgraded. |
| 09-Jul-2018 11:43:23 | Need to get 1402 kB of archives. |
| 09-Jul-2018 11:43:23 | After this operation, 5596 kB of additional disk space will be used. |
| 09-Jul-2018 11:43:23 | Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] |
| 09-Jul-2018 11:43:23 | Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] |
| 09-Jul-2018 11:43:23 | Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] |
| 09-Jul-2018 11:43:23 | Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] |
| 09-Jul-2018 11:43:23 | Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] |
| 09-Jul-2018 11:43:23 | Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] |
| 09-Jul-2018 11:43:23 | Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB] |
| 09-Jul-2018 11:43:23 | Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] |
| 09-Jul-2018 11:43:23 | Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] |
| 09-Jul-2018 11:43:23 | Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] |
| 09-Jul-2018 11:43:23 | Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.4 [299 kB] |
| 09-Jul-2018 11:43:23 | Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] |
| 09-Jul-2018 11:43:23 | Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] |
| 09-Jul-2018 11:43:24 | debconf: delaying package configuration, since apt-utils is not installed |
| 09-Jul-2018 11:43:24 | Fetched 1402 kB in 0s (1583 kB/s) |
| 09-Jul-2018 11:43:24 | Selecting previously unselected package libxau6:amd64. |
| 09-Jul-2018 11:43:24 | (Reading database ... |
| 09-Jul-2018 11:43:24 | (Reading database ... 5% |
| 09-Jul-2018 11:43:24 | (Reading database ... 10% |
| 09-Jul-2018 11:43:24 | (Reading database ... 15% |
| 09-Jul-2018 11:43:24 | (Reading database ... 20% |
| 09-Jul-2018 11:43:24 | (Reading database ... 25% |
| 09-Jul-2018 11:43:24 | (Reading database ... 30% |
| 09-Jul-2018 11:43:24 | (Reading database ... 35% |
| 09-Jul-2018 11:43:24 | (Reading database ... 40% |
| 09-Jul-2018 11:43:24 | (Reading database ... 45% |
| 09-Jul-2018 11:43:24 | (Reading database ... 50% |
| 09-Jul-2018 11:43:24 | (Reading database ... 55% |
| 09-Jul-2018 11:43:24 | (Reading database ... 60% |
| 09-Jul-2018 11:43:24 | (Reading database ... 65% |
| 09-Jul-2018 11:43:24 | (Reading database ... 70% |
| 09-Jul-2018 11:43:24 | (Reading database ... 75% |
| 09-Jul-2018 11:43:24 | (Reading database ... 80% |
| 09-Jul-2018 11:43:24 | (Reading database ... 85% |
| 09-Jul-2018 11:43:24 | (Reading database ... 90% |
| 09-Jul-2018 11:43:24 | (Reading database ... 95% |
| 09-Jul-2018 11:43:24 | (Reading database ... 100% |
| 09-Jul-2018 11:43:24 | (Reading database ... 6101 files and directories currently installed.) |
| 09-Jul-2018 11:43:24 | Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... |
| 09-Jul-2018 11:43:24 | Unpacking libxau6:amd64 (1:1.0.8-1) ... |
| 09-Jul-2018 11:43:25 | Selecting previously unselected package libxdmcp6:amd64. |
| 09-Jul-2018 11:43:25 | Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... |
| 09-Jul-2018 11:43:25 | Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 09-Jul-2018 11:43:26 | Selecting previously unselected package libxcb1:amd64. |
| 09-Jul-2018 11:43:26 | Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... |
| 09-Jul-2018 11:43:26 | Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 09-Jul-2018 11:43:26 | Selecting previously unselected package libx11-data. |
| 09-Jul-2018 11:43:26 | Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2_all.deb ... |
| 09-Jul-2018 11:43:26 | Unpacking libx11-data (2:1.6.3-1ubuntu2) ... |
| 09-Jul-2018 11:43:27 | Selecting previously unselected package libx11-6:amd64. |
| 09-Jul-2018 11:43:27 | Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2_amd64.deb ... |
| 09-Jul-2018 11:43:27 | Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2) ... |
| 09-Jul-2018 11:43:28 | Selecting previously unselected package libxext6:amd64. |
| 09-Jul-2018 11:43:28 | Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... |
| 09-Jul-2018 11:43:28 | Unpacking libxext6:amd64 (2:1.3.3-1) ... |
| 09-Jul-2018 11:43:28 | Selecting previously unselected package x11-common. |
| 09-Jul-2018 11:43:28 | Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3_all.deb ... |
| 09-Jul-2018 11:43:28 | Unpacking x11-common (1:7.7+13ubuntu3) ... |
| 09-Jul-2018 11:43:29 | Selecting previously unselected package libice6:amd64. |
| 09-Jul-2018 11:43:29 | Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... |
| 09-Jul-2018 11:43:29 | Unpacking libice6:amd64 (2:1.0.9-1) ... |
| 09-Jul-2018 11:43:30 | Selecting previously unselected package libsm6:amd64. |
| 09-Jul-2018 11:43:30 | Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... |
| 09-Jul-2018 11:43:30 | Unpacking libsm6:amd64 (2:1.2.2-1) ... |
| 09-Jul-2018 11:43:31 | Selecting previously unselected package libidn11:amd64. |
| 09-Jul-2018 11:43:31 | Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... |
| 09-Jul-2018 11:43:31 | Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 09-Jul-2018 11:43:31 | Selecting previously unselected package wget. |
| 09-Jul-2018 11:43:31 | Preparing to unpack .../wget_1.17.1-1ubuntu1.4_amd64.deb ... |
| 09-Jul-2018 11:43:31 | Unpacking wget (1.17.1-1ubuntu1.4) ... |
| 09-Jul-2018 11:43:32 | Selecting previously unselected package libxt6:amd64. |
| 09-Jul-2018 11:43:32 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 09-Jul-2018 11:43:32 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 09-Jul-2018 11:43:32 | Selecting previously unselected package libxmu6:amd64. |
| 09-Jul-2018 11:43:32 | Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... |
| 09-Jul-2018 11:43:32 | Unpacking libxmu6:amd64 (2:1.1.2-2) ... |
| 09-Jul-2018 11:43:32 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 09-Jul-2018 11:43:32 | Processing triggers for systemd (229-4ubuntu19) ... |
| 09-Jul-2018 11:43:32 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 09-Jul-2018 11:43:33 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 09-Jul-2018 11:43:33 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 09-Jul-2018 11:43:33 | Setting up libx11-data (2:1.6.3-1ubuntu2) ... |
| 09-Jul-2018 11:43:33 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ... |
| 09-Jul-2018 11:43:33 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 09-Jul-2018 11:43:33 | Setting up x11-common (1:7.7+13ubuntu3) ... |
| 09-Jul-2018 11:43:34 | debconf: unable to initialize frontend: Dialog |
| 09-Jul-2018 11:43:34 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 09-Jul-2018 11:43:34 | debconf: falling back to frontend: Readline |
| 09-Jul-2018 11:43:34 | debconf: unable to initialize frontend: Readline |
| 09-Jul-2018 11:43:34 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
| 09-Jul-2018 11:43:34 | debconf: falling back to frontend: Teletype |
| 09-Jul-2018 11:43:34 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 09-Jul-2018 11:43:34 | invoke-rc.d: could not determine current runlevel |
| 09-Jul-2018 11:43:34 | invoke-rc.d: policy-rc.d denied execution of start. |
| 09-Jul-2018 11:43:34 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 09-Jul-2018 11:43:35 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 09-Jul-2018 11:43:35 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 09-Jul-2018 11:43:36 | Setting up wget (1.17.1-1ubuntu1.4) ... |
| 09-Jul-2018 11:43:36 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 09-Jul-2018 11:43:36 | Setting up libxmu6:amd64 (2:1.1.2-2) ... |
| 09-Jul-2018 11:43:36 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 09-Jul-2018 11:43:36 | Processing triggers for systemd (229-4ubuntu19) ... |
| 09-Jul-2018 11:43:38 | Removing intermediate container a7eefa1e7065 |
| 09-Jul-2018 11:43:38 | ---> 96500098e343 |
| 09-Jul-2018 11:43:38 | Step 8/11 : USER clowder |
| 09-Jul-2018 11:43:38 | ---> Running in 872f0621b96b |
| 09-Jul-2018 11:43:38 | Removing intermediate container 872f0621b96b |
| 09-Jul-2018 11:43:38 | ---> 174b70fb70da |
| 09-Jul-2018 11:43:38 | Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ |
| 09-Jul-2018 11:43:40 | ---> e437a5847323 |
| 09-Jul-2018 11:43:40 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 09-Jul-2018 11:43:40 | ---> Running in 1a0557b3e283 |
| 09-Jul-2018 11:43:41 | Removing intermediate container 1a0557b3e283 |
| 09-Jul-2018 11:43:41 | ---> 887aa57dac4d |
| 09-Jul-2018 11:43:41 | Step 11/11 : CMD ["extractor"] |
| 09-Jul-2018 11:43:41 | ---> Running in 928695f15106 |
| 09-Jul-2018 11:43:42 | Removing intermediate container 928695f15106 |
| 09-Jul-2018 11:43:42 | ---> 4041a19bbfca |
| 09-Jul-2018 11:43:42 | Successfully built 4041a19bbfca |
| 09-Jul-2018 11:43:42 | Successfully tagged 19346:latest |
| 09-Jul-2018 11:43:42 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 09-Jul-2018 11:43:42 | a8e04bcb872c: Preparing |
| 09-Jul-2018 11:43:42 | b23425a35cf3: Preparing |
| 09-Jul-2018 11:43:42 | 0b7b78c692b4: Preparing |
| 09-Jul-2018 11:43:42 | 0cdb02ac1d86: Preparing |
| 09-Jul-2018 11:43:42 | f2297bdfc824: Preparing |
| 09-Jul-2018 11:43:42 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:43:42 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:43:42 | 7f7a065d245a: Preparing |
| 09-Jul-2018 11:43:42 | f96e6b25195f: Preparing |
| 09-Jul-2018 11:43:42 | c56153825175: Preparing |
| 09-Jul-2018 11:43:42 | ae620432889d: Preparing |
| 09-Jul-2018 11:43:42 | a2022691bf95: Preparing |
| 09-Jul-2018 11:43:42 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:43:42 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:43:42 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:43:42 | c56153825175: Waiting |
| 09-Jul-2018 11:43:42 | ae620432889d: Waiting |
| 09-Jul-2018 11:43:42 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:43:42 | a2022691bf95: Waiting |
| 09-Jul-2018 11:43:42 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:43:42 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:43:42 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:43:43 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:43:43 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:43:43 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:43:43 | c56153825175: Layer already exists |
| 09-Jul-2018 11:43:43 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:43:43 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:43:44 | a8e04bcb872c: Pushed |
| 09-Jul-2018 11:43:45 | 0b7b78c692b4: Pushed |
| 09-Jul-2018 11:43:45 | b23425a35cf3: Pushed |
| 09-Jul-2018 11:43:47 | browndog_v0.2.0: digest: sha256:bd73a8e0bc108c95d4e648bda2176b5a0bbe1e5f95ee31eab634d17d31aacce6 size: 2826 |
| 09-Jul-2018 11:43:47 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 09-Jul-2018 11:43:47 | a8e04bcb872c: Preparing |
| 09-Jul-2018 11:43:47 | b23425a35cf3: Preparing |
| 09-Jul-2018 11:43:47 | 0b7b78c692b4: Preparing |
| 09-Jul-2018 11:43:47 | 0cdb02ac1d86: Preparing |
| 09-Jul-2018 11:43:47 | f2297bdfc824: Preparing |
| 09-Jul-2018 11:43:47 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:43:47 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:43:47 | 7f7a065d245a: Preparing |
| 09-Jul-2018 11:43:47 | f96e6b25195f: Preparing |
| 09-Jul-2018 11:43:47 | c56153825175: Preparing |
| 09-Jul-2018 11:43:47 | ae620432889d: Preparing |
| 09-Jul-2018 11:43:47 | a2022691bf95: Preparing |
| 09-Jul-2018 11:43:47 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:43:47 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:43:47 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:43:47 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:43:47 | c56153825175: Waiting |
| 09-Jul-2018 11:43:47 | ae620432889d: Waiting |
| 09-Jul-2018 11:43:47 | a2022691bf95: Waiting |
| 09-Jul-2018 11:43:48 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:43:48 | 0b7b78c692b4: Layer already exists |
| 09-Jul-2018 11:43:48 | b23425a35cf3: Layer already exists |
| 09-Jul-2018 11:43:48 | a8e04bcb872c: Layer already exists |
| 09-Jul-2018 11:43:48 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:43:48 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:43:48 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:43:48 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:43:48 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:43:48 | c56153825175: Layer already exists |
| 09-Jul-2018 11:43:48 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:43:48 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:43:49 | browndog_v0.3.0: digest: sha256:bd73a8e0bc108c95d4e648bda2176b5a0bbe1e5f95ee31eab634d17d31aacce6 size: 2826 |
| 09-Jul-2018 11:43:49 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 09-Jul-2018 11:43:49 | a8e04bcb872c: Preparing |
| 09-Jul-2018 11:43:49 | b23425a35cf3: Preparing |
| 09-Jul-2018 11:43:49 | 0b7b78c692b4: Preparing |
| 09-Jul-2018 11:43:49 | 0cdb02ac1d86: Preparing |
| 09-Jul-2018 11:43:49 | f2297bdfc824: Preparing |
| 09-Jul-2018 11:43:49 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:43:49 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:43:49 | 7f7a065d245a: Preparing |
| 09-Jul-2018 11:43:49 | f96e6b25195f: Preparing |
| 09-Jul-2018 11:43:49 | c56153825175: Preparing |
| 09-Jul-2018 11:43:49 | ae620432889d: Preparing |
| 09-Jul-2018 11:43:49 | a2022691bf95: Preparing |
| 09-Jul-2018 11:43:49 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:43:49 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:43:49 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:43:49 | c56153825175: Waiting |
| 09-Jul-2018 11:43:49 | ae620432889d: Waiting |
| 09-Jul-2018 11:43:49 | a2022691bf95: Waiting |
| 09-Jul-2018 11:43:49 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:43:49 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:43:49 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:43:49 | a8e04bcb872c: Layer already exists |
| 09-Jul-2018 11:43:49 | b23425a35cf3: Layer already exists |
| 09-Jul-2018 11:43:49 | 0b7b78c692b4: Layer already exists |
| 09-Jul-2018 11:43:49 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:43:50 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:43:50 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:43:50 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:43:50 | c56153825175: Layer already exists |
| 09-Jul-2018 11:43:50 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:43:50 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:43:50 | latest: digest: sha256:bd73a8e0bc108c95d4e648bda2176b5a0bbe1e5f95ee31eab634d17d31aacce6 size: 2826 |
| 09-Jul-2018 11:43:50 | Untagged: 19346:latest |
| 09-Jul-2018 11:43:50 | Sending build context to Docker daemon 67.07kB |
| 09-Jul-2018 11:43:50 | |
| 09-Jul-2018 11:43:50 | Step 1/11 : FROM clowder/pyclowder:1 |
| 09-Jul-2018 11:43:50 | ---> d1a9e970ed30 |
| 09-Jul-2018 11:43:50 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 09-Jul-2018 11:43:51 | ---> Running in 73eb1f02cbc1 |
| 09-Jul-2018 11:43:51 | Removing intermediate container 73eb1f02cbc1 |
| 09-Jul-2018 11:43:51 | ---> ccdf0a6fab71 |
| 09-Jul-2018 11:43:51 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" |
| 09-Jul-2018 11:43:51 | ---> Running in 156b26913310 |
| 09-Jul-2018 11:43:52 | Removing intermediate container 156b26913310 |
| 09-Jul-2018 11:43:52 | ---> 3ff9a06954fe |
| 09-Jul-2018 11:43:52 | Step 4/11 : USER root |
| 09-Jul-2018 11:43:52 | ---> Running in fb9f5b5a2153 |
| 09-Jul-2018 11:43:52 | Removing intermediate container fb9f5b5a2153 |
| 09-Jul-2018 11:43:52 | ---> 3247df2795a6 |
| 09-Jul-2018 11:43:52 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 09-Jul-2018 11:43:53 | ---> 75e43013cf24 |
| 09-Jul-2018 11:43:53 | Step 6/11 : RUN pip install --upgrade pip |
| 09-Jul-2018 11:43:53 | ---> Running in 4b6980a34495 |
| 09-Jul-2018 11:43:54 | Collecting pip |
| 09-Jul-2018 11:43:54 | Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) |
| 09-Jul-2018 11:43:55 | Installing collected packages: pip |
| 09-Jul-2018 11:43:55 | Found existing installation: pip 8.1.1 |
| 09-Jul-2018 11:43:55 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 09-Jul-2018 11:43:55 | Successfully installed pip-10.0.1 |
| 09-Jul-2018 11:43:57 | Removing intermediate container 4b6980a34495 |
| 09-Jul-2018 11:43:57 | ---> 5e8e941701f6 |
| 09-Jul-2018 11:43:57 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 09-Jul-2018 11:43:57 | ---> Running in 8a291c952c6f |
| 09-Jul-2018 11:43:58 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 09-Jul-2018 11:43:58 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 09-Jul-2018 11:43:58 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 09-Jul-2018 11:43:59 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 09-Jul-2018 11:43:59 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 09-Jul-2018 11:43:59 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 09-Jul-2018 11:43:59 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 09-Jul-2018 11:44:00 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 09-Jul-2018 11:44:00 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 09-Jul-2018 11:44:00 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 09-Jul-2018 11:44:01 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 09-Jul-2018 11:44:01 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 09-Jul-2018 11:44:01 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 09-Jul-2018 11:44:01 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 09-Jul-2018 11:44:01 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 09-Jul-2018 11:44:01 | Running setup.py install for openpyxl: started |
| 09-Jul-2018 11:44:01 | Running setup.py install for openpyxl: finished with status 'done' |
| 09-Jul-2018 11:44:01 | Found existing installation: pika 0.11.0 |
| 09-Jul-2018 11:44:01 | Uninstalling pika-0.11.0: |
| 09-Jul-2018 11:44:04 | Successfully uninstalled pika-0.11.0 |
| 09-Jul-2018 11:44:04 | Running setup.py install for pika: started |
| 09-Jul-2018 11:44:04 | Running setup.py install for pika: finished with status 'done' |
| 09-Jul-2018 11:44:04 | Running setup.py install for pymongo: started |
| 09-Jul-2018 11:44:04 | Running setup.py install for pymongo: finished with status 'done' |
| 09-Jul-2018 11:44:04 | Running setup.py install for pytz: started |
| 09-Jul-2018 11:44:05 | Running setup.py install for pytz: finished with status 'done' |
| 09-Jul-2018 11:44:05 | Found existing installation: requests 2.18.4 |
| 09-Jul-2018 11:44:05 | Uninstalling requests-2.18.4: |
| 09-Jul-2018 11:44:08 | Successfully uninstalled requests-2.18.4 |
| 09-Jul-2018 11:44:08 | Running setup.py install for xlrd: started |
| 09-Jul-2018 11:44:09 | Running setup.py install for xlrd: finished with status 'done' |
| 09-Jul-2018 11:44:09 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 09-Jul-2018 11:44:10 | Removing intermediate container 8a291c952c6f |
| 09-Jul-2018 11:44:10 | ---> c529cce602ac |
| 09-Jul-2018 11:44:10 | Step 8/11 : USER clowder |
| 09-Jul-2018 11:44:10 | ---> Running in 1c4927bcdff0 |
| 09-Jul-2018 11:44:11 | Removing intermediate container 1c4927bcdff0 |
| 09-Jul-2018 11:44:11 | ---> f23e016a70b4 |
| 09-Jul-2018 11:44:11 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 09-Jul-2018 11:44:12 | ---> c0f5055bd47f |
| 09-Jul-2018 11:44:12 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 09-Jul-2018 11:44:12 | ---> Running in 7de350a1d7f7 |
| 09-Jul-2018 11:44:13 | Removing intermediate container 7de350a1d7f7 |
| 09-Jul-2018 11:44:13 | ---> 728e5656e83c |
| 09-Jul-2018 11:44:13 | Step 11/11 : CMD ["extractor"] |
| 09-Jul-2018 11:44:13 | ---> Running in 788ed15b5397 |
| 09-Jul-2018 11:44:14 | Removing intermediate container 788ed15b5397 |
| 09-Jul-2018 11:44:14 | ---> 310e91d921d1 |
| 09-Jul-2018 11:44:14 | Successfully built 310e91d921d1 |
| 09-Jul-2018 11:44:14 | Successfully tagged 19346:latest |
| 09-Jul-2018 11:44:14 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 09-Jul-2018 11:44:14 | bc4498ef1792: Preparing |
| 09-Jul-2018 11:44:14 | c82a5b8ba2f1: Preparing |
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| 09-Jul-2018 11:44:14 | f2297bdfc824: Waiting |
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| 09-Jul-2018 11:44:14 | ae620432889d: Waiting |
| 09-Jul-2018 11:44:14 | a2022691bf95: Waiting |
| 09-Jul-2018 11:44:14 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:44:15 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:44:15 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:44:15 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:44:15 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:44:15 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:44:16 | 14a5a4c81a6f: Pushed |
| 09-Jul-2018 11:44:16 | c56153825175: Layer already exists |
| 09-Jul-2018 11:44:16 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:44:16 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:44:16 | 09c2ebbeb78e: Pushed |
| 09-Jul-2018 11:44:17 | bc4498ef1792: Pushed |
| 09-Jul-2018 11:44:17 | c82a5b8ba2f1: Pushed |
| 09-Jul-2018 11:44:19 | browndog_v0.2.0: digest: sha256:69221eddd0c6ec28c81fe0d1eecf839b8f41f513f6cd4516a165b3920dc02226 size: 3031 |
| 09-Jul-2018 11:44:20 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 09-Jul-2018 11:44:20 | bc4498ef1792: Preparing |
| 09-Jul-2018 11:44:20 | c82a5b8ba2f1: Preparing |
| 09-Jul-2018 11:44:20 | 09c2ebbeb78e: Preparing |
| 09-Jul-2018 11:44:20 | 14a5a4c81a6f: Preparing |
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| 09-Jul-2018 11:44:20 | 7f7a065d245a: Preparing |
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| 09-Jul-2018 11:44:20 | c56153825175: Preparing |
| 09-Jul-2018 11:44:20 | ae620432889d: Preparing |
| 09-Jul-2018 11:44:20 | a2022691bf95: Preparing |
| 09-Jul-2018 11:44:20 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:44:20 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:44:20 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:44:20 | c56153825175: Waiting |
| 09-Jul-2018 11:44:20 | ae620432889d: Waiting |
| 09-Jul-2018 11:44:20 | a2022691bf95: Waiting |
| 09-Jul-2018 11:44:20 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:44:20 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:44:20 | c82a5b8ba2f1: Layer already exists |
| 09-Jul-2018 11:44:20 | 09c2ebbeb78e: Layer already exists |
| 09-Jul-2018 11:44:20 | 14a5a4c81a6f: Layer already exists |
| 09-Jul-2018 11:44:20 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:44:20 | bc4498ef1792: Layer already exists |
| 09-Jul-2018 11:44:20 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:44:20 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:44:20 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:44:20 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:44:20 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:44:20 | c56153825175: Layer already exists |
| 09-Jul-2018 11:44:20 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:44:20 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:44:21 | browndog_v0.3.0: digest: sha256:69221eddd0c6ec28c81fe0d1eecf839b8f41f513f6cd4516a165b3920dc02226 size: 3031 |
| 09-Jul-2018 11:44:21 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 09-Jul-2018 11:44:21 | bc4498ef1792: Preparing |
| 09-Jul-2018 11:44:21 | c82a5b8ba2f1: Preparing |
| 09-Jul-2018 11:44:21 | 09c2ebbeb78e: Preparing |
| 09-Jul-2018 11:44:21 | 14a5a4c81a6f: Preparing |
| 09-Jul-2018 11:44:21 | 0cdb02ac1d86: Preparing |
| 09-Jul-2018 11:44:21 | f2297bdfc824: Preparing |
| 09-Jul-2018 11:44:21 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:44:21 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:44:21 | 7f7a065d245a: Preparing |
| 09-Jul-2018 11:44:21 | f96e6b25195f: Preparing |
| 09-Jul-2018 11:44:21 | c56153825175: Preparing |
| 09-Jul-2018 11:44:21 | ae620432889d: Preparing |
| 09-Jul-2018 11:44:21 | a2022691bf95: Preparing |
| 09-Jul-2018 11:44:21 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:44:21 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:44:21 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:44:21 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:44:21 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:44:21 | c56153825175: Waiting |
| 09-Jul-2018 11:44:21 | ae620432889d: Waiting |
| 09-Jul-2018 11:44:21 | a2022691bf95: Waiting |
| 09-Jul-2018 11:44:21 | 14a5a4c81a6f: Layer already exists |
| 09-Jul-2018 11:44:21 | bc4498ef1792: Layer already exists |
| 09-Jul-2018 11:44:21 | 09c2ebbeb78e: Layer already exists |
| 09-Jul-2018 11:44:22 | c82a5b8ba2f1: Layer already exists |
| 09-Jul-2018 11:44:22 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:44:22 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:44:22 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:44:22 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:44:22 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:44:22 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:44:22 | c56153825175: Layer already exists |
| 09-Jul-2018 11:44:22 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:44:22 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:44:22 | latest: digest: sha256:69221eddd0c6ec28c81fe0d1eecf839b8f41f513f6cd4516a165b3920dc02226 size: 3031 |
| 09-Jul-2018 11:44:22 | Untagged: 19346:latest |
| 09-Jul-2018 11:44:22 | Sending build context to Docker daemon 66.05kB |
| 09-Jul-2018 11:44:22 | |
| 09-Jul-2018 11:44:23 | Step 1/11 : FROM clowder/pyclowder:1 |
| 09-Jul-2018 11:44:23 | ---> d1a9e970ed30 |
| 09-Jul-2018 11:44:23 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 09-Jul-2018 11:44:23 | ---> Using cache |
| 09-Jul-2018 11:44:23 | ---> ccdf0a6fab71 |
| 09-Jul-2018 11:44:23 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" |
| 09-Jul-2018 11:44:23 | ---> Running in b00e6ba41b6d |
| 09-Jul-2018 11:44:23 | Removing intermediate container b00e6ba41b6d |
| 09-Jul-2018 11:44:23 | ---> 1cfb4fccc586 |
| 09-Jul-2018 11:44:23 | Step 4/11 : USER root |
| 09-Jul-2018 11:44:24 | ---> Running in 429aa53ec6a6 |
| 09-Jul-2018 11:44:24 | Removing intermediate container 429aa53ec6a6 |
| 09-Jul-2018 11:44:24 | ---> 6d0225e106b5 |
| 09-Jul-2018 11:44:24 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 09-Jul-2018 11:44:25 | ---> 24052423dabe |
| 09-Jul-2018 11:44:25 | Step 6/11 : RUN pip install --upgrade pip |
| 09-Jul-2018 11:44:26 | ---> Running in bd6d4cfb4df6 |
| 09-Jul-2018 11:44:28 | Collecting pip |
| 09-Jul-2018 11:44:28 | Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) |
| 09-Jul-2018 11:44:28 | Installing collected packages: pip |
| 09-Jul-2018 11:44:28 | Found existing installation: pip 8.1.1 |
| 09-Jul-2018 11:44:28 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 09-Jul-2018 11:44:29 | Successfully installed pip-10.0.1 |
| 09-Jul-2018 11:44:31 | Removing intermediate container bd6d4cfb4df6 |
| 09-Jul-2018 11:44:31 | ---> 926074894991 |
| 09-Jul-2018 11:44:31 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 09-Jul-2018 11:44:31 | ---> Running in c09d72100142 |
| 09-Jul-2018 11:44:32 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 09-Jul-2018 11:44:32 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 09-Jul-2018 11:44:32 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 09-Jul-2018 11:44:33 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 09-Jul-2018 11:44:33 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 09-Jul-2018 11:44:33 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 09-Jul-2018 11:44:34 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 09-Jul-2018 11:44:34 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 09-Jul-2018 11:44:34 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 09-Jul-2018 11:44:35 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 09-Jul-2018 11:44:35 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 09-Jul-2018 11:44:35 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 09-Jul-2018 11:44:35 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 09-Jul-2018 11:44:35 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 09-Jul-2018 11:44:35 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 09-Jul-2018 11:44:35 | Running setup.py install for openpyxl: started |
| 09-Jul-2018 11:44:36 | Running setup.py install for openpyxl: finished with status 'done' |
| 09-Jul-2018 11:44:36 | Found existing installation: pika 0.11.0 |
| 09-Jul-2018 11:44:36 | Uninstalling pika-0.11.0: |
| 09-Jul-2018 11:44:38 | Successfully uninstalled pika-0.11.0 |
| 09-Jul-2018 11:44:38 | Running setup.py install for pika: started |
| 09-Jul-2018 11:44:39 | Running setup.py install for pika: finished with status 'done' |
| 09-Jul-2018 11:44:39 | Running setup.py install for pymongo: started |
| 09-Jul-2018 11:44:39 | Running setup.py install for pymongo: finished with status 'done' |
| 09-Jul-2018 11:44:39 | Running setup.py install for pytz: started |
| 09-Jul-2018 11:44:39 | Running setup.py install for pytz: finished with status 'done' |
| 09-Jul-2018 11:44:39 | Found existing installation: requests 2.18.4 |
| 09-Jul-2018 11:44:39 | Uninstalling requests-2.18.4: |
| 09-Jul-2018 11:44:43 | Successfully uninstalled requests-2.18.4 |
| 09-Jul-2018 11:44:43 | Running setup.py install for xlrd: started |
| 09-Jul-2018 11:44:43 | Running setup.py install for xlrd: finished with status 'done' |
| 09-Jul-2018 11:44:43 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 09-Jul-2018 11:44:45 | Removing intermediate container c09d72100142 |
| 09-Jul-2018 11:44:45 | ---> c2ad0ae8bf05 |
| 09-Jul-2018 11:44:45 | Step 8/11 : USER clowder |
| 09-Jul-2018 11:44:45 | ---> Running in edaa8d3bba8e |
| 09-Jul-2018 11:44:46 | Removing intermediate container edaa8d3bba8e |
| 09-Jul-2018 11:44:46 | ---> 4ad833c7560d |
| 09-Jul-2018 11:44:46 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 09-Jul-2018 11:44:47 | ---> a633a5b844f9 |
| 09-Jul-2018 11:44:47 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 09-Jul-2018 11:44:47 | ---> Running in 0577b6e33b0b |
| 09-Jul-2018 11:44:47 | Removing intermediate container 0577b6e33b0b |
| 09-Jul-2018 11:44:47 | ---> 52b61bfc7a38 |
| 09-Jul-2018 11:44:47 | Step 11/11 : CMD ["extractor"] |
| 09-Jul-2018 11:44:48 | ---> Running in ed2501471227 |
| 09-Jul-2018 11:44:48 | Removing intermediate container ed2501471227 |
| 09-Jul-2018 11:44:48 | ---> 29db2ee255be |
| 09-Jul-2018 11:44:48 | Successfully built 29db2ee255be |
| 09-Jul-2018 11:44:48 | Successfully tagged 19346:latest |
| 09-Jul-2018 11:44:48 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 09-Jul-2018 11:44:48 | 75b56e63c0cd: Preparing |
| 09-Jul-2018 11:44:48 | b259f232cd2f: Preparing |
| 09-Jul-2018 11:44:48 | 4bec2fd74c2d: Preparing |
| 09-Jul-2018 11:44:48 | a3df3c1c9126: Preparing |
| 09-Jul-2018 11:44:48 | 0cdb02ac1d86: Preparing |
| 09-Jul-2018 11:44:48 | f2297bdfc824: Preparing |
| 09-Jul-2018 11:44:48 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:44:48 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:44:48 | 7f7a065d245a: Preparing |
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| 09-Jul-2018 11:44:48 | a2022691bf95: Preparing |
| 09-Jul-2018 11:44:48 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:44:48 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:44:48 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:44:48 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:44:48 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:44:48 | c56153825175: Waiting |
| 09-Jul-2018 11:44:48 | ae620432889d: Waiting |
| 09-Jul-2018 11:44:48 | a2022691bf95: Waiting |
| 09-Jul-2018 11:44:49 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:44:49 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:44:49 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:44:49 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:44:50 | a3df3c1c9126: Pushed |
| 09-Jul-2018 11:44:50 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:44:50 | c56153825175: Layer already exists |
| 09-Jul-2018 11:44:50 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:44:50 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:44:50 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:44:51 | 4bec2fd74c2d: Pushed |
| 09-Jul-2018 11:44:51 | 75b56e63c0cd: Pushed |
| 09-Jul-2018 11:44:51 | b259f232cd2f: Pushed |
| 09-Jul-2018 11:44:54 | browndog_v0.2.0: digest: sha256:06cb9403340bf244bc752c89f3e0fd879709e32da8405b839f0e14461dcdff63 size: 3031 |
| 09-Jul-2018 11:44:54 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 09-Jul-2018 11:44:54 | 75b56e63c0cd: Preparing |
| 09-Jul-2018 11:44:54 | b259f232cd2f: Preparing |
| 09-Jul-2018 11:44:54 | 4bec2fd74c2d: Preparing |
| 09-Jul-2018 11:44:54 | a3df3c1c9126: Preparing |
| 09-Jul-2018 11:44:54 | 0cdb02ac1d86: Preparing |
| 09-Jul-2018 11:44:54 | f2297bdfc824: Preparing |
| 09-Jul-2018 11:44:54 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:44:54 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:44:54 | 7f7a065d245a: Preparing |
| 09-Jul-2018 11:44:54 | f96e6b25195f: Preparing |
| 09-Jul-2018 11:44:54 | c56153825175: Preparing |
| 09-Jul-2018 11:44:54 | ae620432889d: Preparing |
| 09-Jul-2018 11:44:54 | a2022691bf95: Preparing |
| 09-Jul-2018 11:44:54 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:44:54 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:44:54 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:44:54 | c56153825175: Waiting |
| 09-Jul-2018 11:44:54 | ae620432889d: Waiting |
| 09-Jul-2018 11:44:54 | a2022691bf95: Waiting |
| 09-Jul-2018 11:44:54 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:44:54 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:44:54 | 75b56e63c0cd: Layer already exists |
| 09-Jul-2018 11:44:54 | a3df3c1c9126: Layer already exists |
| 09-Jul-2018 11:44:54 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:44:54 | b259f232cd2f: Layer already exists |
| 09-Jul-2018 11:44:54 | 4bec2fd74c2d: Layer already exists |
| 09-Jul-2018 11:44:55 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:44:55 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:44:55 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:44:55 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:44:55 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:44:55 | c56153825175: Layer already exists |
| 09-Jul-2018 11:44:55 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:44:55 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:44:55 | browndog_v0.3.0: digest: sha256:06cb9403340bf244bc752c89f3e0fd879709e32da8405b839f0e14461dcdff63 size: 3031 |
| 09-Jul-2018 11:44:55 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 09-Jul-2018 11:44:55 | 75b56e63c0cd: Preparing |
| 09-Jul-2018 11:44:55 | b259f232cd2f: Preparing |
| 09-Jul-2018 11:44:55 | 4bec2fd74c2d: Preparing |
| 09-Jul-2018 11:44:55 | a3df3c1c9126: Preparing |
| 09-Jul-2018 11:44:55 | 0cdb02ac1d86: Preparing |
| 09-Jul-2018 11:44:55 | f2297bdfc824: Preparing |
| 09-Jul-2018 11:44:55 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:44:55 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:44:55 | 7f7a065d245a: Preparing |
| 09-Jul-2018 11:44:55 | f96e6b25195f: Preparing |
| 09-Jul-2018 11:44:55 | c56153825175: Preparing |
| 09-Jul-2018 11:44:55 | ae620432889d: Preparing |
| 09-Jul-2018 11:44:55 | a2022691bf95: Preparing |
| 09-Jul-2018 11:44:55 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:44:55 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:44:55 | c56153825175: Waiting |
| 09-Jul-2018 11:44:55 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:44:55 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:44:55 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:44:55 | ae620432889d: Waiting |
| 09-Jul-2018 11:44:55 | a2022691bf95: Waiting |
| 09-Jul-2018 11:44:56 | b259f232cd2f: Layer already exists |
| 09-Jul-2018 11:44:56 | a3df3c1c9126: Layer already exists |
| 09-Jul-2018 11:44:56 | 75b56e63c0cd: Layer already exists |
| 09-Jul-2018 11:44:56 | 4bec2fd74c2d: Layer already exists |
| 09-Jul-2018 11:44:56 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:44:56 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:44:56 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:44:56 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:44:56 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:44:56 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:44:56 | c56153825175: Layer already exists |
| 09-Jul-2018 11:44:56 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:44:56 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:44:56 | latest: digest: sha256:06cb9403340bf244bc752c89f3e0fd879709e32da8405b839f0e14461dcdff63 size: 3031 |
| 09-Jul-2018 11:44:57 | Untagged: 19346:latest |
| 09-Jul-2018 11:44:57 | Sending build context to Docker daemon 198.1kB |
| 09-Jul-2018 11:44:57 | |
| 09-Jul-2018 11:44:57 | Step 1/11 : FROM clowder/pyclowder:1 |
| 09-Jul-2018 11:44:57 | ---> d1a9e970ed30 |
| 09-Jul-2018 11:44:57 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 09-Jul-2018 11:44:57 | ---> Using cache |
| 09-Jul-2018 11:44:57 | ---> ccdf0a6fab71 |
| 09-Jul-2018 11:44:57 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" |
| 09-Jul-2018 11:44:57 | ---> Running in 9181307c392b |
| 09-Jul-2018 11:44:57 | Removing intermediate container 9181307c392b |
| 09-Jul-2018 11:44:57 | ---> fc4668749e19 |
| 09-Jul-2018 11:44:57 | Step 4/11 : USER root |
| 09-Jul-2018 11:44:57 | ---> Running in b1354241e093 |
| 09-Jul-2018 11:44:58 | Removing intermediate container b1354241e093 |
| 09-Jul-2018 11:44:58 | ---> 251ff968fcc5 |
| 09-Jul-2018 11:44:58 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 09-Jul-2018 11:44:58 | ---> 33c4364e257c |
| 09-Jul-2018 11:44:58 | Step 6/11 : RUN pip install --upgrade pip |
| 09-Jul-2018 11:44:59 | ---> Running in 59faf23c8563 |
| 09-Jul-2018 11:45:00 | Collecting pip |
| 09-Jul-2018 11:45:00 | Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) |
| 09-Jul-2018 11:45:00 | Installing collected packages: pip |
| 09-Jul-2018 11:45:00 | Found existing installation: pip 8.1.1 |
| 09-Jul-2018 11:45:00 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 09-Jul-2018 11:45:01 | Successfully installed pip-10.0.1 |
| 09-Jul-2018 11:45:02 | Removing intermediate container 59faf23c8563 |
| 09-Jul-2018 11:45:02 | ---> 98181b1188a0 |
| 09-Jul-2018 11:45:02 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 09-Jul-2018 11:45:03 | ---> Running in e43beeb371bc |
| 09-Jul-2018 11:45:03 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 09-Jul-2018 11:45:03 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 09-Jul-2018 11:45:03 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 09-Jul-2018 11:45:04 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 09-Jul-2018 11:45:04 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 09-Jul-2018 11:45:04 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 09-Jul-2018 11:45:04 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 09-Jul-2018 11:45:05 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 09-Jul-2018 11:45:05 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 09-Jul-2018 11:45:05 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 09-Jul-2018 11:45:06 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 09-Jul-2018 11:45:06 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 09-Jul-2018 11:45:06 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 09-Jul-2018 11:45:06 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 09-Jul-2018 11:45:06 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 09-Jul-2018 11:45:06 | Running setup.py install for openpyxl: started |
| 09-Jul-2018 11:45:06 | Running setup.py install for openpyxl: finished with status 'done' |
| 09-Jul-2018 11:45:06 | Found existing installation: pika 0.11.0 |
| 09-Jul-2018 11:45:06 | Uninstalling pika-0.11.0: |
| 09-Jul-2018 11:45:08 | Successfully uninstalled pika-0.11.0 |
| 09-Jul-2018 11:45:08 | Running setup.py install for pika: started |
| 09-Jul-2018 11:45:08 | Running setup.py install for pika: finished with status 'done' |
| 09-Jul-2018 11:45:08 | Running setup.py install for pymongo: started |
| 09-Jul-2018 11:45:09 | Running setup.py install for pymongo: finished with status 'done' |
| 09-Jul-2018 11:45:09 | Running setup.py install for pytz: started |
| 09-Jul-2018 11:45:09 | Running setup.py install for pytz: finished with status 'done' |
| 09-Jul-2018 11:45:09 | Found existing installation: requests 2.18.4 |
| 09-Jul-2018 11:45:09 | Uninstalling requests-2.18.4: |
| 09-Jul-2018 11:45:12 | Successfully uninstalled requests-2.18.4 |
| 09-Jul-2018 11:45:12 | Running setup.py install for xlrd: started |
| 09-Jul-2018 11:45:12 | Running setup.py install for xlrd: finished with status 'done' |
| 09-Jul-2018 11:45:12 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 09-Jul-2018 11:45:14 | Removing intermediate container e43beeb371bc |
| 09-Jul-2018 11:45:14 | ---> 1adade7b5441 |
| 09-Jul-2018 11:45:14 | Step 8/11 : USER clowder |
| 09-Jul-2018 11:45:14 | ---> Running in 81b6b3ef3a2c |
| 09-Jul-2018 11:45:14 | Removing intermediate container 81b6b3ef3a2c |
| 09-Jul-2018 11:45:14 | ---> 387c6b6e4dca |
| 09-Jul-2018 11:45:14 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 09-Jul-2018 11:45:15 | ---> 8e54799664d2 |
| 09-Jul-2018 11:45:15 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 09-Jul-2018 11:45:16 | ---> Running in d2a51ae90212 |
| 09-Jul-2018 11:45:17 | Removing intermediate container d2a51ae90212 |
| 09-Jul-2018 11:45:17 | ---> 221501942fc2 |
| 09-Jul-2018 11:45:17 | Step 11/11 : CMD ["extractor"] |
| 09-Jul-2018 11:45:17 | ---> Running in c2ac4137e350 |
| 09-Jul-2018 11:45:17 | Removing intermediate container c2ac4137e350 |
| 09-Jul-2018 11:45:17 | ---> 2aae9b011ed9 |
| 09-Jul-2018 11:45:17 | Successfully built 2aae9b011ed9 |
| 09-Jul-2018 11:45:18 | Successfully tagged 19346:latest |
| 09-Jul-2018 11:45:18 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 09-Jul-2018 11:45:18 | cd59d3df6ad5: Preparing |
| 09-Jul-2018 11:45:18 | 2df3ce8facb5: Preparing |
| 09-Jul-2018 11:45:18 | 9384ea267435: Preparing |
| 09-Jul-2018 11:45:18 | 6102cdd8fe06: Preparing |
| 09-Jul-2018 11:45:18 | 0cdb02ac1d86: Preparing |
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| 09-Jul-2018 11:45:18 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:45:18 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:45:18 | 7f7a065d245a: Preparing |
| 09-Jul-2018 11:45:18 | f96e6b25195f: Preparing |
| 09-Jul-2018 11:45:18 | c56153825175: Preparing |
| 09-Jul-2018 11:45:18 | ae620432889d: Preparing |
| 09-Jul-2018 11:45:18 | a2022691bf95: Preparing |
| 09-Jul-2018 11:45:18 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:45:18 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:45:18 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:45:18 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:45:18 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:45:18 | c56153825175: Waiting |
| 09-Jul-2018 11:45:18 | ae620432889d: Waiting |
| 09-Jul-2018 11:45:18 | a2022691bf95: Waiting |
| 09-Jul-2018 11:45:18 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:45:18 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:45:19 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:45:19 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:45:19 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:45:19 | 6102cdd8fe06: Pushed |
| 09-Jul-2018 11:45:19 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:45:19 | cd59d3df6ad5: Pushed |
| 09-Jul-2018 11:45:19 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:45:19 | c56153825175: Layer already exists |
| 09-Jul-2018 11:45:20 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:45:20 | 2df3ce8facb5: Pushed |
| 09-Jul-2018 11:45:21 | 9384ea267435: Pushed |
| 09-Jul-2018 11:45:23 | browndog_v0.2.0: digest: sha256:291b1bef8dee8f5c89ffedfd1622c0ae11de21b3fc44dc7f3f2e1ed6eba6276a size: 3031 |
| 09-Jul-2018 11:45:23 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 09-Jul-2018 11:45:23 | cd59d3df6ad5: Preparing |
| 09-Jul-2018 11:45:23 | 2df3ce8facb5: Preparing |
| 09-Jul-2018 11:45:23 | 9384ea267435: Preparing |
| 09-Jul-2018 11:45:23 | 6102cdd8fe06: Preparing |
| 09-Jul-2018 11:45:23 | 0cdb02ac1d86: Preparing |
| 09-Jul-2018 11:45:23 | f2297bdfc824: Preparing |
| 09-Jul-2018 11:45:23 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:45:23 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:45:23 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:45:23 | 7f7a065d245a: Preparing |
| 09-Jul-2018 11:45:23 | f96e6b25195f: Preparing |
| 09-Jul-2018 11:45:23 | c56153825175: Preparing |
| 09-Jul-2018 11:45:23 | ae620432889d: Preparing |
| 09-Jul-2018 11:45:23 | a2022691bf95: Preparing |
| 09-Jul-2018 11:45:23 | c56153825175: Waiting |
| 09-Jul-2018 11:45:23 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:45:23 | ae620432889d: Waiting |
| 09-Jul-2018 11:45:23 | a2022691bf95: Waiting |
| 09-Jul-2018 11:45:23 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:45:23 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:45:23 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:45:24 | 6102cdd8fe06: Layer already exists |
| 09-Jul-2018 11:45:24 | 9384ea267435: Layer already exists |
| 09-Jul-2018 11:45:24 | 2df3ce8facb5: Layer already exists |
| 09-Jul-2018 11:45:24 | cd59d3df6ad5: Layer already exists |
| 09-Jul-2018 11:45:24 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:45:24 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:45:24 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:45:24 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:45:24 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:45:24 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:45:24 | c56153825175: Layer already exists |
| 09-Jul-2018 11:45:24 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:45:24 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:45:25 | browndog_v0.3.0: digest: sha256:291b1bef8dee8f5c89ffedfd1622c0ae11de21b3fc44dc7f3f2e1ed6eba6276a size: 3031 |
| 09-Jul-2018 11:45:25 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 09-Jul-2018 11:45:25 | cd59d3df6ad5: Preparing |
| 09-Jul-2018 11:45:25 | 2df3ce8facb5: Preparing |
| 09-Jul-2018 11:45:25 | 9384ea267435: Preparing |
| 09-Jul-2018 11:45:25 | 6102cdd8fe06: Preparing |
| 09-Jul-2018 11:45:25 | 0cdb02ac1d86: Preparing |
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| 09-Jul-2018 11:45:25 | 0fbe2bcb1bf9: Preparing |
| 09-Jul-2018 11:45:25 | 59669fcdd5eb: Preparing |
| 09-Jul-2018 11:45:25 | 7f7a065d245a: Preparing |
| 09-Jul-2018 11:45:25 | f96e6b25195f: Preparing |
| 09-Jul-2018 11:45:25 | c56153825175: Preparing |
| 09-Jul-2018 11:45:25 | ae620432889d: Preparing |
| 09-Jul-2018 11:45:25 | a2022691bf95: Preparing |
| 09-Jul-2018 11:45:25 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:45:25 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:45:25 | 59669fcdd5eb: Waiting |
| 09-Jul-2018 11:45:25 | 7f7a065d245a: Waiting |
| 09-Jul-2018 11:45:25 | f96e6b25195f: Waiting |
| 09-Jul-2018 11:45:25 | c56153825175: Waiting |
| 09-Jul-2018 11:45:25 | ae620432889d: Waiting |
| 09-Jul-2018 11:45:25 | a2022691bf95: Waiting |
| 09-Jul-2018 11:45:25 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:45:25 | 6102cdd8fe06: Layer already exists |
| 09-Jul-2018 11:45:25 | cd59d3df6ad5: Layer already exists |
| 09-Jul-2018 11:45:25 | 2df3ce8facb5: Layer already exists |
| 09-Jul-2018 11:45:25 | 9384ea267435: Layer already exists |
| 09-Jul-2018 11:45:25 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:45:25 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:45:25 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:45:25 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:45:25 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:45:26 | c56153825175: Layer already exists |
| 09-Jul-2018 11:45:26 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:45:26 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:45:26 | latest: digest: sha256:291b1bef8dee8f5c89ffedfd1622c0ae11de21b3fc44dc7f3f2e1ed6eba6276a size: 3031 |
| 09-Jul-2018 11:45:26 | Untagged: 19346:latest |
| 09-Jul-2018 11:45:26 | Sending build context to Docker daemon 12.1MB |
| 09-Jul-2018 11:45:26 | |
| 09-Jul-2018 11:45:26 | Step 1/11 : FROM clowder/pyclowder:1 |
| 09-Jul-2018 11:45:26 | ---> d1a9e970ed30 |
| 09-Jul-2018 11:45:26 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 09-Jul-2018 11:45:26 | ---> Using cache |
| 09-Jul-2018 11:45:26 | ---> ccdf0a6fab71 |
| 09-Jul-2018 11:45:26 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" |
| 09-Jul-2018 11:45:27 | ---> Running in e2efb0a755e8 |
| 09-Jul-2018 11:45:27 | Removing intermediate container e2efb0a755e8 |
| 09-Jul-2018 11:45:27 | ---> 558f3d3db7fc |
| 09-Jul-2018 11:45:27 | Step 4/11 : USER root |
| 09-Jul-2018 11:45:27 | ---> Running in 41f75121f271 |
| 09-Jul-2018 11:45:28 | Removing intermediate container 41f75121f271 |
| 09-Jul-2018 11:45:28 | ---> 39da5a5f0fe5 |
| 09-Jul-2018 11:45:28 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 09-Jul-2018 11:45:28 | ---> 97e083db01c9 |
| 09-Jul-2018 11:45:28 | Step 6/11 : RUN pip install --upgrade pip |
| 09-Jul-2018 11:45:29 | ---> Running in c43ce1757b7a |
| 09-Jul-2018 11:45:31 | Collecting pip |
| 09-Jul-2018 11:45:31 | Downloading https://files.pythonhosted.org/packages/0f/74/ecd13431bcc456ed390b44c8a6e917c1820365cbebcb6a8974d1cd045ab4/pip-10.0.1-py2.py3-none-any.whl (1.3MB) |
| 09-Jul-2018 11:45:31 | Installing collected packages: pip |
| 09-Jul-2018 11:45:31 | Found existing installation: pip 8.1.1 |
| 09-Jul-2018 11:45:31 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 09-Jul-2018 11:45:32 | Successfully installed pip-10.0.1 |
| 09-Jul-2018 11:45:34 | Removing intermediate container c43ce1757b7a |
| 09-Jul-2018 11:45:34 | ---> 4b38123ff639 |
| 09-Jul-2018 11:45:34 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 09-Jul-2018 11:45:34 | ---> Running in a55481cd3c86 |
| 09-Jul-2018 11:45:35 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 09-Jul-2018 11:45:35 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 09-Jul-2018 11:45:35 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 09-Jul-2018 11:45:36 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 09-Jul-2018 11:45:36 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 09-Jul-2018 11:45:36 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 09-Jul-2018 11:45:36 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 09-Jul-2018 11:45:37 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 09-Jul-2018 11:45:37 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 09-Jul-2018 11:45:37 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 09-Jul-2018 11:45:37 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 09-Jul-2018 11:45:38 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 09-Jul-2018 11:45:38 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 09-Jul-2018 11:45:38 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 09-Jul-2018 11:45:38 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 09-Jul-2018 11:45:38 | Running setup.py install for openpyxl: started |
| 09-Jul-2018 11:45:38 | Running setup.py install for openpyxl: finished with status 'done' |
| 09-Jul-2018 11:45:38 | Found existing installation: pika 0.11.0 |
| 09-Jul-2018 11:45:38 | Uninstalling pika-0.11.0: |
| 09-Jul-2018 11:45:40 | Successfully uninstalled pika-0.11.0 |
| 09-Jul-2018 11:45:40 | Running setup.py install for pika: started |
| 09-Jul-2018 11:45:40 | Running setup.py install for pika: finished with status 'done' |
| 09-Jul-2018 11:45:40 | Running setup.py install for pymongo: started |
| 09-Jul-2018 11:45:41 | Running setup.py install for pymongo: finished with status 'done' |
| 09-Jul-2018 11:45:41 | Running setup.py install for pytz: started |
| 09-Jul-2018 11:45:41 | Running setup.py install for pytz: finished with status 'done' |
| 09-Jul-2018 11:45:41 | Found existing installation: requests 2.18.4 |
| 09-Jul-2018 11:45:41 | Uninstalling requests-2.18.4: |
| 09-Jul-2018 11:45:45 | Successfully uninstalled requests-2.18.4 |
| 09-Jul-2018 11:45:45 | Running setup.py install for xlrd: started |
| 09-Jul-2018 11:45:45 | Running setup.py install for xlrd: finished with status 'done' |
| 09-Jul-2018 11:45:45 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 09-Jul-2018 11:45:47 | Removing intermediate container a55481cd3c86 |
| 09-Jul-2018 11:45:47 | ---> 51134a2f6b58 |
| 09-Jul-2018 11:45:47 | Step 8/11 : USER clowder |
| 09-Jul-2018 11:45:47 | ---> Running in 535737cea8f8 |
| 09-Jul-2018 11:45:48 | Removing intermediate container 535737cea8f8 |
| 09-Jul-2018 11:45:48 | ---> 6124617cbab0 |
| 09-Jul-2018 11:45:48 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 09-Jul-2018 11:45:49 | ---> 02bdb20a2891 |
| 09-Jul-2018 11:45:49 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 09-Jul-2018 11:45:49 | ---> Running in 0b7f92cd83e4 |
| 09-Jul-2018 11:45:49 | Removing intermediate container 0b7f92cd83e4 |
| 09-Jul-2018 11:45:49 | ---> 44f7962bb406 |
| 09-Jul-2018 11:45:49 | Step 11/11 : CMD ["extractor"] |
| 09-Jul-2018 11:45:50 | ---> Running in 37c98fb9f022 |
| 09-Jul-2018 11:45:50 | Removing intermediate container 37c98fb9f022 |
| 09-Jul-2018 11:45:50 | ---> 79a5f4fed249 |
| 09-Jul-2018 11:45:50 | Successfully built 79a5f4fed249 |
| 09-Jul-2018 11:45:50 | Successfully tagged 19346:latest |
| 09-Jul-2018 11:45:50 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 09-Jul-2018 11:45:50 | 63c49a1f8c3a: Preparing |
| 09-Jul-2018 11:45:50 | 638823b48516: Preparing |
| 09-Jul-2018 11:45:50 | 175cbf9c6c23: Preparing |
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| 09-Jul-2018 11:45:50 | f2297bdfc824: Waiting |
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| 09-Jul-2018 11:45:50 | ae620432889d: Waiting |
| 09-Jul-2018 11:45:51 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:45:51 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:45:51 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:45:51 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:45:52 | 63c49a1f8c3a: Pushed |
| 09-Jul-2018 11:45:52 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:45:52 | 49dd70d030b7: Pushed |
| 09-Jul-2018 11:45:52 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:45:52 | c56153825175: Layer already exists |
| 09-Jul-2018 11:45:52 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:45:53 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:45:53 | 638823b48516: Pushed |
| 09-Jul-2018 11:45:53 | 175cbf9c6c23: Pushed |
| 09-Jul-2018 11:45:56 | browndog_v0.2.0: digest: sha256:790141cca1a6d9acb7cbfaf464b7cffe8a2ac98ab6a3ef28bd1a0774418f9b5a size: 3031 |
| 09-Jul-2018 11:45:57 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 09-Jul-2018 11:45:57 | 63c49a1f8c3a: Preparing |
| 09-Jul-2018 11:45:57 | 638823b48516: Preparing |
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| 09-Jul-2018 11:45:57 | a2022691bf95: Preparing |
| 09-Jul-2018 11:45:57 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:45:57 | 0fbe2bcb1bf9: Waiting |
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| 09-Jul-2018 11:45:57 | ae620432889d: Waiting |
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| 09-Jul-2018 11:45:57 | a2022691bf95: Waiting |
| 09-Jul-2018 11:45:57 | 175cbf9c6c23: Layer already exists |
| 09-Jul-2018 11:45:57 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:45:57 | 49dd70d030b7: Layer already exists |
| 09-Jul-2018 11:45:57 | 63c49a1f8c3a: Layer already exists |
| 09-Jul-2018 11:45:57 | 638823b48516: Layer already exists |
| 09-Jul-2018 11:45:57 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:45:57 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:45:57 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:45:57 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:45:57 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:45:58 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:45:58 | c56153825175: Layer already exists |
| 09-Jul-2018 11:45:58 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:45:58 | browndog_v0.3.0: digest: sha256:790141cca1a6d9acb7cbfaf464b7cffe8a2ac98ab6a3ef28bd1a0774418f9b5a size: 3031 |
| 09-Jul-2018 11:45:58 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 09-Jul-2018 11:45:58 | 63c49a1f8c3a: Preparing |
| 09-Jul-2018 11:45:58 | 638823b48516: Preparing |
| 09-Jul-2018 11:45:58 | 175cbf9c6c23: Preparing |
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| 09-Jul-2018 11:45:58 | a2022691bf95: Preparing |
| 09-Jul-2018 11:45:58 | 59669fcdd5eb: Waiting |
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| 09-Jul-2018 11:45:58 | f2297bdfc824: Waiting |
| 09-Jul-2018 11:45:58 | 0fbe2bcb1bf9: Waiting |
| 09-Jul-2018 11:45:59 | 63c49a1f8c3a: Layer already exists |
| 09-Jul-2018 11:45:59 | 49dd70d030b7: Layer already exists |
| 09-Jul-2018 11:45:59 | 175cbf9c6c23: Layer already exists |
| 09-Jul-2018 11:45:59 | 0cdb02ac1d86: Layer already exists |
| 09-Jul-2018 11:45:59 | 638823b48516: Layer already exists |
| 09-Jul-2018 11:45:59 | f2297bdfc824: Layer already exists |
| 09-Jul-2018 11:45:59 | 0fbe2bcb1bf9: Layer already exists |
| 09-Jul-2018 11:45:59 | 7f7a065d245a: Layer already exists |
| 09-Jul-2018 11:45:59 | 59669fcdd5eb: Layer already exists |
| 09-Jul-2018 11:45:59 | f96e6b25195f: Layer already exists |
| 09-Jul-2018 11:45:59 | c56153825175: Layer already exists |
| 09-Jul-2018 11:45:59 | a2022691bf95: Layer already exists |
| 09-Jul-2018 11:45:59 | ae620432889d: Layer already exists |
| 09-Jul-2018 11:45:59 | latest: digest: sha256:790141cca1a6d9acb7cbfaf464b7cffe8a2ac98ab6a3ef28bd1a0774418f9b5a size: 3031 |
| 09-Jul-2018 11:46:00 | Untagged: 19346:latest |
| 09-Jul-2018 11:46:00 | Finished task 'docker build' with result: Success |
| 09-Jul-2018 11:46:00 | Running post build plugin 'Docker Container Cleanup' |
| 09-Jul-2018 11:46:00 | Running post build plugin 'NCover Results Collector' |
| 09-Jul-2018 11:46:00 | Running post build plugin 'Clover Results Collector' |
| 09-Jul-2018 11:46:00 | Running post build plugin 'npm Cache Cleanup' |
| 09-Jul-2018 11:46:00 | Running post build plugin 'Artifact Copier' |
| 09-Jul-2018 11:46:00 | Finalising the build... |
| 09-Jul-2018 11:46:00 | Stopping timer. |
| 09-Jul-2018 11:46:00 | Build CATS-MSC-JOB1-37 completed. |
| 09-Jul-2018 11:46:00 | Running on server: post build plugin 'NCover Results Collector' |
| 09-Jul-2018 11:46:00 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 09-Jul-2018 11:46:00 | Running on server: post build plugin 'Clover Delta Calculator' |
| 09-Jul-2018 11:46:00 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 09-Jul-2018 11:46:00 | All post build plugins have finished |
| 09-Jul-2018 11:46:00 | Generating build results summary... |
| 09-Jul-2018 11:46:00 | Saving build results to disk... |
| 09-Jul-2018 11:46:00 | Logging substituted variables... |
| 09-Jul-2018 11:46:00 | Indexing build results... |
| 09-Jul-2018 11:46:00 | Finished building CATS-MSC-JOB1-37. |