Next Generation of pyClowder
Build: #1 was successful
Job: Default Job was successful
Build log
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| 01-Dec-2019 07:43:33 | Preparing to unpack .../libgfortran3_5.4.0-6ubuntu1~16.04.12_amd64.deb ... |
| 01-Dec-2019 07:43:33 | Unpacking libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.12) ... |
| 01-Dec-2019 07:43:33 | Selecting previously unselected package libgfortran-5-dev:amd64. |
| 01-Dec-2019 07:43:33 | Preparing to unpack .../libgfortran-5-dev_5.4.0-6ubuntu1~16.04.12_amd64.deb ... |
| 01-Dec-2019 07:43:33 | Unpacking libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... |
| 01-Dec-2019 07:43:34 | Selecting previously unselected package gfortran-5. |
| 01-Dec-2019 07:43:34 | Preparing to unpack .../gfortran-5_5.4.0-6ubuntu1~16.04.12_amd64.deb ... |
| 01-Dec-2019 07:43:34 | Unpacking gfortran-5 (5.4.0-6ubuntu1~16.04.12) ... |
| 01-Dec-2019 07:43:35 | Selecting previously unselected package gfortran. |
| 01-Dec-2019 07:43:35 | Preparing to unpack .../gfortran_4%3a5.3.1-1ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:35 | Unpacking gfortran (4:5.3.1-1ubuntu1) ... |
| 01-Dec-2019 07:43:36 | Selecting previously unselected package icu-devtools. |
| 01-Dec-2019 07:43:36 | Preparing to unpack .../icu-devtools_55.1-7ubuntu0.4_amd64.deb ... |
| 01-Dec-2019 07:43:36 | Unpacking icu-devtools (55.1-7ubuntu0.4) ... |
| 01-Dec-2019 07:43:36 | Selecting previously unselected package libblas-common. |
| 01-Dec-2019 07:43:36 | Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_amd64.deb ... |
| 01-Dec-2019 07:43:36 | Unpacking libblas-common (3.6.0-2ubuntu2) ... |
| 01-Dec-2019 07:43:36 | Selecting previously unselected package libblas3. |
| 01-Dec-2019 07:43:36 | Preparing to unpack .../libblas3_3.6.0-2ubuntu2_amd64.deb ... |
| 01-Dec-2019 07:43:36 | Unpacking libblas3 (3.6.0-2ubuntu2) ... |
| 01-Dec-2019 07:43:37 | Selecting previously unselected package libblas-dev. |
| 01-Dec-2019 07:43:37 | Preparing to unpack .../libblas-dev_3.6.0-2ubuntu2_amd64.deb ... |
| 01-Dec-2019 07:43:37 | Unpacking libblas-dev (3.6.0-2ubuntu2) ... |
| 01-Dec-2019 07:43:38 | Selecting previously unselected package libbz2-dev:amd64. |
| 01-Dec-2019 07:43:38 | Preparing to unpack .../libbz2-dev_1.0.6-8ubuntu0.2_amd64.deb ... |
| 01-Dec-2019 07:43:38 | Unpacking libbz2-dev:amd64 (1.0.6-8ubuntu0.2) ... |
| 01-Dec-2019 07:43:38 | Selecting previously unselected package libpixman-1-0:amd64. |
| 01-Dec-2019 07:43:38 | Preparing to unpack .../libpixman-1-0_0.33.6-1_amd64.deb ... |
| 01-Dec-2019 07:43:38 | Unpacking libpixman-1-0:amd64 (0.33.6-1) ... |
| 01-Dec-2019 07:43:38 | Selecting previously unselected package libxcb-render0:amd64. |
| 01-Dec-2019 07:43:38 | Preparing to unpack .../libxcb-render0_1.11.1-1ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:38 | Unpacking libxcb-render0:amd64 (1.11.1-1ubuntu1) ... |
| 01-Dec-2019 07:43:39 | Selecting previously unselected package libxcb-shm0:amd64. |
| 01-Dec-2019 07:43:39 | Preparing to unpack .../libxcb-shm0_1.11.1-1ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:39 | Unpacking libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... |
| 01-Dec-2019 07:43:39 | Selecting previously unselected package libcairo2:amd64. |
| 01-Dec-2019 07:43:39 | Preparing to unpack .../libcairo2_1.14.6-1_amd64.deb ... |
| 01-Dec-2019 07:43:39 | Unpacking libcairo2:amd64 (1.14.6-1) ... |
| 01-Dec-2019 07:43:40 | Selecting previously unselected package libcurl3:amd64. |
| 01-Dec-2019 07:43:40 | Preparing to unpack .../libcurl3_7.47.0-1ubuntu2.14_amd64.deb ... |
| 01-Dec-2019 07:43:40 | Unpacking libcurl3:amd64 (7.47.0-1ubuntu2.14) ... |
| 01-Dec-2019 07:43:40 | Selecting previously unselected package libdatrie1:amd64. |
| 01-Dec-2019 07:43:40 | Preparing to unpack .../libdatrie1_0.2.10-2_amd64.deb ... |
| 01-Dec-2019 07:43:40 | Unpacking libdatrie1:amd64 (0.2.10-2) ... |
| 01-Dec-2019 07:43:40 | Selecting previously unselected package libgraphite2-3:amd64. |
| 01-Dec-2019 07:43:40 | Preparing to unpack .../libgraphite2-3_1.3.10-0ubuntu0.16.04.1_amd64.deb ... |
| 01-Dec-2019 07:43:40 | Unpacking libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... |
| 01-Dec-2019 07:43:41 | Selecting previously unselected package libharfbuzz0b:amd64. |
| 01-Dec-2019 07:43:41 | Preparing to unpack .../libharfbuzz0b_1.0.1-1ubuntu0.1_amd64.deb ... |
| 01-Dec-2019 07:43:41 | Unpacking libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... |
| 01-Dec-2019 07:43:41 | Selecting previously unselected package libicu-dev:amd64. |
| 01-Dec-2019 07:43:41 | Preparing to unpack .../libicu-dev_55.1-7ubuntu0.4_amd64.deb ... |
| 01-Dec-2019 07:43:41 | Unpacking libicu-dev:amd64 (55.1-7ubuntu0.4) ... |
| 01-Dec-2019 07:43:44 | Selecting previously unselected package libjpeg-turbo8-dev:amd64. |
| 01-Dec-2019 07:43:44 | Preparing to unpack .../libjpeg-turbo8-dev_1.4.2-0ubuntu3.3_amd64.deb ... |
| 01-Dec-2019 07:43:44 | Unpacking libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.3) ... |
| 01-Dec-2019 07:43:44 | Selecting previously unselected package libjpeg8:amd64. |
| 01-Dec-2019 07:43:44 | Preparing to unpack .../libjpeg8_8c-2ubuntu8_amd64.deb ... |
| 01-Dec-2019 07:43:44 | Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... |
| 01-Dec-2019 07:43:44 | Selecting previously unselected package libjpeg8-dev:amd64. |
| 01-Dec-2019 07:43:44 | Preparing to unpack .../libjpeg8-dev_8c-2ubuntu8_amd64.deb ... |
| 01-Dec-2019 07:43:44 | Unpacking libjpeg8-dev:amd64 (8c-2ubuntu8) ... |
| 01-Dec-2019 07:43:45 | Selecting previously unselected package libjpeg-dev:amd64. |
| 01-Dec-2019 07:43:45 | Preparing to unpack .../libjpeg-dev_8c-2ubuntu8_amd64.deb ... |
| 01-Dec-2019 07:43:45 | Unpacking libjpeg-dev:amd64 (8c-2ubuntu8) ... |
| 01-Dec-2019 07:43:45 | Selecting previously unselected package liblapack3. |
| 01-Dec-2019 07:43:45 | Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ... |
| 01-Dec-2019 07:43:45 | Unpacking liblapack3 (3.6.0-2ubuntu2) ... |
| 01-Dec-2019 07:43:46 | Selecting previously unselected package liblapack-dev. |
| 01-Dec-2019 07:43:46 | Preparing to unpack .../liblapack-dev_3.6.0-2ubuntu2_amd64.deb ... |
| 01-Dec-2019 07:43:46 | Unpacking liblapack-dev (3.6.0-2ubuntu2) ... |
| 01-Dec-2019 07:43:46 | Selecting previously unselected package libtinfo-dev:amd64. |
| 01-Dec-2019 07:43:46 | Preparing to unpack .../libtinfo-dev_6.0+20160213-1ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:46 | Unpacking libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... |
| 01-Dec-2019 07:43:47 | Selecting previously unselected package libncurses5-dev:amd64. |
| 01-Dec-2019 07:43:47 | Preparing to unpack .../libncurses5-dev_6.0+20160213-1ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:47 | Unpacking libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... |
| 01-Dec-2019 07:43:48 | Selecting previously unselected package libthai-data. |
| 01-Dec-2019 07:43:48 | Preparing to unpack .../libthai-data_0.1.24-2_all.deb ... |
| 01-Dec-2019 07:43:48 | Unpacking libthai-data (0.1.24-2) ... |
| 01-Dec-2019 07:43:48 | Selecting previously unselected package libthai0:amd64. |
| 01-Dec-2019 07:43:48 | Preparing to unpack .../libthai0_0.1.24-2_amd64.deb ... |
| 01-Dec-2019 07:43:48 | Unpacking libthai0:amd64 (0.1.24-2) ... |
| 01-Dec-2019 07:43:49 | Selecting previously unselected package libpango-1.0-0:amd64. |
| 01-Dec-2019 07:43:49 | Preparing to unpack .../libpango-1.0-0_1.38.1-1_amd64.deb ... |
| 01-Dec-2019 07:43:49 | Unpacking libpango-1.0-0:amd64 (1.38.1-1) ... |
| 01-Dec-2019 07:43:49 | Selecting previously unselected package libpangoft2-1.0-0:amd64. |
| 01-Dec-2019 07:43:49 | Preparing to unpack .../libpangoft2-1.0-0_1.38.1-1_amd64.deb ... |
| 01-Dec-2019 07:43:49 | Unpacking libpangoft2-1.0-0:amd64 (1.38.1-1) ... |
| 01-Dec-2019 07:43:49 | Selecting previously unselected package libpangocairo-1.0-0:amd64. |
| 01-Dec-2019 07:43:49 | Preparing to unpack .../libpangocairo-1.0-0_1.38.1-1_amd64.deb ... |
| 01-Dec-2019 07:43:49 | Unpacking libpangocairo-1.0-0:amd64 (1.38.1-1) ... |
| 01-Dec-2019 07:43:50 | Selecting previously unselected package libpaper1:amd64. |
| 01-Dec-2019 07:43:50 | Preparing to unpack .../libpaper1_1.1.24+nmu4ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:50 | Unpacking libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... |
| 01-Dec-2019 07:43:50 | Selecting previously unselected package libpaper-utils. |
| 01-Dec-2019 07:43:50 | Preparing to unpack .../libpaper-utils_1.1.24+nmu4ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:50 | Unpacking libpaper-utils (1.1.24+nmu4ubuntu1) ... |
| 01-Dec-2019 07:43:50 | Selecting previously unselected package libpcre16-3:amd64. |
| 01-Dec-2019 07:43:50 | Preparing to unpack .../libpcre16-3_2%3a8.38-3.1_amd64.deb ... |
| 01-Dec-2019 07:43:51 | Unpacking libpcre16-3:amd64 (2:8.38-3.1) ... |
| 01-Dec-2019 07:43:51 | Selecting previously unselected package libpcre32-3:amd64. |
| 01-Dec-2019 07:43:51 | Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... |
| 01-Dec-2019 07:43:51 | Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... |
| 01-Dec-2019 07:43:51 | Selecting previously unselected package libpcre3-dev:amd64. |
| 01-Dec-2019 07:43:51 | Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... |
| 01-Dec-2019 07:43:51 | Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... |
| 01-Dec-2019 07:43:52 | Selecting previously unselected package zlib1g-dev:amd64. |
| 01-Dec-2019 07:43:52 | Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.1_amd64.deb ... |
| 01-Dec-2019 07:43:52 | Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
| 01-Dec-2019 07:43:52 | Selecting previously unselected package libpng12-dev:amd64. |
| 01-Dec-2019 07:43:52 | Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1.1_amd64.deb ... |
| 01-Dec-2019 07:43:52 | Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
| 01-Dec-2019 07:43:52 | Selecting previously unselected package libreadline6-dev:amd64. |
| 01-Dec-2019 07:43:52 | Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... |
| 01-Dec-2019 07:43:52 | Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... |
| 01-Dec-2019 07:43:53 | Selecting previously unselected package libreadline-dev:amd64. |
| 01-Dec-2019 07:43:53 | Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... |
| 01-Dec-2019 07:43:53 | Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... |
| 01-Dec-2019 07:43:54 | Selecting previously unselected package libtcl8.6:amd64. |
| 01-Dec-2019 07:43:54 | Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ... |
| 01-Dec-2019 07:43:54 | Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ... |
| 01-Dec-2019 07:43:54 | Selecting previously unselected package libtiff5:amd64. |
| 01-Dec-2019 07:43:54 | Preparing to unpack .../libtiff5_4.0.6-1ubuntu0.7_amd64.deb ... |
| 01-Dec-2019 07:43:54 | Unpacking libtiff5:amd64 (4.0.6-1ubuntu0.7) ... |
| 01-Dec-2019 07:43:55 | Selecting previously unselected package libtk8.6:amd64. |
| 01-Dec-2019 07:43:55 | Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ... |
| 01-Dec-2019 07:43:55 | Unpacking libtk8.6:amd64 (8.6.5-1) ... |
| 01-Dec-2019 07:43:55 | Selecting previously unselected package libxt6:amd64. |
| 01-Dec-2019 07:43:55 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:55 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 01-Dec-2019 07:43:56 | Selecting previously unselected package pkg-config. |
| 01-Dec-2019 07:43:56 | Preparing to unpack .../pkg-config_0.29.1-0ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:56 | Unpacking pkg-config (0.29.1-0ubuntu1) ... |
| 01-Dec-2019 07:43:56 | Selecting previously unselected package zip. |
| 01-Dec-2019 07:43:56 | Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... |
| 01-Dec-2019 07:43:56 | Unpacking zip (3.0-11) ... |
| 01-Dec-2019 07:43:56 | Selecting previously unselected package unzip. |
| 01-Dec-2019 07:43:56 | Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ... |
| 01-Dec-2019 07:43:56 | Unpacking unzip (6.0-20ubuntu1) ... |
| 01-Dec-2019 07:43:57 | Selecting previously unselected package xdg-utils. |
| 01-Dec-2019 07:43:57 | Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.3_all.deb ... |
| 01-Dec-2019 07:43:57 | Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
| 01-Dec-2019 07:43:58 | Selecting previously unselected package r-base-core. |
| 01-Dec-2019 07:43:58 | Preparing to unpack .../r-base-core_3.4.4-1xenial0_amd64.deb ... |
| 01-Dec-2019 07:43:58 | Unpacking r-base-core (3.4.4-1xenial0) ... |
| 01-Dec-2019 07:44:00 | Selecting previously unselected package liblzma-dev:amd64. |
| 01-Dec-2019 07:44:00 | Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... |
| 01-Dec-2019 07:44:00 | Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
| 01-Dec-2019 07:44:01 | Selecting previously unselected package r-base-dev. |
| 01-Dec-2019 07:44:01 | Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... |
| 01-Dec-2019 07:44:01 | Unpacking r-base-dev (3.4.4-1xenial0) ... |
| 01-Dec-2019 07:44:01 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 01-Dec-2019 07:44:01 | Processing triggers for mime-support (3.59ubuntu1) ... |
| 01-Dec-2019 07:44:01 | Setting up libgdbm3:amd64 (1.8.3-13.1) ... |
| 01-Dec-2019 07:44:02 | Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.4) ... |
| 01-Dec-2019 07:44:02 | No schema files found: doing nothing. |
| 01-Dec-2019 07:44:02 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 01-Dec-2019 07:44:02 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 01-Dec-2019 07:44:02 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 01-Dec-2019 07:44:02 | Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 01-Dec-2019 07:44:02 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 01-Dec-2019 07:44:03 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 01-Dec-2019 07:44:03 | Setting up groff-base (1.22.3-7) ... |
| 01-Dec-2019 07:44:03 | Setting up bsdmainutils (9.0.6ubuntu3) ... |
| 01-Dec-2019 07:44:03 | update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode |
| 01-Dec-2019 07:44:03 | update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode |
| 01-Dec-2019 07:44:03 | Setting up libpipeline1:amd64 (1.4.1-2) ... |
| 01-Dec-2019 07:44:04 | Setting up man-db (2.7.5-1) ... |
| 01-Dec-2019 07:44:04 | debconf: unable to initialize frontend: Dialog |
| 01-Dec-2019 07:44:04 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 01-Dec-2019 07:44:04 | debconf: falling back to frontend: Readline |
| 01-Dec-2019 07:44:04 | Building database of manual pages ... |
| 01-Dec-2019 07:44:12 | Setting up fonts-dejavu-core (2.35-1) ... |
| 01-Dec-2019 07:44:13 | Setting up ucf (3.0036) ... |
| 01-Dec-2019 07:44:13 | debconf: unable to initialize frontend: Dialog |
| 01-Dec-2019 07:44:13 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 01-Dec-2019 07:44:13 | debconf: falling back to frontend: Readline |
| 01-Dec-2019 07:44:13 | Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... |
| 01-Dec-2019 07:44:16 | Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... |
| 01-Dec-2019 07:44:16 | Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.4) ... |
| 01-Dec-2019 07:44:16 | Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... |
| 01-Dec-2019 07:44:16 | Setting up fontconfig (2.11.94-0ubuntu1.1) ... |
| 01-Dec-2019 07:44:18 | Regenerating fonts cache... done. |
| 01-Dec-2019 07:44:18 | Setting up x11-common (1:7.7+13ubuntu3.1) ... |
| 01-Dec-2019 07:44:19 | debconf: unable to initialize frontend: Dialog |
| 01-Dec-2019 07:44:19 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 01-Dec-2019 07:44:19 | debconf: falling back to frontend: Readline |
| 01-Dec-2019 07:44:19 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 01-Dec-2019 07:44:19 | invoke-rc.d: could not determine current runlevel |
| 01-Dec-2019 07:44:19 | invoke-rc.d: policy-rc.d denied execution of start. |
| 01-Dec-2019 07:44:19 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 01-Dec-2019 07:44:20 | Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.3) ... |
| 01-Dec-2019 07:44:20 | Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... |
| 01-Dec-2019 07:44:20 | Setting up libsigsegv2:amd64 (2.10-4) ... |
| 01-Dec-2019 07:44:20 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 01-Dec-2019 07:44:20 | Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... |
| 01-Dec-2019 07:44:21 | Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... |
| 01-Dec-2019 07:44:21 | Setting up libxft2:amd64 (2.3.2-1) ... |
| 01-Dec-2019 07:44:21 | Setting up libxss1:amd64 (1:1.2.2-1) ... |
| 01-Dec-2019 07:44:21 | Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... |
| 01-Dec-2019 07:44:21 | Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... |
| 01-Dec-2019 07:44:21 | Setting up perl (5.22.1-9ubuntu0.6) ... |
| 01-Dec-2019 07:44:22 | update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode |
| 01-Dec-2019 07:44:22 | Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.9) ... |
| 01-Dec-2019 07:44:22 | Setting up python2.7 (2.7.12-1ubuntu0~16.04.9) ... |
| 01-Dec-2019 07:44:23 | Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... |
| 01-Dec-2019 07:44:23 | Setting up python (2.7.12-1~16.04) ... |
| 01-Dec-2019 07:44:24 | Setting up libjbig0:amd64 (2.1-3.1) ... |
| 01-Dec-2019 07:44:24 | Setting up libmpfr4:amd64 (3.1.4-1) ... |
| 01-Dec-2019 07:44:24 | Setting up libmpc3:amd64 (1.0.3-1) ... |
| 01-Dec-2019 07:44:24 | Setting up tzdata (2019c-0ubuntu0.16.04) ... |
| 01-Dec-2019 07:44:24 | debconf: unable to initialize frontend: Dialog |
| 01-Dec-2019 07:44:24 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 01-Dec-2019 07:44:24 | debconf: falling back to frontend: Readline |
| 01-Dec-2019 07:44:24 | |
| 01-Dec-2019 07:44:24 | Current default time zone: 'Etc/UTC' |
| 01-Dec-2019 07:44:24 | Local time is now: Sun Dec 1 13:44:24 UTC 2019. |
| 01-Dec-2019 07:44:24 | Universal Time is now: Sun Dec 1 13:44:24 UTC 2019. |
| 01-Dec-2019 07:44:24 | Run 'dpkg-reconfigure tzdata' if you wish to change it. |
| 01-Dec-2019 07:44:24 | |
| 01-Dec-2019 07:44:24 | Setting up bzip2 (1.0.6-8ubuntu0.2) ... |
| 01-Dec-2019 07:44:25 | Setting up libmagic1:amd64 (1:5.25-2ubuntu1.3) ... |
| 01-Dec-2019 07:44:25 | Setting up file (1:5.25-2ubuntu1.3) ... |
| 01-Dec-2019 07:44:25 | Setting up netbase (5.3) ... |
| 01-Dec-2019 07:44:25 | Setting up openssl (1.0.2g-1ubuntu4.15) ... |
| 01-Dec-2019 07:44:25 | Setting up ca-certificates (20170717~16.04.2) ... |
| 01-Dec-2019 07:44:26 | debconf: unable to initialize frontend: Dialog |
| 01-Dec-2019 07:44:26 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 01-Dec-2019 07:44:26 | debconf: falling back to frontend: Readline |
| 01-Dec-2019 07:44:27 | Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... |
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| 01-Dec-2019 07:44:29 | update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode |
| 01-Dec-2019 07:44:29 | Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... |
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| 01-Dec-2019 07:44:32 | Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... |
| 01-Dec-2019 07:44:32 | Setting up gcc-5 (5.4.0-6ubuntu1~16.04.12) ... |
| 01-Dec-2019 07:44:32 | Setting up gcc (4:5.3.1-1ubuntu1) ... |
| 01-Dec-2019 07:44:33 | Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ... |
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| 01-Dec-2019 07:44:33 | update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode |
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| 01-Dec-2019 07:44:33 | update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode |
| 01-Dec-2019 07:44:33 | Setting up patch (2.7.5-1ubuntu0.16.04.2) ... |
| 01-Dec-2019 07:44:34 | Setting up dpkg-dev (1.18.4ubuntu1.6) ... |
| 01-Dec-2019 07:44:34 | Setting up build-essential (12.1ubuntu2) ... |
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| 01-Dec-2019 07:44:34 | Setting up intltool-debian (0.35.0+20060710.4) ... |
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| 01-Dec-2019 07:44:38 | Setting up python-six (1.10.0-3) ... |
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| 01-Dec-2019 07:44:41 | Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.12) ... |
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| 01-Dec-2019 07:44:42 | Setting up gfortran (4:5.3.1-1ubuntu1) ... |
| 01-Dec-2019 07:44:42 | update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode |
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| 01-Dec-2019 07:44:42 | Setting up icu-devtools (55.1-7ubuntu0.4) ... |
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| 01-Dec-2019 07:44:42 | update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode |
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| 01-Dec-2019 07:44:43 | update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode |
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| 01-Dec-2019 07:44:44 | Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... |
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| 01-Dec-2019 07:44:45 | update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode |
| 01-Dec-2019 07:44:45 | Setting up liblapack-dev (3.6.0-2ubuntu2) ... |
| 01-Dec-2019 07:44:45 | update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode |
| 01-Dec-2019 07:44:45 | Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... |
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| 01-Dec-2019 07:44:46 | Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... |
| 01-Dec-2019 07:44:47 | debconf: unable to initialize frontend: Dialog |
| 01-Dec-2019 07:44:47 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 01-Dec-2019 07:44:47 | debconf: falling back to frontend: Readline |
| 01-Dec-2019 07:44:47 | |
| 01-Dec-2019 07:44:47 | Creating config file /etc/papersize with new version |
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| 01-Dec-2019 07:44:47 | Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
| 01-Dec-2019 07:44:48 | Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
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| 01-Dec-2019 07:44:48 | Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... |
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| 01-Dec-2019 07:44:48 | Setting up pkg-config (0.29.1-0ubuntu1) ... |
| 01-Dec-2019 07:44:49 | Setting up zip (3.0-11) ... |
| 01-Dec-2019 07:44:49 | Setting up unzip (6.0-20ubuntu1) ... |
| 01-Dec-2019 07:44:49 | Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
| 01-Dec-2019 07:44:49 | Setting up r-base-core (3.4.4-1xenial0) ... |
| 01-Dec-2019 07:44:50 | debconf: unable to initialize frontend: Dialog |
| 01-Dec-2019 07:44:50 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 01-Dec-2019 07:44:50 | debconf: falling back to frontend: Readline |
| 01-Dec-2019 07:44:50 | |
| 01-Dec-2019 07:44:50 | Creating config file /etc/R/Renviron with new version |
| 01-Dec-2019 07:44:50 | Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
| 01-Dec-2019 07:44:50 | Setting up debhelper (9.20160115ubuntu3) ... |
| 01-Dec-2019 07:44:51 | Setting up libwww-perl (6.15-1) ... |
| 01-Dec-2019 07:44:51 | Setting up libxml-parser-perl (2.44-1build1) ... |
| 01-Dec-2019 07:44:51 | Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... |
| 01-Dec-2019 07:44:51 | Setting up dh-translations (129) ... |
| 01-Dec-2019 07:44:51 | Setting up cdbs (0.4.130ubuntu2) ... |
| 01-Dec-2019 07:44:51 | Setting up r-base-dev (3.4.4-1xenial0) ... |
| 01-Dec-2019 07:44:51 | Setting up dh-strip-nondeterminism (0.015-1) ... |
| 01-Dec-2019 07:44:52 | Setting up liblwp-protocol-https-perl (6.06-2) ... |
| 01-Dec-2019 07:44:52 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 01-Dec-2019 07:44:52 | Processing triggers for systemd (229-4ubuntu21.22) ... |
| 01-Dec-2019 07:44:52 | Processing triggers for ca-certificates (20170717~16.04.2) ... |
| 01-Dec-2019 07:44:52 | Updating certificates in /etc/ssl/certs... |
| 01-Dec-2019 07:44:54 | 148 added, 0 removed; done. |
| 01-Dec-2019 07:44:54 | Running hooks in /etc/ca-certificates/update.d... |
| 01-Dec-2019 07:44:54 | done. |
| 01-Dec-2019 07:44:54 | Installing package into '/usr/local/lib/R/site-library' |
| 01-Dec-2019 07:44:54 | (as 'lib' is unspecified) |
| 01-Dec-2019 07:44:55 | trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' |
| 01-Dec-2019 07:44:55 | Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) |
| 01-Dec-2019 07:44:55 | ================================================== |
| 01-Dec-2019 07:44:55 | downloaded 1.0 MB |
| 01-Dec-2019 07:44:55 | |
| 01-Dec-2019 07:44:55 | * installing *source* package 'jsonlite' ... |
| 01-Dec-2019 07:44:55 | ** package 'jsonlite' successfully unpacked and MD5 sums checked |
| 01-Dec-2019 07:44:55 | ** libs |
| 01-Dec-2019 07:44:55 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o |
| 01-Dec-2019 07:44:55 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o |
| 01-Dec-2019 07:44:55 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o |
| 01-Dec-2019 07:44:56 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o |
| 01-Dec-2019 07:44:57 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o |
| 01-Dec-2019 07:44:58 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o |
| 01-Dec-2019 07:44:58 | ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o |
| 01-Dec-2019 07:44:58 | g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR |
| 01-Dec-2019 07:44:58 | installing to /usr/local/lib/R/site-library/jsonlite/libs |
| 01-Dec-2019 07:44:58 | ** R |
| 01-Dec-2019 07:44:58 | ** inst |
| 01-Dec-2019 07:44:58 | ** preparing package for lazy loading |
| 01-Dec-2019 07:44:58 | ** help |
| 01-Dec-2019 07:44:58 | *** installing help indices |
| 01-Dec-2019 07:44:58 | ** building package indices |
| 01-Dec-2019 07:44:58 | ** installing vignettes |
| 01-Dec-2019 07:44:58 | ** testing if installed package can be loaded |
| 01-Dec-2019 07:44:58 | * DONE (jsonlite) |
| 01-Dec-2019 07:44:58 | |
| 01-Dec-2019 07:44:58 | The downloaded source packages are in |
| 01-Dec-2019 07:44:58 | '/tmp/RtmpciQJC5/downloaded_packages' |
| 01-Dec-2019 07:44:58 | [1] "/usr/local/lib/R/site-library/jsonlite" |
| 01-Dec-2019 07:45:06 | Removing intermediate container be19944ebf3c |
| 01-Dec-2019 07:45:06 | ---> fc3fe06d852c |
| 01-Dec-2019 07:45:06 | Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ |
| 01-Dec-2019 07:45:06 | ---> 3de14977c939 |
| 01-Dec-2019 07:45:06 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:45:06 | ---> Running in bcdc7e387552 |
| 01-Dec-2019 07:45:07 | Removing intermediate container bcdc7e387552 |
| 01-Dec-2019 07:45:07 | ---> 1c324cd235b1 |
| 01-Dec-2019 07:45:07 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 01-Dec-2019 07:45:07 | ---> Running in 274128062bf0 |
| 01-Dec-2019 07:45:07 | Removing intermediate container 274128062bf0 |
| 01-Dec-2019 07:45:07 | ---> b052c5a00deb |
| 01-Dec-2019 07:45:07 | Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:45:07 | ---> Running in 1644120674d3 |
| 01-Dec-2019 07:45:08 | Removing intermediate container 1644120674d3 |
| 01-Dec-2019 07:45:08 | ---> c566eee0f099 |
| 01-Dec-2019 07:45:08 | Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 01-Dec-2019 07:45:08 | ---> Running in 318ab3d89bb5 |
| 01-Dec-2019 07:45:09 | Removing intermediate container 318ab3d89bb5 |
| 01-Dec-2019 07:45:09 | ---> ed28db4e0503 |
| 01-Dec-2019 07:45:09 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
| 01-Dec-2019 07:45:09 | ---> Running in 499e06920c6b |
| 01-Dec-2019 07:45:09 | Removing intermediate container 499e06920c6b |
| 01-Dec-2019 07:45:09 | ---> 10da96b1af2d |
| 01-Dec-2019 07:45:09 | Step 11/11 : CMD python r_extractor.py |
| 01-Dec-2019 07:45:09 | ---> Running in 0416827b7713 |
| 01-Dec-2019 07:45:10 | Removing intermediate container 0416827b7713 |
| 01-Dec-2019 07:45:10 | ---> 40b7441754cc |
| 01-Dec-2019 07:45:10 | Successfully built 40b7441754cc |
| 01-Dec-2019 07:45:10 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
| 01-Dec-2019 07:45:10 | Sending build context to Docker daemon 9.216kB |
| 01-Dec-2019 07:45:10 | |
| 01-Dec-2019 07:45:10 | Step 1/3 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:45:10 | Step 2/3 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild |
| 01-Dec-2019 07:45:10 | # Executing 5 build triggers |
| 01-Dec-2019 07:45:10 | ---> Running in fb4d7021d168 |
| 01-Dec-2019 07:45:12 | Removing intermediate container fb4d7021d168 |
| 01-Dec-2019 07:45:12 | ---> Running in e3686e395451 |
| 01-Dec-2019 07:45:14 | Removing intermediate container e3686e395451 |
| 01-Dec-2019 07:45:15 | ---> 1da0549fb38e |
| 01-Dec-2019 07:45:15 | Step 3/3 : ENV MAIN_SCRIPT="wordcount.py" |
| 01-Dec-2019 07:45:15 | ---> Running in 0e91598f18f6 |
| 01-Dec-2019 07:45:15 | Removing intermediate container 0e91598f18f6 |
| 01-Dec-2019 07:45:15 | ---> 712594098076 |
| 01-Dec-2019 07:45:15 | Successfully built 712594098076 |
| 01-Dec-2019 07:45:15 | Successfully tagged clowder/extractors-wordcount:latest |
| 01-Dec-2019 07:45:15 | Sending build context to Docker daemon 5.12kB |
| 01-Dec-2019 07:45:15 | |
| 01-Dec-2019 07:45:15 | Step 1/4 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:45:15 | Step 2/4 : FROM clowder/extractors-simple-extractor${PYCLOWDER_PYTHON}:onbuild |
| 01-Dec-2019 07:45:15 | # Executing 5 build triggers |
| 01-Dec-2019 07:45:16 | ---> Running in 8f3ee5a857be |
| 01-Dec-2019 07:45:18 | Removing intermediate container 8f3ee5a857be |
| 01-Dec-2019 07:45:19 | ---> Running in fbe7cc2ff769 |
| 01-Dec-2019 07:45:20 | Removing intermediate container fbe7cc2ff769 |
| 01-Dec-2019 07:45:21 | ---> e6eedd360d46 |
| 01-Dec-2019 07:45:21 | Step 3/4 : ENV EXTRACTION_FUNC="wordcount" |
| 01-Dec-2019 07:45:21 | ---> Running in 9f43d486c50a |
| 01-Dec-2019 07:45:21 | Removing intermediate container 9f43d486c50a |
| 01-Dec-2019 07:45:21 | ---> b9688e1e5d84 |
| 01-Dec-2019 07:45:21 | Step 4/4 : ENV EXTRACTION_MODULE="wordcount" |
| 01-Dec-2019 07:45:21 | ---> Running in 98711b5c8f65 |
| 01-Dec-2019 07:45:22 | Removing intermediate container 98711b5c8f65 |
| 01-Dec-2019 07:45:22 | ---> 24d6064fc5f0 |
| 01-Dec-2019 07:45:22 | Successfully built 24d6064fc5f0 |
| 01-Dec-2019 07:45:22 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
| 01-Dec-2019 07:45:22 | Sending build context to Docker daemon 5.12kB |
| 01-Dec-2019 07:45:22 | |
| 01-Dec-2019 07:45:22 | Step 1/3 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:45:22 | Step 2/3 : FROM clowder/extractors-simple-r-extractor${PYCLOWDER_PYTHON}:onbuild |
| 01-Dec-2019 07:45:22 | # Executing 5 build triggers |
| 01-Dec-2019 07:45:23 | ---> Running in cb0ba471ebe2 |
| 01-Dec-2019 07:45:24 | Removing intermediate container cb0ba471ebe2 |
| 01-Dec-2019 07:45:25 | ---> Running in eea84ddb72fb |
| 01-Dec-2019 07:45:27 | Removing intermediate container eea84ddb72fb |
| 01-Dec-2019 07:45:27 | ---> c7094a27ff8d |
| 01-Dec-2019 07:45:27 | Step 3/3 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
| 01-Dec-2019 07:45:27 | ---> Running in d517cc0c953d |
| 01-Dec-2019 07:45:27 | Removing intermediate container d517cc0c953d |
| 01-Dec-2019 07:45:27 | ---> 3f1f7b7334de |
| 01-Dec-2019 07:45:27 | Successfully built 3f1f7b7334de |
| 01-Dec-2019 07:45:27 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
| 01-Dec-2019 07:45:27 | Sending build context to Docker daemon 8.192kB |
| 01-Dec-2019 07:45:27 | |
| 01-Dec-2019 07:45:28 | Step 1/7 : FROM python:3.5 |
| 01-Dec-2019 07:45:28 | 3.5: Pulling from library/python |
| 01-Dec-2019 07:45:28 | 16ea0e8c8879: Pulling fs layer |
| 01-Dec-2019 07:45:28 | 50024b0106d5: Pulling fs layer |
| 01-Dec-2019 07:45:28 | ff95660c6937: Pulling fs layer |
| 01-Dec-2019 07:45:28 | 9c7d0e5c0bc2: Pulling fs layer |
| 01-Dec-2019 07:45:28 | 29c4fb388fdf: Pulling fs layer |
| 01-Dec-2019 07:45:28 | 49a8841b38a3: Pulling fs layer |
| 01-Dec-2019 07:45:28 | a0a6062c45f4: Pulling fs layer |
| 01-Dec-2019 07:45:28 | 314102e5cfb7: Pulling fs layer |
| 01-Dec-2019 07:45:28 | b84da28b0e51: Pulling fs layer |
| 01-Dec-2019 07:45:28 | 49a8841b38a3: Waiting |
| 01-Dec-2019 07:45:28 | 314102e5cfb7: Waiting |
| 01-Dec-2019 07:45:28 | 9c7d0e5c0bc2: Waiting |
| 01-Dec-2019 07:45:28 | 29c4fb388fdf: Waiting |
| 01-Dec-2019 07:45:28 | a0a6062c45f4: Waiting |
| 01-Dec-2019 07:45:28 | b84da28b0e51: Waiting |
| 01-Dec-2019 07:45:29 | 50024b0106d5: Verifying Checksum |
| 01-Dec-2019 07:45:29 | 50024b0106d5: Download complete |
| 01-Dec-2019 07:45:29 | ff95660c6937: Verifying Checksum |
| 01-Dec-2019 07:45:29 | ff95660c6937: Download complete |
| 01-Dec-2019 07:45:30 | 16ea0e8c8879: Verifying Checksum |
| 01-Dec-2019 07:45:30 | 16ea0e8c8879: Download complete |
| 01-Dec-2019 07:45:30 | 49a8841b38a3: Verifying Checksum |
| 01-Dec-2019 07:45:30 | 49a8841b38a3: Download complete |
| 01-Dec-2019 07:45:30 | 9c7d0e5c0bc2: Verifying Checksum |
| 01-Dec-2019 07:45:30 | 9c7d0e5c0bc2: Download complete |
| 01-Dec-2019 07:45:30 | 314102e5cfb7: Verifying Checksum |
| 01-Dec-2019 07:45:30 | 314102e5cfb7: Download complete |
| 01-Dec-2019 07:45:31 | b84da28b0e51: Verifying Checksum |
| 01-Dec-2019 07:45:31 | b84da28b0e51: Download complete |
| 01-Dec-2019 07:45:31 | a0a6062c45f4: Verifying Checksum |
| 01-Dec-2019 07:45:31 | a0a6062c45f4: Download complete |
| 01-Dec-2019 07:45:33 | 16ea0e8c8879: Pull complete |
| 01-Dec-2019 07:45:34 | 50024b0106d5: Pull complete |
| 01-Dec-2019 07:45:35 | 29c4fb388fdf: Verifying Checksum |
| 01-Dec-2019 07:45:35 | 29c4fb388fdf: Download complete |
| 01-Dec-2019 07:45:40 | ff95660c6937: Pull complete |
| 01-Dec-2019 07:45:42 | 9c7d0e5c0bc2: Pull complete |
| 01-Dec-2019 07:45:50 | 29c4fb388fdf: Pull complete |
| 01-Dec-2019 07:45:51 | 49a8841b38a3: Pull complete |
| 01-Dec-2019 07:45:55 | a0a6062c45f4: Pull complete |
| 01-Dec-2019 07:45:57 | 314102e5cfb7: Pull complete |
| 01-Dec-2019 07:45:58 | b84da28b0e51: Pull complete |
| 01-Dec-2019 07:45:58 | Digest: sha256:e7fb3ab522e4e6e9ffe78b30086c15025f53650c6d693e72d1f1b9e2e68b40e4 |
| 01-Dec-2019 07:45:58 | Status: Downloaded newer image for python:3.5 |
| 01-Dec-2019 07:45:58 | ---> 5be81bc3f1e6 |
| 01-Dec-2019 07:45:58 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
| 01-Dec-2019 07:45:59 | ---> Running in 879f2e691a12 |
| 01-Dec-2019 07:45:59 | Removing intermediate container 879f2e691a12 |
| 01-Dec-2019 07:45:59 | ---> 776d9bc25f0f |
| 01-Dec-2019 07:45:59 | Step 3/7 : EXPOSE 9999 |
| 01-Dec-2019 07:45:59 | ---> Running in cf6edcb0766b |
| 01-Dec-2019 07:46:00 | Removing intermediate container cf6edcb0766b |
| 01-Dec-2019 07:46:00 | ---> 3dd4e3666905 |
| 01-Dec-2019 07:46:00 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
| 01-Dec-2019 07:46:00 | ---> Running in 0ee35855d6be |
| 01-Dec-2019 07:46:02 | Collecting pika==0.11.2 |
| 01-Dec-2019 07:46:02 | Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) |
| 01-Dec-2019 07:46:02 | Collecting requests==2.18.4 |
| 01-Dec-2019 07:46:02 | Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) |
| 01-Dec-2019 07:46:02 | Collecting idna<2.7,>=2.5 |
| 01-Dec-2019 07:46:02 | Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) |
| 01-Dec-2019 07:46:02 | Collecting certifi>=2017.4.17 |
| 01-Dec-2019 07:46:02 | Downloading https://files.pythonhosted.org/packages/b9/63/df50cac98ea0d5b006c55a399c3bf1db9da7b5a24de7890bc9cfd5dd9e99/certifi-2019.11.28-py2.py3-none-any.whl (156kB) |
| 01-Dec-2019 07:46:03 | Collecting urllib3<1.23,>=1.21.1 |
| 01-Dec-2019 07:46:03 | Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) |
| 01-Dec-2019 07:46:03 | Collecting chardet<3.1.0,>=3.0.2 |
| 01-Dec-2019 07:46:03 | Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) |
| 01-Dec-2019 07:46:03 | Installing collected packages: pika, idna, certifi, urllib3, chardet, requests |
| 01-Dec-2019 07:46:03 | Successfully installed certifi-2019.11.28 chardet-3.0.4 idna-2.6 pika-0.11.2 requests-2.18.4 urllib3-1.22 |
| 01-Dec-2019 07:46:05 | Removing intermediate container 0ee35855d6be |
| 01-Dec-2019 07:46:05 | ---> 553785aaf315 |
| 01-Dec-2019 07:46:05 | Step 5/7 : WORKDIR /src |
| 01-Dec-2019 07:46:05 | ---> Running in 7ad623629e3f |
| 01-Dec-2019 07:46:05 | Removing intermediate container 7ad623629e3f |
| 01-Dec-2019 07:46:05 | ---> a12d43591beb |
| 01-Dec-2019 07:46:05 | Step 6/7 : COPY monitor.py /src/ |
| 01-Dec-2019 07:46:06 | ---> 9107ae1a6ce9 |
| 01-Dec-2019 07:46:06 | Step 7/7 : CMD python monitor.py |
| 01-Dec-2019 07:46:06 | ---> Running in ee5920980335 |
| 01-Dec-2019 07:46:06 | Removing intermediate container ee5920980335 |
| 01-Dec-2019 07:46:06 | ---> f12ad9a235b0 |
| 01-Dec-2019 07:46:06 | Successfully built f12ad9a235b0 |
| 01-Dec-2019 07:46:06 | Successfully tagged clowder/extractors-monitor:latest |
| 01-Dec-2019 07:46:06 | Finished task 'docker build' with result: Success |
| 01-Dec-2019 07:46:06 | Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 01-Dec-2019 07:46:06 | Beginning to execute external process for build 'Clowder - pyclowder2 - docker-build-upgrade-pip - Default Job #1 (CATS-PYC2105-JOB1-1)' ... running command line: /bin/sh release.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2105-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=docker-build-upgrade-pip bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=docker-build-upgrade-pip bamboo_repository_revision_number=ef55c798a38049d1889c3283adaf7fa63ca180ae bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2105-JOB1-1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2105-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC2105-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=pyclowder2 bamboo_planRepository_name=pyclowder2 bamboo_buildNumber=1 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_shortJobName=Default Job bamboo_capability_system_builder_command_python3_6=/usr/bin/python3.6 bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC2105-JOB1-1 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=143032321 bamboo_planName=Clowder - pyclowder2 - docker-build-upgrade-pip bamboo_repository_179109891_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_6=/home/bamboo/bamboo-agent-home/temp/CATS-PYC2105-JOB1-1-ScriptBuildTask-2520226215210995388.sh bamboo_shortPlanKey=PYC2105 bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=ef55c798a38049d1889c3283adaf7fa63ca180ae bamboo_buildTimeStamp=2019-12-01T07:34:44.998-06:00 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC2105-JOB1-1-ScriptBuildTask-2284821256874184438.sh bamboo_repository_179109891_git_username= bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh bamboo_repository_git_branch=docker-build-upgrade-pip bamboo_buildResultKey=CATS-PYC2105-JOB1-1 bamboo_repository_branch_name=docker-build-upgrade-pip bamboo_buildPlanName=Clowder - pyclowder2 - docker-build-upgrade-pip - Default Job bamboo_planRepository_1_revision=ef55c798a38049d1889c3283adaf7fa63ca180ae bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=pyclowder2 bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_repository_179109891_branch_name=docker-build-upgrade-pip bamboo_planRepository_branch=docker-build-upgrade-pip bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=docker-build-upgrade-pip bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=docker-build-upgrade-pip bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-178978819 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_repository_179109891_revision_number=ef55c798a38049d1889c3283adaf7fa63ca180ae bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_node_Node_js_v9_3_0=/home/bamboo/node-v9.3.0/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_repository_179109891_git_branch=docker-build-upgrade-pip bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2105-JOB1 bamboo_planKey=CATS-PYC2105 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=docker-build-upgrade-pip bamboo_repository_179109891_name=pyclowder2 |
| 01-Dec-2019 07:46:06 | Sending build context to Docker daemon 284.7kB |
| 01-Dec-2019 07:46:06 | |
| 01-Dec-2019 07:46:06 | Step 1/10 : FROM ubuntu:16.04 |
| 01-Dec-2019 07:46:06 | ---> 56bab49eef2e |
| 01-Dec-2019 07:46:06 | Step 2/10 : ARG PYTHON_VERSION="2.7" |
| 01-Dec-2019 07:46:06 | ---> Using cache |
| 01-Dec-2019 07:46:06 | ---> 93e46200d603 |
| 01-Dec-2019 07:46:06 | Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 01-Dec-2019 07:46:06 | ---> Using cache |
| 01-Dec-2019 07:46:06 | ---> e24243e39985 |
| 01-Dec-2019 07:46:06 | Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && pip install --upgrade pip && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py |
| 01-Dec-2019 07:46:06 | ---> Using cache |
| 01-Dec-2019 07:46:06 | ---> a16f8db5df3c |
| 01-Dec-2019 07:46:06 | Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 01-Dec-2019 07:46:06 | ---> Using cache |
| 01-Dec-2019 07:46:06 | ---> 06caffd64802 |
| 01-Dec-2019 07:46:06 | Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ |
| 01-Dec-2019 07:46:06 | ---> Using cache |
| 01-Dec-2019 07:46:06 | ---> 24e7aa1f6ef0 |
| 01-Dec-2019 07:46:06 | Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 01-Dec-2019 07:46:06 | ---> Using cache |
| 01-Dec-2019 07:46:06 | ---> b76d2b81879a |
| 01-Dec-2019 07:46:06 | Step 8/10 : WORKDIR /home/clowder |
| 01-Dec-2019 07:46:06 | ---> Using cache |
| 01-Dec-2019 07:46:06 | ---> a52d3c87a8fd |
| 01-Dec-2019 07:46:06 | Step 9/10 : COPY notifications.json /home/clowder/ |
| 01-Dec-2019 07:46:06 | ---> Using cache |
| 01-Dec-2019 07:46:06 | ---> 3a8d882b39e6 |
| 01-Dec-2019 07:46:06 | Step 10/10 : CMD python "./${MAIN_SCRIPT}" |
| 01-Dec-2019 07:46:06 | ---> Using cache |
| 01-Dec-2019 07:46:06 | ---> 4f0abdafa099 |
| 01-Dec-2019 07:46:06 | Successfully built 4f0abdafa099 |
| 01-Dec-2019 07:46:07 | Successfully tagged clowder/pyclowder:latest |
| 01-Dec-2019 07:46:07 | Sending build context to Docker daemon 282.6kB |
| 01-Dec-2019 07:46:07 | |
| 01-Dec-2019 07:46:07 | Step 1/7 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:07 | Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
| 01-Dec-2019 07:46:07 | ---> 4f0abdafa099 |
| 01-Dec-2019 07:46:07 | Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> b8b59ed02b34 |
| 01-Dec-2019 07:46:07 | Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 307bc92590a2 |
| 01-Dec-2019 07:46:07 | Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 70bc834459e2 |
| 01-Dec-2019 07:46:07 | Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> d715b7b081cd |
| 01-Dec-2019 07:46:07 | Step 7/7 : ONBUILD ADD . /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> ce03cb4962f1 |
| 01-Dec-2019 07:46:07 | Successfully built ce03cb4962f1 |
| 01-Dec-2019 07:46:07 | Successfully tagged clowder/pyclowder:onbuild |
| 01-Dec-2019 07:46:07 | Sending build context to Docker daemon 12.8kB |
| 01-Dec-2019 07:46:07 | |
| 01-Dec-2019 07:46:07 | Step 1/6 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:07 | Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild |
| 01-Dec-2019 07:46:07 | # Executing 5 build triggers |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 82fa242b6b52 |
| 01-Dec-2019 07:46:07 | Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 6eaafe3f472c |
| 01-Dec-2019 07:46:07 | Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> f31c18cd2a5c |
| 01-Dec-2019 07:46:07 | Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 7892c997afe0 |
| 01-Dec-2019 07:46:07 | Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 4b61c130122b |
| 01-Dec-2019 07:46:07 | Successfully built 4b61c130122b |
| 01-Dec-2019 07:46:07 | Successfully tagged clowder/extractors-binary-preview:onbuild |
| 01-Dec-2019 07:46:07 | Sending build context to Docker daemon 6.656kB |
| 01-Dec-2019 07:46:07 | |
| 01-Dec-2019 07:46:07 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:07 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
| 01-Dec-2019 07:46:07 | ---> 4f0abdafa099 |
| 01-Dec-2019 07:46:07 | Step 3/11 : ENV EXTRACTION_FUNC="" |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 2f87d66875a5 |
| 01-Dec-2019 07:46:07 | Step 4/11 : ENV EXTRACTION_MODULE="" |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 14a3fac6b001 |
| 01-Dec-2019 07:46:07 | Step 5/11 : COPY simple_extractor.py . |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 0116b67027e8 |
| 01-Dec-2019 07:46:07 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 599660aaf264 |
| 01-Dec-2019 07:46:07 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 3cbd78e64d8c |
| 01-Dec-2019 07:46:07 | Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> c598cc816b80 |
| 01-Dec-2019 07:46:07 | Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 259981581bd8 |
| 01-Dec-2019 07:46:07 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 626e88dc83c4 |
| 01-Dec-2019 07:46:07 | Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 8007029907fd |
| 01-Dec-2019 07:46:07 | Successfully built 8007029907fd |
| 01-Dec-2019 07:46:07 | Successfully tagged clowder/extractors-simple-extractor:onbuild |
| 01-Dec-2019 07:46:07 | Sending build context to Docker daemon 13.31kB |
| 01-Dec-2019 07:46:07 | |
| 01-Dec-2019 07:46:07 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:07 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
| 01-Dec-2019 07:46:07 | ---> 4f0abdafa099 |
| 01-Dec-2019 07:46:07 | Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> fc8d4e715461 |
| 01-Dec-2019 07:46:07 | Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 6e9e078ecdb3 |
| 01-Dec-2019 07:46:07 | Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 0f44ff51f1db |
| 01-Dec-2019 07:46:07 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> a310bd0290b9 |
| 01-Dec-2019 07:46:07 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 1eafc3025a08 |
| 01-Dec-2019 07:46:07 | Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> b987f6301c9b |
| 01-Dec-2019 07:46:07 | Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 39c2940bdf36 |
| 01-Dec-2019 07:46:07 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 8137d9a52bcb |
| 01-Dec-2019 07:46:07 | Step 11/11 : CMD python r_extractor.py |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 24503eaa7a0a |
| 01-Dec-2019 07:46:07 | Successfully built 24503eaa7a0a |
| 01-Dec-2019 07:46:07 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
| 01-Dec-2019 07:46:07 | Sending build context to Docker daemon 284.7kB |
| 01-Dec-2019 07:46:07 | |
| 01-Dec-2019 07:46:07 | Step 1/10 : FROM ubuntu:16.04 |
| 01-Dec-2019 07:46:07 | ---> 56bab49eef2e |
| 01-Dec-2019 07:46:07 | Step 2/10 : ARG PYTHON_VERSION="2.7" |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 93e46200d603 |
| 01-Dec-2019 07:46:07 | Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 6f4761625f1e |
| 01-Dec-2019 07:46:07 | Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && pip install --upgrade pip && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> a79d45a2a5fd |
| 01-Dec-2019 07:46:07 | Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 63fdc1cf5ef3 |
| 01-Dec-2019 07:46:07 | Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 33740b8edb6f |
| 01-Dec-2019 07:46:07 | Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 6d0824da3340 |
| 01-Dec-2019 07:46:07 | Step 8/10 : WORKDIR /home/clowder |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> aeed12fffa49 |
| 01-Dec-2019 07:46:07 | Step 9/10 : COPY notifications.json /home/clowder/ |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> c4700a8f68bb |
| 01-Dec-2019 07:46:07 | Step 10/10 : CMD python "./${MAIN_SCRIPT}" |
| 01-Dec-2019 07:46:07 | ---> Using cache |
| 01-Dec-2019 07:46:07 | ---> 7006ab85b609 |
| 01-Dec-2019 07:46:07 | Successfully built 7006ab85b609 |
| 01-Dec-2019 07:46:07 | Successfully tagged clowder/pyclowder-python3:latest |
| 01-Dec-2019 07:46:08 | Sending build context to Docker daemon 282.6kB |
| 01-Dec-2019 07:46:08 | |
| 01-Dec-2019 07:46:08 | Step 1/7 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:08 | Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
| 01-Dec-2019 07:46:08 | ---> 7006ab85b609 |
| 01-Dec-2019 07:46:08 | Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 6d1ff63ad7f2 |
| 01-Dec-2019 07:46:08 | Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 4211289d207f |
| 01-Dec-2019 07:46:08 | Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> df9915138fe9 |
| 01-Dec-2019 07:46:08 | Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 3d7388f05ee3 |
| 01-Dec-2019 07:46:08 | Step 7/7 : ONBUILD ADD . /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> ed8e9de7f486 |
| 01-Dec-2019 07:46:08 | Successfully built ed8e9de7f486 |
| 01-Dec-2019 07:46:08 | Successfully tagged clowder/pyclowder-python3:onbuild |
| 01-Dec-2019 07:46:08 | Sending build context to Docker daemon 12.8kB |
| 01-Dec-2019 07:46:08 | |
| 01-Dec-2019 07:46:08 | Step 1/6 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:08 | Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild |
| 01-Dec-2019 07:46:08 | # Executing 5 build triggers |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> bc01e117a869 |
| 01-Dec-2019 07:46:08 | Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 992499553391 |
| 01-Dec-2019 07:46:08 | Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 13aa1b8178fc |
| 01-Dec-2019 07:46:08 | Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 8db34a4a8272 |
| 01-Dec-2019 07:46:08 | Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 1efaac141c12 |
| 01-Dec-2019 07:46:08 | Successfully built 1efaac141c12 |
| 01-Dec-2019 07:46:08 | Successfully tagged clowder/extractors-binary-preview-python3:onbuild |
| 01-Dec-2019 07:46:08 | Sending build context to Docker daemon 6.656kB |
| 01-Dec-2019 07:46:08 | |
| 01-Dec-2019 07:46:08 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:08 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
| 01-Dec-2019 07:46:08 | ---> 7006ab85b609 |
| 01-Dec-2019 07:46:08 | Step 3/11 : ENV EXTRACTION_FUNC="" |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 298e09b12726 |
| 01-Dec-2019 07:46:08 | Step 4/11 : ENV EXTRACTION_MODULE="" |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 00ac3d41d739 |
| 01-Dec-2019 07:46:08 | Step 5/11 : COPY simple_extractor.py . |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> c93f8efe0cdb |
| 01-Dec-2019 07:46:08 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 3a4f472ce8f5 |
| 01-Dec-2019 07:46:08 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> cc75a114a3b3 |
| 01-Dec-2019 07:46:08 | Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> dfe7c19f67fa |
| 01-Dec-2019 07:46:08 | Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 626d85817eef |
| 01-Dec-2019 07:46:08 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> aab0463e9b56 |
| 01-Dec-2019 07:46:08 | Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 03ae8a94c93c |
| 01-Dec-2019 07:46:08 | Successfully built 03ae8a94c93c |
| 01-Dec-2019 07:46:08 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
| 01-Dec-2019 07:46:08 | Sending build context to Docker daemon 13.31kB |
| 01-Dec-2019 07:46:08 | |
| 01-Dec-2019 07:46:08 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:08 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
| 01-Dec-2019 07:46:08 | ---> 7006ab85b609 |
| 01-Dec-2019 07:46:08 | Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> a7e8d647e7f8 |
| 01-Dec-2019 07:46:08 | Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> fc3fe06d852c |
| 01-Dec-2019 07:46:08 | Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 3de14977c939 |
| 01-Dec-2019 07:46:08 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 1c324cd235b1 |
| 01-Dec-2019 07:46:08 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> b052c5a00deb |
| 01-Dec-2019 07:46:08 | Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> c566eee0f099 |
| 01-Dec-2019 07:46:08 | Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> ed28db4e0503 |
| 01-Dec-2019 07:46:08 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 10da96b1af2d |
| 01-Dec-2019 07:46:08 | Step 11/11 : CMD python r_extractor.py |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 40b7441754cc |
| 01-Dec-2019 07:46:08 | Successfully built 40b7441754cc |
| 01-Dec-2019 07:46:08 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
| 01-Dec-2019 07:46:08 | Sending build context to Docker daemon 9.216kB |
| 01-Dec-2019 07:46:08 | |
| 01-Dec-2019 07:46:08 | Step 1/3 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:08 | Step 2/3 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild |
| 01-Dec-2019 07:46:08 | # Executing 5 build triggers |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 1da0549fb38e |
| 01-Dec-2019 07:46:08 | Step 3/3 : ENV MAIN_SCRIPT="wordcount.py" |
| 01-Dec-2019 07:46:08 | ---> Using cache |
| 01-Dec-2019 07:46:08 | ---> 712594098076 |
| 01-Dec-2019 07:46:08 | Successfully built 712594098076 |
| 01-Dec-2019 07:46:08 | Successfully tagged clowder/extractors-wordcount:latest |
| 01-Dec-2019 07:46:08 | Sending build context to Docker daemon 5.12kB |
| 01-Dec-2019 07:46:08 | |
| 01-Dec-2019 07:46:09 | Step 1/4 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:09 | Step 2/4 : FROM clowder/extractors-simple-extractor${PYCLOWDER_PYTHON}:onbuild |
| 01-Dec-2019 07:46:09 | # Executing 5 build triggers |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> e6eedd360d46 |
| 01-Dec-2019 07:46:09 | Step 3/4 : ENV EXTRACTION_FUNC="wordcount" |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> b9688e1e5d84 |
| 01-Dec-2019 07:46:09 | Step 4/4 : ENV EXTRACTION_MODULE="wordcount" |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> 24d6064fc5f0 |
| 01-Dec-2019 07:46:09 | Successfully built 24d6064fc5f0 |
| 01-Dec-2019 07:46:09 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
| 01-Dec-2019 07:46:09 | Sending build context to Docker daemon 5.12kB |
| 01-Dec-2019 07:46:09 | |
| 01-Dec-2019 07:46:09 | Step 1/3 : ARG PYCLOWDER_PYTHON="" |
| 01-Dec-2019 07:46:09 | Step 2/3 : FROM clowder/extractors-simple-r-extractor${PYCLOWDER_PYTHON}:onbuild |
| 01-Dec-2019 07:46:09 | # Executing 5 build triggers |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> c7094a27ff8d |
| 01-Dec-2019 07:46:09 | Step 3/3 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> 3f1f7b7334de |
| 01-Dec-2019 07:46:09 | Successfully built 3f1f7b7334de |
| 01-Dec-2019 07:46:09 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
| 01-Dec-2019 07:46:09 | Sending build context to Docker daemon 8.192kB |
| 01-Dec-2019 07:46:09 | |
| 01-Dec-2019 07:46:09 | Step 1/7 : FROM python:3.5 |
| 01-Dec-2019 07:46:09 | ---> 5be81bc3f1e6 |
| 01-Dec-2019 07:46:09 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> 776d9bc25f0f |
| 01-Dec-2019 07:46:09 | Step 3/7 : EXPOSE 9999 |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> 3dd4e3666905 |
| 01-Dec-2019 07:46:09 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> 553785aaf315 |
| 01-Dec-2019 07:46:09 | Step 5/7 : WORKDIR /src |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> a12d43591beb |
| 01-Dec-2019 07:46:09 | Step 6/7 : COPY monitor.py /src/ |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> 9107ae1a6ce9 |
| 01-Dec-2019 07:46:09 | Step 7/7 : CMD python monitor.py |
| 01-Dec-2019 07:46:09 | ---> Using cache |
| 01-Dec-2019 07:46:09 | ---> f12ad9a235b0 |
| 01-Dec-2019 07:46:09 | Successfully built f12ad9a235b0 |
| 01-Dec-2019 07:46:09 | Successfully tagged clowder/extractors-monitor:latest |
| 01-Dec-2019 07:46:09 | Finished task 'docker push' with result: Success |
| 01-Dec-2019 07:46:09 | Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' |
| 01-Dec-2019 07:46:09 | Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC2105-JOB1... |
| 01-Dec-2019 07:46:09 | Finished task 'test results' with result: Success |
| 01-Dec-2019 07:46:09 | Running post build plugin 'Docker Container Cleanup' |
| 01-Dec-2019 07:46:09 | Running post build plugin 'NCover Results Collector' |
| 01-Dec-2019 07:46:09 | Running post build plugin 'Clover Results Collector' |
| 01-Dec-2019 07:46:09 | Running post build plugin 'npm Cache Cleanup' |
| 01-Dec-2019 07:46:09 | Running post build plugin 'Artifact Copier' |
| 01-Dec-2019 07:46:09 | Finalising the build... |
| 01-Dec-2019 07:46:09 | Stopping timer. |
| 01-Dec-2019 07:46:09 | Build CATS-PYC2105-JOB1-1 completed. |
| 01-Dec-2019 07:46:09 | Running on server: post build plugin 'NCover Results Collector' |
| 01-Dec-2019 07:46:09 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 01-Dec-2019 07:46:09 | Running on server: post build plugin 'Clover Delta Calculator' |
| 01-Dec-2019 07:46:09 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 01-Dec-2019 07:46:09 | All post build plugins have finished |
| 01-Dec-2019 07:46:09 | Generating build results summary... |
| 01-Dec-2019 07:46:09 | Saving build results to disk... |
| 01-Dec-2019 07:46:10 | Logging substituted variables... |
| 01-Dec-2019 07:46:10 | Indexing build results... |
| 01-Dec-2019 07:46:10 | Finished building CATS-PYC2105-JOB1-1. |