Build: #41 was successful
Job: Default Job was successful
Build log
The build generated 1,061 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 29-Sep-2019 18:00:57 | libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 |
| 29-Sep-2019 18:00:57 | libxext6 libxmu6 libxt6 wget x11-common |
| 29-Sep-2019 18:00:57 | 0 upgraded, 13 newly installed, 0 to remove and 55 not upgraded. |
| 29-Sep-2019 18:00:57 | Need to get 1402 kB of archives. |
| 29-Sep-2019 18:00:57 | After this operation, 5597 kB of additional disk space will be used. |
| 29-Sep-2019 18:00:57 | Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] |
| 29-Sep-2019 18:00:57 | Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] |
| 29-Sep-2019 18:00:57 | Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] |
| 29-Sep-2019 18:00:58 | Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB] |
| 29-Sep-2019 18:00:58 | Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB] |
| 29-Sep-2019 18:00:59 | Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] |
| 29-Sep-2019 18:00:59 | Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB] |
| 29-Sep-2019 18:00:59 | Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] |
| 29-Sep-2019 18:01:00 | Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] |
| 29-Sep-2019 18:01:00 | Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB] |
| 29-Sep-2019 18:01:01 | Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.5 [299 kB] |
| 29-Sep-2019 18:01:01 | Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] |
| 29-Sep-2019 18:01:02 | Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] |
| 29-Sep-2019 18:01:02 | debconf: delaying package configuration, since apt-utils is not installed |
| 29-Sep-2019 18:01:02 | Fetched 1402 kB in 5s (262 kB/s) |
| 29-Sep-2019 18:01:02 | Selecting previously unselected package libxau6:amd64. |
| 29-Sep-2019 18:01:02 | (Reading database ... |
| 29-Sep-2019 18:01:02 | (Reading database ... 5% |
| 29-Sep-2019 18:01:02 | (Reading database ... 10% |
| 29-Sep-2019 18:01:02 | (Reading database ... 15% |
| 29-Sep-2019 18:01:02 | (Reading database ... 20% |
| 29-Sep-2019 18:01:02 | (Reading database ... 25% |
| 29-Sep-2019 18:01:02 | (Reading database ... 30% |
| 29-Sep-2019 18:01:02 | (Reading database ... 35% |
| 29-Sep-2019 18:01:02 | (Reading database ... 40% |
| 29-Sep-2019 18:01:02 | (Reading database ... 45% |
| 29-Sep-2019 18:01:02 | (Reading database ... 50% |
| 29-Sep-2019 18:01:02 | (Reading database ... 55% |
| 29-Sep-2019 18:01:02 | (Reading database ... 60% |
| 29-Sep-2019 18:01:02 | (Reading database ... 65% |
| 29-Sep-2019 18:01:02 | (Reading database ... 70% |
| 29-Sep-2019 18:01:02 | (Reading database ... 75% |
| 29-Sep-2019 18:01:02 | (Reading database ... 80% |
| 29-Sep-2019 18:01:02 | (Reading database ... 85% |
| 29-Sep-2019 18:01:02 | (Reading database ... 90% |
| 29-Sep-2019 18:01:02 | (Reading database ... 95% |
| 29-Sep-2019 18:01:02 | (Reading database ... 100% |
| 29-Sep-2019 18:01:02 | (Reading database ... 6101 files and directories currently installed.) |
| 29-Sep-2019 18:01:02 | Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... |
| 29-Sep-2019 18:01:02 | Unpacking libxau6:amd64 (1:1.0.8-1) ... |
| 29-Sep-2019 18:01:03 | Selecting previously unselected package libxdmcp6:amd64. |
| 29-Sep-2019 18:01:03 | Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... |
| 29-Sep-2019 18:01:03 | Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 29-Sep-2019 18:01:03 | Selecting previously unselected package libxcb1:amd64. |
| 29-Sep-2019 18:01:03 | Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... |
| 29-Sep-2019 18:01:03 | Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 29-Sep-2019 18:01:03 | Selecting previously unselected package libx11-data. |
| 29-Sep-2019 18:01:03 | Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2.1_all.deb ... |
| 29-Sep-2019 18:01:03 | Unpacking libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 29-Sep-2019 18:01:04 | Selecting previously unselected package libx11-6:amd64. |
| 29-Sep-2019 18:01:04 | Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2.1_amd64.deb ... |
| 29-Sep-2019 18:01:04 | Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 29-Sep-2019 18:01:04 | Selecting previously unselected package libxext6:amd64. |
| 29-Sep-2019 18:01:04 | Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... |
| 29-Sep-2019 18:01:04 | Unpacking libxext6:amd64 (2:1.3.3-1) ... |
| 29-Sep-2019 18:01:05 | Selecting previously unselected package x11-common. |
| 29-Sep-2019 18:01:05 | Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3.1_all.deb ... |
| 29-Sep-2019 18:01:05 | dpkg-query: no packages found matching nux-tools |
| 29-Sep-2019 18:01:05 | Unpacking x11-common (1:7.7+13ubuntu3.1) ... |
| 29-Sep-2019 18:01:05 | Selecting previously unselected package libice6:amd64. |
| 29-Sep-2019 18:01:05 | Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... |
| 29-Sep-2019 18:01:05 | Unpacking libice6:amd64 (2:1.0.9-1) ... |
| 29-Sep-2019 18:01:05 | Selecting previously unselected package libsm6:amd64. |
| 29-Sep-2019 18:01:05 | Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... |
| 29-Sep-2019 18:01:06 | Unpacking libsm6:amd64 (2:1.2.2-1) ... |
| 29-Sep-2019 18:01:06 | Selecting previously unselected package libidn11:amd64. |
| 29-Sep-2019 18:01:06 | Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... |
| 29-Sep-2019 18:01:06 | Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 29-Sep-2019 18:01:07 | Selecting previously unselected package wget. |
| 29-Sep-2019 18:01:07 | Preparing to unpack .../wget_1.17.1-1ubuntu1.5_amd64.deb ... |
| 29-Sep-2019 18:01:07 | Unpacking wget (1.17.1-1ubuntu1.5) ... |
| 29-Sep-2019 18:01:07 | Selecting previously unselected package libxt6:amd64. |
| 29-Sep-2019 18:01:07 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 29-Sep-2019 18:01:07 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 29-Sep-2019 18:01:07 | Selecting previously unselected package libxmu6:amd64. |
| 29-Sep-2019 18:01:07 | Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... |
| 29-Sep-2019 18:01:08 | Unpacking libxmu6:amd64 (2:1.1.2-2) ... |
| 29-Sep-2019 18:01:08 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 29-Sep-2019 18:01:08 | Processing triggers for systemd (229-4ubuntu19) ... |
| 29-Sep-2019 18:01:08 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 29-Sep-2019 18:01:08 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 29-Sep-2019 18:01:08 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 29-Sep-2019 18:01:08 | Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 29-Sep-2019 18:01:09 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 29-Sep-2019 18:01:09 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 29-Sep-2019 18:01:09 | Setting up x11-common (1:7.7+13ubuntu3.1) ... |
| 29-Sep-2019 18:01:10 | debconf: unable to initialize frontend: Dialog |
| 29-Sep-2019 18:01:10 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 29-Sep-2019 18:01:10 | debconf: falling back to frontend: Readline |
| 29-Sep-2019 18:01:10 | debconf: unable to initialize frontend: Readline |
| 29-Sep-2019 18:01:10 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
| 29-Sep-2019 18:01:10 | debconf: falling back to frontend: Teletype |
| 29-Sep-2019 18:01:10 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 29-Sep-2019 18:01:10 | invoke-rc.d: could not determine current runlevel |
| 29-Sep-2019 18:01:10 | invoke-rc.d: policy-rc.d denied execution of start. |
| 29-Sep-2019 18:01:10 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 29-Sep-2019 18:01:10 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 29-Sep-2019 18:01:11 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 29-Sep-2019 18:01:11 | Setting up wget (1.17.1-1ubuntu1.5) ... |
| 29-Sep-2019 18:01:11 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 29-Sep-2019 18:01:11 | Setting up libxmu6:amd64 (2:1.1.2-2) ... |
| 29-Sep-2019 18:01:11 | Processing triggers for libc-bin (2.23-0ubuntu9) ... |
| 29-Sep-2019 18:01:11 | Processing triggers for systemd (229-4ubuntu19) ... |
| 29-Sep-2019 18:01:13 | Removing intermediate container 224a83452bdb |
| 29-Sep-2019 18:01:13 | ---> b371a995d255 |
| 29-Sep-2019 18:01:13 | Step 8/11 : USER clowder |
| 29-Sep-2019 18:01:13 | ---> Running in d7e5070b6db4 |
| 29-Sep-2019 18:01:13 | Removing intermediate container d7e5070b6db4 |
| 29-Sep-2019 18:01:13 | ---> 9d148492f613 |
| 29-Sep-2019 18:01:13 | Step 9/11 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ |
| 29-Sep-2019 18:01:14 | ---> d984aab163bd |
| 29-Sep-2019 18:01:14 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 29-Sep-2019 18:01:15 | ---> Running in 5b03fefed6c7 |
| 29-Sep-2019 18:01:15 | Removing intermediate container 5b03fefed6c7 |
| 29-Sep-2019 18:01:15 | ---> e243f78042f1 |
| 29-Sep-2019 18:01:15 | Step 11/11 : CMD ["extractor"] |
| 29-Sep-2019 18:01:16 | ---> Running in afc25bd93e36 |
| 29-Sep-2019 18:01:16 | Removing intermediate container afc25bd93e36 |
| 29-Sep-2019 18:01:16 | ---> d31cb7cde297 |
| 29-Sep-2019 18:01:16 | Successfully built d31cb7cde297 |
| 29-Sep-2019 18:01:16 | Successfully tagged 27272:latest |
| 29-Sep-2019 18:01:16 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 29-Sep-2019 18:01:17 | 6f46a10d390b: Preparing |
| 29-Sep-2019 18:01:17 | a9442f08c846: Preparing |
| 29-Sep-2019 18:01:17 | beab37d63dd7: Preparing |
| 29-Sep-2019 18:01:17 | 0cdb02ac1d86: Preparing |
| 29-Sep-2019 18:01:17 | f2297bdfc824: Preparing |
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| 29-Sep-2019 18:01:17 | c56153825175: Preparing |
| 29-Sep-2019 18:01:17 | ae620432889d: Preparing |
| 29-Sep-2019 18:01:17 | a2022691bf95: Preparing |
| 29-Sep-2019 18:01:17 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:01:17 | c56153825175: Waiting |
| 29-Sep-2019 18:01:17 | a2022691bf95: Waiting |
| 29-Sep-2019 18:01:17 | ae620432889d: Waiting |
| 29-Sep-2019 18:01:17 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:01:17 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:01:17 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:01:17 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:01:17 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:01:17 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:01:17 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:01:17 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:01:17 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:01:18 | c56153825175: Layer already exists |
| 29-Sep-2019 18:01:18 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:01:18 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:01:18 | 6f46a10d390b: Pushed |
| 29-Sep-2019 18:01:19 | a9442f08c846: Pushed |
| 29-Sep-2019 18:01:19 | beab37d63dd7: Pushed |
| 29-Sep-2019 18:01:22 | browndog_v0.2.0: digest: sha256:c0825e78d5d300b4991cadde9c0e796c6313a323baa3b9a086054f690114458a size: 2826 |
| 29-Sep-2019 18:01:22 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 29-Sep-2019 18:01:22 | 6f46a10d390b: Preparing |
| 29-Sep-2019 18:01:22 | a9442f08c846: Preparing |
| 29-Sep-2019 18:01:22 | beab37d63dd7: Preparing |
| 29-Sep-2019 18:01:22 | 0cdb02ac1d86: Preparing |
| 29-Sep-2019 18:01:22 | f2297bdfc824: Preparing |
| 29-Sep-2019 18:01:22 | 0fbe2bcb1bf9: Preparing |
| 29-Sep-2019 18:01:22 | 59669fcdd5eb: Preparing |
| 29-Sep-2019 18:01:22 | 7f7a065d245a: Preparing |
| 29-Sep-2019 18:01:22 | f96e6b25195f: Preparing |
| 29-Sep-2019 18:01:22 | c56153825175: Preparing |
| 29-Sep-2019 18:01:22 | ae620432889d: Preparing |
| 29-Sep-2019 18:01:22 | a2022691bf95: Preparing |
| 29-Sep-2019 18:01:22 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:01:22 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:01:22 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:01:22 | c56153825175: Waiting |
| 29-Sep-2019 18:01:22 | ae620432889d: Waiting |
| 29-Sep-2019 18:01:22 | a2022691bf95: Waiting |
| 29-Sep-2019 18:01:22 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:01:22 | beab37d63dd7: Layer already exists |
| 29-Sep-2019 18:01:22 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:01:22 | a9442f08c846: Layer already exists |
| 29-Sep-2019 18:01:22 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:01:22 | 6f46a10d390b: Layer already exists |
| 29-Sep-2019 18:01:23 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:01:23 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:01:23 | c56153825175: Layer already exists |
| 29-Sep-2019 18:01:23 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:01:23 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:01:23 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:01:23 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:01:23 | browndog_v0.3.0: digest: sha256:c0825e78d5d300b4991cadde9c0e796c6313a323baa3b9a086054f690114458a size: 2826 |
| 29-Sep-2019 18:01:23 | The push refers to repository [docker.io/clowder/extractors-msc-kidney] |
| 29-Sep-2019 18:01:23 | 6f46a10d390b: Preparing |
| 29-Sep-2019 18:01:23 | a9442f08c846: Preparing |
| 29-Sep-2019 18:01:23 | beab37d63dd7: Preparing |
| 29-Sep-2019 18:01:23 | 0cdb02ac1d86: Preparing |
| 29-Sep-2019 18:01:23 | f2297bdfc824: Preparing |
| 29-Sep-2019 18:01:23 | 0fbe2bcb1bf9: Preparing |
| 29-Sep-2019 18:01:23 | 59669fcdd5eb: Preparing |
| 29-Sep-2019 18:01:23 | 7f7a065d245a: Preparing |
| 29-Sep-2019 18:01:23 | f96e6b25195f: Preparing |
| 29-Sep-2019 18:01:23 | c56153825175: Preparing |
| 29-Sep-2019 18:01:23 | ae620432889d: Preparing |
| 29-Sep-2019 18:01:23 | a2022691bf95: Preparing |
| 29-Sep-2019 18:01:23 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:01:23 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:01:23 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:01:23 | c56153825175: Waiting |
| 29-Sep-2019 18:01:23 | ae620432889d: Waiting |
| 29-Sep-2019 18:01:23 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:01:23 | a2022691bf95: Waiting |
| 29-Sep-2019 18:01:24 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:01:24 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:01:24 | beab37d63dd7: Layer already exists |
| 29-Sep-2019 18:01:24 | a9442f08c846: Layer already exists |
| 29-Sep-2019 18:01:24 | 6f46a10d390b: Layer already exists |
| 29-Sep-2019 18:01:24 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:01:24 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:01:24 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:01:24 | c56153825175: Layer already exists |
| 29-Sep-2019 18:01:24 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:01:24 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:01:24 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:01:25 | latest: digest: sha256:c0825e78d5d300b4991cadde9c0e796c6313a323baa3b9a086054f690114458a size: 2826 |
| 29-Sep-2019 18:01:25 | Untagged: 27272:latest |
| 29-Sep-2019 18:01:25 | Sending build context to Docker daemon 67.07kB |
| 29-Sep-2019 18:01:25 | |
| 29-Sep-2019 18:01:25 | Step 1/11 : FROM clowder/pyclowder:1 |
| 29-Sep-2019 18:01:25 | ---> d1a9e970ed30 |
| 29-Sep-2019 18:01:25 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 29-Sep-2019 18:01:25 | ---> Running in fce53a964d3c |
| 29-Sep-2019 18:01:26 | Removing intermediate container fce53a964d3c |
| 29-Sep-2019 18:01:26 | ---> c791d09a3dfd |
| 29-Sep-2019 18:01:26 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.IsletExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Islet.py" |
| 29-Sep-2019 18:01:26 | ---> Running in 515364cba9c0 |
| 29-Sep-2019 18:01:26 | Removing intermediate container 515364cba9c0 |
| 29-Sep-2019 18:01:26 | ---> 959e71da0b5b |
| 29-Sep-2019 18:01:26 | Step 4/11 : USER root |
| 29-Sep-2019 18:01:26 | ---> Running in 7ba20c920693 |
| 29-Sep-2019 18:01:27 | Removing intermediate container 7ba20c920693 |
| 29-Sep-2019 18:01:27 | ---> 00fa3fb8a2bf |
| 29-Sep-2019 18:01:27 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 29-Sep-2019 18:01:27 | ---> 752a274f3682 |
| 29-Sep-2019 18:01:27 | Step 6/11 : RUN pip install --upgrade pip |
| 29-Sep-2019 18:01:27 | ---> Running in 163c89419a64 |
| 29-Sep-2019 18:01:29 | Collecting pip |
| 29-Sep-2019 18:01:29 | Downloading https://files.pythonhosted.org/packages/30/db/9e38760b32e3e7f40cce46dd5fb107b8c73840df38f0046d8e6514e675a1/pip-19.2.3-py2.py3-none-any.whl (1.4MB) |
| 29-Sep-2019 18:01:29 | Installing collected packages: pip |
| 29-Sep-2019 18:01:29 | Found existing installation: pip 8.1.1 |
| 29-Sep-2019 18:01:29 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 29-Sep-2019 18:01:30 | Successfully installed pip-19.2.3 |
| 29-Sep-2019 18:01:31 | Removing intermediate container 163c89419a64 |
| 29-Sep-2019 18:01:31 | ---> f67d515719db |
| 29-Sep-2019 18:01:31 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 29-Sep-2019 18:01:31 | ---> Running in ebb3d37ad167 |
| 29-Sep-2019 18:01:32 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 29-Sep-2019 18:01:32 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 29-Sep-2019 18:01:32 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 29-Sep-2019 18:01:32 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 29-Sep-2019 18:01:33 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 29-Sep-2019 18:01:33 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 29-Sep-2019 18:01:33 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 29-Sep-2019 18:01:34 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 29-Sep-2019 18:01:34 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 29-Sep-2019 18:01:34 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 29-Sep-2019 18:01:35 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 29-Sep-2019 18:01:35 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 29-Sep-2019 18:01:35 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 29-Sep-2019 18:01:35 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 29-Sep-2019 18:01:35 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 29-Sep-2019 18:01:35 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 29-Sep-2019 18:01:35 | Running setup.py install for openpyxl: started |
| 29-Sep-2019 18:01:35 | Running setup.py install for openpyxl: finished with status 'done' |
| 29-Sep-2019 18:01:35 | Found existing installation: pika 0.11.0 |
| 29-Sep-2019 18:01:35 | Uninstalling pika-0.11.0: |
| 29-Sep-2019 18:01:36 | Successfully uninstalled pika-0.11.0 |
| 29-Sep-2019 18:01:36 | Running setup.py install for pika: started |
| 29-Sep-2019 18:01:36 | Running setup.py install for pika: finished with status 'done' |
| 29-Sep-2019 18:01:36 | Running setup.py install for pymongo: started |
| 29-Sep-2019 18:01:36 | Running setup.py install for pymongo: finished with status 'done' |
| 29-Sep-2019 18:01:36 | Running setup.py install for pytz: started |
| 29-Sep-2019 18:01:37 | Running setup.py install for pytz: finished with status 'done' |
| 29-Sep-2019 18:01:37 | Found existing installation: requests 2.18.4 |
| 29-Sep-2019 18:01:37 | Uninstalling requests-2.18.4: |
| 29-Sep-2019 18:01:37 | Successfully uninstalled requests-2.18.4 |
| 29-Sep-2019 18:01:37 | Running setup.py install for xlrd: started |
| 29-Sep-2019 18:01:37 | Running setup.py install for xlrd: finished with status 'done' |
| 29-Sep-2019 18:01:37 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 29-Sep-2019 18:01:38 | Removing intermediate container ebb3d37ad167 |
| 29-Sep-2019 18:01:38 | ---> f6d31d106879 |
| 29-Sep-2019 18:01:38 | Step 8/11 : USER clowder |
| 29-Sep-2019 18:01:39 | ---> Running in 80ef2dfbfafd |
| 29-Sep-2019 18:01:39 | Removing intermediate container 80ef2dfbfafd |
| 29-Sep-2019 18:01:39 | ---> 39fe4340617a |
| 29-Sep-2019 18:01:39 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 29-Sep-2019 18:01:40 | ---> 5a34471ba0d0 |
| 29-Sep-2019 18:01:40 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 29-Sep-2019 18:01:40 | ---> Running in 16fb9a1174b7 |
| 29-Sep-2019 18:01:41 | Removing intermediate container 16fb9a1174b7 |
| 29-Sep-2019 18:01:41 | ---> 7fb5865208aa |
| 29-Sep-2019 18:01:41 | Step 11/11 : CMD ["extractor"] |
| 29-Sep-2019 18:01:41 | ---> Running in 5697b5cd5af0 |
| 29-Sep-2019 18:01:42 | Removing intermediate container 5697b5cd5af0 |
| 29-Sep-2019 18:01:42 | ---> c14962c950de |
| 29-Sep-2019 18:01:42 | Successfully built c14962c950de |
| 29-Sep-2019 18:01:42 | Successfully tagged 27272:latest |
| 29-Sep-2019 18:01:42 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 29-Sep-2019 18:01:42 | c2a2fc1d0908: Preparing |
| 29-Sep-2019 18:01:42 | 7812ff9c27e0: Preparing |
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| 29-Sep-2019 18:01:42 | f2297bdfc824: Waiting |
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| 29-Sep-2019 18:01:42 | a2022691bf95: Waiting |
| 29-Sep-2019 18:01:42 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:01:42 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:01:43 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:01:43 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:01:43 | 7f7a065d245a: Layer already exists |
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| 29-Sep-2019 18:01:43 | c2a2fc1d0908: Pushed |
| 29-Sep-2019 18:01:43 | d44cb6002f32: Pushed |
| 29-Sep-2019 18:01:43 | c56153825175: Layer already exists |
| 29-Sep-2019 18:01:44 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:01:44 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:01:44 | 7812ff9c27e0: Pushed |
| 29-Sep-2019 18:01:44 | 6014487f93d0: Pushed |
| 29-Sep-2019 18:01:47 | browndog_v0.2.0: digest: sha256:5fe0f4fdba5d6f647be31acde594b96e7cfebc2b14520e3dfbc9914c830b1d88 size: 3031 |
| 29-Sep-2019 18:01:47 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 29-Sep-2019 18:01:47 | c2a2fc1d0908: Preparing |
| 29-Sep-2019 18:01:47 | 7812ff9c27e0: Preparing |
| 29-Sep-2019 18:01:47 | 6014487f93d0: Preparing |
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| 29-Sep-2019 18:01:47 | a2022691bf95: Preparing |
| 29-Sep-2019 18:01:47 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:01:47 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:01:47 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:01:47 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:01:47 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:01:47 | c56153825175: Waiting |
| 29-Sep-2019 18:01:47 | ae620432889d: Waiting |
| 29-Sep-2019 18:01:47 | a2022691bf95: Waiting |
| 29-Sep-2019 18:01:47 | 6014487f93d0: Layer already exists |
| 29-Sep-2019 18:01:47 | d44cb6002f32: Layer already exists |
| 29-Sep-2019 18:01:47 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:01:47 | 7812ff9c27e0: Layer already exists |
| 29-Sep-2019 18:01:47 | c2a2fc1d0908: Layer already exists |
| 29-Sep-2019 18:01:48 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:01:48 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:01:48 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:01:48 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:01:48 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:01:48 | c56153825175: Layer already exists |
| 29-Sep-2019 18:01:48 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:01:48 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:01:48 | browndog_v0.3.0: digest: sha256:5fe0f4fdba5d6f647be31acde594b96e7cfebc2b14520e3dfbc9914c830b1d88 size: 3031 |
| 29-Sep-2019 18:01:48 | The push refers to repository [docker.io/clowder/extractors-msc-islet] |
| 29-Sep-2019 18:01:49 | c2a2fc1d0908: Preparing |
| 29-Sep-2019 18:01:49 | 7812ff9c27e0: Preparing |
| 29-Sep-2019 18:01:49 | 6014487f93d0: Preparing |
| 29-Sep-2019 18:01:49 | d44cb6002f32: Preparing |
| 29-Sep-2019 18:01:49 | 0cdb02ac1d86: Preparing |
| 29-Sep-2019 18:01:49 | f2297bdfc824: Preparing |
| 29-Sep-2019 18:01:49 | 0fbe2bcb1bf9: Preparing |
| 29-Sep-2019 18:01:49 | 59669fcdd5eb: Preparing |
| 29-Sep-2019 18:01:49 | 7f7a065d245a: Preparing |
| 29-Sep-2019 18:01:49 | f96e6b25195f: Preparing |
| 29-Sep-2019 18:01:49 | c56153825175: Preparing |
| 29-Sep-2019 18:01:49 | ae620432889d: Preparing |
| 29-Sep-2019 18:01:49 | a2022691bf95: Preparing |
| 29-Sep-2019 18:01:49 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:01:49 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:01:49 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:01:49 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:01:49 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:01:49 | c56153825175: Waiting |
| 29-Sep-2019 18:01:49 | ae620432889d: Waiting |
| 29-Sep-2019 18:01:49 | a2022691bf95: Waiting |
| 29-Sep-2019 18:01:49 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:01:49 | 7812ff9c27e0: Layer already exists |
| 29-Sep-2019 18:01:49 | 6014487f93d0: Layer already exists |
| 29-Sep-2019 18:01:49 | d44cb6002f32: Layer already exists |
| 29-Sep-2019 18:01:49 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:01:49 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:01:49 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:01:49 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:01:49 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:01:49 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:01:49 | c56153825175: Layer already exists |
| 29-Sep-2019 18:01:49 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:01:49 | c2a2fc1d0908: Layer already exists |
| 29-Sep-2019 18:01:50 | latest: digest: sha256:5fe0f4fdba5d6f647be31acde594b96e7cfebc2b14520e3dfbc9914c830b1d88 size: 3031 |
| 29-Sep-2019 18:01:50 | Untagged: 27272:latest |
| 29-Sep-2019 18:01:50 | Sending build context to Docker daemon 66.05kB |
| 29-Sep-2019 18:01:50 | |
| 29-Sep-2019 18:01:50 | Step 1/11 : FROM clowder/pyclowder:1 |
| 29-Sep-2019 18:01:50 | ---> d1a9e970ed30 |
| 29-Sep-2019 18:01:50 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 29-Sep-2019 18:01:50 | ---> Using cache |
| 29-Sep-2019 18:01:50 | ---> c791d09a3dfd |
| 29-Sep-2019 18:01:50 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.ChemCBCExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Chem.py" |
| 29-Sep-2019 18:01:50 | ---> Running in 7d5a0cf14945 |
| 29-Sep-2019 18:01:50 | Removing intermediate container 7d5a0cf14945 |
| 29-Sep-2019 18:01:50 | ---> 0537ab400744 |
| 29-Sep-2019 18:01:50 | Step 4/11 : USER root |
| 29-Sep-2019 18:01:51 | ---> Running in ffc33a38d80a |
| 29-Sep-2019 18:01:51 | Removing intermediate container ffc33a38d80a |
| 29-Sep-2019 18:01:51 | ---> 471da33be0f3 |
| 29-Sep-2019 18:01:51 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 29-Sep-2019 18:01:51 | ---> 048245d32d81 |
| 29-Sep-2019 18:01:51 | Step 6/11 : RUN pip install --upgrade pip |
| 29-Sep-2019 18:01:52 | ---> Running in 3b3b83260bc0 |
| 29-Sep-2019 18:01:53 | Collecting pip |
| 29-Sep-2019 18:01:53 | Downloading https://files.pythonhosted.org/packages/30/db/9e38760b32e3e7f40cce46dd5fb107b8c73840df38f0046d8e6514e675a1/pip-19.2.3-py2.py3-none-any.whl (1.4MB) |
| 29-Sep-2019 18:01:53 | Installing collected packages: pip |
| 29-Sep-2019 18:01:53 | Found existing installation: pip 8.1.1 |
| 29-Sep-2019 18:01:53 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 29-Sep-2019 18:01:54 | Successfully installed pip-19.2.3 |
| 29-Sep-2019 18:01:55 | Removing intermediate container 3b3b83260bc0 |
| 29-Sep-2019 18:01:55 | ---> 612e4b04fc83 |
| 29-Sep-2019 18:01:55 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 29-Sep-2019 18:01:56 | ---> Running in 6e64e4cfdcfb |
| 29-Sep-2019 18:01:57 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 29-Sep-2019 18:01:57 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 29-Sep-2019 18:01:57 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 29-Sep-2019 18:01:57 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 29-Sep-2019 18:01:57 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 29-Sep-2019 18:01:57 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 29-Sep-2019 18:01:57 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 29-Sep-2019 18:01:58 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 29-Sep-2019 18:01:58 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 29-Sep-2019 18:01:58 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 29-Sep-2019 18:01:59 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 29-Sep-2019 18:01:59 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 29-Sep-2019 18:01:59 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 29-Sep-2019 18:01:59 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 29-Sep-2019 18:01:59 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 29-Sep-2019 18:02:00 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 29-Sep-2019 18:02:00 | Running setup.py install for openpyxl: started |
| 29-Sep-2019 18:02:00 | Running setup.py install for openpyxl: finished with status 'done' |
| 29-Sep-2019 18:02:00 | Found existing installation: pika 0.11.0 |
| 29-Sep-2019 18:02:00 | Uninstalling pika-0.11.0: |
| 29-Sep-2019 18:02:00 | Successfully uninstalled pika-0.11.0 |
| 29-Sep-2019 18:02:00 | Running setup.py install for pika: started |
| 29-Sep-2019 18:02:00 | Running setup.py install for pika: finished with status 'done' |
| 29-Sep-2019 18:02:00 | Running setup.py install for pymongo: started |
| 29-Sep-2019 18:02:00 | Running setup.py install for pymongo: finished with status 'done' |
| 29-Sep-2019 18:02:00 | Running setup.py install for pytz: started |
| 29-Sep-2019 18:02:01 | Running setup.py install for pytz: finished with status 'done' |
| 29-Sep-2019 18:02:01 | Found existing installation: requests 2.18.4 |
| 29-Sep-2019 18:02:01 | Uninstalling requests-2.18.4: |
| 29-Sep-2019 18:02:01 | Successfully uninstalled requests-2.18.4 |
| 29-Sep-2019 18:02:01 | Running setup.py install for xlrd: started |
| 29-Sep-2019 18:02:02 | Running setup.py install for xlrd: finished with status 'done' |
| 29-Sep-2019 18:02:02 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 29-Sep-2019 18:02:03 | Removing intermediate container 6e64e4cfdcfb |
| 29-Sep-2019 18:02:03 | ---> 40ae290bb47f |
| 29-Sep-2019 18:02:03 | Step 8/11 : USER clowder |
| 29-Sep-2019 18:02:03 | ---> Running in 0c996fa6c894 |
| 29-Sep-2019 18:02:04 | Removing intermediate container 0c996fa6c894 |
| 29-Sep-2019 18:02:04 | ---> 86313d2b860e |
| 29-Sep-2019 18:02:04 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 29-Sep-2019 18:02:04 | ---> 9a413d5b4257 |
| 29-Sep-2019 18:02:04 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 29-Sep-2019 18:02:05 | ---> Running in de5e1c9337c6 |
| 29-Sep-2019 18:02:05 | Removing intermediate container de5e1c9337c6 |
| 29-Sep-2019 18:02:05 | ---> c048a3256c55 |
| 29-Sep-2019 18:02:05 | Step 11/11 : CMD ["extractor"] |
| 29-Sep-2019 18:02:05 | ---> Running in 977cf1830fb5 |
| 29-Sep-2019 18:02:05 | Removing intermediate container 977cf1830fb5 |
| 29-Sep-2019 18:02:05 | ---> f7f86432fec8 |
| 29-Sep-2019 18:02:05 | Successfully built f7f86432fec8 |
| 29-Sep-2019 18:02:05 | Successfully tagged 27272:latest |
| 29-Sep-2019 18:02:05 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 29-Sep-2019 18:02:06 | cb26aa462bf5: Preparing |
| 29-Sep-2019 18:02:06 | 0ebfb30ab32e: Preparing |
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| 29-Sep-2019 18:02:06 | a2022691bf95: Preparing |
| 29-Sep-2019 18:02:06 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:02:06 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:02:06 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:02:06 | c56153825175: Waiting |
| 29-Sep-2019 18:02:06 | ae620432889d: Waiting |
| 29-Sep-2019 18:02:06 | a2022691bf95: Waiting |
| 29-Sep-2019 18:02:06 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:02:06 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:02:06 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:02:06 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:02:07 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:02:07 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:02:07 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:02:07 | 3a88d736f84b: Pushed |
| 29-Sep-2019 18:02:07 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:02:07 | cb26aa462bf5: Pushed |
| 29-Sep-2019 18:02:08 | c56153825175: Layer already exists |
| 29-Sep-2019 18:02:08 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:02:08 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:02:08 | eae28636f377: Pushed |
| 29-Sep-2019 18:02:08 | 0ebfb30ab32e: Pushed |
| 29-Sep-2019 18:02:10 | browndog_v0.2.0: digest: sha256:7344649057a1a3f0482b3ab9f0fa39dfc42f9648c25a3fb905b9b7fbb525a58e size: 3031 |
| 29-Sep-2019 18:02:11 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 29-Sep-2019 18:02:11 | cb26aa462bf5: Preparing |
| 29-Sep-2019 18:02:11 | 0ebfb30ab32e: Preparing |
| 29-Sep-2019 18:02:11 | eae28636f377: Preparing |
| 29-Sep-2019 18:02:11 | 3a88d736f84b: Preparing |
| 29-Sep-2019 18:02:11 | 0cdb02ac1d86: Preparing |
| 29-Sep-2019 18:02:11 | f2297bdfc824: Preparing |
| 29-Sep-2019 18:02:11 | 0fbe2bcb1bf9: Preparing |
| 29-Sep-2019 18:02:11 | 59669fcdd5eb: Preparing |
| 29-Sep-2019 18:02:11 | 7f7a065d245a: Preparing |
| 29-Sep-2019 18:02:11 | f96e6b25195f: Preparing |
| 29-Sep-2019 18:02:11 | c56153825175: Preparing |
| 29-Sep-2019 18:02:11 | ae620432889d: Preparing |
| 29-Sep-2019 18:02:11 | a2022691bf95: Preparing |
| 29-Sep-2019 18:02:11 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:02:11 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:02:11 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:02:11 | c56153825175: Waiting |
| 29-Sep-2019 18:02:11 | ae620432889d: Waiting |
| 29-Sep-2019 18:02:11 | a2022691bf95: Waiting |
| 29-Sep-2019 18:02:11 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:02:11 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:02:11 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:02:11 | cb26aa462bf5: Layer already exists |
| 29-Sep-2019 18:02:11 | eae28636f377: Layer already exists |
| 29-Sep-2019 18:02:11 | 0ebfb30ab32e: Layer already exists |
| 29-Sep-2019 18:02:11 | 3a88d736f84b: Layer already exists |
| 29-Sep-2019 18:02:11 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:02:11 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:02:11 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:02:11 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:02:11 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:02:12 | c56153825175: Layer already exists |
| 29-Sep-2019 18:02:12 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:02:12 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:02:12 | browndog_v0.3.0: digest: sha256:7344649057a1a3f0482b3ab9f0fa39dfc42f9648c25a3fb905b9b7fbb525a58e size: 3031 |
| 29-Sep-2019 18:02:12 | The push refers to repository [docker.io/clowder/extractors-msc-chemcbc] |
| 29-Sep-2019 18:02:13 | cb26aa462bf5: Preparing |
| 29-Sep-2019 18:02:13 | 0ebfb30ab32e: Preparing |
| 29-Sep-2019 18:02:13 | eae28636f377: Preparing |
| 29-Sep-2019 18:02:13 | 3a88d736f84b: Preparing |
| 29-Sep-2019 18:02:13 | 0cdb02ac1d86: Preparing |
| 29-Sep-2019 18:02:13 | f2297bdfc824: Preparing |
| 29-Sep-2019 18:02:13 | 0fbe2bcb1bf9: Preparing |
| 29-Sep-2019 18:02:13 | 59669fcdd5eb: Preparing |
| 29-Sep-2019 18:02:13 | 7f7a065d245a: Preparing |
| 29-Sep-2019 18:02:13 | f96e6b25195f: Preparing |
| 29-Sep-2019 18:02:13 | c56153825175: Preparing |
| 29-Sep-2019 18:02:13 | ae620432889d: Preparing |
| 29-Sep-2019 18:02:13 | a2022691bf95: Preparing |
| 29-Sep-2019 18:02:13 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:02:13 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:02:13 | c56153825175: Waiting |
| 29-Sep-2019 18:02:13 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:02:13 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:02:13 | ae620432889d: Waiting |
| 29-Sep-2019 18:02:13 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:02:13 | a2022691bf95: Waiting |
| 29-Sep-2019 18:02:13 | cb26aa462bf5: Layer already exists |
| 29-Sep-2019 18:02:13 | 3a88d736f84b: Layer already exists |
| 29-Sep-2019 18:02:13 | 0ebfb30ab32e: Layer already exists |
| 29-Sep-2019 18:02:13 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:02:13 | eae28636f377: Layer already exists |
| 29-Sep-2019 18:02:13 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:02:13 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:02:13 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:02:13 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:02:13 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:02:13 | c56153825175: Layer already exists |
| 29-Sep-2019 18:02:13 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:02:14 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:02:14 | latest: digest: sha256:7344649057a1a3f0482b3ab9f0fa39dfc42f9648c25a3fb905b9b7fbb525a58e size: 3031 |
| 29-Sep-2019 18:02:14 | Untagged: 27272:latest |
| 29-Sep-2019 18:02:15 | Sending build context to Docker daemon 198.1kB |
| 29-Sep-2019 18:02:15 | |
| 29-Sep-2019 18:02:15 | Step 1/11 : FROM clowder/pyclowder:1 |
| 29-Sep-2019 18:02:15 | ---> d1a9e970ed30 |
| 29-Sep-2019 18:02:15 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 29-Sep-2019 18:02:15 | ---> Using cache |
| 29-Sep-2019 18:02:15 | ---> c791d09a3dfd |
| 29-Sep-2019 18:02:15 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.MonitorExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Monitor.py" |
| 29-Sep-2019 18:02:15 | ---> Running in 2a2fc2e2cee6 |
| 29-Sep-2019 18:02:15 | Removing intermediate container 2a2fc2e2cee6 |
| 29-Sep-2019 18:02:15 | ---> 97808424e665 |
| 29-Sep-2019 18:02:15 | Step 4/11 : USER root |
| 29-Sep-2019 18:02:16 | ---> Running in f4084919ca3c |
| 29-Sep-2019 18:02:16 | Removing intermediate container f4084919ca3c |
| 29-Sep-2019 18:02:16 | ---> e16540eacfcc |
| 29-Sep-2019 18:02:16 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 29-Sep-2019 18:02:16 | ---> 3d2023c02582 |
| 29-Sep-2019 18:02:16 | Step 6/11 : RUN pip install --upgrade pip |
| 29-Sep-2019 18:02:17 | ---> Running in 5f308c33dfdf |
| 29-Sep-2019 18:02:18 | Collecting pip |
| 29-Sep-2019 18:02:18 | Downloading https://files.pythonhosted.org/packages/30/db/9e38760b32e3e7f40cce46dd5fb107b8c73840df38f0046d8e6514e675a1/pip-19.2.3-py2.py3-none-any.whl (1.4MB) |
| 29-Sep-2019 18:02:18 | Installing collected packages: pip |
| 29-Sep-2019 18:02:18 | Found existing installation: pip 8.1.1 |
| 29-Sep-2019 18:02:18 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 29-Sep-2019 18:02:19 | Successfully installed pip-19.2.3 |
| 29-Sep-2019 18:02:20 | Removing intermediate container 5f308c33dfdf |
| 29-Sep-2019 18:02:20 | ---> 511433fda698 |
| 29-Sep-2019 18:02:20 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 29-Sep-2019 18:02:21 | ---> Running in 73aa0865a867 |
| 29-Sep-2019 18:02:22 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 29-Sep-2019 18:02:22 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 29-Sep-2019 18:02:22 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 29-Sep-2019 18:02:22 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 29-Sep-2019 18:02:22 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 29-Sep-2019 18:02:22 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 29-Sep-2019 18:02:22 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 29-Sep-2019 18:02:23 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 29-Sep-2019 18:02:23 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 29-Sep-2019 18:02:24 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 29-Sep-2019 18:02:24 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 29-Sep-2019 18:02:24 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 29-Sep-2019 18:02:24 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 29-Sep-2019 18:02:24 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 29-Sep-2019 18:02:24 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 29-Sep-2019 18:02:25 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 29-Sep-2019 18:02:25 | Running setup.py install for openpyxl: started |
| 29-Sep-2019 18:02:25 | Running setup.py install for openpyxl: finished with status 'done' |
| 29-Sep-2019 18:02:25 | Found existing installation: pika 0.11.0 |
| 29-Sep-2019 18:02:25 | Uninstalling pika-0.11.0: |
| 29-Sep-2019 18:02:25 | Successfully uninstalled pika-0.11.0 |
| 29-Sep-2019 18:02:25 | Running setup.py install for pika: started |
| 29-Sep-2019 18:02:25 | Running setup.py install for pika: finished with status 'done' |
| 29-Sep-2019 18:02:25 | Running setup.py install for pymongo: started |
| 29-Sep-2019 18:02:25 | Running setup.py install for pymongo: finished with status 'done' |
| 29-Sep-2019 18:02:25 | Running setup.py install for pytz: started |
| 29-Sep-2019 18:02:26 | Running setup.py install for pytz: finished with status 'done' |
| 29-Sep-2019 18:02:26 | Found existing installation: requests 2.18.4 |
| 29-Sep-2019 18:02:26 | Uninstalling requests-2.18.4: |
| 29-Sep-2019 18:02:26 | Successfully uninstalled requests-2.18.4 |
| 29-Sep-2019 18:02:26 | Running setup.py install for xlrd: started |
| 29-Sep-2019 18:02:27 | Running setup.py install for xlrd: finished with status 'done' |
| 29-Sep-2019 18:02:27 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 29-Sep-2019 18:02:28 | Removing intermediate container 73aa0865a867 |
| 29-Sep-2019 18:02:28 | ---> 86e8199fd90c |
| 29-Sep-2019 18:02:28 | Step 8/11 : USER clowder |
| 29-Sep-2019 18:02:28 | ---> Running in 8e3b1f37147c |
| 29-Sep-2019 18:02:29 | Removing intermediate container 8e3b1f37147c |
| 29-Sep-2019 18:02:29 | ---> 62660b2528eb |
| 29-Sep-2019 18:02:29 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 29-Sep-2019 18:02:30 | ---> ec0d451061e5 |
| 29-Sep-2019 18:02:30 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 29-Sep-2019 18:02:30 | ---> Running in 722503264f62 |
| 29-Sep-2019 18:02:30 | Removing intermediate container 722503264f62 |
| 29-Sep-2019 18:02:30 | ---> fe61b8da87b5 |
| 29-Sep-2019 18:02:30 | Step 11/11 : CMD ["extractor"] |
| 29-Sep-2019 18:02:30 | ---> Running in a94f88deb2a8 |
| 29-Sep-2019 18:02:30 | Removing intermediate container a94f88deb2a8 |
| 29-Sep-2019 18:02:30 | ---> 72842b2e768e |
| 29-Sep-2019 18:02:30 | Successfully built 72842b2e768e |
| 29-Sep-2019 18:02:31 | Successfully tagged 27272:latest |
| 29-Sep-2019 18:02:31 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 29-Sep-2019 18:02:31 | 3e6f8dfc13cb: Preparing |
| 29-Sep-2019 18:02:31 | 67e175d1e656: Preparing |
| 29-Sep-2019 18:02:31 | 5f4ed6b379b0: Preparing |
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| 29-Sep-2019 18:02:31 | c56153825175: Preparing |
| 29-Sep-2019 18:02:31 | ae620432889d: Preparing |
| 29-Sep-2019 18:02:31 | a2022691bf95: Preparing |
| 29-Sep-2019 18:02:31 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:02:31 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:02:31 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:02:31 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:02:31 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:02:31 | ae620432889d: Waiting |
| 29-Sep-2019 18:02:31 | c56153825175: Waiting |
| 29-Sep-2019 18:02:31 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:02:31 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:02:32 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:02:32 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:02:32 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:02:32 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:02:32 | f1088d79c1bf: Pushed |
| 29-Sep-2019 18:02:32 | 3e6f8dfc13cb: Pushed |
| 29-Sep-2019 18:02:32 | c56153825175: Layer already exists |
| 29-Sep-2019 18:02:33 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:02:33 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:02:33 | 5f4ed6b379b0: Pushed |
| 29-Sep-2019 18:02:33 | 67e175d1e656: Pushed |
| 29-Sep-2019 18:02:36 | browndog_v0.2.0: digest: sha256:3c0e1e76d0a70a1ee147c5d1d31113e3c83ac51893f46c0e342a44fd5af55690 size: 3031 |
| 29-Sep-2019 18:02:36 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 29-Sep-2019 18:02:36 | 3e6f8dfc13cb: Preparing |
| 29-Sep-2019 18:02:36 | 67e175d1e656: Preparing |
| 29-Sep-2019 18:02:36 | 5f4ed6b379b0: Preparing |
| 29-Sep-2019 18:02:36 | f1088d79c1bf: Preparing |
| 29-Sep-2019 18:02:36 | 0cdb02ac1d86: Preparing |
| 29-Sep-2019 18:02:36 | f2297bdfc824: Preparing |
| 29-Sep-2019 18:02:36 | 0fbe2bcb1bf9: Preparing |
| 29-Sep-2019 18:02:36 | 59669fcdd5eb: Preparing |
| 29-Sep-2019 18:02:36 | 7f7a065d245a: Preparing |
| 29-Sep-2019 18:02:36 | f96e6b25195f: Preparing |
| 29-Sep-2019 18:02:36 | c56153825175: Preparing |
| 29-Sep-2019 18:02:36 | ae620432889d: Preparing |
| 29-Sep-2019 18:02:36 | a2022691bf95: Preparing |
| 29-Sep-2019 18:02:36 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:02:36 | ae620432889d: Waiting |
| 29-Sep-2019 18:02:36 | a2022691bf95: Waiting |
| 29-Sep-2019 18:02:36 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:02:36 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:02:36 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:02:36 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:02:36 | c56153825175: Waiting |
| 29-Sep-2019 18:02:36 | 3e6f8dfc13cb: Layer already exists |
| 29-Sep-2019 18:02:36 | 5f4ed6b379b0: Layer already exists |
| 29-Sep-2019 18:02:36 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:02:36 | f1088d79c1bf: Layer already exists |
| 29-Sep-2019 18:02:36 | 67e175d1e656: Layer already exists |
| 29-Sep-2019 18:02:37 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:02:37 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:02:37 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:02:37 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:02:37 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:02:37 | c56153825175: Layer already exists |
| 29-Sep-2019 18:02:37 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:02:37 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:02:37 | browndog_v0.3.0: digest: sha256:3c0e1e76d0a70a1ee147c5d1d31113e3c83ac51893f46c0e342a44fd5af55690 size: 3031 |
| 29-Sep-2019 18:02:37 | The push refers to repository [docker.io/clowder/extractors-msc-monitor] |
| 29-Sep-2019 18:02:37 | 3e6f8dfc13cb: Preparing |
| 29-Sep-2019 18:02:37 | 67e175d1e656: Preparing |
| 29-Sep-2019 18:02:37 | 5f4ed6b379b0: Preparing |
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| 29-Sep-2019 18:02:37 | 7f7a065d245a: Preparing |
| 29-Sep-2019 18:02:37 | f96e6b25195f: Preparing |
| 29-Sep-2019 18:02:37 | c56153825175: Preparing |
| 29-Sep-2019 18:02:37 | ae620432889d: Preparing |
| 29-Sep-2019 18:02:37 | a2022691bf95: Preparing |
| 29-Sep-2019 18:02:37 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:02:37 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:02:37 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:02:37 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:02:37 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:02:37 | c56153825175: Waiting |
| 29-Sep-2019 18:02:37 | ae620432889d: Waiting |
| 29-Sep-2019 18:02:37 | a2022691bf95: Waiting |
| 29-Sep-2019 18:02:38 | 5f4ed6b379b0: Layer already exists |
| 29-Sep-2019 18:02:38 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:02:38 | f1088d79c1bf: Layer already exists |
| 29-Sep-2019 18:02:38 | 67e175d1e656: Layer already exists |
| 29-Sep-2019 18:02:38 | 3e6f8dfc13cb: Layer already exists |
| 29-Sep-2019 18:02:38 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:02:38 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:02:38 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:02:38 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:02:38 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:02:38 | c56153825175: Layer already exists |
| 29-Sep-2019 18:02:38 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:02:38 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:02:39 | latest: digest: sha256:3c0e1e76d0a70a1ee147c5d1d31113e3c83ac51893f46c0e342a44fd5af55690 size: 3031 |
| 29-Sep-2019 18:02:39 | Untagged: 27272:latest |
| 29-Sep-2019 18:02:39 | Sending build context to Docker daemon 12.1MB |
| 29-Sep-2019 18:02:39 | |
| 29-Sep-2019 18:02:39 | Step 1/11 : FROM clowder/pyclowder:1 |
| 29-Sep-2019 18:02:39 | ---> d1a9e970ed30 |
| 29-Sep-2019 18:02:39 | Step 2/11 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 29-Sep-2019 18:02:39 | ---> Using cache |
| 29-Sep-2019 18:02:39 | ---> c791d09a3dfd |
| 29-Sep-2019 18:02:39 | Step 3/11 : ENV RABBITMQ_URI="" RABBITMQ_EXCHANGE="clowder" RABBITMQ_VHOST="%2F" RABBITMQ_QUEUE="ncsa.msc.PhenotypeExtractor" MONGO_URI="" DB_USERNAME="" DB_PASSWORD="" MAIN_SCRIPT="extractor-Phenotype.py" |
| 29-Sep-2019 18:02:39 | ---> Running in 77376e30e2b2 |
| 29-Sep-2019 18:02:40 | Removing intermediate container 77376e30e2b2 |
| 29-Sep-2019 18:02:40 | ---> 3d9ad7e22839 |
| 29-Sep-2019 18:02:40 | Step 4/11 : USER root |
| 29-Sep-2019 18:02:40 | ---> Running in 35d60ec94cf5 |
| 29-Sep-2019 18:02:40 | Removing intermediate container 35d60ec94cf5 |
| 29-Sep-2019 18:02:40 | ---> 98247586fb76 |
| 29-Sep-2019 18:02:40 | Step 5/11 : COPY requirements.txt /home/clowder/ |
| 29-Sep-2019 18:02:40 | ---> 4ae54092babc |
| 29-Sep-2019 18:02:40 | Step 6/11 : RUN pip install --upgrade pip |
| 29-Sep-2019 18:02:41 | ---> Running in 72d512fadee7 |
| 29-Sep-2019 18:02:42 | Collecting pip |
| 29-Sep-2019 18:02:42 | Downloading https://files.pythonhosted.org/packages/30/db/9e38760b32e3e7f40cce46dd5fb107b8c73840df38f0046d8e6514e675a1/pip-19.2.3-py2.py3-none-any.whl (1.4MB) |
| 29-Sep-2019 18:02:42 | Installing collected packages: pip |
| 29-Sep-2019 18:02:42 | Found existing installation: pip 8.1.1 |
| 29-Sep-2019 18:02:42 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 29-Sep-2019 18:02:43 | Successfully installed pip-19.2.3 |
| 29-Sep-2019 18:02:44 | Removing intermediate container 72d512fadee7 |
| 29-Sep-2019 18:02:44 | ---> 247d331f20fd |
| 29-Sep-2019 18:02:44 | Step 7/11 : RUN pip install -r /home/clowder/requirements.txt |
| 29-Sep-2019 18:02:44 | ---> Running in c3cef1d83b26 |
| 29-Sep-2019 18:02:46 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 29-Sep-2019 18:02:46 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) (1.2.1) |
| 29-Sep-2019 18:02:46 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 29-Sep-2019 18:02:46 | Downloading https://files.pythonhosted.org/packages/96/53/3782b6cc03500c0949a7ba9dba0c70da95d63d0ed4a04446123987ff983f/openpyxl-1.6.2.tar.gz (199kB) |
| 29-Sep-2019 18:02:46 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 29-Sep-2019 18:02:46 | Downloading https://files.pythonhosted.org/packages/2b/5b/4c5b6eafc63e0985b926267579a1e2534af70df0a45932f0c23fcc5f1b88/pika-0.9.14.tar.gz (72kB) |
| 29-Sep-2019 18:02:46 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 29-Sep-2019 18:02:47 | Downloading https://files.pythonhosted.org/packages/d7/94/9aa9ddd3e885caa307c0db8af5a1f5d266d3db44e1ae89bd4e14841ab8d0/pymongo-3.2.1.tar.gz (647kB) |
| 29-Sep-2019 18:02:47 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 29-Sep-2019 18:02:47 | Downloading https://files.pythonhosted.org/packages/e2/8d/af599c0388f46775c6b039d8b9c4acda2f6ef86787312a35291fff4cb7ca/pytz-2014.3.tar.bz2 (158kB) |
| 29-Sep-2019 18:02:48 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 29-Sep-2019 18:02:48 | Downloading https://files.pythonhosted.org/packages/7d/15/6efffc6aee666e1456852c2bf1d483b46bf971a2d509b35a98fc3eae1c60/requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 29-Sep-2019 18:02:48 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) (0.1.2) |
| 29-Sep-2019 18:02:48 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 29-Sep-2019 18:02:48 | Downloading https://files.pythonhosted.org/packages/b1/13/6fbcb55fef0b34c70cb3753741eaafc0e91553a1318653587a7d145caf15/xlrd-0.9.3.tar.gz (178kB) |
| 29-Sep-2019 18:02:48 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 29-Sep-2019 18:02:48 | Running setup.py install for openpyxl: started |
| 29-Sep-2019 18:02:49 | Running setup.py install for openpyxl: finished with status 'done' |
| 29-Sep-2019 18:02:49 | Found existing installation: pika 0.11.0 |
| 29-Sep-2019 18:02:49 | Uninstalling pika-0.11.0: |
| 29-Sep-2019 18:02:49 | Successfully uninstalled pika-0.11.0 |
| 29-Sep-2019 18:02:49 | Running setup.py install for pika: started |
| 29-Sep-2019 18:02:49 | Running setup.py install for pika: finished with status 'done' |
| 29-Sep-2019 18:02:49 | Running setup.py install for pymongo: started |
| 29-Sep-2019 18:02:49 | Running setup.py install for pymongo: finished with status 'done' |
| 29-Sep-2019 18:02:49 | Running setup.py install for pytz: started |
| 29-Sep-2019 18:02:50 | Running setup.py install for pytz: finished with status 'done' |
| 29-Sep-2019 18:02:50 | Found existing installation: requests 2.18.4 |
| 29-Sep-2019 18:02:50 | Uninstalling requests-2.18.4: |
| 29-Sep-2019 18:02:50 | Successfully uninstalled requests-2.18.4 |
| 29-Sep-2019 18:02:50 | Running setup.py install for xlrd: started |
| 29-Sep-2019 18:02:50 | Running setup.py install for xlrd: finished with status 'done' |
| 29-Sep-2019 18:02:50 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 29-Sep-2019 18:02:52 | Removing intermediate container c3cef1d83b26 |
| 29-Sep-2019 18:02:52 | ---> c1503f682c03 |
| 29-Sep-2019 18:02:52 | Step 8/11 : USER clowder |
| 29-Sep-2019 18:02:52 | ---> Running in 7ba6d472f71c |
| 29-Sep-2019 18:02:53 | Removing intermediate container 7ba6d472f71c |
| 29-Sep-2019 18:02:53 | ---> eb6403327de2 |
| 29-Sep-2019 18:02:53 | Step 9/11 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 29-Sep-2019 18:02:54 | ---> 493a3b727952 |
| 29-Sep-2019 18:02:54 | Step 10/11 : ENTRYPOINT ["/home/clowder/entrypoint.sh"] |
| 29-Sep-2019 18:02:54 | ---> Running in 0a604db45f52 |
| 29-Sep-2019 18:02:54 | Removing intermediate container 0a604db45f52 |
| 29-Sep-2019 18:02:54 | ---> e7b9d4aefa90 |
| 29-Sep-2019 18:02:54 | Step 11/11 : CMD ["extractor"] |
| 29-Sep-2019 18:02:54 | ---> Running in 61537a107d43 |
| 29-Sep-2019 18:02:54 | Removing intermediate container 61537a107d43 |
| 29-Sep-2019 18:02:54 | ---> a8ec19d929d7 |
| 29-Sep-2019 18:02:54 | Successfully built a8ec19d929d7 |
| 29-Sep-2019 18:02:54 | Successfully tagged 27272:latest |
| 29-Sep-2019 18:02:55 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 29-Sep-2019 18:02:55 | 80821ca1b25b: Preparing |
| 29-Sep-2019 18:02:55 | 7aec1f4fbec8: Preparing |
| 29-Sep-2019 18:02:55 | 500e82b627ec: Preparing |
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| 29-Sep-2019 18:02:55 | a2022691bf95: Preparing |
| 29-Sep-2019 18:02:55 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:02:55 | 0fbe2bcb1bf9: Waiting |
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| 29-Sep-2019 18:02:55 | c56153825175: Waiting |
| 29-Sep-2019 18:02:55 | ae620432889d: Waiting |
| 29-Sep-2019 18:02:55 | a2022691bf95: Waiting |
| 29-Sep-2019 18:02:55 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:02:55 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:02:56 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:02:56 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:02:56 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:02:56 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:02:56 | 9e568a2ff5fb: Pushed |
| 29-Sep-2019 18:02:56 | 80821ca1b25b: Pushed |
| 29-Sep-2019 18:02:56 | c56153825175: Layer already exists |
| 29-Sep-2019 18:02:57 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:02:57 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:02:57 | 500e82b627ec: Pushed |
| 29-Sep-2019 18:02:57 | 7aec1f4fbec8: Pushed |
| 29-Sep-2019 18:02:59 | browndog_v0.2.0: digest: sha256:6b4f6585b26e442ad548f77d3cfb482c9424de1fa49ddbe303b11cb437516a7f size: 3031 |
| 29-Sep-2019 18:03:00 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 29-Sep-2019 18:03:00 | 80821ca1b25b: Preparing |
| 29-Sep-2019 18:03:00 | 7aec1f4fbec8: Preparing |
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| 29-Sep-2019 18:03:00 | a2022691bf95: Preparing |
| 29-Sep-2019 18:03:00 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:03:00 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:03:00 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:03:00 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:03:00 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:03:00 | ae620432889d: Waiting |
| 29-Sep-2019 18:03:00 | a2022691bf95: Waiting |
| 29-Sep-2019 18:03:00 | 500e82b627ec: Layer already exists |
| 29-Sep-2019 18:03:00 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:03:00 | 80821ca1b25b: Layer already exists |
| 29-Sep-2019 18:03:00 | 7aec1f4fbec8: Layer already exists |
| 29-Sep-2019 18:03:00 | 9e568a2ff5fb: Layer already exists |
| 29-Sep-2019 18:03:00 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:03:00 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:03:00 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:03:00 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:03:00 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:03:01 | c56153825175: Layer already exists |
| 29-Sep-2019 18:03:01 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:03:01 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:03:01 | browndog_v0.3.0: digest: sha256:6b4f6585b26e442ad548f77d3cfb482c9424de1fa49ddbe303b11cb437516a7f size: 3031 |
| 29-Sep-2019 18:03:01 | The push refers to repository [docker.io/clowder/extractors-msc-phenotype] |
| 29-Sep-2019 18:03:01 | 80821ca1b25b: Preparing |
| 29-Sep-2019 18:03:01 | 7aec1f4fbec8: Preparing |
| 29-Sep-2019 18:03:01 | 500e82b627ec: Preparing |
| 29-Sep-2019 18:03:01 | 9e568a2ff5fb: Preparing |
| 29-Sep-2019 18:03:01 | 0cdb02ac1d86: Preparing |
| 29-Sep-2019 18:03:01 | f2297bdfc824: Preparing |
| 29-Sep-2019 18:03:01 | 0fbe2bcb1bf9: Preparing |
| 29-Sep-2019 18:03:01 | 59669fcdd5eb: Preparing |
| 29-Sep-2019 18:03:01 | 7f7a065d245a: Preparing |
| 29-Sep-2019 18:03:01 | f96e6b25195f: Preparing |
| 29-Sep-2019 18:03:01 | c56153825175: Preparing |
| 29-Sep-2019 18:03:01 | ae620432889d: Preparing |
| 29-Sep-2019 18:03:01 | a2022691bf95: Preparing |
| 29-Sep-2019 18:03:01 | 7f7a065d245a: Waiting |
| 29-Sep-2019 18:03:01 | f96e6b25195f: Waiting |
| 29-Sep-2019 18:03:01 | c56153825175: Waiting |
| 29-Sep-2019 18:03:01 | ae620432889d: Waiting |
| 29-Sep-2019 18:03:01 | a2022691bf95: Waiting |
| 29-Sep-2019 18:03:01 | 0fbe2bcb1bf9: Waiting |
| 29-Sep-2019 18:03:01 | f2297bdfc824: Waiting |
| 29-Sep-2019 18:03:01 | 59669fcdd5eb: Waiting |
| 29-Sep-2019 18:03:02 | 500e82b627ec: Layer already exists |
| 29-Sep-2019 18:03:02 | 0cdb02ac1d86: Layer already exists |
| 29-Sep-2019 18:03:02 | 7aec1f4fbec8: Layer already exists |
| 29-Sep-2019 18:03:02 | 80821ca1b25b: Layer already exists |
| 29-Sep-2019 18:03:02 | 9e568a2ff5fb: Layer already exists |
| 29-Sep-2019 18:03:02 | f2297bdfc824: Layer already exists |
| 29-Sep-2019 18:03:02 | 59669fcdd5eb: Layer already exists |
| 29-Sep-2019 18:03:02 | f96e6b25195f: Layer already exists |
| 29-Sep-2019 18:03:02 | 7f7a065d245a: Layer already exists |
| 29-Sep-2019 18:03:02 | 0fbe2bcb1bf9: Layer already exists |
| 29-Sep-2019 18:03:02 | a2022691bf95: Layer already exists |
| 29-Sep-2019 18:03:02 | ae620432889d: Layer already exists |
| 29-Sep-2019 18:03:02 | c56153825175: Layer already exists |
| 29-Sep-2019 18:03:03 | latest: digest: sha256:6b4f6585b26e442ad548f77d3cfb482c9424de1fa49ddbe303b11cb437516a7f size: 3031 |
| 29-Sep-2019 18:03:03 | Untagged: 27272:latest |
| 29-Sep-2019 18:03:03 | Finished task 'docker build' with result: Success |
| 29-Sep-2019 18:03:03 | Running post build plugin 'Docker Container Cleanup' |
| 29-Sep-2019 18:03:03 | Running post build plugin 'NCover Results Collector' |
| 29-Sep-2019 18:03:03 | Running post build plugin 'Clover Results Collector' |
| 29-Sep-2019 18:03:03 | Running post build plugin 'npm Cache Cleanup' |
| 29-Sep-2019 18:03:03 | Running post build plugin 'Artifact Copier' |
| 29-Sep-2019 18:03:03 | Finalising the build... |
| 29-Sep-2019 18:03:03 | Stopping timer. |
| 29-Sep-2019 18:03:03 | Build CATS-MSC-JOB1-41 completed. |
| 29-Sep-2019 18:03:03 | Running on server: post build plugin 'NCover Results Collector' |
| 29-Sep-2019 18:03:03 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 29-Sep-2019 18:03:03 | Running on server: post build plugin 'Clover Delta Calculator' |
| 29-Sep-2019 18:03:03 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 29-Sep-2019 18:03:03 | All post build plugins have finished |
| 29-Sep-2019 18:03:03 | Generating build results summary... |
| 29-Sep-2019 18:03:03 | Saving build results to disk... |
| 29-Sep-2019 18:03:03 | Logging substituted variables... |
| 29-Sep-2019 18:03:03 | Indexing build results... |
| 29-Sep-2019 18:03:03 | Finished building CATS-MSC-JOB1-41. |