Build: #1 failed
Job: Default Job failed
Build log
The build generated 318 lines of output. Download or view full build log.
| 29-Sep-2019 15:30:36 | Build Clowder - pyclowder - hotfix-extractor-info.json - Default Job #1 (CATS-PYC25-JOB1-1) started building on agent buildserver-2.os.ncsa.edu |
| 29-Sep-2019 15:30:36 | Remote agent on host buildserver-2.os.ncsa.edu |
| 29-Sep-2019 15:30:36 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC25-JOB1 |
| 29-Sep-2019 15:30:36 | Executing build Clowder - pyclowder - hotfix-extractor-info.json - Default Job #1 (CATS-PYC25-JOB1-1) |
| 29-Sep-2019 15:30:36 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 29-Sep-2019 15:30:36 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC25-JOB1 |
| 29-Sep-2019 15:30:36 | Updating source code to revision: a0d31eb90c697074ff18114afd716d726970cd57 |
| 29-Sep-2019 15:30:36 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC25-JOB1/.git'. |
| 29-Sep-2019 15:30:36 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC25-JOB1/.git/ |
| 29-Sep-2019 15:30:36 | Fetching 'refs/heads/hotfix/extractor-info.json' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch. |
| 29-Sep-2019 15:30:36 | Warning: Permanently added '[127.0.0.1]:39245' (RSA) to the list of known hosts. |
| 29-Sep-2019 15:30:37 | From ssh://127.0.0.1:39245/cats/pyclowder |
| 29-Sep-2019 15:30:37 | * [new branch] hotfix/extractor-info.json -> hotfix/extractor-info.json |
| 29-Sep-2019 15:30:37 | Checking out revision a0d31eb90c697074ff18114afd716d726970cd57. |
| 29-Sep-2019 15:30:37 | Switched to branch 'hotfix/extractor-info.json' |
| 29-Sep-2019 15:30:37 | Updated source code to revision: a0d31eb90c697074ff18114afd716d726970cd57 |
| 29-Sep-2019 15:30:37 | Finished task 'Checkout Default Repository' with result: Success |
| 29-Sep-2019 15:30:37 | Running pre-build action: VCS Version Collector |
| 29-Sep-2019 15:30:37 | Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 29-Sep-2019 15:30:37 | Beginning to execute external process for build 'Clowder - pyclowder - hotfix-extractor-info.json - Default Job #1 (CATS-PYC25-JOB1-1)' ... running command line: /bin/sh docker.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC25-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=hotfix/extractor-info.json bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=hotfix/extractor-info.json bamboo_repository_revision_number=a0d31eb90c697074ff18114afd716d726970cd57 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC25-JOB1-1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC25-JOB1 bamboo_planRepository_1_name=pyclowder bamboo_buildKey=CATS-PYC25-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=pyclowder bamboo_planRepository_name=pyclowder bamboo_buildNumber=1 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC25-JOB1-1 bamboo_repository_177831941_git_branch=hotfix/extractor-info.json bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_repository_177831941_branch_name=hotfix/extractor-info.json bamboo_repository_177831941_revision_number=a0d31eb90c697074ff18114afd716d726970cd57 bamboo_agentId=140673028 bamboo_planName=Clowder - pyclowder - hotfix-extractor-info.json bamboo_shortPlanKey=PYC25 bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_repository_177831941_git_username= bamboo_planRepository_revision=a0d31eb90c697074ff18114afd716d726970cd57 bamboo_buildTimeStamp=2019-09-28T10:50:40.152-05:00 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_repository_git_branch=hotfix/extractor-info.json bamboo_buildResultKey=CATS-PYC25-JOB1-1 bamboo_repository_branch_name=hotfix/extractor-info.json bamboo_buildPlanName=Clowder - pyclowder - hotfix-extractor-info.json - Default Job bamboo_planRepository_1_revision=a0d31eb90c697074ff18114afd716d726970cd57 bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=pyclowder bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_repository_177831941_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_planRepository_branch=hotfix/extractor-info.json bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=hotfix/extractor-info.json bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=hotfix/extractor-info.json bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-177700869 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_repository_177831941_name=pyclowder bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC25-JOB1 bamboo_planKey=CATS-PYC25 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=hotfix/extractor-info.json |
| 29-Sep-2019 15:30:37 | Sending build context to Docker daemon 266.8kB |
| 29-Sep-2019 15:30:37 | |
| 29-Sep-2019 15:30:37 | Step 1/10 : FROM ubuntu:16.04 |
| 29-Sep-2019 15:30:37 | ---> 657d80a6401d |
| 29-Sep-2019 15:30:37 | Step 2/10 : ARG PYTHON_VERSION="2.7" |
| 29-Sep-2019 15:30:37 | ---> Using cache |
| 29-Sep-2019 15:30:37 | ---> 7d071fce2822 |
| 29-Sep-2019 15:30:37 | Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION} RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 29-Sep-2019 15:30:37 | ---> Using cache |
| 29-Sep-2019 15:30:37 | ---> 6d4fba816a1e |
| 29-Sep-2019 15:30:37 | Step 4/10 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py && python /tmp/get-pip.py && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py |
| 29-Sep-2019 15:30:37 | ---> Using cache |
| 29-Sep-2019 15:30:37 | ---> 120aa51655ff |
| 29-Sep-2019 15:30:37 | Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 29-Sep-2019 15:30:37 | ---> 870b6b727907 |
| 29-Sep-2019 15:30:37 | Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/ |
| 29-Sep-2019 15:30:38 | ---> be3d535e8434 |
| 29-Sep-2019 15:30:38 | Step 7/10 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 29-Sep-2019 15:30:38 | ---> Running in 651e1f8371b4 |
| 29-Sep-2019 15:30:41 | DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support |
| 29-Sep-2019 15:30:42 | Processing /tmp/pyclowder |
| 29-Sep-2019 15:30:42 | Collecting enum34==1.1.6 (from pyclowder==2.2.0) |
| 29-Sep-2019 15:30:42 | Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl |
| 29-Sep-2019 15:30:42 | Collecting pika==1.0.0 (from pyclowder==2.2.0) |
| 29-Sep-2019 15:30:42 | Downloading https://files.pythonhosted.org/packages/53/a4/5aff2293e1cdcf5f77447ebdfeaac99b622aef7d1e723cf9a5fe317b077c/pika-1.0.0-py2.py3-none-any.whl (148kB) |
| 29-Sep-2019 15:30:42 | Collecting PyYAML==5.1 (from pyclowder==2.2.0) |
| 29-Sep-2019 15:30:42 | Downloading https://files.pythonhosted.org/packages/9f/2c/9417b5c774792634834e730932745bc09a7d36754ca00acf1ccd1ac2594d/PyYAML-5.1.tar.gz (274kB) |
| 29-Sep-2019 15:30:42 | Collecting requests==2.21.0 (from pyclowder==2.2.0) |
| 29-Sep-2019 15:30:43 | Downloading https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl (57kB) |
| 29-Sep-2019 15:30:43 | Collecting certifi>=2017.4.17 (from requests==2.21.0->pyclowder==2.2.0) |
| 29-Sep-2019 15:30:43 | Downloading https://files.pythonhosted.org/packages/18/b0/8146a4f8dd402f60744fa380bc73ca47303cccf8b9190fd16a827281eac2/certifi-2019.9.11-py2.py3-none-any.whl (154kB) |
| 29-Sep-2019 15:30:43 | Collecting chardet<3.1.0,>=3.0.2 (from requests==2.21.0->pyclowder==2.2.0) |
| 29-Sep-2019 15:30:43 | Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) |
| 29-Sep-2019 15:30:43 | Collecting idna<2.9,>=2.5 (from requests==2.21.0->pyclowder==2.2.0) |
| 29-Sep-2019 15:30:43 | Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB) |
| 29-Sep-2019 15:30:43 | Collecting urllib3<1.25,>=1.21.1 (from requests==2.21.0->pyclowder==2.2.0) |
| 29-Sep-2019 15:30:43 | Downloading https://files.pythonhosted.org/packages/01/11/525b02e4acc0c747de8b6ccdab376331597c569c42ea66ab0a1dbd36eca2/urllib3-1.24.3-py2.py3-none-any.whl (118kB) |
| 29-Sep-2019 15:30:43 | Building wheels for collected packages: pyclowder, PyYAML |
| 29-Sep-2019 15:30:43 | Building wheel for pyclowder (setup.py): started |
| 29-Sep-2019 15:30:43 | Building wheel for pyclowder (setup.py): finished with status 'done' |
| 29-Sep-2019 15:30:43 | Created wheel for pyclowder: filename=pyclowder-2.2.0-cp27-none-any.whl size=31349 sha256=fd2729966872904f39a55ed8497e5cc3fb20a507f45e00dd6c14dd912f72c5d6 |
| 29-Sep-2019 15:30:43 | Stored in directory: /tmp/pip-ephem-wheel-cache-AmCes_/wheels/aa/74/36/92a180b9736e758626878aa42c37afe9bc77b688e080a6a1fe |
| 29-Sep-2019 15:30:43 | Building wheel for PyYAML (setup.py): started |
| 29-Sep-2019 15:30:43 | Building wheel for PyYAML (setup.py): finished with status 'done' |
| 29-Sep-2019 15:30:43 | Created wheel for PyYAML: filename=PyYAML-5.1-cp27-cp27mu-linux_x86_64.whl size=44881 sha256=25372bdfd00e93deb5f1eedcc4dad884831428a994e769e485a4cbd748eab138 |
| 29-Sep-2019 15:30:43 | Stored in directory: /root/.cache/pip/wheels/ad/56/bc/1522f864feb2a358ea6f1a92b4798d69ac783a28e80567a18b |
| 29-Sep-2019 15:30:43 | Successfully built pyclowder PyYAML |
| 29-Sep-2019 15:30:43 | Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder |
| 29-Sep-2019 15:30:44 | Successfully installed PyYAML-5.1 certifi-2019.9.11 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-2.2.0 requests-2.21.0 urllib3-1.24.3 |
| 29-Sep-2019 15:30:45 | Removing intermediate container 651e1f8371b4 |
| 29-Sep-2019 15:30:45 | ---> d4d64f262fe3 |
| 29-Sep-2019 15:30:45 | Step 8/10 : WORKDIR /home/clowder |
| 29-Sep-2019 15:30:45 | ---> Running in 09ebab18dfe3 |
| 29-Sep-2019 15:30:46 | Removing intermediate container 09ebab18dfe3 |
| 29-Sep-2019 15:30:46 | ---> 802f0fe911eb |
| 29-Sep-2019 15:30:46 | Step 9/10 : COPY notifications.json /home/clowder/ |
| 29-Sep-2019 15:30:46 | ---> 0cb79af204d2 |
| 29-Sep-2019 15:30:46 | Step 10/10 : CMD python "./${MAIN_SCRIPT}" |
| 29-Sep-2019 15:30:47 | ---> Running in a73be5fca046 |
| 29-Sep-2019 15:30:47 | Removing intermediate container a73be5fca046 |
| 29-Sep-2019 15:30:47 | ---> cae2dfca49c4 |
| 29-Sep-2019 15:30:47 | Successfully built cae2dfca49c4 |
| 29-Sep-2019 15:30:47 | Successfully tagged clowder/pyclowder:latest |
| 29-Sep-2019 15:30:47 | Sending build context to Docker daemon 264.7kB |
| 29-Sep-2019 15:30:47 | |
| 29-Sep-2019 15:30:47 | Step 1/7 : ARG PYCLOWDER_PYTHON="" |
| 29-Sep-2019 15:30:47 | Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
| 29-Sep-2019 15:30:47 | ---> cae2dfca49c4 |
| 29-Sep-2019 15:30:47 | Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:30:47 | ---> Running in 899ca467a333 |
| 29-Sep-2019 15:30:48 | Removing intermediate container 899ca467a333 |
| 29-Sep-2019 15:30:48 | ---> 864ed9310a99 |
| 29-Sep-2019 15:30:48 | Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-Sep-2019 15:30:48 | ---> Running in b99856e745e5 |
| 29-Sep-2019 15:30:48 | Removing intermediate container b99856e745e5 |
| 29-Sep-2019 15:30:48 | ---> ecfabdd25deb |
| 29-Sep-2019 15:30:48 | Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:30:49 | ---> Running in 9dfb8f10426d |
| 29-Sep-2019 15:30:49 | Removing intermediate container 9dfb8f10426d |
| 29-Sep-2019 15:30:49 | ---> e4b1f93549ef |
| 29-Sep-2019 15:30:49 | Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-Sep-2019 15:30:49 | ---> Running in f1f5ec00cc61 |
| 29-Sep-2019 15:30:49 | Removing intermediate container f1f5ec00cc61 |
| 29-Sep-2019 15:30:49 | ---> 7ed38af3c3fc |
| 29-Sep-2019 15:30:49 | Step 7/7 : ONBUILD ADD . /home/clowder/ |
| 29-Sep-2019 15:30:50 | ---> Running in 2e81a1498ad1 |
| 29-Sep-2019 15:30:50 | Removing intermediate container 2e81a1498ad1 |
| 29-Sep-2019 15:30:50 | ---> 723869ee102e |
| 29-Sep-2019 15:30:50 | Successfully built 723869ee102e |
| 29-Sep-2019 15:30:51 | Successfully tagged clowder/pyclowder:onbuild |
| 29-Sep-2019 15:30:51 | Sending build context to Docker daemon 12.8kB |
| 29-Sep-2019 15:30:51 | |
| 29-Sep-2019 15:30:51 | Step 1/6 : ARG PYCLOWDER_PYTHON="" |
| 29-Sep-2019 15:30:51 | Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild |
| 29-Sep-2019 15:30:51 | # Executing 5 build triggers |
| 29-Sep-2019 15:30:51 | ---> Running in ba268a6fae0a |
| 29-Sep-2019 15:30:53 | Removing intermediate container ba268a6fae0a |
| 29-Sep-2019 15:30:54 | ---> Running in 9f94439c87b8 |
| 29-Sep-2019 15:30:56 | Removing intermediate container 9f94439c87b8 |
| 29-Sep-2019 15:30:56 | ---> c578e40743a1 |
| 29-Sep-2019 15:30:56 | Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
| 29-Sep-2019 15:30:57 | ---> Running in 4327426c6c58 |
| 29-Sep-2019 15:30:57 | Removing intermediate container 4327426c6c58 |
| 29-Sep-2019 15:30:57 | ---> a7adc7282619 |
| 29-Sep-2019 15:30:57 | Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:30:57 | ---> Running in 15bb3abe2ac2 |
| 29-Sep-2019 15:30:57 | Removing intermediate container 15bb3abe2ac2 |
| 29-Sep-2019 15:30:57 | ---> e85bac8f4d8d |
| 29-Sep-2019 15:30:57 | Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-Sep-2019 15:30:58 | ---> Running in 09ab50fd9840 |
| 29-Sep-2019 15:30:58 | Removing intermediate container 09ab50fd9840 |
| 29-Sep-2019 15:30:58 | ---> ac280d4075db |
| 29-Sep-2019 15:30:58 | Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/ |
| 29-Sep-2019 15:30:58 | ---> Running in ef706dc63e6e |
| 29-Sep-2019 15:30:59 | Removing intermediate container ef706dc63e6e |
| 29-Sep-2019 15:30:59 | ---> abb3c499a93f |
| 29-Sep-2019 15:30:59 | Successfully built abb3c499a93f |
| 29-Sep-2019 15:30:59 | Successfully tagged clowder/extractors-binary-preview:onbuild |
| 29-Sep-2019 15:30:59 | Sending build context to Docker daemon 6.656kB |
| 29-Sep-2019 15:30:59 | |
| 29-Sep-2019 15:30:59 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
| 29-Sep-2019 15:30:59 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
| 29-Sep-2019 15:30:59 | ---> cae2dfca49c4 |
| 29-Sep-2019 15:30:59 | Step 3/11 : ENV EXTRACTION_FUNC="" |
| 29-Sep-2019 15:30:59 | ---> Running in f36267e5a305 |
| 29-Sep-2019 15:31:00 | Removing intermediate container f36267e5a305 |
| 29-Sep-2019 15:31:00 | ---> 7c92184e5789 |
| 29-Sep-2019 15:31:00 | Step 4/11 : ENV EXTRACTION_MODULE="" |
| 29-Sep-2019 15:31:00 | ---> Running in d83f599608e3 |
| 29-Sep-2019 15:31:00 | Removing intermediate container d83f599608e3 |
| 29-Sep-2019 15:31:00 | ---> d25e6249ec32 |
| 29-Sep-2019 15:31:00 | Step 5/11 : COPY simple_extractor.py . |
| 29-Sep-2019 15:31:01 | ---> 6eaa137102ff |
| 29-Sep-2019 15:31:01 | Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:31:01 | ---> Running in 5dd65c9bc3d7 |
| 29-Sep-2019 15:31:01 | Removing intermediate container 5dd65c9bc3d7 |
| 29-Sep-2019 15:31:01 | ---> cdfdaab1f2eb |
| 29-Sep-2019 15:31:01 | Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-Sep-2019 15:31:02 | ---> Running in b8d97062678d |
| 29-Sep-2019 15:31:02 | Removing intermediate container b8d97062678d |
| 29-Sep-2019 15:31:02 | ---> 7938512b8d0c |
| 29-Sep-2019 15:31:02 | Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:31:02 | ---> Running in 994d1a98fe0c |
| 29-Sep-2019 15:31:03 | Removing intermediate container 994d1a98fe0c |
| 29-Sep-2019 15:31:03 | ---> 32cef46fde19 |
| 29-Sep-2019 15:31:03 | Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-Sep-2019 15:31:03 | ---> Running in 256742289e1a |
| 29-Sep-2019 15:31:03 | Removing intermediate container 256742289e1a |
| 29-Sep-2019 15:31:03 | ---> 14894c7bc7b1 |
| 29-Sep-2019 15:31:03 | Step 10/11 : ONBUILD ADD . /home/clowder/ |
| 29-Sep-2019 15:31:03 | ---> Running in 536bd0490891 |
| 29-Sep-2019 15:31:04 | Removing intermediate container 536bd0490891 |
| 29-Sep-2019 15:31:04 | ---> 1d13e4d412d0 |
| 29-Sep-2019 15:31:04 | Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 29-Sep-2019 15:31:04 | ---> Running in 56bc2ff71eb9 |
| 29-Sep-2019 15:31:04 | Removing intermediate container 56bc2ff71eb9 |
| 29-Sep-2019 15:31:04 | ---> a176dc8a1e64 |
| 29-Sep-2019 15:31:04 | Successfully built a176dc8a1e64 |
| 29-Sep-2019 15:31:04 | Successfully tagged clowder/extractors-simple-extractor:onbuild |
| 29-Sep-2019 15:31:04 | Sending build context to Docker daemon 13.31kB |
| 29-Sep-2019 15:31:04 | |
| 29-Sep-2019 15:31:04 | Step 1/11 : ARG PYCLOWDER_PYTHON="" |
| 29-Sep-2019 15:31:04 | Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest |
| 29-Sep-2019 15:31:04 | ---> cae2dfca49c4 |
| 29-Sep-2019 15:31:04 | Step 3/11 : ENV R_SCRIPT="" R_FUNCTION="" |
| 29-Sep-2019 15:31:05 | ---> Running in 8715b630955f |
| 29-Sep-2019 15:31:05 | Removing intermediate container 8715b630955f |
| 29-Sep-2019 15:31:05 | ---> 50a5d8dcb18d |
| 29-Sep-2019 15:31:05 | Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 29-Sep-2019 15:31:05 | ---> Running in 39724629a837 |
| 29-Sep-2019 15:31:07 | Executing: /tmp/tmp.a4MmFesFNS/gpg.1.sh --keyserver |
| 29-Sep-2019 15:31:07 | keyserver.ubuntu.com |
| 29-Sep-2019 15:31:07 | --recv |
| 29-Sep-2019 15:31:07 | E084DAB9 |
| 29-Sep-2019 15:31:07 | gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com |
| 29-Sep-2019 15:31:07 | gpg: key E084DAB9: public key "Totally Legit Signing Key <mallory@example.org>" imported |
| 29-Sep-2019 15:31:07 | gpg: Total number processed: 1 |
| 29-Sep-2019 15:31:07 | gpg: imported: 1 (RSA: 1) |
| 29-Sep-2019 15:31:15 | W: GPG error: http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9 |
| 29-Sep-2019 15:31:15 | W: The repository 'http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease' is not signed. |
| 29-Sep-2019 15:31:16 | Reading package lists... |
| 29-Sep-2019 15:31:16 | Building dependency tree... |
| 29-Sep-2019 15:31:16 | Reading state information... |
| 29-Sep-2019 15:31:16 | The following additional packages will be installed: |
| 29-Sep-2019 15:31:16 | autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 |
| 29-Sep-2019 15:31:16 | ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism |
| 29-Sep-2019 15:31:16 | dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core |
| 29-Sep-2019 15:31:16 | g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base |
| 29-Sep-2019 15:31:16 | icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 |
| 29-Sep-2019 15:31:16 | libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev |
| 29-Sep-2019 15:31:16 | libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 |
| 29-Sep-2019 15:31:16 | libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl |
| 29-Sep-2019 15:31:16 | libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev |
| 29-Sep-2019 15:31:16 | libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 |
| 29-Sep-2019 15:31:16 | libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl |
| 29-Sep-2019 15:31:16 | libhttp-cookies-perl libhttp-date-perl libhttp-message-perl |
| 29-Sep-2019 15:31:16 | libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl |
| 29-Sep-2019 15:31:16 | libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 |
| 29-Sep-2019 15:31:16 | libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 |
| 29-Sep-2019 15:31:16 | liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 |
| 29-Sep-2019 15:31:16 | libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl |
| 29-Sep-2019 15:31:16 | libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils |
| 29-Sep-2019 15:31:16 | libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 |
| 29-Sep-2019 15:31:16 | libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib |
| 29-Sep-2019 15:31:16 | libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6 |
| 29-Sep-2019 15:31:16 | libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl |
| 29-Sep-2019 15:31:16 | libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl |
| 29-Sep-2019 15:31:16 | libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 |
| 29-Sep-2019 15:31:16 | libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 |
| 29-Sep-2019 15:31:16 | libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 |
| 29-Sep-2019 15:31:16 | linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 |
| 29-Sep-2019 15:31:16 | pkg-config po-debconf python python-minimal python-pkg-resources |
| 29-Sep-2019 15:31:16 | python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils |
| 29-Sep-2019 15:31:16 | zip zlib1g-dev |
| 29-Sep-2019 15:31:16 | Suggested packages: |
| 29-Sep-2019 15:31:16 | autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican |
| 29-Sep-2019 15:31:16 | | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make |
| 29-Sep-2019 15:31:16 | debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg |
| 29-Sep-2019 15:31:16 | gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg |
| 29-Sep-2019 15:31:16 | libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg |
| 29-Sep-2019 15:31:16 | libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg |
| 29-Sep-2019 15:31:16 | gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib |
| 29-Sep-2019 15:31:16 | gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc |
| 29-Sep-2019 15:31:16 | glibc-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc |
| 29-Sep-2019 15:31:16 | ncurses-doc readline-doc libstdc++-5-doc tcl8.6 tk8.6 libauthen-ntlm-perl |
| 29-Sep-2019 15:31:16 | make-doc less www-browser ed diffutils-doc perl-doc |
| 29-Sep-2019 15:31:16 | libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-box-perl |
| 29-Sep-2019 15:31:16 | python-doc python-tk python-setuptools python-rsvg python-cairo ess |
| 29-Sep-2019 15:31:16 | r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base |
| 29-Sep-2019 15:31:16 | texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra |
| 29-Sep-2019 15:31:16 | texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo |
| 29-Sep-2019 15:31:16 | gvfs-bin |
| 29-Sep-2019 15:31:16 | Recommended packages: |
| 29-Sep-2019 15:31:16 | fakeroot libalgorithm-merge-perl libasprintf-dev libgettextpo-dev bzip2-doc |
| 29-Sep-2019 15:31:16 | manpages manpages-dev libfile-fcntllock-perl libglib2.0-data |
| 29-Sep-2019 15:31:16 | shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl |
| 29-Sep-2019 15:31:16 | libhttp-daemon-perl libmailtools-perl xml-core ifupdown rename |
| 29-Sep-2019 15:31:16 | libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl |
| 29-Sep-2019 15:31:16 | libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils |
| 29-Sep-2019 15:31:16 | The following NEW packages will be installed: |
| 29-Sep-2019 15:31:16 | autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 |
| 29-Sep-2019 15:31:16 | ca-certificates cdbs cpp cpp-5 debhelper dh-strip-nondeterminism |
| 29-Sep-2019 15:31:16 | dh-translations dpkg-dev file fontconfig fontconfig-config fonts-dejavu-core |
| 29-Sep-2019 15:31:16 | g++ g++-5 gcc gcc-5 gettext gettext-base gfortran gfortran-5 groff-base |
| 29-Sep-2019 15:31:16 | icu-devtools intltool intltool-debian libarchive-zip-perl libasan2 |
| 29-Sep-2019 15:31:16 | libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev |
| 29-Sep-2019 15:31:16 | libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 |
| 29-Sep-2019 15:31:16 | libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl |
| 29-Sep-2019 15:31:16 | libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev |
| 29-Sep-2019 15:31:16 | libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgomp1 libgraphite2-3 |
| 29-Sep-2019 15:31:16 | libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl |
| 29-Sep-2019 15:31:16 | libhttp-cookies-perl libhttp-date-perl libhttp-message-perl |
| 29-Sep-2019 15:31:16 | libhttp-negotiate-perl libice6 libicu-dev libicu55 libio-html-perl |
| 29-Sep-2019 15:31:16 | libio-socket-ssl-perl libisl15 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 |
| 29-Sep-2019 15:31:16 | libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblsan0 |
| 29-Sep-2019 15:31:16 | liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 |
| 29-Sep-2019 15:31:16 | libmpc3 libmpfr4 libmpx0 libncurses5-dev libnet-http-perl libnet-ssleay-perl |
| 29-Sep-2019 15:31:16 | libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils |
| 29-Sep-2019 15:31:16 | libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 |
| 29-Sep-2019 15:31:16 | libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpython-stdlib |
| 29-Sep-2019 15:31:16 | libquadmath0 libreadline-dev libreadline6-dev libsigsegv2 libsm6 |
| 29-Sep-2019 15:31:16 | libstdc++-5-dev libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl |
| 29-Sep-2019 15:31:16 | libtinfo-dev libtk8.6 libtsan0 libubsan0 libunistring0 liburi-perl |
| 29-Sep-2019 15:31:16 | libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 |
| 29-Sep-2019 15:31:16 | libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 |
| 29-Sep-2019 15:31:16 | libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 |
| 29-Sep-2019 15:31:16 | linux-libc-dev m4 make man-db netbase openssl patch perl perl-modules-5.22 |
| 29-Sep-2019 15:31:16 | pkg-config po-debconf python python-minimal python-pkg-resources |
| 29-Sep-2019 15:31:16 | python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common |
| 29-Sep-2019 15:31:16 | xauth xdg-utils xz-utils zip zlib1g-dev |
| 29-Sep-2019 15:31:17 | 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. |
| 29-Sep-2019 15:31:17 | Need to get 114 MB of archives. |
| 29-Sep-2019 15:31:17 | After this operation, 409 MB of additional disk space will be used. |
| 29-Sep-2019 15:31:17 | WARNING: The following packages cannot be authenticated! |
| 29-Sep-2019 15:31:17 | r-base-core r-base-dev |
| 29-Sep-2019 15:31:17 | E: There were unauthenticated packages and -y was used without --allow-unauthenticated |
| 29-Sep-2019 15:31:17 | The command '/bin/sh -c echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"' returned a non-zero code: 100 |
| 29-Sep-2019 15:31:17 | |
| 29-Sep-2019 15:31:17 | Failing task since return code of [/bin/sh docker.sh] was 100 while expected 0 |
| 29-Sep-2019 15:31:17 | Finished task 'docker build and push' with result: Failed |
| 29-Sep-2019 15:31:17 | Running post build plugin 'Docker Container Cleanup' |
| 29-Sep-2019 15:31:17 | Running post build plugin 'NCover Results Collector' |
| 29-Sep-2019 15:31:17 | Running post build plugin 'Clover Results Collector' |
| 29-Sep-2019 15:31:17 | Running post build plugin 'npm Cache Cleanup' |
| 29-Sep-2019 15:31:17 | Running post build plugin 'Artifact Copier' |
| 29-Sep-2019 15:31:17 | Finalising the build... |
| 29-Sep-2019 15:31:17 | Stopping timer. |
| 29-Sep-2019 15:31:17 | Build CATS-PYC25-JOB1-1 completed. |
| 29-Sep-2019 15:31:17 | Running on server: post build plugin 'NCover Results Collector' |
| 29-Sep-2019 15:31:17 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 29-Sep-2019 15:31:17 | Running on server: post build plugin 'Clover Delta Calculator' |
| 29-Sep-2019 15:31:17 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 29-Sep-2019 15:31:17 | All post build plugins have finished |
| 29-Sep-2019 15:31:17 | Generating build results summary... |
| 29-Sep-2019 15:31:17 | Saving build results to disk... |
| 29-Sep-2019 15:31:17 | Logging substituted variables... |
| 29-Sep-2019 15:31:17 | Indexing build results... |
| 29-Sep-2019 15:31:17 | Finished building CATS-PYC25-JOB1-1. |