Build: #2 was successful
Job: Default Job was successful
Build log
The build generated 904 lines of output. Download or view full build log.
| 03-Feb-2017 16:21:43 | Build Clowder - extractors-msc - master - Default Job #2 (CATS-MSC1-JOB1-2) started building on agent buildserver-1.ncsa.illinois.edu |
| 03-Feb-2017 16:21:43 | Remote Agent |
| 03-Feb-2017 16:21:43 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1 |
| 03-Feb-2017 16:21:43 | Executing build Clowder - extractors-msc - master - Default Job #2 (CATS-MSC1-JOB1-2) |
| 03-Feb-2017 16:21:43 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 03-Feb-2017 16:21:43 | Updating source code to revision: 85e47c135cd2d896597c8dd58362bfc12d4463d0 |
| 03-Feb-2017 16:21:43 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1/.git'. |
| 03-Feb-2017 16:21:43 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1/.git/ |
| 03-Feb-2017 16:21:44 | Fetching 'refs/heads/master' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git'. Will try to do a shallow fetch. |
| 03-Feb-2017 16:21:44 | Warning: Permanently added '[127.0.0.1]:50740' (RSA) to the list of known hosts. |
| 03-Feb-2017 16:21:46 | From ssh://127.0.0.1:50740/cats/extractors-msc |
| 03-Feb-2017 16:21:46 | * [new branch] master -> master |
| 03-Feb-2017 16:21:46 | Checking out revision 85e47c135cd2d896597c8dd58362bfc12d4463d0. |
| 03-Feb-2017 16:21:47 | Already on 'master' |
| 03-Feb-2017 16:21:47 | Updated source code to revision: 85e47c135cd2d896597c8dd58362bfc12d4463d0 |
| 03-Feb-2017 16:21:47 | Finished task 'Checkout Default Repository' with result: Success |
| 03-Feb-2017 16:21:47 | Running pre-build action: VCS Version Collector |
| 03-Feb-2017 16:21:47 | Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 03-Feb-2017 16:21:47 | Beginning to execute external process for build 'Clowder - extractors-msc - master - Default Job #2 (CATS-MSC1-JOB1-2)' ... running command line: /bin/sh docker.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=master bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_repository_revision_number=85e47c135cd2d896597c8dd58362bfc12d4463d0 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC1-JOB1-2 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_planRepository_1_name=extractors-msc bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1 bamboo_buildKey=CATS-MSC1-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=master bamboo_repository_127172629_branch_name=master bamboo_planRepository_name=extractors-msc bamboo_buildNumber=2 bamboo_capability_system_builder_nodejs_Node_js_v6_9_1=/home/bamboo/node-v6.9.1 bamboo_capability_system_builder_nodejs_Node_js_v0_10_28=/home/bamboo/node-v0.10.28 bamboo_repository_127172629_git_username= bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-MSC1-JOB1-2 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_agentId=108560385 bamboo_planName=Clowder - extractors-msc - master bamboo_shortPlanKey=MSC1 bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_repository_127172629_git_branch=master bamboo_shortJobKey=JOB1 bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_repository_127172629_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_repository_127172629_name=extractors-msc bamboo_planRepository_revision=85e47c135cd2d896597c8dd58362bfc12d4463d0 bamboo_repository_previous_revision_number=fcb4e1a54dea0bccc7c1e15742a71aeb43a25c5c bamboo_buildTimeStamp=2017-02-03T16:20:04.396-06:00 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_planRepository_previousRevision=fcb4e1a54dea0bccc7c1e15742a71aeb43a25c5c bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_buildResultKey=CATS-MSC1-JOB1-2 bamboo_repository_git_branch=master bamboo_repository_branch_name=master bamboo_buildPlanName=Clowder - extractors-msc - master - Default Job bamboo_planRepository_1_revision=85e47c135cd2d896597c8dd58362bfc12d4463d0 bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=extractors-msc bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=master bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_planRepository_1_previousRevision=fcb4e1a54dea0bccc7c1e15742a71aeb43a25c5c bamboo_repository_git_username= bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=stash-rep bamboo_planRepository_branchName=master bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_repository_127172629_previous_revision_number=fcb4e1a54dea0bccc7c1e15742a71aeb43a25c5c bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_planRepository_type=stash-rep bamboo_planRepository_1_username= bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-MSC1-JOB1 bamboo_planKey=CATS-MSC1 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/extractors-msc.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=master bamboo_repository_127172629_revision_number=85e47c135cd2d896597c8dd58362bfc12d4463d0 |
| 03-Feb-2017 16:21:47 | Sending build context to Docker daemon 557.1 kB |
| 03-Feb-2017 16:21:47 | Sending build context to Docker daemon 1.114 MB |
| 03-Feb-2017 16:21:47 | Sending build context to Docker daemon 1.671 MB |
| 03-Feb-2017 16:21:47 | Sending build context to Docker daemon 2.228 MB |
| 03-Feb-2017 16:21:47 | Sending build context to Docker daemon 2.284 MB |
| 03-Feb-2017 16:21:47 | |
| 03-Feb-2017 16:21:47 | Step 1 : FROM clowder/pyclowder:1 |
| 03-Feb-2017 16:21:47 | ---> 2dd17798784b |
| 03-Feb-2017 16:21:47 | Step 2 : MAINTAINER Rob Kooper <kooper@illinois.edu> |
| 03-Feb-2017 16:21:47 | ---> Using cache |
| 03-Feb-2017 16:21:47 | ---> 07579dbf21e8 |
| 03-Feb-2017 16:21:47 | Step 3 : VOLUME /matlab |
| 03-Feb-2017 16:21:47 | ---> Using cache |
| 03-Feb-2017 16:21:47 | ---> fbba1206c292 |
| 03-Feb-2017 16:21:47 | Step 4 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.diagnosis" MATLAB_BINARY "/matlab/bin/matlab" MAIN_SCRIPT "diagnosis.py" |
| 03-Feb-2017 16:21:47 | ---> Running in e200017be798 |
| 03-Feb-2017 16:21:47 | ---> c22d618a5453 |
| 03-Feb-2017 16:21:47 | Removing intermediate container e200017be798 |
| 03-Feb-2017 16:21:47 | Step 5 : USER root |
| 03-Feb-2017 16:21:47 | ---> Running in 02e69047d47f |
| 03-Feb-2017 16:21:47 | ---> 801367e9bc50 |
| 03-Feb-2017 16:21:47 | Removing intermediate container 02e69047d47f |
| 03-Feb-2017 16:21:47 | Step 6 : RUN pip install --upgrade pip |
| 03-Feb-2017 16:21:47 | ---> Running in 30e91f46aff7 |
| 03-Feb-2017 16:21:50 | Collecting pip |
| 03-Feb-2017 16:21:51 | Downloading pip-9.0.1-py2.py3-none-any.whl (1.3MB) |
| 03-Feb-2017 16:21:51 | Installing collected packages: pip |
| 03-Feb-2017 16:21:51 | Found existing installation: pip 8.1.1 |
| 03-Feb-2017 16:21:51 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 03-Feb-2017 16:21:53 | Successfully installed pip-9.0.1 |
| 03-Feb-2017 16:21:53 | ---> 26a2f7e6e919 |
| 03-Feb-2017 16:21:54 | Removing intermediate container 30e91f46aff7 |
| 03-Feb-2017 16:21:54 | Step 7 : RUN apt-get -qq -y update && apt-get -y install libxext6 libxmu6 libxt6 wget && mkdir -p /matlab && rm -rf /var/lib/apt/lists/* |
| 03-Feb-2017 16:21:54 | ---> Running in af2cd25d3d90 |
| 03-Feb-2017 16:22:02 | Reading package lists... |
| 03-Feb-2017 16:22:02 | Building dependency tree... |
| 03-Feb-2017 16:22:02 | Reading state information... |
| 03-Feb-2017 16:22:03 | The following additional packages will be installed: |
| 03-Feb-2017 16:22:03 | libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 |
| 03-Feb-2017 16:22:03 | x11-common |
| 03-Feb-2017 16:22:03 | The following NEW packages will be installed: |
| 03-Feb-2017 16:22:03 | libice6 libidn11 libsm6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 |
| 03-Feb-2017 16:22:03 | libxext6 libxmu6 libxt6 wget x11-common |
| 03-Feb-2017 16:22:03 | 0 upgraded, 13 newly installed, 0 to remove and 6 not upgraded. |
| 03-Feb-2017 16:22:03 | Need to get 1401 kB of archives. |
| 03-Feb-2017 16:22:03 | After this operation, 5592 kB of additional disk space will be used. |
| 03-Feb-2017 16:22:03 | Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] |
| 03-Feb-2017 16:22:03 | Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] |
| 03-Feb-2017 16:22:03 | Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] |
| 03-Feb-2017 16:22:03 | Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] |
| 03-Feb-2017 16:22:03 | Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] |
| 03-Feb-2017 16:22:04 | Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] |
| 03-Feb-2017 16:22:04 | Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB] |
| 03-Feb-2017 16:22:04 | Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] |
| 03-Feb-2017 16:22:04 | Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] |
| 03-Feb-2017 16:22:04 | Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.1 [45.6 kB] |
| 03-Feb-2017 16:22:04 | Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wget amd64 1.17.1-1ubuntu1.1 [298 kB] |
| 03-Feb-2017 16:22:04 | Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] |
| 03-Feb-2017 16:22:04 | Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB] |
| 03-Feb-2017 16:22:04 | debconf: delaying package configuration, since apt-utils is not installed |
| 03-Feb-2017 16:22:04 | Fetched 1401 kB in 1s (1197 kB/s) |
| 03-Feb-2017 16:22:04 | Selecting previously unselected package libxau6:amd64. |
| 03-Feb-2017 16:22:04 | (Reading database ... |
| 03-Feb-2017 16:22:04 | (Reading database ... 5% |
| 03-Feb-2017 16:22:04 | (Reading database ... 10% |
| 03-Feb-2017 16:22:04 | (Reading database ... 15% |
| 03-Feb-2017 16:22:04 | (Reading database ... 20% |
| 03-Feb-2017 16:22:04 | (Reading database ... 25% |
| 03-Feb-2017 16:22:04 | (Reading database ... 30% |
| 03-Feb-2017 16:22:04 | (Reading database ... 35% |
| 03-Feb-2017 16:22:04 | (Reading database ... 40% |
| 03-Feb-2017 16:22:04 | (Reading database ... 45% |
| 03-Feb-2017 16:22:04 | (Reading database ... 50% |
| 03-Feb-2017 16:22:04 | (Reading database ... 55% |
| 03-Feb-2017 16:22:04 | (Reading database ... 60% |
| 03-Feb-2017 16:22:04 | (Reading database ... 65% |
| 03-Feb-2017 16:22:04 | (Reading database ... 70% |
| 03-Feb-2017 16:22:04 | (Reading database ... 75% |
| 03-Feb-2017 16:22:04 | (Reading database ... 80% |
| 03-Feb-2017 16:22:04 | (Reading database ... 85% |
| 03-Feb-2017 16:22:04 | (Reading database ... 90% |
| 03-Feb-2017 16:22:04 | (Reading database ... 95% |
| 03-Feb-2017 16:22:04 | (Reading database ... 100% |
| 03-Feb-2017 16:22:04 | (Reading database ... 8589 files and directories currently installed.) |
| 03-Feb-2017 16:22:04 | Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... |
| 03-Feb-2017 16:22:04 | Unpacking libxau6:amd64 (1:1.0.8-1) ... |
| 03-Feb-2017 16:22:04 | Selecting previously unselected package libxdmcp6:amd64. |
| 03-Feb-2017 16:22:04 | Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... |
| 03-Feb-2017 16:22:04 | Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 03-Feb-2017 16:22:04 | Selecting previously unselected package libxcb1:amd64. |
| 03-Feb-2017 16:22:04 | Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... |
| 03-Feb-2017 16:22:04 | Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 03-Feb-2017 16:22:04 | Selecting previously unselected package libx11-data. |
| 03-Feb-2017 16:22:04 | Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2_all.deb ... |
| 03-Feb-2017 16:22:04 | Unpacking libx11-data (2:1.6.3-1ubuntu2) ... |
| 03-Feb-2017 16:22:05 | Selecting previously unselected package libx11-6:amd64. |
| 03-Feb-2017 16:22:05 | Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2_amd64.deb ... |
| 03-Feb-2017 16:22:05 | Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2) ... |
| 03-Feb-2017 16:22:05 | Selecting previously unselected package libxext6:amd64. |
| 03-Feb-2017 16:22:05 | Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ... |
| 03-Feb-2017 16:22:05 | Unpacking libxext6:amd64 (2:1.3.3-1) ... |
| 03-Feb-2017 16:22:05 | Selecting previously unselected package x11-common. |
| 03-Feb-2017 16:22:05 | Preparing to unpack .../x11-common_1%3a7.7+13ubuntu3_all.deb ... |
| 03-Feb-2017 16:22:05 | Unpacking x11-common (1:7.7+13ubuntu3) ... |
| 03-Feb-2017 16:22:05 | Selecting previously unselected package libice6:amd64. |
| 03-Feb-2017 16:22:05 | Preparing to unpack .../libice6_2%3a1.0.9-1_amd64.deb ... |
| 03-Feb-2017 16:22:05 | Unpacking libice6:amd64 (2:1.0.9-1) ... |
| 03-Feb-2017 16:22:05 | Selecting previously unselected package libsm6:amd64. |
| 03-Feb-2017 16:22:05 | Preparing to unpack .../libsm6_2%3a1.2.2-1_amd64.deb ... |
| 03-Feb-2017 16:22:05 | Unpacking libsm6:amd64 (2:1.2.2-1) ... |
| 03-Feb-2017 16:22:05 | Selecting previously unselected package libidn11:amd64. |
| 03-Feb-2017 16:22:05 | Preparing to unpack .../libidn11_1.32-3ubuntu1.1_amd64.deb ... |
| 03-Feb-2017 16:22:05 | Unpacking libidn11:amd64 (1.32-3ubuntu1.1) ... |
| 03-Feb-2017 16:22:05 | Selecting previously unselected package wget. |
| 03-Feb-2017 16:22:05 | Preparing to unpack .../wget_1.17.1-1ubuntu1.1_amd64.deb ... |
| 03-Feb-2017 16:22:05 | Unpacking wget (1.17.1-1ubuntu1.1) ... |
| 03-Feb-2017 16:22:05 | Selecting previously unselected package libxt6:amd64. |
| 03-Feb-2017 16:22:05 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 03-Feb-2017 16:22:05 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 03-Feb-2017 16:22:05 | Selecting previously unselected package libxmu6:amd64. |
| 03-Feb-2017 16:22:05 | Preparing to unpack .../libxmu6_2%3a1.1.2-2_amd64.deb ... |
| 03-Feb-2017 16:22:05 | Unpacking libxmu6:amd64 (2:1.1.2-2) ... |
| 03-Feb-2017 16:22:05 | Processing triggers for libc-bin (2.23-0ubuntu5) ... |
| 03-Feb-2017 16:22:05 | Processing triggers for systemd (229-4ubuntu13) ... |
| 03-Feb-2017 16:22:05 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 03-Feb-2017 16:22:05 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 03-Feb-2017 16:22:05 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 03-Feb-2017 16:22:05 | Setting up libx11-data (2:1.6.3-1ubuntu2) ... |
| 03-Feb-2017 16:22:05 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ... |
| 03-Feb-2017 16:22:05 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 03-Feb-2017 16:22:05 | Setting up x11-common (1:7.7+13ubuntu3) ... |
| 03-Feb-2017 16:22:06 | debconf: unable to initialize frontend: Dialog |
| 03-Feb-2017 16:22:06 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 03-Feb-2017 16:22:06 | debconf: falling back to frontend: Readline |
| 03-Feb-2017 16:22:06 | debconf: unable to initialize frontend: Readline |
| 03-Feb-2017 16:22:06 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
| 03-Feb-2017 16:22:06 | debconf: falling back to frontend: Teletype |
| 03-Feb-2017 16:22:06 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 03-Feb-2017 16:22:06 | invoke-rc.d: could not determine current runlevel |
| 03-Feb-2017 16:22:06 | invoke-rc.d: policy-rc.d denied execution of start. |
| 03-Feb-2017 16:22:06 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 03-Feb-2017 16:22:06 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 03-Feb-2017 16:22:06 | Setting up libidn11:amd64 (1.32-3ubuntu1.1) ... |
| 03-Feb-2017 16:22:06 | Setting up wget (1.17.1-1ubuntu1.1) ... |
| 03-Feb-2017 16:22:06 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 03-Feb-2017 16:22:06 | Setting up libxmu6:amd64 (2:1.1.2-2) ... |
| 03-Feb-2017 16:22:06 | Processing triggers for libc-bin (2.23-0ubuntu5) ... |
| 03-Feb-2017 16:22:06 | Processing triggers for systemd (229-4ubuntu13) ... |
| 03-Feb-2017 16:22:07 | ---> 55c8f1043ff6 |
| 03-Feb-2017 16:22:07 | Removing intermediate container af2cd25d3d90 |
| 03-Feb-2017 16:22:07 | Step 8 : USER clowder |
| 03-Feb-2017 16:22:07 | ---> Running in 175fea624bf8 |
| 03-Feb-2017 16:22:07 | ---> 6fbeea08ecf9 |
| 03-Feb-2017 16:22:07 | Removing intermediate container 175fea624bf8 |
| 03-Feb-2017 16:22:07 | Step 9 : COPY entrypoint.sh *.py *.m data/*.mat *.json /home/clowder/ |
| 03-Feb-2017 16:22:09 | ---> ca3bdb6ce592 |
| 03-Feb-2017 16:22:09 | Removing intermediate container 453c9ce6ee83 |
| 03-Feb-2017 16:22:09 | Step 10 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 03-Feb-2017 16:22:09 | ---> Running in 49e09f1f0094 |
| 03-Feb-2017 16:22:09 | ---> cdac4e026568 |
| 03-Feb-2017 16:22:09 | Removing intermediate container 49e09f1f0094 |
| 03-Feb-2017 16:22:09 | Step 11 : CMD extractor |
| 03-Feb-2017 16:22:09 | ---> Running in 6f54210164d3 |
| 03-Feb-2017 16:22:09 | ---> 7cc2f1ad0e35 |
| 03-Feb-2017 16:22:09 | Removing intermediate container 6f54210164d3 |
| 03-Feb-2017 16:22:09 | Successfully built 7cc2f1ad0e35 |
| 03-Feb-2017 16:22:09 | The push refers to a repository [docker.io/clowder/extractors-msc-kidney] |
| 03-Feb-2017 16:22:09 | 8a808f219b40: Preparing |
| 03-Feb-2017 16:22:09 | 7495ec0c9cb3: Preparing |
| 03-Feb-2017 16:22:09 | f8b0aab61870: Preparing |
| 03-Feb-2017 16:22:09 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:22:09 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:22:09 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:22:09 | e24a372680fc: Preparing |
| 03-Feb-2017 16:22:09 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:22:09 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:22:09 | af605e724c5a: Preparing |
| 03-Feb-2017 16:22:09 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:22:09 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:22:09 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:22:09 | e24a372680fc: Waiting |
| 03-Feb-2017 16:22:09 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:22:09 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:22:09 | af605e724c5a: Waiting |
| 03-Feb-2017 16:22:09 | 59f161c3069d: Waiting |
| 03-Feb-2017 16:22:09 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:22:11 | 7d760664bbad: Mounted from clowder/extractors-river |
| 03-Feb-2017 16:22:11 | a2688f6622a7: Mounted from clowder/extractors-river |
| 03-Feb-2017 16:22:11 | 5e269aa11a2f: Mounted from clowder/extractors-river |
| 03-Feb-2017 16:22:12 | e24a372680fc: Mounted from clowder/extractors-river |
| 03-Feb-2017 16:22:12 | 8a808f219b40: Pushed |
| 03-Feb-2017 16:22:12 | 5eb5bd4c5014: Mounted from clowder/extractors-river |
| 03-Feb-2017 16:22:12 | d195a7a18c70: Mounted from clowder/extractors-river |
| 03-Feb-2017 16:22:12 | af605e724c5a: Mounted from clowder/extractors-river |
| 03-Feb-2017 16:22:12 | 59f161c3069d: Mounted from clowder/extractors-river |
| 03-Feb-2017 16:22:12 | 4f03495a4d7d: Mounted from clowder/extractors-river |
| 03-Feb-2017 16:22:13 | f8b0aab61870: Pushed |
| 03-Feb-2017 16:22:13 | 7495ec0c9cb3: Pushed |
| 03-Feb-2017 16:22:16 | master: digest: sha256:40a1059439c3b71a11cae3a63d854209dcf5bf1efe9e66f164d8e77d30258e6f size: 2826 |
| 03-Feb-2017 16:22:16 | The push refers to a repository [docker.io/clowder/extractors-msc-kidney] |
| 03-Feb-2017 16:22:16 | 8a808f219b40: Preparing |
| 03-Feb-2017 16:22:16 | 7495ec0c9cb3: Preparing |
| 03-Feb-2017 16:22:16 | f8b0aab61870: Preparing |
| 03-Feb-2017 16:22:16 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:22:16 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:22:16 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:22:16 | e24a372680fc: Preparing |
| 03-Feb-2017 16:22:16 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:22:16 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:22:16 | af605e724c5a: Preparing |
| 03-Feb-2017 16:22:16 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:22:16 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:22:16 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:22:16 | e24a372680fc: Waiting |
| 03-Feb-2017 16:22:16 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:22:16 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:22:16 | af605e724c5a: Waiting |
| 03-Feb-2017 16:22:16 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:22:16 | 8a808f219b40: Layer already exists |
| 03-Feb-2017 16:22:16 | 5e269aa11a2f: Layer already exists |
| 03-Feb-2017 16:22:16 | 7495ec0c9cb3: Layer already exists |
| 03-Feb-2017 16:22:16 | f8b0aab61870: Layer already exists |
| 03-Feb-2017 16:22:16 | 7d760664bbad: Layer already exists |
| 03-Feb-2017 16:22:16 | a2688f6622a7: Layer already exists |
| 03-Feb-2017 16:22:16 | e24a372680fc: Layer already exists |
| 03-Feb-2017 16:22:16 | 5eb5bd4c5014: Layer already exists |
| 03-Feb-2017 16:22:16 | af605e724c5a: Layer already exists |
| 03-Feb-2017 16:22:16 | d195a7a18c70: Layer already exists |
| 03-Feb-2017 16:22:17 | 4f03495a4d7d: Layer already exists |
| 03-Feb-2017 16:22:17 | 59f161c3069d: Layer already exists |
| 03-Feb-2017 16:22:17 | latest: digest: sha256:40a1059439c3b71a11cae3a63d854209dcf5bf1efe9e66f164d8e77d30258e6f size: 2826 |
| 03-Feb-2017 16:22:17 | Untagged: 23804:latest |
| 03-Feb-2017 16:22:17 | Sending build context to Docker daemon 67.07 kB |
| 03-Feb-2017 16:22:17 | |
| 03-Feb-2017 16:22:17 | Step 1 : FROM clowder/pyclowder:1 |
| 03-Feb-2017 16:22:17 | ---> 2dd17798784b |
| 03-Feb-2017 16:22:17 | Step 2 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 03-Feb-2017 16:22:17 | ---> Running in 27d7df551b94 |
| 03-Feb-2017 16:22:17 | ---> 2c58a262fb36 |
| 03-Feb-2017 16:22:17 | Removing intermediate container 27d7df551b94 |
| 03-Feb-2017 16:22:17 | Step 3 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.IsletExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Islet.py" |
| 03-Feb-2017 16:22:17 | ---> Running in cd32127a3280 |
| 03-Feb-2017 16:22:17 | ---> 6911c7601ef2 |
| 03-Feb-2017 16:22:17 | Removing intermediate container cd32127a3280 |
| 03-Feb-2017 16:22:17 | Step 4 : USER root |
| 03-Feb-2017 16:22:18 | ---> Running in b281f139c46a |
| 03-Feb-2017 16:22:18 | ---> 53b8142f6241 |
| 03-Feb-2017 16:22:18 | Removing intermediate container b281f139c46a |
| 03-Feb-2017 16:22:18 | Step 5 : COPY requirements.txt /home/clowder/ |
| 03-Feb-2017 16:22:18 | ---> 4998e1378f2c |
| 03-Feb-2017 16:22:18 | Removing intermediate container 1f5e38571ec2 |
| 03-Feb-2017 16:22:18 | Step 6 : RUN pip install --upgrade pip |
| 03-Feb-2017 16:22:18 | ---> Running in c0623c0b7ed3 |
| 03-Feb-2017 16:22:20 | Collecting pip |
| 03-Feb-2017 16:22:20 | Downloading pip-9.0.1-py2.py3-none-any.whl (1.3MB) |
| 03-Feb-2017 16:22:21 | Installing collected packages: pip |
| 03-Feb-2017 16:22:21 | Found existing installation: pip 8.1.1 |
| 03-Feb-2017 16:22:21 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 03-Feb-2017 16:22:22 | Successfully installed pip-9.0.1 |
| 03-Feb-2017 16:22:23 | ---> 8f7fa9e616ea |
| 03-Feb-2017 16:22:23 | Removing intermediate container c0623c0b7ed3 |
| 03-Feb-2017 16:22:23 | Step 7 : RUN pip install -r /home/clowder/requirements.txt |
| 03-Feb-2017 16:22:23 | ---> Running in a3b87e351eb5 |
| 03-Feb-2017 16:22:24 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) |
| 03-Feb-2017 16:22:24 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 03-Feb-2017 16:22:24 | Downloading openpyxl-1.6.2.tar.gz (199kB) |
| 03-Feb-2017 16:22:27 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 03-Feb-2017 16:22:27 | Downloading pika-0.9.14.tar.gz (72kB) |
| 03-Feb-2017 16:22:28 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 03-Feb-2017 16:22:28 | Downloading pymongo-3.2.1.tar.gz (647kB) |
| 03-Feb-2017 16:22:29 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 03-Feb-2017 16:22:30 | Downloading pytz-2014.3.zip (482kB) |
| 03-Feb-2017 16:22:31 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 03-Feb-2017 16:22:31 | Downloading requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 03-Feb-2017 16:22:31 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) |
| 03-Feb-2017 16:22:31 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 03-Feb-2017 16:22:31 | Downloading xlrd-0.9.3.tar.gz (178kB) |
| 03-Feb-2017 16:22:32 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 03-Feb-2017 16:22:32 | Running setup.py install for openpyxl: started |
| 03-Feb-2017 16:22:33 | Running setup.py install for openpyxl: finished with status 'done' |
| 03-Feb-2017 16:22:33 | Found existing installation: pika 0.10.0 |
| 03-Feb-2017 16:22:33 | Uninstalling pika-0.10.0: |
| 03-Feb-2017 16:22:33 | Successfully uninstalled pika-0.10.0 |
| 03-Feb-2017 16:22:33 | Running setup.py install for pika: started |
| 03-Feb-2017 16:22:34 | Running setup.py install for pika: finished with status 'done' |
| 03-Feb-2017 16:22:34 | Running setup.py install for pymongo: started |
| 03-Feb-2017 16:22:35 | Running setup.py install for pymongo: finished with status 'done' |
| 03-Feb-2017 16:22:35 | Running setup.py install for pytz: started |
| 03-Feb-2017 16:22:36 | Running setup.py install for pytz: finished with status 'done' |
| 03-Feb-2017 16:22:36 | Found existing installation: requests 2.13.0 |
| 03-Feb-2017 16:22:36 | Uninstalling requests-2.13.0: |
| 03-Feb-2017 16:22:37 | Successfully uninstalled requests-2.13.0 |
| 03-Feb-2017 16:22:38 | Running setup.py install for xlrd: started |
| 03-Feb-2017 16:22:39 | Running setup.py install for xlrd: finished with status 'done' |
| 03-Feb-2017 16:22:39 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 03-Feb-2017 16:22:40 | ---> 9a4d4d6eb343 |
| 03-Feb-2017 16:22:40 | Removing intermediate container a3b87e351eb5 |
| 03-Feb-2017 16:22:40 | Step 8 : USER clowder |
| 03-Feb-2017 16:22:40 | ---> Running in 9439dac1f895 |
| 03-Feb-2017 16:22:41 | ---> e6adda8501eb |
| 03-Feb-2017 16:22:41 | Removing intermediate container 9439dac1f895 |
| 03-Feb-2017 16:22:41 | Step 9 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 03-Feb-2017 16:22:42 | ---> f13531308d2a |
| 03-Feb-2017 16:22:42 | Removing intermediate container 1f7b5ef03efa |
| 03-Feb-2017 16:22:42 | Step 10 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 03-Feb-2017 16:22:42 | ---> Running in 1342430d477a |
| 03-Feb-2017 16:22:42 | ---> 638dcd570617 |
| 03-Feb-2017 16:22:42 | Removing intermediate container 1342430d477a |
| 03-Feb-2017 16:22:42 | Step 11 : CMD extractor |
| 03-Feb-2017 16:22:42 | ---> Running in 2cd7ee76ad1c |
| 03-Feb-2017 16:22:42 | ---> c421ece5c86c |
| 03-Feb-2017 16:22:42 | Removing intermediate container 2cd7ee76ad1c |
| 03-Feb-2017 16:22:42 | Successfully built c421ece5c86c |
| 03-Feb-2017 16:22:42 | The push refers to a repository [docker.io/clowder/extractors-msc-islet] |
| 03-Feb-2017 16:22:42 | a3a514ba80a3: Preparing |
| 03-Feb-2017 16:22:42 | bfc8a6a4f87c: Preparing |
| 03-Feb-2017 16:22:42 | a31423c85135: Preparing |
| 03-Feb-2017 16:22:42 | dce1077ded56: Preparing |
| 03-Feb-2017 16:22:42 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:22:42 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:22:42 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:22:42 | e24a372680fc: Preparing |
| 03-Feb-2017 16:22:42 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:22:42 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:22:42 | af605e724c5a: Preparing |
| 03-Feb-2017 16:22:42 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:22:42 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:22:42 | 7d760664bbad: Waiting |
| 03-Feb-2017 16:22:42 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:22:42 | e24a372680fc: Waiting |
| 03-Feb-2017 16:22:42 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:22:42 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:22:42 | af605e724c5a: Waiting |
| 03-Feb-2017 16:22:42 | 59f161c3069d: Waiting |
| 03-Feb-2017 16:22:42 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:22:43 | 5e269aa11a2f: Mounted from clowder/extractors-msc-kidney |
| 03-Feb-2017 16:22:44 | 7d760664bbad: Mounted from clowder/extractors-msc-kidney |
| 03-Feb-2017 16:22:45 | a2688f6622a7: Mounted from clowder/extractors-msc-kidney |
| 03-Feb-2017 16:22:45 | dce1077ded56: Pushed |
| 03-Feb-2017 16:22:45 | e24a372680fc: Mounted from clowder/extractors-msc-kidney |
| 03-Feb-2017 16:22:46 | 5eb5bd4c5014: Mounted from clowder/extractors-msc-kidney |
| 03-Feb-2017 16:22:46 | a3a514ba80a3: Pushed |
| 03-Feb-2017 16:22:46 | d195a7a18c70: Mounted from clowder/extractors-msc-kidney |
| 03-Feb-2017 16:22:46 | af605e724c5a: Mounted from clowder/extractors-msc-kidney |
| 03-Feb-2017 16:22:46 | 59f161c3069d: Mounted from clowder/extractors-msc-kidney |
| 03-Feb-2017 16:22:46 | 4f03495a4d7d: Mounted from clowder/extractors-msc-kidney |
| 03-Feb-2017 16:22:47 | bfc8a6a4f87c: Pushed |
| 03-Feb-2017 16:22:47 | a31423c85135: Pushed |
| 03-Feb-2017 16:22:50 | master: digest: sha256:d6824ae03568dc8e5aa5d2d6ed336c51556b632d695e60f8c14a31ab1f5324a7 size: 3031 |
| 03-Feb-2017 16:22:50 | The push refers to a repository [docker.io/clowder/extractors-msc-islet] |
| 03-Feb-2017 16:22:50 | a3a514ba80a3: Preparing |
| 03-Feb-2017 16:22:50 | bfc8a6a4f87c: Preparing |
| 03-Feb-2017 16:22:50 | a31423c85135: Preparing |
| 03-Feb-2017 16:22:50 | dce1077ded56: Preparing |
| 03-Feb-2017 16:22:50 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:22:50 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:22:50 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:22:50 | e24a372680fc: Preparing |
| 03-Feb-2017 16:22:50 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:22:50 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:22:50 | af605e724c5a: Preparing |
| 03-Feb-2017 16:22:50 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:22:50 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:22:50 | 7d760664bbad: Waiting |
| 03-Feb-2017 16:22:50 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:22:50 | e24a372680fc: Waiting |
| 03-Feb-2017 16:22:50 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:22:50 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:22:50 | af605e724c5a: Waiting |
| 03-Feb-2017 16:22:50 | 59f161c3069d: Waiting |
| 03-Feb-2017 16:22:50 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:22:50 | dce1077ded56: Layer already exists |
| 03-Feb-2017 16:22:50 | a3a514ba80a3: Layer already exists |
| 03-Feb-2017 16:22:50 | bfc8a6a4f87c: Layer already exists |
| 03-Feb-2017 16:22:50 | a31423c85135: Layer already exists |
| 03-Feb-2017 16:22:50 | 5e269aa11a2f: Layer already exists |
| 03-Feb-2017 16:22:50 | 7d760664bbad: Layer already exists |
| 03-Feb-2017 16:22:50 | a2688f6622a7: Layer already exists |
| 03-Feb-2017 16:22:51 | e24a372680fc: Layer already exists |
| 03-Feb-2017 16:22:51 | 5eb5bd4c5014: Layer already exists |
| 03-Feb-2017 16:22:51 | d195a7a18c70: Layer already exists |
| 03-Feb-2017 16:22:51 | 4f03495a4d7d: Layer already exists |
| 03-Feb-2017 16:22:51 | af605e724c5a: Layer already exists |
| 03-Feb-2017 16:22:51 | 59f161c3069d: Layer already exists |
| 03-Feb-2017 16:22:51 | latest: digest: sha256:d6824ae03568dc8e5aa5d2d6ed336c51556b632d695e60f8c14a31ab1f5324a7 size: 3031 |
| 03-Feb-2017 16:22:51 | Untagged: 23804:latest |
| 03-Feb-2017 16:22:51 | Sending build context to Docker daemon 66.05 kB |
| 03-Feb-2017 16:22:51 | |
| 03-Feb-2017 16:22:51 | Step 1 : FROM clowder/pyclowder:1 |
| 03-Feb-2017 16:22:51 | ---> 2dd17798784b |
| 03-Feb-2017 16:22:51 | Step 2 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 03-Feb-2017 16:22:51 | ---> Using cache |
| 03-Feb-2017 16:22:51 | ---> 2c58a262fb36 |
| 03-Feb-2017 16:22:51 | Step 3 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.ChemCBCExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Chem.py" |
| 03-Feb-2017 16:22:51 | ---> Running in 26036dddeec4 |
| 03-Feb-2017 16:22:51 | ---> edde6fffd087 |
| 03-Feb-2017 16:22:51 | Removing intermediate container 26036dddeec4 |
| 03-Feb-2017 16:22:51 | Step 4 : USER root |
| 03-Feb-2017 16:22:51 | ---> Running in 1824827bdbe1 |
| 03-Feb-2017 16:22:52 | ---> 532e959b4b25 |
| 03-Feb-2017 16:22:52 | Removing intermediate container 1824827bdbe1 |
| 03-Feb-2017 16:22:52 | Step 5 : COPY requirements.txt /home/clowder/ |
| 03-Feb-2017 16:22:52 | ---> 8530a774b16e |
| 03-Feb-2017 16:22:52 | Removing intermediate container 2a036a9dfe6c |
| 03-Feb-2017 16:22:52 | Step 6 : RUN pip install --upgrade pip |
| 03-Feb-2017 16:22:52 | ---> Running in b52ad4fd4292 |
| 03-Feb-2017 16:22:54 | Collecting pip |
| 03-Feb-2017 16:22:54 | Downloading pip-9.0.1-py2.py3-none-any.whl (1.3MB) |
| 03-Feb-2017 16:22:55 | Installing collected packages: pip |
| 03-Feb-2017 16:22:55 | Found existing installation: pip 8.1.1 |
| 03-Feb-2017 16:22:55 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 03-Feb-2017 16:22:56 | Successfully installed pip-9.0.1 |
| 03-Feb-2017 16:22:57 | ---> cbc6f4673288 |
| 03-Feb-2017 16:22:57 | Removing intermediate container b52ad4fd4292 |
| 03-Feb-2017 16:22:57 | Step 7 : RUN pip install -r /home/clowder/requirements.txt |
| 03-Feb-2017 16:22:57 | ---> Running in 7afcf8091021 |
| 03-Feb-2017 16:22:58 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) |
| 03-Feb-2017 16:22:58 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 03-Feb-2017 16:22:58 | Downloading openpyxl-1.6.2.tar.gz (199kB) |
| 03-Feb-2017 16:22:59 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 03-Feb-2017 16:22:59 | Downloading pika-0.9.14.tar.gz (72kB) |
| 03-Feb-2017 16:23:00 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 03-Feb-2017 16:23:01 | Downloading pymongo-3.2.1.tar.gz (647kB) |
| 03-Feb-2017 16:23:02 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 03-Feb-2017 16:23:02 | Downloading pytz-2014.3.zip (482kB) |
| 03-Feb-2017 16:23:03 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 03-Feb-2017 16:23:03 | Downloading requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 03-Feb-2017 16:23:03 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) |
| 03-Feb-2017 16:23:03 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 03-Feb-2017 16:23:04 | Downloading xlrd-0.9.3.tar.gz (178kB) |
| 03-Feb-2017 16:23:04 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 03-Feb-2017 16:23:04 | Running setup.py install for openpyxl: started |
| 03-Feb-2017 16:23:05 | Running setup.py install for openpyxl: finished with status 'done' |
| 03-Feb-2017 16:23:05 | Found existing installation: pika 0.10.0 |
| 03-Feb-2017 16:23:05 | Uninstalling pika-0.10.0: |
| 03-Feb-2017 16:23:05 | Successfully uninstalled pika-0.10.0 |
| 03-Feb-2017 16:23:05 | Running setup.py install for pika: started |
| 03-Feb-2017 16:23:05 | Running setup.py install for pika: finished with status 'done' |
| 03-Feb-2017 16:23:05 | Running setup.py install for pymongo: started |
| 03-Feb-2017 16:23:06 | Running setup.py install for pymongo: finished with status 'done' |
| 03-Feb-2017 16:23:06 | Running setup.py install for pytz: started |
| 03-Feb-2017 16:23:06 | Running setup.py install for pytz: finished with status 'done' |
| 03-Feb-2017 16:23:07 | Found existing installation: requests 2.13.0 |
| 03-Feb-2017 16:23:07 | Uninstalling requests-2.13.0: |
| 03-Feb-2017 16:23:07 | Successfully uninstalled requests-2.13.0 |
| 03-Feb-2017 16:23:07 | Running setup.py install for xlrd: started |
| 03-Feb-2017 16:23:08 | Running setup.py install for xlrd: finished with status 'done' |
| 03-Feb-2017 16:23:08 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 03-Feb-2017 16:23:09 | ---> e5278fd0c8f4 |
| 03-Feb-2017 16:23:09 | Removing intermediate container 7afcf8091021 |
| 03-Feb-2017 16:23:09 | Step 8 : USER clowder |
| 03-Feb-2017 16:23:09 | ---> Running in 5a72627b9aa3 |
| 03-Feb-2017 16:23:09 | ---> cf400c216594 |
| 03-Feb-2017 16:23:09 | Removing intermediate container 5a72627b9aa3 |
| 03-Feb-2017 16:23:09 | Step 9 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 03-Feb-2017 16:23:10 | ---> 33d7e2db3fb3 |
| 03-Feb-2017 16:23:10 | Removing intermediate container 79d72e1b8966 |
| 03-Feb-2017 16:23:10 | Step 10 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 03-Feb-2017 16:23:10 | ---> Running in 730e7e5db9b1 |
| 03-Feb-2017 16:23:10 | ---> a559a8146b12 |
| 03-Feb-2017 16:23:10 | Removing intermediate container 730e7e5db9b1 |
| 03-Feb-2017 16:23:10 | Step 11 : CMD extractor |
| 03-Feb-2017 16:23:10 | ---> Running in 6e87f09da454 |
| 03-Feb-2017 16:23:10 | ---> 4645f1bdd0a5 |
| 03-Feb-2017 16:23:10 | Removing intermediate container 6e87f09da454 |
| 03-Feb-2017 16:23:10 | Successfully built 4645f1bdd0a5 |
| 03-Feb-2017 16:23:10 | The push refers to a repository [docker.io/clowder/extractors-msc-chemcbc] |
| 03-Feb-2017 16:23:10 | c21ee9275513: Preparing |
| 03-Feb-2017 16:23:10 | 1ecac42e291e: Preparing |
| 03-Feb-2017 16:23:10 | 07139b34af0e: Preparing |
| 03-Feb-2017 16:23:10 | ae7edbcc83c8: Preparing |
| 03-Feb-2017 16:23:10 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:23:10 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:23:10 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:23:10 | e24a372680fc: Preparing |
| 03-Feb-2017 16:23:10 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:23:10 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:23:10 | af605e724c5a: Preparing |
| 03-Feb-2017 16:23:10 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:23:10 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:23:10 | 7d760664bbad: Waiting |
| 03-Feb-2017 16:23:10 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:23:10 | af605e724c5a: Waiting |
| 03-Feb-2017 16:23:10 | e24a372680fc: Waiting |
| 03-Feb-2017 16:23:10 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:23:10 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:23:10 | 59f161c3069d: Waiting |
| 03-Feb-2017 16:23:10 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:23:11 | 5e269aa11a2f: Mounted from clowder/extractors-msc-islet |
| 03-Feb-2017 16:23:12 | 7d760664bbad: Mounted from clowder/extractors-msc-islet |
| 03-Feb-2017 16:23:13 | a2688f6622a7: Mounted from clowder/extractors-msc-islet |
| 03-Feb-2017 16:23:13 | ae7edbcc83c8: Pushed |
| 03-Feb-2017 16:23:13 | e24a372680fc: Mounted from clowder/extractors-msc-islet |
| 03-Feb-2017 16:23:13 | c21ee9275513: Pushed |
| 03-Feb-2017 16:23:14 | 5eb5bd4c5014: Mounted from clowder/extractors-msc-islet |
| 03-Feb-2017 16:23:14 | af605e724c5a: Mounted from clowder/extractors-msc-islet |
| 03-Feb-2017 16:23:14 | d195a7a18c70: Mounted from clowder/extractors-msc-islet |
| 03-Feb-2017 16:23:14 | 4f03495a4d7d: Mounted from clowder/extractors-msc-islet |
| 03-Feb-2017 16:23:14 | 59f161c3069d: Mounted from clowder/extractors-msc-islet |
| 03-Feb-2017 16:23:14 | 07139b34af0e: Pushed |
| 03-Feb-2017 16:23:14 | 1ecac42e291e: Pushed |
| 03-Feb-2017 16:23:17 | master: digest: sha256:14262b69263819dcfd8f01f705a6c19a6c265c09016d1de73778b193096c83be size: 3031 |
| 03-Feb-2017 16:23:17 | The push refers to a repository [docker.io/clowder/extractors-msc-chemcbc] |
| 03-Feb-2017 16:23:17 | c21ee9275513: Preparing |
| 03-Feb-2017 16:23:17 | 1ecac42e291e: Preparing |
| 03-Feb-2017 16:23:17 | 07139b34af0e: Preparing |
| 03-Feb-2017 16:23:17 | ae7edbcc83c8: Preparing |
| 03-Feb-2017 16:23:17 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:23:17 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:23:17 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:23:17 | e24a372680fc: Preparing |
| 03-Feb-2017 16:23:17 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:23:17 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:23:17 | af605e724c5a: Preparing |
| 03-Feb-2017 16:23:17 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:23:17 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:23:17 | 7d760664bbad: Waiting |
| 03-Feb-2017 16:23:17 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:23:17 | e24a372680fc: Waiting |
| 03-Feb-2017 16:23:17 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:23:17 | af605e724c5a: Waiting |
| 03-Feb-2017 16:23:17 | 59f161c3069d: Waiting |
| 03-Feb-2017 16:23:17 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:23:17 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:23:18 | 07139b34af0e: Layer already exists |
| 03-Feb-2017 16:23:18 | 5e269aa11a2f: Layer already exists |
| 03-Feb-2017 16:23:18 | ae7edbcc83c8: Layer already exists |
| 03-Feb-2017 16:23:18 | c21ee9275513: Layer already exists |
| 03-Feb-2017 16:23:18 | 1ecac42e291e: Layer already exists |
| 03-Feb-2017 16:23:18 | e24a372680fc: Layer already exists |
| 03-Feb-2017 16:23:18 | a2688f6622a7: Layer already exists |
| 03-Feb-2017 16:23:18 | 5eb5bd4c5014: Layer already exists |
| 03-Feb-2017 16:23:18 | 7d760664bbad: Layer already exists |
| 03-Feb-2017 16:23:18 | d195a7a18c70: Layer already exists |
| 03-Feb-2017 16:23:18 | 4f03495a4d7d: Layer already exists |
| 03-Feb-2017 16:23:18 | af605e724c5a: Layer already exists |
| 03-Feb-2017 16:23:18 | 59f161c3069d: Layer already exists |
| 03-Feb-2017 16:23:19 | latest: digest: sha256:14262b69263819dcfd8f01f705a6c19a6c265c09016d1de73778b193096c83be size: 3031 |
| 03-Feb-2017 16:23:19 | Untagged: 23804:latest |
| 03-Feb-2017 16:23:19 | Sending build context to Docker daemon 198.1 kB |
| 03-Feb-2017 16:23:19 | |
| 03-Feb-2017 16:23:19 | Step 1 : FROM clowder/pyclowder:1 |
| 03-Feb-2017 16:23:19 | ---> 2dd17798784b |
| 03-Feb-2017 16:23:19 | Step 2 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 03-Feb-2017 16:23:19 | ---> Using cache |
| 03-Feb-2017 16:23:19 | ---> 2c58a262fb36 |
| 03-Feb-2017 16:23:19 | Step 3 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.MonitorExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Monitor.py" |
| 03-Feb-2017 16:23:19 | ---> Running in 7f2286eeac76 |
| 03-Feb-2017 16:23:19 | ---> c15e5992493d |
| 03-Feb-2017 16:23:19 | Removing intermediate container 7f2286eeac76 |
| 03-Feb-2017 16:23:19 | Step 4 : USER root |
| 03-Feb-2017 16:23:19 | ---> Running in ce38ba90307f |
| 03-Feb-2017 16:23:19 | ---> cfa406d63bb4 |
| 03-Feb-2017 16:23:19 | Removing intermediate container ce38ba90307f |
| 03-Feb-2017 16:23:19 | Step 5 : COPY requirements.txt /home/clowder/ |
| 03-Feb-2017 16:23:19 | ---> e133d968fbac |
| 03-Feb-2017 16:23:19 | Removing intermediate container 571ca394d872 |
| 03-Feb-2017 16:23:19 | Step 6 : RUN pip install --upgrade pip |
| 03-Feb-2017 16:23:19 | ---> Running in 5e5a9d8b9a3d |
| 03-Feb-2017 16:23:21 | Collecting pip |
| 03-Feb-2017 16:23:21 | Downloading pip-9.0.1-py2.py3-none-any.whl (1.3MB) |
| 03-Feb-2017 16:23:21 | Installing collected packages: pip |
| 03-Feb-2017 16:23:21 | Found existing installation: pip 8.1.1 |
| 03-Feb-2017 16:23:21 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 03-Feb-2017 16:23:23 | Successfully installed pip-9.0.1 |
| 03-Feb-2017 16:23:24 | ---> 513371ef8839 |
| 03-Feb-2017 16:23:24 | Removing intermediate container 5e5a9d8b9a3d |
| 03-Feb-2017 16:23:24 | Step 7 : RUN pip install -r /home/clowder/requirements.txt |
| 03-Feb-2017 16:23:24 | ---> Running in 5cb01f3d98d3 |
| 03-Feb-2017 16:23:25 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) |
| 03-Feb-2017 16:23:25 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 03-Feb-2017 16:23:25 | Downloading openpyxl-1.6.2.tar.gz (199kB) |
| 03-Feb-2017 16:23:26 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 03-Feb-2017 16:23:26 | Downloading pika-0.9.14.tar.gz (72kB) |
| 03-Feb-2017 16:23:27 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 03-Feb-2017 16:23:28 | Downloading pymongo-3.2.1.tar.gz (647kB) |
| 03-Feb-2017 16:23:29 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 03-Feb-2017 16:23:29 | Downloading pytz-2014.3.zip (482kB) |
| 03-Feb-2017 16:23:30 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 03-Feb-2017 16:23:30 | Downloading requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 03-Feb-2017 16:23:30 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) |
| 03-Feb-2017 16:23:30 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 03-Feb-2017 16:23:30 | Downloading xlrd-0.9.3.tar.gz (178kB) |
| 03-Feb-2017 16:23:31 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 03-Feb-2017 16:23:31 | Running setup.py install for openpyxl: started |
| 03-Feb-2017 16:23:32 | Running setup.py install for openpyxl: finished with status 'done' |
| 03-Feb-2017 16:23:32 | Found existing installation: pika 0.10.0 |
| 03-Feb-2017 16:23:32 | Uninstalling pika-0.10.0: |
| 03-Feb-2017 16:23:32 | Successfully uninstalled pika-0.10.0 |
| 03-Feb-2017 16:23:32 | Running setup.py install for pika: started |
| 03-Feb-2017 16:23:32 | Running setup.py install for pika: finished with status 'done' |
| 03-Feb-2017 16:23:32 | Running setup.py install for pymongo: started |
| 03-Feb-2017 16:23:33 | Running setup.py install for pymongo: finished with status 'done' |
| 03-Feb-2017 16:23:33 | Running setup.py install for pytz: started |
| 03-Feb-2017 16:23:35 | Running setup.py install for pytz: finished with status 'done' |
| 03-Feb-2017 16:23:35 | Found existing installation: requests 2.13.0 |
| 03-Feb-2017 16:23:35 | Uninstalling requests-2.13.0: |
| 03-Feb-2017 16:23:35 | Successfully uninstalled requests-2.13.0 |
| 03-Feb-2017 16:23:36 | Running setup.py install for xlrd: started |
| 03-Feb-2017 16:23:37 | Running setup.py install for xlrd: finished with status 'done' |
| 03-Feb-2017 16:23:37 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 03-Feb-2017 16:23:38 | ---> 1639935ea97b |
| 03-Feb-2017 16:23:38 | Removing intermediate container 5cb01f3d98d3 |
| 03-Feb-2017 16:23:38 | Step 8 : USER clowder |
| 03-Feb-2017 16:23:38 | ---> Running in 4b818bc97c6f |
| 03-Feb-2017 16:23:38 | ---> b8debf14c9c5 |
| 03-Feb-2017 16:23:38 | Removing intermediate container 4b818bc97c6f |
| 03-Feb-2017 16:23:38 | Step 9 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 03-Feb-2017 16:23:39 | ---> 4d394e498c64 |
| 03-Feb-2017 16:23:39 | Removing intermediate container 3dda94a590c2 |
| 03-Feb-2017 16:23:39 | Step 10 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 03-Feb-2017 16:23:39 | ---> Running in 7ca2cd50ccc1 |
| 03-Feb-2017 16:23:39 | ---> 39faf5180305 |
| 03-Feb-2017 16:23:39 | Removing intermediate container 7ca2cd50ccc1 |
| 03-Feb-2017 16:23:39 | Step 11 : CMD extractor |
| 03-Feb-2017 16:23:39 | ---> Running in 697be9085928 |
| 03-Feb-2017 16:23:40 | ---> cec07945682a |
| 03-Feb-2017 16:23:40 | Removing intermediate container 697be9085928 |
| 03-Feb-2017 16:23:40 | Successfully built cec07945682a |
| 03-Feb-2017 16:23:40 | The push refers to a repository [docker.io/clowder/extractors-msc-monitor] |
| 03-Feb-2017 16:23:40 | c940dde0cb97: Preparing |
| 03-Feb-2017 16:23:40 | 2708bbab64b3: Preparing |
| 03-Feb-2017 16:23:40 | 4deb76aa51e5: Preparing |
| 03-Feb-2017 16:23:40 | a19440beedca: Preparing |
| 03-Feb-2017 16:23:40 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:23:40 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:23:40 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:23:40 | e24a372680fc: Preparing |
| 03-Feb-2017 16:23:40 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:23:40 | 7d760664bbad: Waiting |
| 03-Feb-2017 16:23:40 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:23:40 | af605e724c5a: Preparing |
| 03-Feb-2017 16:23:40 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:23:40 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:23:40 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:23:40 | e24a372680fc: Waiting |
| 03-Feb-2017 16:23:40 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:23:40 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:23:40 | af605e724c5a: Waiting |
| 03-Feb-2017 16:23:40 | 59f161c3069d: Waiting |
| 03-Feb-2017 16:23:40 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:23:41 | 5e269aa11a2f: Mounted from clowder/extractors-msc-chemcbc |
| 03-Feb-2017 16:23:42 | 7d760664bbad: Mounted from clowder/extractors-msc-chemcbc |
| 03-Feb-2017 16:23:42 | c940dde0cb97: Pushed |
| 03-Feb-2017 16:23:42 | a19440beedca: Pushed |
| 03-Feb-2017 16:23:42 | a2688f6622a7: Mounted from clowder/extractors-msc-chemcbc |
| 03-Feb-2017 16:23:42 | e24a372680fc: Mounted from clowder/extractors-msc-chemcbc |
| 03-Feb-2017 16:23:43 | 5eb5bd4c5014: Mounted from clowder/extractors-msc-chemcbc |
| 03-Feb-2017 16:23:43 | af605e724c5a: Mounted from clowder/extractors-msc-chemcbc |
| 03-Feb-2017 16:23:43 | d195a7a18c70: Mounted from clowder/extractors-msc-chemcbc |
| 03-Feb-2017 16:23:43 | 59f161c3069d: Mounted from clowder/extractors-msc-chemcbc |
| 03-Feb-2017 16:23:43 | 4deb76aa51e5: Pushed |
| 03-Feb-2017 16:23:44 | 4f03495a4d7d: Mounted from clowder/extractors-msc-chemcbc |
| 03-Feb-2017 16:23:45 | 2708bbab64b3: Pushed |
| 03-Feb-2017 16:23:48 | master: digest: sha256:953fc17951608a54f931199cb77f6c65ace872740527d7e2ee2c6f86f8ccf989 size: 3031 |
| 03-Feb-2017 16:23:48 | The push refers to a repository [docker.io/clowder/extractors-msc-monitor] |
| 03-Feb-2017 16:23:48 | c940dde0cb97: Preparing |
| 03-Feb-2017 16:23:48 | 2708bbab64b3: Preparing |
| 03-Feb-2017 16:23:48 | 4deb76aa51e5: Preparing |
| 03-Feb-2017 16:23:48 | a19440beedca: Preparing |
| 03-Feb-2017 16:23:48 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:23:48 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:23:48 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:23:48 | e24a372680fc: Preparing |
| 03-Feb-2017 16:23:48 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:23:48 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:23:48 | af605e724c5a: Preparing |
| 03-Feb-2017 16:23:48 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:23:48 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:23:48 | e24a372680fc: Waiting |
| 03-Feb-2017 16:23:48 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:23:48 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:23:48 | af605e724c5a: Waiting |
| 03-Feb-2017 16:23:48 | 59f161c3069d: Waiting |
| 03-Feb-2017 16:23:48 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:23:48 | 7d760664bbad: Waiting |
| 03-Feb-2017 16:23:48 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:23:49 | a19440beedca: Layer already exists |
| 03-Feb-2017 16:23:49 | c940dde0cb97: Layer already exists |
| 03-Feb-2017 16:23:49 | 5e269aa11a2f: Layer already exists |
| 03-Feb-2017 16:23:49 | 2708bbab64b3: Layer already exists |
| 03-Feb-2017 16:23:49 | 4deb76aa51e5: Layer already exists |
| 03-Feb-2017 16:23:49 | 7d760664bbad: Layer already exists |
| 03-Feb-2017 16:23:49 | e24a372680fc: Layer already exists |
| 03-Feb-2017 16:23:49 | a2688f6622a7: Layer already exists |
| 03-Feb-2017 16:23:49 | 5eb5bd4c5014: Layer already exists |
| 03-Feb-2017 16:23:49 | d195a7a18c70: Layer already exists |
| 03-Feb-2017 16:23:49 | af605e724c5a: Layer already exists |
| 03-Feb-2017 16:23:49 | 4f03495a4d7d: Layer already exists |
| 03-Feb-2017 16:23:49 | 59f161c3069d: Layer already exists |
| 03-Feb-2017 16:23:49 | latest: digest: sha256:953fc17951608a54f931199cb77f6c65ace872740527d7e2ee2c6f86f8ccf989 size: 3031 |
| 03-Feb-2017 16:23:49 | Untagged: 23804:latest |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 557.1 kB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 1.114 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 1.671 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 2.228 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 2.785 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 3.342 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 3.899 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 4.456 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 5.014 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 5.571 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 6.128 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 6.685 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 7.242 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 7.799 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 8.356 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 8.913 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 9.47 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 10.03 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 10.58 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 11.14 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 11.7 MB |
| 03-Feb-2017 16:23:50 | Sending build context to Docker daemon 12.1 MB |
| 03-Feb-2017 16:23:50 | |
| 03-Feb-2017 16:23:50 | Step 1 : FROM clowder/pyclowder:1 |
| 03-Feb-2017 16:23:50 | ---> 2dd17798784b |
| 03-Feb-2017 16:23:50 | Step 2 : MAINTAINER Yan Zhao <yanzhao3@illinois.edu> |
| 03-Feb-2017 16:23:50 | ---> Using cache |
| 03-Feb-2017 16:23:50 | ---> 2c58a262fb36 |
| 03-Feb-2017 16:23:50 | Step 3 : ENV RABBITMQ_URI "" RABBITMQ_EXCHANGE "clowder" RABBITMQ_VHOST "%2F" RABBITMQ_QUEUE "ncsa.msc.PhenotypeExtractor" MONGO_URI "" DB_USERNAME "" DB_PASSWORD "" MAIN_SCRIPT "extractor-Phenotype.py" |
| 03-Feb-2017 16:23:50 | ---> Running in 82e10ee52b08 |
| 03-Feb-2017 16:23:50 | ---> 7c7ba4ec74c5 |
| 03-Feb-2017 16:23:50 | Removing intermediate container 82e10ee52b08 |
| 03-Feb-2017 16:23:50 | Step 4 : USER root |
| 03-Feb-2017 16:23:50 | ---> Running in 793dc91b04b2 |
| 03-Feb-2017 16:23:50 | ---> 4012d5c13d3a |
| 03-Feb-2017 16:23:50 | Removing intermediate container 793dc91b04b2 |
| 03-Feb-2017 16:23:50 | Step 5 : COPY requirements.txt /home/clowder/ |
| 03-Feb-2017 16:23:50 | ---> bd9372224242 |
| 03-Feb-2017 16:23:50 | Removing intermediate container c7b1be05b56c |
| 03-Feb-2017 16:23:50 | Step 6 : RUN pip install --upgrade pip |
| 03-Feb-2017 16:23:50 | ---> Running in 22eefddd9d38 |
| 03-Feb-2017 16:23:52 | Collecting pip |
| 03-Feb-2017 16:23:52 | Downloading pip-9.0.1-py2.py3-none-any.whl (1.3MB) |
| 03-Feb-2017 16:23:53 | Installing collected packages: pip |
| 03-Feb-2017 16:23:53 | Found existing installation: pip 8.1.1 |
| 03-Feb-2017 16:23:53 | Not uninstalling pip at /usr/lib/python2.7/dist-packages, outside environment /usr |
| 03-Feb-2017 16:23:54 | Successfully installed pip-9.0.1 |
| 03-Feb-2017 16:23:54 | ---> 47a63a76bfde |
| 03-Feb-2017 16:23:54 | Removing intermediate container 22eefddd9d38 |
| 03-Feb-2017 16:23:54 | Step 7 : RUN pip install -r /home/clowder/requirements.txt |
| 03-Feb-2017 16:23:55 | ---> Running in c668c94d9d56 |
| 03-Feb-2017 16:23:55 | Requirement already satisfied: argparse==1.2.1 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 1)) |
| 03-Feb-2017 16:23:56 | Collecting openpyxl==1.6.2 (from -r /home/clowder/requirements.txt (line 2)) |
| 03-Feb-2017 16:23:56 | Downloading openpyxl-1.6.2.tar.gz (199kB) |
| 03-Feb-2017 16:23:57 | Collecting pika==0.9.14 (from -r /home/clowder/requirements.txt (line 3)) |
| 03-Feb-2017 16:23:57 | Downloading pika-0.9.14.tar.gz (72kB) |
| 03-Feb-2017 16:23:57 | Collecting pymongo==3.2.1 (from -r /home/clowder/requirements.txt (line 4)) |
| 03-Feb-2017 16:23:58 | Downloading pymongo-3.2.1.tar.gz (647kB) |
| 03-Feb-2017 16:23:59 | Collecting pytz==2014.3 (from -r /home/clowder/requirements.txt (line 5)) |
| 03-Feb-2017 16:23:59 | Downloading pytz-2014.3.zip (482kB) |
| 03-Feb-2017 16:24:00 | Collecting requests==2.2.1 (from -r /home/clowder/requirements.txt (line 6)) |
| 03-Feb-2017 16:24:01 | Downloading requests-2.2.1-py2.py3-none-any.whl (625kB) |
| 03-Feb-2017 16:24:01 | Requirement already satisfied: wsgiref==0.1.2 in /usr/lib/python2.7 (from -r /home/clowder/requirements.txt (line 7)) |
| 03-Feb-2017 16:24:01 | Collecting xlrd==0.9.3 (from -r /home/clowder/requirements.txt (line 8)) |
| 03-Feb-2017 16:24:01 | Downloading xlrd-0.9.3.tar.gz (178kB) |
| 03-Feb-2017 16:24:02 | Installing collected packages: openpyxl, pika, pymongo, pytz, requests, xlrd |
| 03-Feb-2017 16:24:02 | Running setup.py install for openpyxl: started |
| 03-Feb-2017 16:24:02 | Running setup.py install for openpyxl: finished with status 'done' |
| 03-Feb-2017 16:24:03 | Found existing installation: pika 0.10.0 |
| 03-Feb-2017 16:24:03 | Uninstalling pika-0.10.0: |
| 03-Feb-2017 16:24:03 | Successfully uninstalled pika-0.10.0 |
| 03-Feb-2017 16:24:03 | Running setup.py install for pika: started |
| 03-Feb-2017 16:24:03 | Running setup.py install for pika: finished with status 'done' |
| 03-Feb-2017 16:24:03 | Running setup.py install for pymongo: started |
| 03-Feb-2017 16:24:03 | Running setup.py install for pymongo: finished with status 'done' |
| 03-Feb-2017 16:24:04 | Running setup.py install for pytz: started |
| 03-Feb-2017 16:24:04 | Running setup.py install for pytz: finished with status 'done' |
| 03-Feb-2017 16:24:04 | Found existing installation: requests 2.13.0 |
| 03-Feb-2017 16:24:04 | Uninstalling requests-2.13.0: |
| 03-Feb-2017 16:24:05 | Successfully uninstalled requests-2.13.0 |
| 03-Feb-2017 16:24:05 | Running setup.py install for xlrd: started |
| 03-Feb-2017 16:24:06 | Running setup.py install for xlrd: finished with status 'done' |
| 03-Feb-2017 16:24:06 | Successfully installed openpyxl-1.6.2 pika-0.9.14 pymongo-3.2.1 pytz-2014.3 requests-2.2.1 xlrd-0.9.3 |
| 03-Feb-2017 16:24:07 | ---> fc64f47646c2 |
| 03-Feb-2017 16:24:07 | Removing intermediate container c668c94d9d56 |
| 03-Feb-2017 16:24:07 | Step 8 : USER clowder |
| 03-Feb-2017 16:24:07 | ---> Running in 12f6bed617f4 |
| 03-Feb-2017 16:24:07 | ---> bf28b5f50168 |
| 03-Feb-2017 16:24:07 | Removing intermediate container 12f6bed617f4 |
| 03-Feb-2017 16:24:07 | Step 9 : COPY entrypoint.sh *.py *.json /home/clowder/ |
| 03-Feb-2017 16:24:07 | ---> c420a8202720 |
| 03-Feb-2017 16:24:07 | Removing intermediate container b4b32c85780d |
| 03-Feb-2017 16:24:07 | Step 10 : ENTRYPOINT /home/clowder/entrypoint.sh |
| 03-Feb-2017 16:24:08 | ---> Running in d2d2d16cfa09 |
| 03-Feb-2017 16:24:08 | ---> 49510b15f297 |
| 03-Feb-2017 16:24:08 | Removing intermediate container d2d2d16cfa09 |
| 03-Feb-2017 16:24:08 | Step 11 : CMD extractor |
| 03-Feb-2017 16:24:08 | ---> Running in 3e0fede85eff |
| 03-Feb-2017 16:24:08 | ---> 44cf7749aa77 |
| 03-Feb-2017 16:24:08 | Removing intermediate container 3e0fede85eff |
| 03-Feb-2017 16:24:08 | Successfully built 44cf7749aa77 |
| 03-Feb-2017 16:24:08 | The push refers to a repository [docker.io/clowder/extractors-msc-phenotype] |
| 03-Feb-2017 16:24:08 | 0b9105b5841e: Preparing |
| 03-Feb-2017 16:24:08 | df7c68aadd5c: Preparing |
| 03-Feb-2017 16:24:08 | f6520917d756: Preparing |
| 03-Feb-2017 16:24:08 | fc5535cc0a1e: Preparing |
| 03-Feb-2017 16:24:08 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:24:08 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:24:08 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:24:08 | e24a372680fc: Preparing |
| 03-Feb-2017 16:24:08 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:24:08 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:24:08 | af605e724c5a: Preparing |
| 03-Feb-2017 16:24:08 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:24:08 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:24:08 | 7d760664bbad: Waiting |
| 03-Feb-2017 16:24:08 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:24:08 | e24a372680fc: Waiting |
| 03-Feb-2017 16:24:08 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:24:08 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:24:08 | 59f161c3069d: Waiting |
| 03-Feb-2017 16:24:08 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:24:08 | af605e724c5a: Waiting |
| 03-Feb-2017 16:24:09 | 5e269aa11a2f: Mounted from clowder/extractors-msc-monitor |
| 03-Feb-2017 16:24:10 | 7d760664bbad: Mounted from clowder/extractors-msc-monitor |
| 03-Feb-2017 16:24:11 | 0b9105b5841e: Pushed |
| 03-Feb-2017 16:24:11 | fc5535cc0a1e: Pushed |
| 03-Feb-2017 16:24:11 | a2688f6622a7: Mounted from clowder/extractors-msc-monitor |
| 03-Feb-2017 16:24:11 | e24a372680fc: Mounted from clowder/extractors-msc-monitor |
| 03-Feb-2017 16:24:11 | 5eb5bd4c5014: Mounted from clowder/extractors-msc-monitor |
| 03-Feb-2017 16:24:11 | d195a7a18c70: Mounted from clowder/extractors-msc-monitor |
| 03-Feb-2017 16:24:12 | af605e724c5a: Mounted from clowder/extractors-msc-monitor |
| 03-Feb-2017 16:24:12 | 59f161c3069d: Mounted from clowder/extractors-msc-monitor |
| 03-Feb-2017 16:24:12 | 4f03495a4d7d: Mounted from clowder/extractors-msc-monitor |
| 03-Feb-2017 16:24:12 | f6520917d756: Pushed |
| 03-Feb-2017 16:24:13 | df7c68aadd5c: Pushed |
| 03-Feb-2017 16:24:15 | master: digest: sha256:0e81355fdf6cd7082cb829bb9ccca289c79d58d3c07388ee0664c75d6e6a95ae size: 3031 |
| 03-Feb-2017 16:24:16 | The push refers to a repository [docker.io/clowder/extractors-msc-phenotype] |
| 03-Feb-2017 16:24:16 | 0b9105b5841e: Preparing |
| 03-Feb-2017 16:24:16 | df7c68aadd5c: Preparing |
| 03-Feb-2017 16:24:16 | f6520917d756: Preparing |
| 03-Feb-2017 16:24:16 | fc5535cc0a1e: Preparing |
| 03-Feb-2017 16:24:16 | 5e269aa11a2f: Preparing |
| 03-Feb-2017 16:24:16 | 7d760664bbad: Preparing |
| 03-Feb-2017 16:24:16 | a2688f6622a7: Preparing |
| 03-Feb-2017 16:24:16 | e24a372680fc: Preparing |
| 03-Feb-2017 16:24:16 | 5eb5bd4c5014: Preparing |
| 03-Feb-2017 16:24:16 | d195a7a18c70: Preparing |
| 03-Feb-2017 16:24:16 | af605e724c5a: Preparing |
| 03-Feb-2017 16:24:16 | 59f161c3069d: Preparing |
| 03-Feb-2017 16:24:16 | 4f03495a4d7d: Preparing |
| 03-Feb-2017 16:24:16 | 5eb5bd4c5014: Waiting |
| 03-Feb-2017 16:24:16 | d195a7a18c70: Waiting |
| 03-Feb-2017 16:24:16 | af605e724c5a: Waiting |
| 03-Feb-2017 16:24:16 | 59f161c3069d: Waiting |
| 03-Feb-2017 16:24:16 | 4f03495a4d7d: Waiting |
| 03-Feb-2017 16:24:16 | 7d760664bbad: Waiting |
| 03-Feb-2017 16:24:16 | a2688f6622a7: Waiting |
| 03-Feb-2017 16:24:16 | e24a372680fc: Waiting |
| 03-Feb-2017 16:24:16 | f6520917d756: Layer already exists |
| 03-Feb-2017 16:24:16 | df7c68aadd5c: Layer already exists |
| 03-Feb-2017 16:24:16 | fc5535cc0a1e: Layer already exists |
| 03-Feb-2017 16:24:16 | 5e269aa11a2f: Layer already exists |
| 03-Feb-2017 16:24:16 | 0b9105b5841e: Layer already exists |
| 03-Feb-2017 16:24:16 | 7d760664bbad: Layer already exists |
| 03-Feb-2017 16:24:16 | e24a372680fc: Layer already exists |
| 03-Feb-2017 16:24:16 | d195a7a18c70: Layer already exists |
| 03-Feb-2017 16:24:16 | 5eb5bd4c5014: Layer already exists |
| 03-Feb-2017 16:24:16 | a2688f6622a7: Layer already exists |
| 03-Feb-2017 16:24:16 | af605e724c5a: Layer already exists |
| 03-Feb-2017 16:24:16 | 59f161c3069d: Layer already exists |
| 03-Feb-2017 16:24:17 | 4f03495a4d7d: Layer already exists |
| 03-Feb-2017 16:24:17 | latest: digest: sha256:0e81355fdf6cd7082cb829bb9ccca289c79d58d3c07388ee0664c75d6e6a95ae size: 3031 |
| 03-Feb-2017 16:24:17 | Untagged: 23804:latest |
| 03-Feb-2017 16:24:17 | Finished task 'docker build' with result: Success |
| 03-Feb-2017 16:24:17 | Running post build plugin 'Docker Container Cleanup' |
| 03-Feb-2017 16:24:18 | Running post build plugin 'NCover Results Collector' |
| 03-Feb-2017 16:24:18 | Running post build plugin 'Clover Results Collector' |
| 03-Feb-2017 16:24:18 | Running post build plugin 'npm Cache Cleanup' |
| 03-Feb-2017 16:24:18 | Running post build plugin 'Artifact Copier' |
| 03-Feb-2017 16:24:18 | Finalising the build... |
| 03-Feb-2017 16:24:18 | Stopping timer. |
| 03-Feb-2017 16:24:18 | Build CATS-MSC1-JOB1-2 completed. |
| 03-Feb-2017 16:24:18 | Running on server: post build plugin 'NCover Results Collector' |
| 03-Feb-2017 16:24:18 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 03-Feb-2017 16:24:18 | Running on server: post build plugin 'Clover Delta Calculator' |
| 03-Feb-2017 16:24:18 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 03-Feb-2017 16:24:18 | All post build plugins have finished |
| 03-Feb-2017 16:24:18 | Generating build results summary... |
| 03-Feb-2017 16:24:18 | Saving build results to disk... |
| 03-Feb-2017 16:24:18 | Logging substituted variables... |
| 03-Feb-2017 16:24:18 | Indexing build results... |
| 03-Feb-2017 16:24:18 | Finished building CATS-MSC1-JOB1-2. |