Next Generation of pyClowder

Build: #1 failed

Job: Default Job failed

Stages & jobs

  1. Default Stage

Build log

The build generated 782 lines of output. Download or view full build log.

31-Jul-2019 15:43:34 Build Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job #1 (CATS-PYC2100-JOB1-1) started building on agent buildserver-2.os.ncsa.edu
31-Jul-2019 15:43:34 Remote agent on host buildserver-2.os.ncsa.edu
31-Jul-2019 15:43:34 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1
31-Jul-2019 15:43:34 Executing build Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job #1 (CATS-PYC2100-JOB1-1)
31-Jul-2019 15:43:34 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
31-Jul-2019 15:43:34 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1
31-Jul-2019 15:43:34 Updating source code to revision: 616e22d71839f4d365c09e2fc0c5dd508df0850d
31-Jul-2019 15:43:34 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1/.git'.
31-Jul-2019 15:43:34 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1/.git/
31-Jul-2019 15:43:35 Fetching 'refs/heads/hotfix/extractor-info.json' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch.
31-Jul-2019 15:43:35 Warning: Permanently added '[127.0.0.1]:34449' (RSA) to the list of known hosts.
31-Jul-2019 15:43:36 From ssh://127.0.0.1:34449/cats/pyclowder2
31-Jul-2019 15:43:36 * [new branch]      hotfix/extractor-info.json -> hotfix/extractor-info.json
31-Jul-2019 15:43:36 Checking out revision 616e22d71839f4d365c09e2fc0c5dd508df0850d.
31-Jul-2019 15:43:36 Switched to branch 'hotfix/extractor-info.json'
31-Jul-2019 15:43:36 Updated source code to revision: 616e22d71839f4d365c09e2fc0c5dd508df0850d
31-Jul-2019 15:43:36 Finished task 'Checkout Default Repository' with result: Success
31-Jul-2019 15:43:36 Running pre-build action: VCS Version Collector
31-Jul-2019 15:43:36 Starting task 'python 2 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
31-Jul-2019 15:43:36
Beginning to execute external process for build 'Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job #1 (CATS-PYC2100-JOB1-1)'
... running command line:
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31-Jul-2019 15:43:39 New python executable in /tmp/virtualenv/pyclowder2-p2/bin/python2
31-Jul-2019 15:43:39 Also creating executable in /tmp/virtualenv/pyclowder2-p2/bin/python
31-Jul-2019 15:43:43 Installing setuptools, pkg_resources, pip, wheel...done.
31-Jul-2019 15:43:43 Running virtualenv with interpreter /usr/bin/python2
31-Jul-2019 15:43:44 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
31-Jul-2019 15:43:44 Collecting enum34==1.1.6 (from -r requirements.txt (line 1))
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31-Jul-2019 15:43:44 Collecting pika==1.0.0 (from -r requirements.txt (line 2))
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31-Jul-2019 15:43:44 Collecting PyYAML==5.1 (from -r requirements.txt (line 3))
31-Jul-2019 15:43:44 Collecting requests==2.21.0 (from -r requirements.txt (line 4))
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31-Jul-2019 15:43:45 Collecting wheel==0.33.1 (from -r requirements.txt (line 5))
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31-Jul-2019 15:43:45 Collecting urllib3==1.24.1 (from -r requirements.txt (line 6))
31-Jul-2019 15:43:45   Using cached https://files.pythonhosted.org/packages/62/00/ee1d7de624db8ba7090d1226aebefab96a2c71cd5cfa7629d6ad3f61b79e/urllib3-1.24.1-py2.py3-none-any.whl
31-Jul-2019 15:43:45 Collecting pytest==4.3.1 (from -r requirements.txt (line 7))
31-Jul-2019 15:43:45   Using cached https://files.pythonhosted.org/packages/c8/52/c455e718f19e4fd7126c81b4910ca2431ded6c28b97e36a1a1f5e5ef7247/pytest-4.3.1-py2.py3-none-any.whl
31-Jul-2019 15:43:45 Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 8))
31-Jul-2019 15:43:45 Collecting certifi>=2017.4.17 (from requests==2.21.0->-r requirements.txt (line 4))
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31-Jul-2019 15:43:46 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.21.0->-r requirements.txt (line 4))
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31-Jul-2019 15:43:46 Collecting idna<2.9,>=2.5 (from requests==2.21.0->-r requirements.txt (line 4))
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31-Jul-2019 15:43:46 Collecting py>=1.5.0 (from pytest==4.3.1->-r requirements.txt (line 7))
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31-Jul-2019 15:43:46 Requirement already satisfied: setuptools in /tmp/virtualenv/pyclowder2-p2/lib/python2.7/site-packages (from pytest==4.3.1->-r requirements.txt (line 7)) (41.0.1)
31-Jul-2019 15:43:46 Collecting six>=1.10.0 (from pytest==4.3.1->-r requirements.txt (line 7))
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31-Jul-2019 15:43:46 Collecting pathlib2>=2.2.0; python_version < "3.6" (from pytest==4.3.1->-r requirements.txt (line 7))
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31-Jul-2019 15:43:46 Collecting pluggy>=0.7 (from pytest==4.3.1->-r requirements.txt (line 7))
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31-Jul-2019 15:43:47 Collecting attrs>=17.4.0 (from pytest==4.3.1->-r requirements.txt (line 7))
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31-Jul-2019 15:43:47 Collecting more-itertools<6.0.0,>=4.0.0; python_version <= "2.7" (from pytest==4.3.1->-r requirements.txt (line 7))
31-Jul-2019 15:43:47   Using cached https://files.pythonhosted.org/packages/2f/9d/dcfe59e213093695f108508af1214cf9cd95cc5489e46877ec5cb56369e5/more_itertools-5.0.0-py2-none-any.whl
31-Jul-2019 15:43:47 Collecting funcsigs; python_version < "3.0" (from pytest==4.3.1->-r requirements.txt (line 7))
31-Jul-2019 15:43:47   Using cached https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl
31-Jul-2019 15:43:47 Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 8))
31-Jul-2019 15:43:47   Using cached https://files.pythonhosted.org/packages/42/3f/669429ce58de2c22d8d2c542752e137ec4b9885fff398d3eceb1a7f5acb4/pep8-1.7.1-py2.py3-none-any.whl
31-Jul-2019 15:43:47 Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 8))
31-Jul-2019 15:43:47 Collecting scandir; python_version < "3.5" (from pathlib2>=2.2.0; python_version < "3.6"->pytest==4.3.1->-r requirements.txt (line 7))
31-Jul-2019 15:43:47 Collecting importlib-metadata>=0.12 (from pluggy>=0.7->pytest==4.3.1->-r requirements.txt (line 7))
31-Jul-2019 15:43:47   Downloading https://files.pythonhosted.org/packages/ad/aa/25fcbded2ab4ed4ff3071d1e000cd4f8f9c65653d2d7157dd105a8e81d42/importlib_metadata-0.19-py2.py3-none-any.whl
31-Jul-2019 15:43:47 Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8))
31-Jul-2019 15:43:47   Downloading https://files.pythonhosted.org/packages/9a/73/5be9d235327b3770c330bed707766c8885e8157577db85f11b874b26da34/execnet-1.6.1-py2.py3-none-any.whl
31-Jul-2019 15:43:47 Collecting contextlib2; python_version < "3" (from importlib-metadata>=0.12->pluggy>=0.7->pytest==4.3.1->-r requirements.txt (line 7))
31-Jul-2019 15:43:47   Using cached https://files.pythonhosted.org/packages/a2/71/8273a7eeed0aff6a854237ab5453bc9aa67deb49df4832801c21f0ff3782/contextlib2-0.5.5-py2.py3-none-any.whl
31-Jul-2019 15:43:47 Collecting zipp>=0.5 (from importlib-metadata>=0.12->pluggy>=0.7->pytest==4.3.1->-r requirements.txt (line 7))
31-Jul-2019 15:43:47   Downloading https://files.pythonhosted.org/packages/da/bd/1a5fdf15aa44231fd09f63ecf175b60f057ae37ec65b343bb009364923f3/zipp-0.5.2-py2.py3-none-any.whl
31-Jul-2019 15:43:47 Collecting configparser>=3.5; python_version < "3" (from importlib-metadata>=0.12->pluggy>=0.7->pytest==4.3.1->-r requirements.txt (line 7))
31-Jul-2019 15:43:47   Using cached https://files.pythonhosted.org/packages/ba/05/6c96328e92e625fc31445d24d75a2c92ef9ba34fc5b037fe69693c362a0d/configparser-3.7.4-py2.py3-none-any.whl
31-Jul-2019 15:43:47 Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8))
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31-Jul-2019 15:43:48 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, wheel, atomicwrites, py, six, scandir, pathlib2, contextlib2, zipp, configparser, importlib-metadata, pluggy, attrs, more-itertools, funcsigs, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8
31-Jul-2019 15:43:48   Found existing installation: wheel 0.33.4
31-Jul-2019 15:43:48     Uninstalling wheel-0.33.4:
31-Jul-2019 15:43:48       Successfully uninstalled wheel-0.33.4
31-Jul-2019 15:43:48 Successfully installed PyYAML-5.1 apipkg-1.5 atomicwrites-1.3.0 attrs-19.1.0 certifi-2019.6.16 chardet-3.0.4 configparser-3.7.4 contextlib2-0.5.5 enum34-1.1.6 execnet-1.6.1 funcsigs-1.0.2 idna-2.8 importlib-metadata-0.19 more-itertools-5.0.0 pathlib2-2.3.4 pep8-1.7.1 pika-1.0.0 pluggy-0.12.0 py-1.8.0 pytest-4.3.1 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.21.0 scandir-1.10.0 six-1.12.0 urllib3-1.24.1 wheel-0.33.1 zipp-0.5.2
31-Jul-2019 15:43:49 ============================= test session starts ==============================
31-Jul-2019 15:43:49 platform linux2 -- Python 2.7.12, pytest-4.3.1, py-1.8.0, pluggy-0.12.0
31-Jul-2019 15:43:49 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1, inifile: setup.cfg
31-Jul-2019 15:43:49 plugins: pep8-1.0.6
31-Jul-2019 15:43:49 collected 20 items
31-Jul-2019 15:43:49
31-Jul-2019 15:43:49 setup.py .
31-Jul-2019 15:43:49 contrib/monitor/monitor.py .
31-Jul-2019 15:43:49 docs/source/conf.py .
31-Jul-2019 15:43:49 pyclowder/__init__.py .
31-Jul-2019 15:43:49 pyclowder/client.py .
31-Jul-2019 15:43:49 pyclowder/collections.py .
31-Jul-2019 15:43:49 pyclowder/connectors.py .
31-Jul-2019 15:43:49 pyclowder/datasets.py .
31-Jul-2019 15:43:49 pyclowder/extractors.py .
31-Jul-2019 15:43:49 pyclowder/files.py .
31-Jul-2019 15:43:50 pyclowder/geostreams.py .
31-Jul-2019 15:43:50 pyclowder/sections.py .
31-Jul-2019 15:43:50 pyclowder/utils.py .
31-Jul-2019 15:43:50 sample-extractors/binary-preview/binary_extractor.py .
31-Jul-2019 15:43:50 sample-extractors/echo/echo.py .
31-Jul-2019 15:43:50 sample-extractors/simple-extractor/simple_extractor.py .
31-Jul-2019 15:43:50 sample-extractors/simple-r-extractor/r_extractor.py .
31-Jul-2019 15:43:50 sample-extractors/wordcount/wordcount.py .
31-Jul-2019 15:43:50 sample-extractors/wordcount-simple-extractor/wordcount.py .
31-Jul-2019 15:43:50 tests/clientTest.py .
31-Jul-2019 15:43:50
31-Jul-2019 15:43:50 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1/test-reports/results-p2.xml -
31-Jul-2019 15:43:50 ========================== 20 passed in 0.42 seconds ===========================
31-Jul-2019 15:43:50 Finished task 'python 2 - pytest' with result: Success
31-Jul-2019 15:43:50 Starting task 'python 3 - pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
31-Jul-2019 15:43:50
Beginning to execute external process for build 'Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job #1 (CATS-PYC2100-JOB1-1)'
... running command line:
/home/bamboo/bamboo-agent-home/temp/CATS-PYC2100-JOB1-1-ScriptBuildTask-1100121754331944268.sh
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1
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31-Jul-2019 15:43:50 Already using interpreter /usr/bin/python3
31-Jul-2019 15:43:50 Using base prefix '/usr'
31-Jul-2019 15:43:50 New python executable in /tmp/virtualenv/pyclowder2-p3/bin/python3
31-Jul-2019 15:43:50 Also creating executable in /tmp/virtualenv/pyclowder2-p3/bin/python
31-Jul-2019 15:43:54 Installing setuptools, pkg_resources, pip, wheel...done.
31-Jul-2019 15:43:54 Collecting enum34==1.1.6 (from -r requirements.txt (line 1))
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31-Jul-2019 15:43:54 Collecting pika==1.0.0 (from -r requirements.txt (line 2))
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31-Jul-2019 15:43:55 Collecting PyYAML==5.1 (from -r requirements.txt (line 3))
31-Jul-2019 15:43:55 Collecting requests==2.21.0 (from -r requirements.txt (line 4))
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31-Jul-2019 15:43:55 Collecting wheel==0.33.1 (from -r requirements.txt (line 5))
31-Jul-2019 15:43:55   Using cached https://files.pythonhosted.org/packages/96/ba/a4702cbb6a3a485239fbe9525443446203f00771af9ac000fa3ef2788201/wheel-0.33.1-py2.py3-none-any.whl
31-Jul-2019 15:43:55 Collecting urllib3==1.24.1 (from -r requirements.txt (line 6))
31-Jul-2019 15:43:55   Using cached https://files.pythonhosted.org/packages/62/00/ee1d7de624db8ba7090d1226aebefab96a2c71cd5cfa7629d6ad3f61b79e/urllib3-1.24.1-py2.py3-none-any.whl
31-Jul-2019 15:43:55 Collecting pytest==4.3.1 (from -r requirements.txt (line 7))
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31-Jul-2019 15:43:55 Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 8))
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31-Jul-2019 15:43:55 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.21.0->-r requirements.txt (line 4))
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31-Jul-2019 15:43:55 Collecting pathlib2>=2.2.0; python_version < "3.6" (from pytest==4.3.1->-r requirements.txt (line 7))
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31-Jul-2019 15:43:55 Requirement already satisfied: setuptools in /tmp/virtualenv/pyclowder2-p3/lib/python3.5/site-packages (from pytest==4.3.1->-r requirements.txt (line 7)) (41.0.1)
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31-Jul-2019 15:43:55 Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 8))
31-Jul-2019 15:43:56 Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 8))
31-Jul-2019 15:43:56   Using cached https://files.pythonhosted.org/packages/42/3f/669429ce58de2c22d8d2c542752e137ec4b9885fff398d3eceb1a7f5acb4/pep8-1.7.1-py2.py3-none-any.whl
31-Jul-2019 15:43:56 Collecting importlib-metadata>=0.12 (from pluggy>=0.7->pytest==4.3.1->-r requirements.txt (line 7))
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31-Jul-2019 15:43:56 Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8))
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31-Jul-2019 15:43:56 Collecting zipp>=0.5 (from importlib-metadata>=0.12->pluggy>=0.7->pytest==4.3.1->-r requirements.txt (line 7))
31-Jul-2019 15:43:56   Using cached https://files.pythonhosted.org/packages/da/bd/1a5fdf15aa44231fd09f63ecf175b60f057ae37ec65b343bb009364923f3/zipp-0.5.2-py2.py3-none-any.whl
31-Jul-2019 15:43:56 Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8))
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31-Jul-2019 15:43:56 Installing collected packages: enum34, pika, PyYAML, idna, certifi, urllib3, chardet, requests, wheel, py, atomicwrites, zipp, importlib-metadata, pluggy, six, pathlib2, more-itertools, attrs, pytest, apipkg, execnet, pytest-cache, pep8, pytest-pep8
31-Jul-2019 15:43:56   Found existing installation: wheel 0.33.4
31-Jul-2019 15:43:56     Uninstalling wheel-0.33.4:
31-Jul-2019 15:43:56       Successfully uninstalled wheel-0.33.4
31-Jul-2019 15:43:57 Successfully installed PyYAML-5.1 apipkg-1.5 atomicwrites-1.3.0 attrs-19.1.0 certifi-2019.6.16 chardet-3.0.4 enum34-1.1.6 execnet-1.6.1 idna-2.8 importlib-metadata-0.19 more-itertools-7.2.0 pathlib2-2.3.4 pep8-1.7.1 pika-1.0.0 pluggy-0.12.0 py-1.8.0 pytest-4.3.1 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.21.0 six-1.12.0 urllib3-1.24.1 wheel-0.33.1 zipp-0.5.2
31-Jul-2019 15:43:58 ============================= test session starts ==============================
31-Jul-2019 15:43:58 platform linux -- Python 3.5.2, pytest-4.3.1, py-1.8.0, pluggy-0.12.0
31-Jul-2019 15:43:58 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1, inifile: setup.cfg
31-Jul-2019 15:43:58 plugins: pep8-1.0.6
31-Jul-2019 15:43:58 collected 20 items
31-Jul-2019 15:43:58
31-Jul-2019 15:43:58 setup.py .
31-Jul-2019 15:43:58 contrib/monitor/monitor.py .
31-Jul-2019 15:43:58 docs/source/conf.py .
31-Jul-2019 15:43:58 pyclowder/__init__.py .
31-Jul-2019 15:43:58 pyclowder/client.py .
31-Jul-2019 15:43:58 pyclowder/collections.py .
31-Jul-2019 15:43:58 pyclowder/connectors.py .
31-Jul-2019 15:43:58 pyclowder/datasets.py .
31-Jul-2019 15:43:58 pyclowder/extractors.py .
31-Jul-2019 15:43:58 pyclowder/files.py .
31-Jul-2019 15:43:58 pyclowder/geostreams.py .
31-Jul-2019 15:43:58 pyclowder/sections.py .
31-Jul-2019 15:43:58 pyclowder/utils.py .
31-Jul-2019 15:43:58 sample-extractors/binary-preview/binary_extractor.py .
31-Jul-2019 15:43:58 sample-extractors/echo/echo.py .
31-Jul-2019 15:43:58 sample-extractors/simple-extractor/simple_extractor.py .
31-Jul-2019 15:43:58 sample-extractors/simple-r-extractor/r_extractor.py .
31-Jul-2019 15:43:58 sample-extractors/wordcount/wordcount.py .
31-Jul-2019 15:43:58 sample-extractors/wordcount-simple-extractor/wordcount.py .
31-Jul-2019 15:43:58 tests/clientTest.py .
31-Jul-2019 15:43:58
31-Jul-2019 15:43:58 - generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1/test-reports/results-p3.xml -
31-Jul-2019 15:43:58 ========================== 20 passed in 0.53 seconds ===========================
31-Jul-2019 15:43:58 Finished task 'python 3 - pytest' with result: Success
31-Jul-2019 15:43:58 Starting task 'docker build' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
31-Jul-2019 15:43:58
Beginning to execute external process for build 'Clowder - pyclowder2 - hotfix-extractor-info.json - Default Job #1 (CATS-PYC2100-JOB1-1)'
... running command line:
/bin/sh docker.sh
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1
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bamboo_repository_name=pyclowder2
bamboo_buildFailed=false
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_branch=hotfix/extractor-info.json
bamboo_repository_173735954_git_username=
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_repository_git_username=
bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13
bamboo_planRepository_branchDisplayName=hotfix/extractor-info.json
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planRepository_1_type=bbserver
bamboo_planRepository_branchName=hotfix/extractor-info.json
bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7
bamboo_capability_system_hostname=buildserver-1
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_plan_storageTag=plan-173604882
bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_planRepository_1_username=
bamboo_planRepository_type=bbserver
bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache
bamboo_repository_173735954_revision_number=616e22d71839f4d365c09e2fc0c5dd508df0850d
bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
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bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1
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bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git
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bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
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bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_repository_173735954_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git
bamboo_planRepository_1_branchName=hotfix/extractor-info.json
31-Jul-2019 15:43:59 Sending build context to Docker daemon  283.6kB
31-Jul-2019 15:43:59
31-Jul-2019 15:43:59 Step 1/10 : FROM ubuntu:16.04
31-Jul-2019 15:43:59 16.04: Pulling from library/ubuntu
31-Jul-2019 15:43:59 f7277927d38a: Pulling fs layer
31-Jul-2019 15:43:59 8d3eac894db4: Pulling fs layer
31-Jul-2019 15:43:59 edf72af6d627: Pulling fs layer
31-Jul-2019 15:43:59 3e4f86211d23: Pulling fs layer
31-Jul-2019 15:43:59 3e4f86211d23: Waiting
31-Jul-2019 15:43:59 edf72af6d627: Verifying Checksum
31-Jul-2019 15:43:59 edf72af6d627: Download complete
31-Jul-2019 15:43:59 8d3eac894db4: Verifying Checksum
31-Jul-2019 15:43:59 8d3eac894db4: Download complete
31-Jul-2019 15:43:59 3e4f86211d23: Download complete
31-Jul-2019 15:44:00 f7277927d38a: Verifying Checksum
31-Jul-2019 15:44:00 f7277927d38a: Download complete
31-Jul-2019 15:44:02 f7277927d38a: Pull complete
31-Jul-2019 15:44:03 8d3eac894db4: Pull complete
31-Jul-2019 15:44:04 edf72af6d627: Pull complete
31-Jul-2019 15:44:04 3e4f86211d23: Pull complete
31-Jul-2019 15:44:04 Digest: sha256:97b54e5692c27072234ff958a7442dde4266af21e7b688e7fca5dc5acc8ed7d9
31-Jul-2019 15:44:05 Status: Downloaded newer image for ubuntu:16.04
31-Jul-2019 15:44:05 ---> 5e13f8dd4c1a
31-Jul-2019 15:44:05 Step 2/10 : ARG PYTHON_VERSION="2.7"
31-Jul-2019 15:44:05 ---> Running in e6ac9f7797b3
31-Jul-2019 15:44:05 Removing intermediate container e6ac9f7797b3
31-Jul-2019 15:44:05 ---> fbe33b99f873
31-Jul-2019 15:44:05 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION}     RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
31-Jul-2019 15:44:06 ---> Running in 8a93f3584bbd
31-Jul-2019 15:44:06 Removing intermediate container 8a93f3584bbd
31-Jul-2019 15:44:06 ---> 8a814b3435ee
31-Jul-2019 15:44:06 Step 4/10 : RUN apt-get -q -q update     && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl     && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi     && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py     && python /tmp/get-pip.py     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py
31-Jul-2019 15:44:07 ---> Running in 8ef91fe0fab8
31-Jul-2019 15:44:13 Reading package lists...
31-Jul-2019 15:44:13 Building dependency tree...
31-Jul-2019 15:44:13 Reading state information...
31-Jul-2019 15:44:13 The following additional packages will be installed:
31-Jul-2019 15:44:13   libasn1-8-heimdal libcurl3-gnutls libexpat1 libffi6 libgmp10 libgnutls30
31-Jul-2019 15:44:13   libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal
31-Jul-2019 15:44:13   libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libk5crypto3
31-Jul-2019 15:44:13   libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2
31-Jul-2019 15:44:13   libnettle6 libp11-kit0 libpython2.7-minimal libpython2.7-stdlib
31-Jul-2019 15:44:13   libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0
31-Jul-2019 15:44:13   libssl1.0.0 libtasn1-6 libwind0-heimdal mime-support python2.7-minimal
31-Jul-2019 15:44:13 Suggested packages:
31-Jul-2019 15:44:13   gnutls-bin krb5-doc krb5-user python2.7-doc binutils binfmt-support
31-Jul-2019 15:44:13 Recommended packages:
31-Jul-2019 15:44:13   ca-certificates krb5-locales libsasl2-modules file
31-Jul-2019 15:44:13 The following NEW packages will be installed:
31-Jul-2019 15:44:13   curl libasn1-8-heimdal libcurl3-gnutls libexpat1 libffi6 libgmp10
31-Jul-2019 15:44:13   libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal
31-Jul-2019 15:44:13   libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal
31-Jul-2019 15:44:13   libidn11 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3
31-Jul-2019 15:44:13   libkrb5support0 libldap-2.4-2 libnettle6 libp11-kit0 libpython2.7-minimal
31-Jul-2019 15:44:13   libpython2.7-stdlib libroken18-heimdal librtmp1 libsasl2-2
31-Jul-2019 15:44:13   libsasl2-modules-db libsqlite3-0 libssl1.0.0 libtasn1-6 libwind0-heimdal
31-Jul-2019 15:44:13   mime-support python2.7 python2.7-minimal
31-Jul-2019 15:44:14 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded.
31-Jul-2019 15:44:14 Need to get 8433 kB of archives.
31-Jul-2019 15:44:14 After this operation, 30.8 MB of additional disk space will be used.
31-Jul-2019 15:44:14 Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [339 kB]
31-Jul-2019 15:44:14 Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.4 [1261 kB]
31-Jul-2019 15:44:14 Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.4 [71.4 kB]
31-Jul-2019 15:44:14 Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB]
31-Jul-2019 15:44:14 Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB]
31-Jul-2019 15:44:14 Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB]
31-Jul-2019 15:44:14 Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB]
31-Jul-2019 15:44:14 Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB]
31-Jul-2019 15:44:14 Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB]
31-Jul-2019 15:44:14 Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB]
31-Jul-2019 15:44:14 Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.5 [548 kB]
31-Jul-2019 15:44:14 Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1.2 [397 kB]
31-Jul-2019 15:44:14 Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.15 [1084 kB]
31-Jul-2019 15:44:15 Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB]
31-Jul-2019 15:44:15 Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB]
31-Jul-2019 15:44:15 Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB]
31-Jul-2019 15:44:15 Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2.1 [31.2 kB]
31-Jul-2019 15:44:15 Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2.1 [81.3 kB]
31-Jul-2019 15:44:15 Get:19 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B]
31-Jul-2019 15:44:15 Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2.1 [273 kB]
31-Jul-2019 15:44:15 Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2.1 [120 kB]
31-Jul-2019 15:44:15 Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB]
31-Jul-2019 15:44:15 Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB]
31-Jul-2019 15:44:15 Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB]
31-Jul-2019 15:44:15 Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB]
31-Jul-2019 15:44:15 Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB]
31-Jul-2019 15:44:15 Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB]
31-Jul-2019 15:44:15 Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB]
31-Jul-2019 15:44:15 Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14ubuntu0.1 [14.5 kB]
31-Jul-2019 15:44:15 Get:30 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14ubuntu0.1 [48.6 kB]
31-Jul-2019 15:44:15 Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.6 [160 kB]
31-Jul-2019 15:44:15 Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB]
31-Jul-2019 15:44:15 Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3-gnutls amd64 7.47.0-1ubuntu2.13 [184 kB]
31-Jul-2019 15:44:15 Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 curl amd64 7.47.0-1ubuntu2.13 [139 kB]
31-Jul-2019 15:44:15 Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.4 [1880 kB]
31-Jul-2019 15:44:15 Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.4 [224 kB]
31-Jul-2019 15:44:15 debconf: delaying package configuration, since apt-utils is not installed
31-Jul-2019 15:44:15 Fetched 8433 kB in 1s (5653 kB/s)
31-Jul-2019 15:44:16 Selecting previously unselected package libpython2.7-minimal:amd64.
31-Jul-2019 15:44:16 (Reading database ...
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31-Jul-2019 15:44:16 (Reading database ... 45%
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31-Jul-2019 15:44:16 (Reading database ... 60%
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31-Jul-2019 15:44:16 (Reading database ... 100%
31-Jul-2019 15:44:16 (Reading database ... 4777 files and directories currently installed.)
31-Jul-2019 15:44:16 Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ...
31-Jul-2019 15:44:16 Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ...
31-Jul-2019 15:44:17 Selecting previously unselected package python2.7-minimal.
31-Jul-2019 15:44:17 Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.4_amd64.deb ...
31-Jul-2019 15:44:17 Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ...
31-Jul-2019 15:44:18 Selecting previously unselected package libexpat1:amd64.
31-Jul-2019 15:44:18 Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.4_amd64.deb ...
31-Jul-2019 15:44:19 Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.4) ...
31-Jul-2019 15:44:20 Selecting previously unselected package libffi6:amd64.
31-Jul-2019 15:44:20 Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ...
31-Jul-2019 15:44:20 Unpacking libffi6:amd64 (3.2.1-4) ...
31-Jul-2019 15:44:22 Selecting previously unselected package libgmp10:amd64.
31-Jul-2019 15:44:22 Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ...
31-Jul-2019 15:44:22 Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ...
31-Jul-2019 15:44:24 Selecting previously unselected package libnettle6:amd64.
31-Jul-2019 15:44:24 Preparing to unpack .../libnettle6_3.2-1ubuntu0.16.04.1_amd64.deb ...
31-Jul-2019 15:44:24 Unpacking libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ...
31-Jul-2019 15:44:25 Selecting previously unselected package libhogweed4:amd64.
31-Jul-2019 15:44:25 Preparing to unpack .../libhogweed4_3.2-1ubuntu0.16.04.1_amd64.deb ...
31-Jul-2019 15:44:25 Unpacking libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ...
31-Jul-2019 15:44:26 Selecting previously unselected package libidn11:amd64.
31-Jul-2019 15:44:26 Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ...
31-Jul-2019 15:44:26 Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ...
31-Jul-2019 15:44:28 Selecting previously unselected package libp11-kit0:amd64.
31-Jul-2019 15:44:28 Preparing to unpack .../libp11-kit0_0.23.2-5~ubuntu16.04.1_amd64.deb ...
31-Jul-2019 15:44:28 Unpacking libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ...
31-Jul-2019 15:44:29 Selecting previously unselected package libtasn1-6:amd64.
31-Jul-2019 15:44:29 Preparing to unpack .../libtasn1-6_4.7-3ubuntu0.16.04.3_amd64.deb ...
31-Jul-2019 15:44:29 Unpacking libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ...
31-Jul-2019 15:44:30 Selecting previously unselected package libgnutls30:amd64.
31-Jul-2019 15:44:30 Preparing to unpack .../libgnutls30_3.4.10-4ubuntu1.5_amd64.deb ...
31-Jul-2019 15:44:30 Unpacking libgnutls30:amd64 (3.4.10-4ubuntu1.5) ...
31-Jul-2019 15:44:31 Selecting previously unselected package libsqlite3-0:amd64.
31-Jul-2019 15:44:31 Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1.2_amd64.deb ...
31-Jul-2019 15:44:31 Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1.2) ...
31-Jul-2019 15:44:31 Selecting previously unselected package libssl1.0.0:amd64.
31-Jul-2019 15:44:31 Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.15_amd64.deb ...
31-Jul-2019 15:44:31 Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ...
31-Jul-2019 15:44:35 Selecting previously unselected package mime-support.
31-Jul-2019 15:44:35 Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ...
31-Jul-2019 15:44:35 Unpacking mime-support (3.59ubuntu1) ...
31-Jul-2019 15:44:36 Selecting previously unselected package libroken18-heimdal:amd64.
31-Jul-2019 15:44:36 Preparing to unpack .../libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
31-Jul-2019 15:44:37 Unpacking libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:44:37 Selecting previously unselected package libasn1-8-heimdal:amd64.
31-Jul-2019 15:44:37 Preparing to unpack .../libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
31-Jul-2019 15:44:38 Unpacking libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:44:39 Selecting previously unselected package libkrb5support0:amd64.
31-Jul-2019 15:44:39 Preparing to unpack .../libkrb5support0_1.13.2+dfsg-5ubuntu2.1_amd64.deb ...
31-Jul-2019 15:44:39 Unpacking libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
31-Jul-2019 15:44:41 Selecting previously unselected package libk5crypto3:amd64.
31-Jul-2019 15:44:41 Preparing to unpack .../libk5crypto3_1.13.2+dfsg-5ubuntu2.1_amd64.deb ...
31-Jul-2019 15:44:41 Unpacking libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
31-Jul-2019 15:44:42 Selecting previously unselected package libkeyutils1:amd64.
31-Jul-2019 15:44:42 Preparing to unpack .../libkeyutils1_1.5.9-8ubuntu1_amd64.deb ...
31-Jul-2019 15:44:42 Unpacking libkeyutils1:amd64 (1.5.9-8ubuntu1) ...
31-Jul-2019 15:44:43 Selecting previously unselected package libkrb5-3:amd64.
31-Jul-2019 15:44:43 Preparing to unpack .../libkrb5-3_1.13.2+dfsg-5ubuntu2.1_amd64.deb ...
31-Jul-2019 15:44:44 Unpacking libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
31-Jul-2019 15:44:45 Selecting previously unselected package libgssapi-krb5-2:amd64.
31-Jul-2019 15:44:45 Preparing to unpack .../libgssapi-krb5-2_1.13.2+dfsg-5ubuntu2.1_amd64.deb ...
31-Jul-2019 15:44:45 Unpacking libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
31-Jul-2019 15:44:46 Selecting previously unselected package libhcrypto4-heimdal:amd64.
31-Jul-2019 15:44:46 Preparing to unpack .../libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
31-Jul-2019 15:44:46 Unpacking libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:44:46 Selecting previously unselected package libheimbase1-heimdal:amd64.
31-Jul-2019 15:44:46 Preparing to unpack .../libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
31-Jul-2019 15:44:46 Unpacking libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:44:47 Selecting previously unselected package libwind0-heimdal:amd64.
31-Jul-2019 15:44:47 Preparing to unpack .../libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
31-Jul-2019 15:44:48 Unpacking libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:44:49 Selecting previously unselected package libhx509-5-heimdal:amd64.
31-Jul-2019 15:44:49 Preparing to unpack .../libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
31-Jul-2019 15:44:49 Unpacking libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:44:50 Selecting previously unselected package libkrb5-26-heimdal:amd64.
31-Jul-2019 15:44:50 Preparing to unpack .../libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
31-Jul-2019 15:44:50 Unpacking libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:44:52 Selecting previously unselected package libheimntlm0-heimdal:amd64.
31-Jul-2019 15:44:52 Preparing to unpack .../libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
31-Jul-2019 15:44:52 Unpacking libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:44:53 Selecting previously unselected package libgssapi3-heimdal:amd64.
31-Jul-2019 15:44:53 Preparing to unpack .../libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
31-Jul-2019 15:44:53 Unpacking libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:44:53 Selecting previously unselected package libsasl2-modules-db:amd64.
31-Jul-2019 15:44:53 Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-14ubuntu0.1_amd64.deb ...
31-Jul-2019 15:44:53 Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
31-Jul-2019 15:44:54 Selecting previously unselected package libsasl2-2:amd64.
31-Jul-2019 15:44:54 Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-14ubuntu0.1_amd64.deb ...
31-Jul-2019 15:44:54 Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
31-Jul-2019 15:44:54 Selecting previously unselected package libldap-2.4-2:amd64.
31-Jul-2019 15:44:54 Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu3.6_amd64.deb ...
31-Jul-2019 15:44:54 Unpacking libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.6) ...
31-Jul-2019 15:44:55 Selecting previously unselected package librtmp1:amd64.
31-Jul-2019 15:44:55 Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d-1ubuntu0.1_amd64.deb ...
31-Jul-2019 15:44:55 Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ...
31-Jul-2019 15:44:56 Selecting previously unselected package libcurl3-gnutls:amd64.
31-Jul-2019 15:44:56 Preparing to unpack .../libcurl3-gnutls_7.47.0-1ubuntu2.13_amd64.deb ...
31-Jul-2019 15:44:56 Unpacking libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.13) ...
31-Jul-2019 15:44:57 Selecting previously unselected package curl.
31-Jul-2019 15:44:57 Preparing to unpack .../curl_7.47.0-1ubuntu2.13_amd64.deb ...
31-Jul-2019 15:44:57 Unpacking curl (7.47.0-1ubuntu2.13) ...
31-Jul-2019 15:44:58 Selecting previously unselected package libpython2.7-stdlib:amd64.
31-Jul-2019 15:44:58 Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.4_amd64.deb ...
31-Jul-2019 15:44:58 Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ...
31-Jul-2019 15:44:59 Selecting previously unselected package python2.7.
31-Jul-2019 15:44:59 Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.4_amd64.deb ...
31-Jul-2019 15:44:59 Unpacking python2.7 (2.7.12-1ubuntu0~16.04.4) ...
31-Jul-2019 15:45:00 Processing triggers for libc-bin (2.23-0ubuntu11) ...
31-Jul-2019 15:45:00 Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.4) ...
31-Jul-2019 15:45:00 Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.4) ...
31-Jul-2019 15:45:00 Linking and byte-compiling packages for runtime python2.7...
31-Jul-2019 15:45:01 Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.4) ...
31-Jul-2019 15:45:01 Setting up libffi6:amd64 (3.2.1-4) ...
31-Jul-2019 15:45:01 Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ...
31-Jul-2019 15:45:02 Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ...
31-Jul-2019 15:45:02 Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ...
31-Jul-2019 15:45:03 Setting up libidn11:amd64 (1.32-3ubuntu1.2) ...
31-Jul-2019 15:45:03 Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ...
31-Jul-2019 15:45:03 Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ...
31-Jul-2019 15:45:03 Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.5) ...
31-Jul-2019 15:45:03 Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1.2) ...
31-Jul-2019 15:45:04 Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ...
31-Jul-2019 15:45:04 debconf: unable to initialize frontend: Dialog
31-Jul-2019 15:45:04 debconf: (TERM is not set, so the dialog frontend is not usable.)
31-Jul-2019 15:45:04 debconf: falling back to frontend: Readline
31-Jul-2019 15:45:04 debconf: unable to initialize frontend: Readline
31-Jul-2019 15:45:04 debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
31-Jul-2019 15:45:04 debconf: falling back to frontend: Teletype
31-Jul-2019 15:45:05 Setting up mime-support (3.59ubuntu1) ...
31-Jul-2019 15:45:05 Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:45:06 Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:45:06 Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
31-Jul-2019 15:45:07 Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
31-Jul-2019 15:45:08 Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ...
31-Jul-2019 15:45:08 Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
31-Jul-2019 15:45:08 Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
31-Jul-2019 15:45:08 Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:45:09 Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:45:09 Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:45:09 Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:45:10 Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:45:10 Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:45:11 Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
31-Jul-2019 15:45:11 Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
31-Jul-2019 15:45:12 Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
31-Jul-2019 15:45:12 Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.6) ...
31-Jul-2019 15:45:13 Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ...
31-Jul-2019 15:45:13 Setting up libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.13) ...
31-Jul-2019 15:45:13 Setting up curl (7.47.0-1ubuntu2.13) ...
31-Jul-2019 15:45:13 Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.4) ...
31-Jul-2019 15:45:14 Setting up python2.7 (2.7.12-1ubuntu0~16.04.4) ...
31-Jul-2019 15:45:15 Processing triggers for libc-bin (2.23-0ubuntu11) ...
31-Jul-2019 15:45:16   % Total % Received % Xferd Average Speed  Time   Time  Time Current
31-Jul-2019 15:45:16                                  Dload  Upload   Total Spent   Left Speed
31-Jul-2019 15:45:16
31-Jul-2019 15:45:16 0   0  0  0  0   0   0   0 --:--:-- --:--:-- --:--:--  0
31-Jul-2019 15:45:16 100 1733k 100 1733k 0   0 14.0M   0 --:--:-- --:--:-- --:--:-- 14.1M
31-Jul-2019 15:45:17 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
31-Jul-2019 15:45:17 Collecting pip
31-Jul-2019 15:45:17   Downloading https://files.pythonhosted.org/packages/62/ca/94d32a6516ed197a491d17d46595ce58a83cbb2fca280414e57cd86b84dc/pip-19.2.1-py2.py3-none-any.whl (1.4MB)
31-Jul-2019 15:45:17 Collecting setuptools
31-Jul-2019 15:45:17   Downloading https://files.pythonhosted.org/packages/ec/51/f45cea425fd5cb0b0380f5b0f048ebc1da5b417e48d304838c02d6288a1e/setuptools-41.0.1-py2.py3-none-any.whl (575kB)
31-Jul-2019 15:45:18 Collecting wheel
31-Jul-2019 15:45:18   Downloading https://files.pythonhosted.org/packages/bb/10/44230dd6bf3563b8f227dbf344c908d412ad2ff48066476672f3a72e174e/wheel-0.33.4-py2.py3-none-any.whl
31-Jul-2019 15:45:18 Installing collected packages: pip, setuptools, wheel
31-Jul-2019 15:45:18 Successfully installed pip-19.2.1 setuptools-41.0.1 wheel-0.33.4
31-Jul-2019 15:45:19 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
31-Jul-2019 15:45:19 Requirement already up-to-date: setuptools in /usr/local/lib/python2.7/dist-packages (41.0.1)
31-Jul-2019 15:45:22 Removing intermediate container 8ef91fe0fab8
31-Jul-2019 15:45:22 ---> 64ddd5104f14
31-Jul-2019 15:45:22 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder
31-Jul-2019 15:45:23 ---> d917d7733a39
31-Jul-2019 15:45:23 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/
31-Jul-2019 15:45:23 ---> 881676cfe4b5
31-Jul-2019 15:45:23 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
31-Jul-2019 15:45:24 ---> Running in fa68c9844cb3
31-Jul-2019 15:45:25 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
31-Jul-2019 15:45:25 Processing /tmp/pyclowder
31-Jul-2019 15:45:25 Collecting enum34==1.1.6 (from pyclowder==2.2.0)
31-Jul-2019 15:45:25   Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl
31-Jul-2019 15:45:25 Collecting pika==1.0.0 (from pyclowder==2.2.0)
31-Jul-2019 15:45:25   Downloading https://files.pythonhosted.org/packages/53/a4/5aff2293e1cdcf5f77447ebdfeaac99b622aef7d1e723cf9a5fe317b077c/pika-1.0.0-py2.py3-none-any.whl (148kB)
31-Jul-2019 15:45:25 Collecting PyYAML==5.1 (from pyclowder==2.2.0)
31-Jul-2019 15:45:25   Downloading https://files.pythonhosted.org/packages/9f/2c/9417b5c774792634834e730932745bc09a7d36754ca00acf1ccd1ac2594d/PyYAML-5.1.tar.gz (274kB)
31-Jul-2019 15:45:25 Collecting requests==2.21.0 (from pyclowder==2.2.0)
31-Jul-2019 15:45:26   Downloading https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl (57kB)
31-Jul-2019 15:45:26 Collecting certifi>=2017.4.17 (from requests==2.21.0->pyclowder==2.2.0)
31-Jul-2019 15:45:26   Downloading https://files.pythonhosted.org/packages/69/1b/b853c7a9d4f6a6d00749e94eb6f3a041e342a885b87340b79c1ef73e3a78/certifi-2019.6.16-py2.py3-none-any.whl (157kB)
31-Jul-2019 15:45:26 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.21.0->pyclowder==2.2.0)
31-Jul-2019 15:45:26   Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB)
31-Jul-2019 15:45:26 Collecting idna<2.9,>=2.5 (from requests==2.21.0->pyclowder==2.2.0)
31-Jul-2019 15:45:26   Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB)
31-Jul-2019 15:45:26 Collecting urllib3<1.25,>=1.21.1 (from requests==2.21.0->pyclowder==2.2.0)
31-Jul-2019 15:45:26   Downloading https://files.pythonhosted.org/packages/01/11/525b02e4acc0c747de8b6ccdab376331597c569c42ea66ab0a1dbd36eca2/urllib3-1.24.3-py2.py3-none-any.whl (118kB)
31-Jul-2019 15:45:26 Building wheels for collected packages: pyclowder, PyYAML
31-Jul-2019 15:45:26   Building wheel for pyclowder (setup.py): started
31-Jul-2019 15:45:26   Building wheel for pyclowder (setup.py): finished with status 'done'
31-Jul-2019 15:45:26   Created wheel for pyclowder: filename=pyclowder-2.2.0-cp27-none-any.whl size=31348 sha256=92095a05352490ff4ba0ac0293e1f8a4a243f7cf49338a91afbb85cc2bf62ab7
31-Jul-2019 15:45:26   Stored in directory: /tmp/pip-ephem-wheel-cache-SU6bIY/wheels/aa/74/36/92a180b9736e758626878aa42c37afe9bc77b688e080a6a1fe
31-Jul-2019 15:45:26   Building wheel for PyYAML (setup.py): started
31-Jul-2019 15:45:26   Building wheel for PyYAML (setup.py): finished with status 'done'
31-Jul-2019 15:45:26   Created wheel for PyYAML: filename=PyYAML-5.1-cp27-cp27mu-linux_x86_64.whl size=44881 sha256=a6c195e3bfbb028a8844d7069a19aad62a6b39db8e7730ce28e9a8c4bc7a9bcf
31-Jul-2019 15:45:26   Stored in directory: /root/.cache/pip/wheels/ad/56/bc/1522f864feb2a358ea6f1a92b4798d69ac783a28e80567a18b
31-Jul-2019 15:45:26 Successfully built pyclowder PyYAML
31-Jul-2019 15:45:26 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder
31-Jul-2019 15:45:27 Successfully installed PyYAML-5.1 certifi-2019.6.16 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-2.2.0 requests-2.21.0 urllib3-1.24.3
31-Jul-2019 15:45:28 Removing intermediate container fa68c9844cb3
31-Jul-2019 15:45:28 ---> e14e58e0cb28
31-Jul-2019 15:45:28 Step 8/10 : WORKDIR /home/clowder
31-Jul-2019 15:45:29 ---> Running in 824d743e9069
31-Jul-2019 15:45:29 Removing intermediate container 824d743e9069
31-Jul-2019 15:45:29 ---> fa80df4b35f7
31-Jul-2019 15:45:29 Step 9/10 : COPY notifications.json /home/clowder/
31-Jul-2019 15:45:30 ---> 1824203fc34e
31-Jul-2019 15:45:30 Step 10/10 : CMD python "./${MAIN_SCRIPT}"
31-Jul-2019 15:45:31 ---> Running in 0f9c4f7c41d0
31-Jul-2019 15:45:31 Removing intermediate container 0f9c4f7c41d0
31-Jul-2019 15:45:31 ---> d5ddd873a9a7
31-Jul-2019 15:45:31 Successfully built d5ddd873a9a7
31-Jul-2019 15:45:31 Successfully tagged clowder/pyclowder:latest
31-Jul-2019 15:45:32 Sending build context to Docker daemon  281.6kB
31-Jul-2019 15:45:32
31-Jul-2019 15:45:32 Step 1/7 : ARG PYCLOWDER_PYTHON=""
31-Jul-2019 15:45:32 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest
31-Jul-2019 15:45:32 ---> d5ddd873a9a7
31-Jul-2019 15:45:32 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/
31-Jul-2019 15:45:32 ---> Running in 61f156adf2d3
31-Jul-2019 15:45:32 Removing intermediate container 61f156adf2d3
31-Jul-2019 15:45:32 ---> 949a105e2e88
31-Jul-2019 15:45:32 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
31-Jul-2019 15:45:32 ---> Running in 72360a825f98
31-Jul-2019 15:45:33 Removing intermediate container 72360a825f98
31-Jul-2019 15:45:33 ---> 5c071fbb95cb
31-Jul-2019 15:45:33 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
31-Jul-2019 15:45:33 ---> Running in f4522c17463b
31-Jul-2019 15:45:34 Removing intermediate container f4522c17463b
31-Jul-2019 15:45:34 ---> 3b925cecec50
31-Jul-2019 15:45:34 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
31-Jul-2019 15:45:34 ---> Running in d98bec891965
31-Jul-2019 15:45:35 Removing intermediate container d98bec891965
31-Jul-2019 15:45:35 ---> 97c2763b5855
31-Jul-2019 15:45:35 Step 7/7 : ONBUILD ADD . /home/clowder/
31-Jul-2019 15:45:35 ---> Running in e939bee9b1f2
31-Jul-2019 15:45:35 Removing intermediate container e939bee9b1f2
31-Jul-2019 15:45:35 ---> bf1c9c97bd74
31-Jul-2019 15:45:35 Successfully built bf1c9c97bd74
31-Jul-2019 15:45:35 Successfully tagged clowder/pyclowder:onbuild
31-Jul-2019 15:45:35 Sending build context to Docker daemon   12.8kB
31-Jul-2019 15:45:35
31-Jul-2019 15:45:35 Step 1/6 : ARG PYCLOWDER_PYTHON=""
31-Jul-2019 15:45:35 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild
31-Jul-2019 15:45:35 # Executing 5 build triggers
31-Jul-2019 15:45:37 ---> Running in 9dfefe9368ee
31-Jul-2019 15:45:39 Removing intermediate container 9dfefe9368ee
31-Jul-2019 15:45:40 ---> Running in 00ed9ff23c2f
31-Jul-2019 15:45:42 Removing intermediate container 00ed9ff23c2f
31-Jul-2019 15:45:43 ---> eb9cf37c5962
31-Jul-2019 15:45:43 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py"     RABBITMQ_QUEUE=""     IMAGE_BINARY=""     IMAGE_TYPE=""     IMAGE_THUMBNAIL_COMMAND=""     IMAGE_PREVIEW_COMMAND=""     PREVIEW_BINARY=""     PREVIEW_TYPE=""     PREVIEW_COMMAND=""
31-Jul-2019 15:45:43 ---> Running in cd773d90fdc7
31-Jul-2019 15:45:43 Removing intermediate container cd773d90fdc7
31-Jul-2019 15:45:43 ---> 276073e131c6
31-Jul-2019 15:45:43 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
31-Jul-2019 15:45:44 ---> Running in 403475b5c49e
31-Jul-2019 15:45:45 Removing intermediate container 403475b5c49e
31-Jul-2019 15:45:45 ---> 64ada8e2532b
31-Jul-2019 15:45:45 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
31-Jul-2019 15:45:45 ---> Running in a312641e2d2c
31-Jul-2019 15:45:46 Removing intermediate container a312641e2d2c
31-Jul-2019 15:45:46 ---> f25c418fbc95
31-Jul-2019 15:45:46 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/
31-Jul-2019 15:45:46 ---> Running in 6f8fb195081f
31-Jul-2019 15:45:46 Removing intermediate container 6f8fb195081f
31-Jul-2019 15:45:46 ---> 81b9552230c7
31-Jul-2019 15:45:46 Successfully built 81b9552230c7
31-Jul-2019 15:45:46 Successfully tagged clowder/extractors-binary-preview:onbuild
31-Jul-2019 15:45:46 Sending build context to Docker daemon  6.656kB
31-Jul-2019 15:45:46
31-Jul-2019 15:45:46 Step 1/11 : ARG PYCLOWDER_PYTHON=""
31-Jul-2019 15:45:46 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest
31-Jul-2019 15:45:46 ---> d5ddd873a9a7
31-Jul-2019 15:45:46 Step 3/11 : ENV EXTRACTION_FUNC=""
31-Jul-2019 15:45:47 ---> Running in 9b41f914df4f
31-Jul-2019 15:45:48 Removing intermediate container 9b41f914df4f
31-Jul-2019 15:45:48 ---> 966e95f119e4
31-Jul-2019 15:45:48 Step 4/11 : ENV EXTRACTION_MODULE=""
31-Jul-2019 15:45:48 ---> Running in 104ac24b70ed
31-Jul-2019 15:45:49 Removing intermediate container 104ac24b70ed
31-Jul-2019 15:45:49 ---> d7c565b0a47a
31-Jul-2019 15:45:49 Step 5/11 : COPY simple_extractor.py .
31-Jul-2019 15:45:49 ---> 04f8e361cd34
31-Jul-2019 15:45:49 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/
31-Jul-2019 15:45:49 ---> Running in 85e39ea5ffd0
31-Jul-2019 15:45:50 Removing intermediate container 85e39ea5ffd0
31-Jul-2019 15:45:50 ---> ae7f153aeee8
31-Jul-2019 15:45:50 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
31-Jul-2019 15:45:50 ---> Running in d528b65ca50b
31-Jul-2019 15:45:51 Removing intermediate container d528b65ca50b
31-Jul-2019 15:45:51 ---> 633812a7a347
31-Jul-2019 15:45:51 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
31-Jul-2019 15:45:52 ---> Running in 4c0dbc896042
31-Jul-2019 15:45:52 Removing intermediate container 4c0dbc896042
31-Jul-2019 15:45:52 ---> fa8ec16f60ae
31-Jul-2019 15:45:52 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
31-Jul-2019 15:45:53 ---> Running in dc3e37b807fd
31-Jul-2019 15:45:55 Removing intermediate container dc3e37b807fd
31-Jul-2019 15:45:55 ---> 4acc50bf2563
31-Jul-2019 15:45:55 Step 10/11 : ONBUILD ADD . /home/clowder/
31-Jul-2019 15:45:55 ---> Running in 7954868ca723
31-Jul-2019 15:45:56 Removing intermediate container 7954868ca723
31-Jul-2019 15:45:56 ---> 5db9d6b0f73e
31-Jul-2019 15:45:56 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
31-Jul-2019 15:45:56 ---> Running in 7b47adf251ac
31-Jul-2019 15:45:57 Removing intermediate container 7b47adf251ac
31-Jul-2019 15:45:57 ---> 740c80c27ff1
31-Jul-2019 15:45:57 Successfully built 740c80c27ff1
31-Jul-2019 15:45:57 Successfully tagged clowder/extractors-simple-extractor:onbuild
31-Jul-2019 15:45:57 Sending build context to Docker daemon  13.31kB
31-Jul-2019 15:45:57
31-Jul-2019 15:45:57 Step 1/11 : ARG PYCLOWDER_PYTHON=""
31-Jul-2019 15:45:57 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest
31-Jul-2019 15:45:57 ---> d5ddd873a9a7
31-Jul-2019 15:45:57 Step 3/11 : ENV R_SCRIPT=""     R_FUNCTION=""
31-Jul-2019 15:45:58 ---> Running in 44b2809e0e7c
31-Jul-2019 15:45:58 Removing intermediate container 44b2809e0e7c
31-Jul-2019 15:45:58 ---> 7308f76df87e
31-Jul-2019 15:45:58 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
31-Jul-2019 15:45:59 ---> Running in 0afc63a6ea06
31-Jul-2019 15:46:00 Executing: /tmp/tmp.nq69JmWEIm/gpg.1.sh --keyserver
31-Jul-2019 15:46:00 keyserver.ubuntu.com
31-Jul-2019 15:46:00 --recv
31-Jul-2019 15:46:00 E084DAB9
31-Jul-2019 15:46:00 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com
31-Jul-2019 15:46:00 gpg: key E084DAB9: public key "Totally Legit Signing Key <mallory@example.org>" imported
31-Jul-2019 15:46:00 gpg: Total number processed: 1
31-Jul-2019 15:46:00 gpg:               imported: 1  (RSA: 1)
31-Jul-2019 15:46:04 W: GPG error: http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9
31-Jul-2019 15:46:04 W: The repository 'http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease' is not signed.
31-Jul-2019 15:46:05 Reading package lists...
31-Jul-2019 15:46:05 Building dependency tree...
31-Jul-2019 15:46:05 Reading state information...
31-Jul-2019 15:46:05 The following additional packages will be installed:
31-Jul-2019 15:46:05   autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2
31-Jul-2019 15:46:05   ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism
31-Jul-2019 15:46:05   dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core
31-Jul-2019 15:46:05   g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base
31-Jul-2019 15:46:05   icu-devtools intltool intltool-debian libarchive-zip-perl libasan2
31-Jul-2019 15:46:05   libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev
31-Jul-2019 15:46:05   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3
31-Jul-2019 15:46:05   libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl
31-Jul-2019 15:46:05   libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev
31-Jul-2019 15:46:05   libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3
31-Jul-2019 15:46:05   libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
31-Jul-2019 15:46:05   libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
31-Jul-2019 15:46:05   libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl
31-Jul-2019 15:46:05   libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
31-Jul-2019 15:46:05   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0
31-Jul-2019 15:46:05   liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1
31-Jul-2019 15:46:05   libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl
31-Jul-2019 15:46:05   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
31-Jul-2019 15:46:05   libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22
31-Jul-2019 15:46:05   libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib
31-Jul-2019 15:46:05   libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6
31-Jul-2019 15:46:05   libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl
31-Jul-2019 15:46:05   libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl
31-Jul-2019 15:46:05   libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6
31-Jul-2019 15:46:05   libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
31-Jul-2019 15:46:05   libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6
31-Jul-2019 15:46:05   linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22
31-Jul-2019 15:46:05   pkg-config po-debconf python python-minimal python-pkg-resources
31-Jul-2019 15:46:05   python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils
31-Jul-2019 15:46:05   zip zlib1g-dev
31-Jul-2019 15:46:05 Suggested packages:
31-Jul-2019 15:46:05   autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican
31-Jul-2019 15:46:05   | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make
31-Jul-2019 15:46:05   debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg
31-Jul-2019 15:46:05   gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg
31-Jul-2019 15:46:05   libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg
31-Jul-2019 15:46:05   libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg
31-Jul-2019 15:46:05   gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib
31-Jul-2019 15:46:05   gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc
31-Jul-2019 15:46:05   glibc-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc
31-Jul-2019 15:46:05   ncurses-doc readline-doc libstdc++-5-doc tcl8.6 tk8.6 libauthen-ntlm-perl
31-Jul-2019 15:46:05   make-doc less www-browser ed diffutils-doc perl-doc
31-Jul-2019 15:46:05   libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-box-perl
31-Jul-2019 15:46:05   python-doc python-tk python-setuptools python-rsvg python-cairo ess
31-Jul-2019 15:46:05   r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
31-Jul-2019 15:46:05   texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
31-Jul-2019 15:46:05   texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
31-Jul-2019 15:46:05   gvfs-bin
31-Jul-2019 15:46:05 Recommended packages:
31-Jul-2019 15:46:05   fakeroot libalgorithm-merge-perl libasprintf-dev libgettextpo-dev bzip2-doc
31-Jul-2019 15:46:05   manpages manpages-dev libfile-fcntllock-perl libglib2.0-data
31-Jul-2019 15:46:05   shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl
31-Jul-2019 15:46:05   libhttp-daemon-perl libmailtools-perl xml-core ifupdown rename
31-Jul-2019 15:46:05   libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
31-Jul-2019 15:46:05   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
31-Jul-2019 15:46:05 The following NEW packages will be installed:
31-Jul-2019 15:46:05   autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2
31-Jul-2019 15:46:05   ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism
31-Jul-2019 15:46:05   dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core
31-Jul-2019 15:46:05   g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base
31-Jul-2019 15:46:05   icu-devtools intltool intltool-debian libarchive-zip-perl libasan2
31-Jul-2019 15:46:05   libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev
31-Jul-2019 15:46:05   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3
31-Jul-2019 15:46:05   libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl
31-Jul-2019 15:46:05   libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev
31-Jul-2019 15:46:05   libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3
31-Jul-2019 15:46:05   libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
31-Jul-2019 15:46:05   libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
31-Jul-2019 15:46:05   libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl
31-Jul-2019 15:46:05   libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
31-Jul-2019 15:46:05   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0
31-Jul-2019 15:46:05   liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1
31-Jul-2019 15:46:05   libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl
31-Jul-2019 15:46:05   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
31-Jul-2019 15:46:05   libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22
31-Jul-2019 15:46:05   libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib
31-Jul-2019 15:46:05   libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6
31-Jul-2019 15:46:05   libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl
31-Jul-2019 15:46:05   libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl
31-Jul-2019 15:46:05   libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6
31-Jul-2019 15:46:05   libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
31-Jul-2019 15:46:05   libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6
31-Jul-2019 15:46:05   linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22
31-Jul-2019 15:46:05   pkg-config po-debconf python python-minimal python-pkg-resources
31-Jul-2019 15:46:05   python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common
31-Jul-2019 15:46:05   xauth xdg-utils xz-utils zip zlib1g-dev
31-Jul-2019 15:46:05 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded.
31-Jul-2019 15:46:05 Need to get 114 MB of archives.
31-Jul-2019 15:46:05 After this operation, 409 MB of additional disk space will be used.
31-Jul-2019 15:46:05 WARNING: The following packages cannot be authenticated!
31-Jul-2019 15:46:05   r-base-core r-base-dev
31-Jul-2019 15:46:05 E: There were unauthenticated packages and -y was used without --allow-unauthenticated
31-Jul-2019 15:46:06 The command '/bin/sh -c echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"' returned a non-zero code: 100
31-Jul-2019 15:46:06
31-Jul-2019 15:46:06 Failing task since return code of [/bin/sh docker.sh] was 100 while expected 0
31-Jul-2019 15:46:06 Finished task 'docker build' with result: Failed
31-Jul-2019 15:46:06 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
31-Jul-2019 15:46:06 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2100-JOB1...
31-Jul-2019 15:46:06 Finished task 'test results' with result: Success
31-Jul-2019 15:46:06 Running post build plugin 'Docker Container Cleanup'
31-Jul-2019 15:46:06 Running post build plugin 'NCover Results Collector'
31-Jul-2019 15:46:06 Running post build plugin 'Clover Results Collector'
31-Jul-2019 15:46:06 Running post build plugin 'npm Cache Cleanup'
31-Jul-2019 15:46:06 Running post build plugin 'Artifact Copier'
31-Jul-2019 15:46:06 Finalising the build...
31-Jul-2019 15:46:06 Stopping timer.
31-Jul-2019 15:46:06 Build CATS-PYC2100-JOB1-1 completed.
31-Jul-2019 15:46:06 Running on server: post build plugin 'NCover Results Collector'
31-Jul-2019 15:46:07 Running on server: post build plugin 'Build Hanging Detection Configuration'
31-Jul-2019 15:46:07 Running on server: post build plugin 'Clover Delta Calculator'
31-Jul-2019 15:46:07 Running on server: post build plugin 'Maven Dependencies Postprocessor'
31-Jul-2019 15:46:07 All post build plugins have finished
31-Jul-2019 15:46:07 Generating build results summary...
31-Jul-2019 15:46:07 Saving build results to disk...
31-Jul-2019 15:46:07 Logging substituted variables...
31-Jul-2019 15:46:07 Indexing build results...
31-Jul-2019 15:46:07 Finished building CATS-PYC2100-JOB1-1.