Build: #26 was successful
Job: Default Job was successful
Build log
The build generated 421 lines of output. Download or view full build log.
29-Sep-2019 17:04:45 | Build Clowder - pyclowder - Default Job #26 (CATS-PYC-JOB1-26) started building on agent buildserver-2.os.ncsa.edu |
29-Sep-2019 17:04:45 | Remote agent on host buildserver-2.os.ncsa.edu |
29-Sep-2019 17:04:45 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1 |
29-Sep-2019 17:04:45 | Executing build Clowder - pyclowder - Default Job #26 (CATS-PYC-JOB1-26) |
29-Sep-2019 17:04:45 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
29-Sep-2019 17:04:45 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1 |
29-Sep-2019 17:04:45 | Updating source code to revision: 0b3e2e8f213e3b233245a9867ffb5e152ee05de3 |
29-Sep-2019 17:04:45 | Enforcing full fetch as requested revision has not been found on the configured branch |
29-Sep-2019 17:04:45 | Fetching 'refs/heads/*' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch. |
29-Sep-2019 17:04:45 | Warning: Permanently added '[127.0.0.1]:39245' (RSA) to the list of known hosts. |
29-Sep-2019 17:04:46 | Checking out revision 0b3e2e8f213e3b233245a9867ffb5e152ee05de3. |
29-Sep-2019 17:04:46 | Warning: you are leaving 9 commits behind, not connected to |
29-Sep-2019 17:04:46 | any of your branches: |
29-Sep-2019 17:04:46 | |
29-Sep-2019 17:04:46 | 2f7d30f set version to 2.2.2 |
29-Sep-2019 17:04:46 | 3a9cb7f Merge remote-tracking branch 'origin/master' into release/2.2.1 |
29-Sep-2019 17:04:46 | 4ab16b5 release 2.2.1 |
29-Sep-2019 17:04:46 | 0463436 update version number |
29-Sep-2019 17:04:46 | ... and 5 more. |
29-Sep-2019 17:04:46 | |
29-Sep-2019 17:04:46 | If you want to keep them by creating a new branch, this may be a good time |
29-Sep-2019 17:04:46 | to do so with: |
29-Sep-2019 17:04:46 | |
29-Sep-2019 17:04:46 | git branch <new-branch-name> 2f7d30f |
29-Sep-2019 17:04:46 | |
29-Sep-2019 17:04:46 | Switched to branch 'master' |
29-Sep-2019 17:04:46 | Updated source code to revision: 0b3e2e8f213e3b233245a9867ffb5e152ee05de3 |
29-Sep-2019 17:04:46 | Finished task 'Checkout Default Repository' with result: Success |
29-Sep-2019 17:04:46 | Running pre-build action: VCS Version Collector |
29-Sep-2019 17:04:46 | Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
29-Sep-2019 17:04:46 | Beginning to execute external process for build 'Clowder - pyclowder - Default Job #26 (CATS-PYC-JOB1-26)' ... running command line: /bin/sh docker.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=master bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=master bamboo_repository_revision_number=0b3e2e8f213e3b233245a9867ffb5e152ee05de3 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC-JOB1-26 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1 bamboo_planRepository_1_name=pyclowder bamboo_buildKey=CATS-PYC-JOB1 bamboo_repository_142540804_git_branch=master bamboo_capability_system_os=linux bamboo_shortPlanName=pyclowder bamboo_repository_142540804_previous_revision_number=2f7d30fad2ee3a92cd203afb62a6654623151c25 bamboo_planRepository_name=pyclowder bamboo_repository_142540804_revision_number=0b3e2e8f213e3b233245a9867ffb5e152ee05de3 bamboo_buildNumber=26 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC-JOB1-26 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_agentId=140673028 bamboo_planName=Clowder - pyclowder bamboo_shortPlanKey=PYC bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_repository_142540804_git_username= bamboo_repository_142540804_branch_name=master bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=0b3e2e8f213e3b233245a9867ffb5e152ee05de3 bamboo_buildTimeStamp=2019-09-29T15:50:29.114-05:00 bamboo_repository_previous_revision_number=2f7d30fad2ee3a92cd203afb62a6654623151c25 bamboo_repository_142540804_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_planRepository_previousRevision=2f7d30fad2ee3a92cd203afb62a6654623151c25 bamboo_repository_git_branch=master bamboo_buildResultKey=CATS-PYC-JOB1-26 bamboo_repository_branch_name=master bamboo_buildPlanName=Clowder - pyclowder - Default Job bamboo_planRepository_1_revision=0b3e2e8f213e3b233245a9867ffb5e152ee05de3 bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=pyclowder bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=master bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=2f7d30fad2ee3a92cd203afb62a6654623151c25 bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=master bamboo_repository_142540804_name=pyclowder bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=master bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=CATS-PYC bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC-JOB1 bamboo_planKey=CATS-PYC bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=master |
29-Sep-2019 17:04:46 | Sending build context to Docker daemon 267.8kB |
29-Sep-2019 17:04:46 | |
29-Sep-2019 17:04:46 | Step 1/10 : FROM ubuntu:16.04 |
29-Sep-2019 17:04:46 | ---> 657d80a6401d |
29-Sep-2019 17:04:46 | Step 2/10 : ARG PYTHON_VERSION="2.7" |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 7d071fce2822 |
29-Sep-2019 17:04:46 | Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 6d4fba816a1e |
29-Sep-2019 17:04:46 | Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 120aa51655ff |
29-Sep-2019 17:04:46 | Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 6d76b3beb121 |
29-Sep-2019 17:04:46 | Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 860cbc248fe1 |
29-Sep-2019 17:04:46 | Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 62eafaf985b6 |
29-Sep-2019 17:04:46 | Step 8/10 : WORKDIR /home/clowder |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 3489a864819b |
29-Sep-2019 17:04:46 | Step 9/10 : COPY notifications.json /home/clowder/ |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 54a193a02c9b |
29-Sep-2019 17:04:46 | Step 10/10 : CMD python "./${MAIN_SCRIPT}" |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> dd7058a2620a |
29-Sep-2019 17:04:46 | Successfully built dd7058a2620a |
29-Sep-2019 17:04:46 | Successfully tagged clowder/pyclowder:latest |
29-Sep-2019 17:04:46 | Sending build context to Docker daemon 265.7kB |
29-Sep-2019 17:04:46 | |
29-Sep-2019 17:04:46 | Step 1/7 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:46 | Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
29-Sep-2019 17:04:46 | ---> dd7058a2620a |
29-Sep-2019 17:04:46 | Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 7a85fa61aaf7 |
29-Sep-2019 17:04:46 | Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> d31de910b23f |
29-Sep-2019 17:04:46 | Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> a127f8631bf4 |
29-Sep-2019 17:04:46 | Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 31a54614f4f4 |
29-Sep-2019 17:04:46 | Step 7/7 : ONBUILD ADD . /home/clowder/ |
29-Sep-2019 17:04:46 | ---> Using cache |
29-Sep-2019 17:04:46 | ---> 85b511f58633 |
29-Sep-2019 17:04:46 | Successfully built 85b511f58633 |
29-Sep-2019 17:04:47 | Successfully tagged clowder/pyclowder:onbuild |
29-Sep-2019 17:04:47 | Sending build context to Docker daemon 12.8kB |
29-Sep-2019 17:04:47 | |
29-Sep-2019 17:04:47 | Step 1/6 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:47 | Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild |
29-Sep-2019 17:04:47 | # Executing 5 build triggers |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 4c2524540888 |
29-Sep-2019 17:04:47 | Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 845cdb818202 |
29-Sep-2019 17:04:47 | Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> ced1525ab9d4 |
29-Sep-2019 17:04:47 | Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> e12ec7dd47a4 |
29-Sep-2019 17:04:47 | Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> c018300631b2 |
29-Sep-2019 17:04:47 | Successfully built c018300631b2 |
29-Sep-2019 17:04:47 | Successfully tagged clowder/extractors-binary-preview:onbuild |
29-Sep-2019 17:04:47 | Sending build context to Docker daemon 6.656kB |
29-Sep-2019 17:04:47 | |
29-Sep-2019 17:04:47 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:47 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
29-Sep-2019 17:04:47 | ---> dd7058a2620a |
29-Sep-2019 17:04:47 | Step 3/11 : ENV EXTRACTION_FUNC="" |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 5ec3bcc0f133 |
29-Sep-2019 17:04:47 | Step 4/11 : ENV EXTRACTION_MODULE="" |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 8f744f833e01 |
29-Sep-2019 17:04:47 | Step 5/11 : COPY simple_extractor.py . |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 54ad9dd74034 |
29-Sep-2019 17:04:47 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 15386f72c1de |
29-Sep-2019 17:04:47 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 1d3529747c3f |
29-Sep-2019 17:04:47 | Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 6e906ddef1eb |
29-Sep-2019 17:04:47 | Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> d455c2a07b85 |
29-Sep-2019 17:04:47 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> fd992774021c |
29-Sep-2019 17:04:47 | Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> e1c0f4dce633 |
29-Sep-2019 17:04:47 | Successfully built e1c0f4dce633 |
29-Sep-2019 17:04:47 | Successfully tagged clowder/extractors-simple-extractor:onbuild |
29-Sep-2019 17:04:47 | Sending build context to Docker daemon 13.31kB |
29-Sep-2019 17:04:47 | |
29-Sep-2019 17:04:47 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:47 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
29-Sep-2019 17:04:47 | ---> dd7058a2620a |
29-Sep-2019 17:04:47 | Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 7e0269fcd318 |
29-Sep-2019 17:04:47 | Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> eb86c380f98c |
29-Sep-2019 17:04:47 | Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 7fd806a6b3c4 |
29-Sep-2019 17:04:47 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 2583e497a0e8 |
29-Sep-2019 17:04:47 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> f2b28b70c6d5 |
29-Sep-2019 17:04:47 | Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> a99f1906b661 |
29-Sep-2019 17:04:47 | Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> ba5f0a968440 |
29-Sep-2019 17:04:47 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> a15d3dfaaf94 |
29-Sep-2019 17:04:47 | Step 11/11 : CMD python r_extractor.py |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 0dc22bddc90f |
29-Sep-2019 17:04:47 | Successfully built 0dc22bddc90f |
29-Sep-2019 17:04:47 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
29-Sep-2019 17:04:47 | Sending build context to Docker daemon 267.8kB |
29-Sep-2019 17:04:47 | |
29-Sep-2019 17:04:47 | Step 1/10 : FROM ubuntu:16.04 |
29-Sep-2019 17:04:47 | ---> 657d80a6401d |
29-Sep-2019 17:04:47 | Step 2/10 : ARG PYTHON_VERSION="2.7" |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 7d071fce2822 |
29-Sep-2019 17:04:47 | Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> f6fbf60fc5c0 |
29-Sep-2019 17:04:47 | Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> f1bc58800597 |
29-Sep-2019 17:04:47 | Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 597c3f5e2968 |
29-Sep-2019 17:04:47 | Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 21751dcbe393 |
29-Sep-2019 17:04:47 | Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 9cb08c3eb887 |
29-Sep-2019 17:04:47 | Step 8/10 : WORKDIR /home/clowder |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 56066ba6ea87 |
29-Sep-2019 17:04:47 | Step 9/10 : COPY notifications.json /home/clowder/ |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 1708a9940a2a |
29-Sep-2019 17:04:47 | Step 10/10 : CMD python "./${MAIN_SCRIPT}" |
29-Sep-2019 17:04:47 | ---> Using cache |
29-Sep-2019 17:04:47 | ---> 4e0a5b6aa8a3 |
29-Sep-2019 17:04:47 | Successfully built 4e0a5b6aa8a3 |
29-Sep-2019 17:04:47 | Successfully tagged clowder/pyclowder-python3:latest |
29-Sep-2019 17:04:47 | Sending build context to Docker daemon 265.7kB |
29-Sep-2019 17:04:47 | |
29-Sep-2019 17:04:48 | Step 1/7 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:48 | Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
29-Sep-2019 17:04:48 | ---> 4e0a5b6aa8a3 |
29-Sep-2019 17:04:48 | Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 66ecf93f77a4 |
29-Sep-2019 17:04:48 | Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> e466cf6346ef |
29-Sep-2019 17:04:48 | Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> ad4c2be545c8 |
29-Sep-2019 17:04:48 | Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> b31c60631fa8 |
29-Sep-2019 17:04:48 | Step 7/7 : ONBUILD ADD . /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 1027a3d0825a |
29-Sep-2019 17:04:48 | Successfully built 1027a3d0825a |
29-Sep-2019 17:04:48 | Successfully tagged clowder/pyclowder-python3:onbuild |
29-Sep-2019 17:04:48 | Sending build context to Docker daemon 12.8kB |
29-Sep-2019 17:04:48 | |
29-Sep-2019 17:04:48 | Step 1/6 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:48 | Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild |
29-Sep-2019 17:04:48 | # Executing 5 build triggers |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> b3f1064f0640 |
29-Sep-2019 17:04:48 | Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 6b0049c301d4 |
29-Sep-2019 17:04:48 | Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 6123aff22e13 |
29-Sep-2019 17:04:48 | Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> ec70c8469c80 |
29-Sep-2019 17:04:48 | Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> f566c3ef3474 |
29-Sep-2019 17:04:48 | Successfully built f566c3ef3474 |
29-Sep-2019 17:04:48 | Successfully tagged clowder/extractors-binary-preview-python3:onbuild |
29-Sep-2019 17:04:48 | Sending build context to Docker daemon 6.656kB |
29-Sep-2019 17:04:48 | |
29-Sep-2019 17:04:48 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:48 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
29-Sep-2019 17:04:48 | ---> 4e0a5b6aa8a3 |
29-Sep-2019 17:04:48 | Step 3/11 : ENV EXTRACTION_FUNC="" |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 3ae37fd01aa4 |
29-Sep-2019 17:04:48 | Step 4/11 : ENV EXTRACTION_MODULE="" |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> b81bd25614b6 |
29-Sep-2019 17:04:48 | Step 5/11 : COPY simple_extractor.py . |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 973592e3e7e2 |
29-Sep-2019 17:04:48 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 30739eac93b0 |
29-Sep-2019 17:04:48 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 779d1a7c719b |
29-Sep-2019 17:04:48 | Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 5ccfda9c9dcc |
29-Sep-2019 17:04:48 | Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> e6754308238b |
29-Sep-2019 17:04:48 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 6bb00e7c3b74 |
29-Sep-2019 17:04:48 | Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 2d62b6b3d71c |
29-Sep-2019 17:04:48 | Successfully built 2d62b6b3d71c |
29-Sep-2019 17:04:48 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
29-Sep-2019 17:04:48 | Sending build context to Docker daemon 13.31kB |
29-Sep-2019 17:04:48 | |
29-Sep-2019 17:04:48 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:48 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
29-Sep-2019 17:04:48 | ---> 4e0a5b6aa8a3 |
29-Sep-2019 17:04:48 | Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 63579f8b2a95 |
29-Sep-2019 17:04:48 | Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> b188d7e98305 |
29-Sep-2019 17:04:48 | Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> ca0d6f759af1 |
29-Sep-2019 17:04:48 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 2febded5a55d |
29-Sep-2019 17:04:48 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 03ddd40d9f7a |
29-Sep-2019 17:04:48 | Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 973620bd7ad3 |
29-Sep-2019 17:04:48 | Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> e000d0bef514 |
29-Sep-2019 17:04:48 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> c9e4c02a38dc |
29-Sep-2019 17:04:48 | Step 11/11 : CMD python r_extractor.py |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> ffb662004f5f |
29-Sep-2019 17:04:48 | Successfully built ffb662004f5f |
29-Sep-2019 17:04:48 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
29-Sep-2019 17:04:48 | Sending build context to Docker daemon 9.216kB |
29-Sep-2019 17:04:48 | |
29-Sep-2019 17:04:48 | Step 1/3 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:48 | Step 2/3 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild |
29-Sep-2019 17:04:48 | # Executing 5 build triggers |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> 7bfedae08fe2 |
29-Sep-2019 17:04:48 | Step 3/3 : ENV MAIN_SCRIPT="wordcount.py" |
29-Sep-2019 17:04:48 | ---> Using cache |
29-Sep-2019 17:04:48 | ---> f3d37a75c60d |
29-Sep-2019 17:04:48 | Successfully built f3d37a75c60d |
29-Sep-2019 17:04:48 | Successfully tagged clowder/extractors-wordcount:latest |
29-Sep-2019 17:04:48 | Sending build context to Docker daemon 5.12kB |
29-Sep-2019 17:04:48 | |
29-Sep-2019 17:04:49 | Step 1/4 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:49 | Step 2/4 : FROM clowder/extractors-simple-extractor${PYCLOWDER_PYTHON}:onbuild |
29-Sep-2019 17:04:49 | # Executing 5 build triggers |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> d8bc2bd30019 |
29-Sep-2019 17:04:49 | Step 3/4 : ENV EXTRACTION_FUNC="wordcount" |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> e4ee5dc93504 |
29-Sep-2019 17:04:49 | Step 4/4 : ENV EXTRACTION_MODULE="wordcount" |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> c88d1c3b8999 |
29-Sep-2019 17:04:49 | Successfully built c88d1c3b8999 |
29-Sep-2019 17:04:49 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
29-Sep-2019 17:04:49 | Sending build context to Docker daemon 5.12kB |
29-Sep-2019 17:04:49 | |
29-Sep-2019 17:04:49 | Step 1/3 : ARG PYCLOWDER_PYTHON="" |
29-Sep-2019 17:04:49 | Step 2/3 : FROM clowder/extractors-simple-r-extractor${PYCLOWDER_PYTHON}:onbuild |
29-Sep-2019 17:04:49 | # Executing 5 build triggers |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> dbbfd93ab5e7 |
29-Sep-2019 17:04:49 | Step 3/3 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> f17ed902f072 |
29-Sep-2019 17:04:49 | Successfully built f17ed902f072 |
29-Sep-2019 17:04:49 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
29-Sep-2019 17:04:49 | Sending build context to Docker daemon 8.192kB |
29-Sep-2019 17:04:49 | |
29-Sep-2019 17:04:49 | Step 1/7 : FROM python:3.5 |
29-Sep-2019 17:04:49 | ---> 67f4589d3c88 |
29-Sep-2019 17:04:49 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> 780c06a38965 |
29-Sep-2019 17:04:49 | Step 3/7 : EXPOSE 9999 |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> e35b498b2fe3 |
29-Sep-2019 17:04:49 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> bc90da966d93 |
29-Sep-2019 17:04:49 | Step 5/7 : WORKDIR /src |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> c4f7ae366418 |
29-Sep-2019 17:04:49 | Step 6/7 : COPY monitor.py /src/ |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> f20e0c8c8326 |
29-Sep-2019 17:04:49 | Step 7/7 : CMD python monitor.py |
29-Sep-2019 17:04:49 | ---> Using cache |
29-Sep-2019 17:04:49 | ---> ea2efd4a43d1 |
29-Sep-2019 17:04:49 | Successfully built ea2efd4a43d1 |
29-Sep-2019 17:04:49 | Successfully tagged clowder/extractors-monitor:latest |
29-Sep-2019 17:04:49 | Finished task 'docker build and push' with result: Success |
29-Sep-2019 17:04:49 | Running post build plugin 'Docker Container Cleanup' |
29-Sep-2019 17:04:49 | Running post build plugin 'NCover Results Collector' |
29-Sep-2019 17:04:49 | Running post build plugin 'Clover Results Collector' |
29-Sep-2019 17:04:49 | Running post build plugin 'npm Cache Cleanup' |
29-Sep-2019 17:04:49 | Running post build plugin 'Artifact Copier' |
29-Sep-2019 17:04:49 | Finalising the build... |
29-Sep-2019 17:04:49 | Stopping timer. |
29-Sep-2019 17:04:49 | Build CATS-PYC-JOB1-26 completed. |
29-Sep-2019 17:04:49 | Running on server: post build plugin 'NCover Results Collector' |
29-Sep-2019 17:04:49 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
29-Sep-2019 17:04:49 | Running on server: post build plugin 'Clover Delta Calculator' |
29-Sep-2019 17:04:49 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
29-Sep-2019 17:04:49 | All post build plugins have finished |
29-Sep-2019 17:04:49 | Generating build results summary... |
29-Sep-2019 17:04:49 | Saving build results to disk... |
29-Sep-2019 17:04:49 | Logging substituted variables... |
29-Sep-2019 17:04:49 | Indexing build results... |
29-Sep-2019 17:04:49 | Finished building CATS-PYC-JOB1-26. |