Build #19

Plan branch:
Next Generation of pyClowder

Build: #19 failed

Job: Default Job failed

Stages & jobs

  1. Default Stage

Build log

The build generated 211 lines of output. Download or view full build log.

08-Jun-2017 13:50:01 Build Clowder - pyclowder2 - geostreams - Default Job #19 (CATS-PYC26-JOB1-19) started building on agent buildserver-3.os.ncsa.edu
08-Jun-2017 13:50:01 Remote agent on host buildserver-3.os.ncsa.edu
08-Jun-2017 13:50:01 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1
08-Jun-2017 13:50:01 Executing build Clowder - pyclowder2 - geostreams - Default Job #19 (CATS-PYC26-JOB1-19)
08-Jun-2017 13:50:01 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
08-Jun-2017 13:50:01 Updating source code to revision: a6a2ae7accf3d8d1c4147d294879aaaf5e99c29b
08-Jun-2017 13:50:01 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/.git'.
08-Jun-2017 13:50:01 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/.git/
08-Jun-2017 13:50:01 Fetching 'refs/heads/geostreams' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch.
08-Jun-2017 13:50:01 Warning: Permanently added '[127.0.0.1]:44338' (RSA) to the list of known hosts.
08-Jun-2017 13:50:01 From ssh://127.0.0.1:44338/cats/pyclowder2
08-Jun-2017 13:50:01 * [new branch]      geostreams -> geostreams
08-Jun-2017 13:50:01 Checking out revision a6a2ae7accf3d8d1c4147d294879aaaf5e99c29b.
08-Jun-2017 13:50:01 Switched to branch 'geostreams'
08-Jun-2017 13:50:01 Updated source code to revision: a6a2ae7accf3d8d1c4147d294879aaaf5e99c29b
08-Jun-2017 13:50:01 Finished task 'Checkout Default Repository' with result: Success
08-Jun-2017 13:50:01 Running pre-build action: VCS Version Collector
08-Jun-2017 13:50:01 Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
08-Jun-2017 13:50:01
Beginning to execute external process for build 'Clowder - pyclowder2 - geostreams - Default Job #19 (CATS-PYC26-JOB1-19)'
... running command line:
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08-Jun-2017 13:50:02 New python executable in /tmp/virtualenv/pyclowder2/bin/python2
08-Jun-2017 13:50:02 Also creating executable in /tmp/virtualenv/pyclowder2/bin/python
08-Jun-2017 13:50:05 Installing setuptools, pkg_resources, pip, wheel...done.
08-Jun-2017 13:50:05 Running virtualenv with interpreter /usr/bin/python2
08-Jun-2017 13:50:05 Collecting enum34==1.1.6 (from -r requirements.txt (line 1))
08-Jun-2017 13:50:05   Using cached enum34-1.1.6-py2-none-any.whl
08-Jun-2017 13:50:05 Collecting et-xmlfile==1.0.1 (from -r requirements.txt (line 2))
08-Jun-2017 13:50:05 Collecting jdcal==1.3 (from -r requirements.txt (line 3))
08-Jun-2017 13:50:05 Collecting openpyxl==2.4.1 (from -r requirements.txt (line 4))
08-Jun-2017 13:50:06 Collecting pika==0.10.0 (from -r requirements.txt (line 5))
08-Jun-2017 13:50:06   Using cached pika-0.10.0-py2.py3-none-any.whl
08-Jun-2017 13:50:06 Collecting python-dateutil==2.6.0 (from -r requirements.txt (line 6))
08-Jun-2017 13:50:06   Using cached python_dateutil-2.6.0-py2.py3-none-any.whl
08-Jun-2017 13:50:06 Collecting pytz==2016.10 (from -r requirements.txt (line 7))
08-Jun-2017 13:50:06   Using cached pytz-2016.10-py2.py3-none-any.whl
08-Jun-2017 13:50:06 Collecting PyYAML==3.11 (from -r requirements.txt (line 8))
08-Jun-2017 13:50:06 Collecting requests==2.10.0 (from -r requirements.txt (line 9))
08-Jun-2017 13:50:06   Using cached requests-2.10.0-py2.py3-none-any.whl
08-Jun-2017 13:50:07 Collecting six==1.10.0 (from -r requirements.txt (line 10))
08-Jun-2017 13:50:07   Using cached six-1.10.0-py2.py3-none-any.whl
08-Jun-2017 13:50:07 Collecting wheel==0.24.0 (from -r requirements.txt (line 11))
08-Jun-2017 13:50:07   Using cached wheel-0.24.0-py2.py3-none-any.whl
08-Jun-2017 13:50:07 Collecting pytest==3.0.3 (from -r requirements.txt (line 12))
08-Jun-2017 13:50:07   Using cached pytest-3.0.3-py2.py3-none-any.whl
08-Jun-2017 13:50:07 Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 13))
08-Jun-2017 13:50:07 Collecting urllib3==1.14 (from -r requirements.txt (line 14))
08-Jun-2017 13:50:07   Using cached urllib3-1.14-py2.py3-none-any.whl
08-Jun-2017 13:50:07 Collecting py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 12))
08-Jun-2017 13:50:07   Using cached py-1.4.34-py2.py3-none-any.whl
08-Jun-2017 13:50:07 Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 13))
08-Jun-2017 13:50:07   Using cached pep8-1.7.0-py2.py3-none-any.whl
08-Jun-2017 13:50:07 Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 13))
08-Jun-2017 13:50:07 Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 13))
08-Jun-2017 13:50:07   Using cached execnet-1.4.1-py2.py3-none-any.whl
08-Jun-2017 13:50:07 Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 13))
08-Jun-2017 13:50:07   Using cached apipkg-1.4-py2.py3-none-any.whl
08-Jun-2017 13:50:07 Installing collected packages: enum34, et-xmlfile, jdcal, openpyxl, pika, six, python-dateutil, pytz, PyYAML, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8, urllib3
08-Jun-2017 13:50:08   Found existing installation: wheel 0.30.0a0
08-Jun-2017 13:50:08     Uninstalling wheel-0.30.0a0:
08-Jun-2017 13:50:08       Successfully uninstalled wheel-0.30.0a0
08-Jun-2017 13:50:09 Successfully installed PyYAML-3.11 apipkg-1.4 enum34-1.1.6 et-xmlfile-1.0.1 execnet-1.4.1 jdcal-1.3 openpyxl-2.4.1 pep8-1.7.0 pika-0.10.0 py-1.4.34 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 python-dateutil-2.6.0 pytz-2016.10 requests-2.10.0 six-1.10.0 urllib3-1.14 wheel-0.24.0
08-Jun-2017 13:50:09 ============================= test session starts ==============================
08-Jun-2017 13:50:09 platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.4.34, pluggy-0.4.0
08-Jun-2017 13:50:09 rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1, inifile: setup.cfg
08-Jun-2017 13:50:09 plugins: pep8-1.0.6
08-Jun-2017 13:50:09 collected 35 items
08-Jun-2017 13:50:09
08-Jun-2017 13:50:09 setup.py .
08-Jun-2017 13:50:09 docs/source/conf.py F
08-Jun-2017 13:50:09 pyclowder/__init__.py .
08-Jun-2017 13:50:09 pyclowder/client.py F
08-Jun-2017 13:50:09 pyclowder/collections.py .
08-Jun-2017 13:50:09 pyclowder/connectors.py .
08-Jun-2017 13:50:09 pyclowder/datasets.py .
08-Jun-2017 13:50:09 pyclowder/extractors.py .
08-Jun-2017 13:50:09 pyclowder/files.py .
08-Jun-2017 13:50:09 pyclowder/geostreams.py .
08-Jun-2017 13:50:09 pyclowder/sections.py .
08-Jun-2017 13:50:09 pyclowder/utils.py .
08-Jun-2017 13:50:09 pyclowder/geostreams/__init__.py .
08-Jun-2017 13:50:09 pyclowder/geostreams/cache.py .
08-Jun-2017 13:50:09 pyclowder/geostreams/csv.py .
08-Jun-2017 13:50:09 pyclowder/geostreams/datapoints.py .
08-Jun-2017 13:50:09 pyclowder/geostreams/datasets.py .
08-Jun-2017 13:50:10 pyclowder/geostreams/map_names.py .
08-Jun-2017 13:50:10 pyclowder/geostreams/sensors.py .
08-Jun-2017 13:50:10 pyclowder/geostreams/streams.py .
08-Jun-2017 13:50:10 pyclowder/geostreams/time_transformers.py .
08-Jun-2017 13:50:10 sample-extractors/echo/echo.py .
08-Jun-2017 13:50:10 sample-extractors/wordcount/wordcount.py .
08-Jun-2017 13:50:10 tests/__init__.py .
08-Jun-2017 13:50:10 tests/conftest.py F
08-Jun-2017 13:50:10 tests/test_datapoints.py FE
08-Jun-2017 13:50:10 tests/test_geostreams.py .EEE
08-Jun-2017 13:50:10 tests/test_sensors.py .EEE
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/test-reports/results.xml
08-Jun-2017 13:50:10 ==================================== ERRORS ====================================
08-Jun-2017 13:50:10 ____________ ERROR at setup of test_datapoints_count_by_sensor_get _____________
08-Jun-2017 13:50:10 file /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_datapoints.py, line 5
08-Jun-2017 13:50:10   def test_datapoints_count_by_sensor_get(caplog, host, key):
08-Jun-2017 13:50:10 E       fixture 'caplog' not found
08-Jun-2017 13:50:10 >       available fixtures: cache, capfd, capsys, doctest_namespace, host, key, monkeypatch, password, pytestconfig, record_xml_property, recwarn, tmpdir, tmpdir_factory, username
08-Jun-2017 13:50:10 >       use 'pytest --fixtures [testpath]' for help on them.
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_datapoints.py:5
08-Jun-2017 13:50:10 ________________________ ERROR at setup of test_version ________________________
08-Jun-2017 13:50:10 file /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_geostreams.py, line 7
08-Jun-2017 13:50:10   def test_version(caplog, host, key):
08-Jun-2017 13:50:10 E       fixture 'caplog' not found
08-Jun-2017 13:50:10 >       available fixtures: cache, capfd, capsys, doctest_namespace, host, key, monkeypatch, password, pytestconfig, record_xml_property, recwarn, tmpdir, tmpdir_factory, username
08-Jun-2017 13:50:10 >       use 'pytest --fixtures [testpath]' for help on them.
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_geostreams.py:7
08-Jun-2017 13:50:10 ______________________ ERROR at setup of test_get_sensors ______________________
08-Jun-2017 13:50:10 file /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_geostreams.py, line 15
08-Jun-2017 13:50:10   def test_get_sensors(caplog, host, key):
08-Jun-2017 13:50:10 E       fixture 'caplog' not found
08-Jun-2017 13:50:10 >       available fixtures: cache, capfd, capsys, doctest_namespace, host, key, monkeypatch, password, pytestconfig, record_xml_property, recwarn, tmpdir, tmpdir_factory, username
08-Jun-2017 13:50:10 >       use 'pytest --fixtures [testpath]' for help on them.
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_geostreams.py:15
08-Jun-2017 13:50:10 ___________________ ERROR at setup of test_raise_for_status ____________________
08-Jun-2017 13:50:10 file /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_geostreams.py, line 24
08-Jun-2017 13:50:10   def test_raise_for_status(caplog, host, key):
08-Jun-2017 13:50:10 E       fixture 'caplog' not found
08-Jun-2017 13:50:10 >       available fixtures: cache, capfd, capsys, doctest_namespace, host, key, monkeypatch, password, pytestconfig, record_xml_property, recwarn, tmpdir, tmpdir_factory, username
08-Jun-2017 13:50:10 >       use 'pytest --fixtures [testpath]' for help on them.
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_geostreams.py:24
08-Jun-2017 13:50:10 _____________________ ERROR at setup of test_sensors_post ______________________
08-Jun-2017 13:50:10 file /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_sensors.py, line 7
08-Jun-2017 13:50:10   def test_sensors_post(caplog, host, key):
08-Jun-2017 13:50:10 E       fixture 'caplog' not found
08-Jun-2017 13:50:10 >       available fixtures: cache, capfd, capsys, doctest_namespace, host, key, monkeypatch, password, pytestconfig, record_xml_property, recwarn, tmpdir, tmpdir_factory, username
08-Jun-2017 13:50:10 >       use 'pytest --fixtures [testpath]' for help on them.
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_sensors.py:7
08-Jun-2017 13:50:10 ______________________ ERROR at setup of test_sensors_get ______________________
08-Jun-2017 13:50:10 file /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_sensors.py, line 19
08-Jun-2017 13:50:10   def test_sensors_get(caplog, host, key):
08-Jun-2017 13:50:10 E       fixture 'caplog' not found
08-Jun-2017 13:50:10 >       available fixtures: cache, capfd, capsys, doctest_namespace, host, key, monkeypatch, password, pytestconfig, record_xml_property, recwarn, tmpdir, tmpdir_factory, username
08-Jun-2017 13:50:10 >       use 'pytest --fixtures [testpath]' for help on them.
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_sensors.py:19
08-Jun-2017 13:50:10 ____________________ ERROR at setup of test_sensors_delete _____________________
08-Jun-2017 13:50:10 file /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_sensors.py, line 29
08-Jun-2017 13:50:10   def test_sensors_delete(caplog, host, key):
08-Jun-2017 13:50:10 E       fixture 'caplog' not found
08-Jun-2017 13:50:10 >       available fixtures: cache, capfd, capsys, doctest_namespace, host, key, monkeypatch, password, pytestconfig, record_xml_property, recwarn, tmpdir, tmpdir_factory, username
08-Jun-2017 13:50:10 >       use 'pytest --fixtures [testpath]' for help on them.
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_sensors.py:29
08-Jun-2017 13:50:10 =================================== FAILURES ===================================
08-Jun-2017 13:50:10 __________________________________ PEP8-check __________________________________
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/docs/source/conf.py:34:5: E128 continuation line under-indented for visual indent
08-Jun-2017 13:50:10     'sphinx.ext.doctest',
08-Jun-2017 13:50:10     ^
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/docs/source/conf.py:35:5: E128 continuation line under-indented for visual indent
08-Jun-2017 13:50:10     'sphinx.ext.viewcode',
08-Jun-2017 13:50:10     ^
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/docs/source/conf.py:36:5: E128 continuation line under-indented for visual indent
08-Jun-2017 13:50:10     'sphinx.ext.githubpages']
08-Jun-2017 13:50:10     ^
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/docs/source/conf.py:159:1: W391 blank line at end of file
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 ^
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 __________________________________ PEP8-check __________________________________
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/pyclowder/client.py:145:121: E501 line too long (137 > 120 characters)
08-Jun-2017 13:50:10             return requests.post(url, params=params, data=json.dumps(content), headers=self.headers, auth=(self.username, self.password))
08-Jun-2017 13:50:10                                                                                                                         ^
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/pyclowder/client.py:163:121: E501 line too long (127 > 120 characters)
08-Jun-2017 13:50:10             return requests.post(url, params=params, files={"File": open(filename, 'rb')}, auth=(self.username, self.password))
08-Jun-2017 13:50:10                                                                                                                         ^
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 __________________________________ PEP8-check __________________________________
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/conftest.py:14:1: E302 expected 2 blank lines, found 1
08-Jun-2017 13:50:10 @pytest.fixture(scope="module")
08-Jun-2017 13:50:10 ^
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 __________________________________ PEP8-check __________________________________
08-Jun-2017 13:50:10 /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1/tests/test_datapoints.py:11:39: W292 no newline at end of file
08-Jun-2017 13:50:10     assert response.status_code != 200
08-Jun-2017 13:50:10                                       ^
08-Jun-2017 13:50:10
08-Jun-2017 13:50:10 ================= 4 failed, 24 passed, 7 error in 0.47 seconds =================
08-Jun-2017 13:50:10 Failing task since return code of [/home/bamboo/bamboo-agent-home/temp/CATS-PYC26-JOB1-19-ScriptBuildTask-485003446175769850.sh] was 1 while expected 0
08-Jun-2017 13:50:10 Finished task 'pytest' with result: Failed
08-Jun-2017 13:50:10 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
08-Jun-2017 13:50:10 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC26-JOB1...
08-Jun-2017 13:50:10 Failing task since 11 failing test cases were found.
08-Jun-2017 13:50:10 Finished task 'test results' with result: Failed
08-Jun-2017 13:50:10 Running post build plugin 'Docker Container Cleanup'
08-Jun-2017 13:50:10 Running post build plugin 'NCover Results Collector'
08-Jun-2017 13:50:10 Running post build plugin 'Clover Results Collector'
08-Jun-2017 13:50:10 Running post build plugin 'npm Cache Cleanup'
08-Jun-2017 13:50:10 Running post build plugin 'Artifact Copier'
08-Jun-2017 13:50:10 Finalising the build...
08-Jun-2017 13:50:10 Stopping timer.
08-Jun-2017 13:50:10 Build CATS-PYC26-JOB1-19 completed.
08-Jun-2017 13:50:10 Running on server: post build plugin 'NCover Results Collector'
08-Jun-2017 13:50:10 Running on server: post build plugin 'Build Hanging Detection Configuration'
08-Jun-2017 13:50:10 Running on server: post build plugin 'Clover Delta Calculator'
08-Jun-2017 13:50:10 Running on server: post build plugin 'Maven Dependencies Postprocessor'
08-Jun-2017 13:50:10 All post build plugins have finished
08-Jun-2017 13:50:10 Generating build results summary...
08-Jun-2017 13:50:10 Saving build results to disk...
08-Jun-2017 13:50:10 Logging substituted variables...
08-Jun-2017 13:50:10 Indexing build results...
08-Jun-2017 13:50:10 Finished building CATS-PYC26-JOB1-19.