Build #22

Plan branch:
Next Generation of pyClowder

Build: #22 was successful

Job: Default Job was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 2,636 lines of output.   The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.

29-Mar-2019 13:59:20 ---> Running in 2eeef20dbe68
29-Mar-2019 13:59:20 Removing intermediate container 2eeef20dbe68
29-Mar-2019 13:59:20 ---> 406d02b8cdfa
29-Mar-2019 13:59:20 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 13:59:21 ---> Running in 299a5f5494e5
29-Mar-2019 13:59:21 Removing intermediate container 299a5f5494e5
29-Mar-2019 13:59:21 ---> 2217fa553eeb
29-Mar-2019 13:59:21 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
29-Mar-2019 13:59:21 ---> Running in a51776df4171
29-Mar-2019 13:59:22 Removing intermediate container a51776df4171
29-Mar-2019 13:59:22 ---> b00b468b57ec
29-Mar-2019 13:59:22 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
29-Mar-2019 13:59:22 ---> Running in 0cb92ce5db07
29-Mar-2019 13:59:23 Removing intermediate container 0cb92ce5db07
29-Mar-2019 13:59:23 ---> 707c1ece44ab
29-Mar-2019 13:59:23 Step 9/10 : ONBUILD ADD . /home/clowder/
29-Mar-2019 13:59:24 ---> Running in 16549b1dc966
29-Mar-2019 13:59:24 Removing intermediate container 16549b1dc966
29-Mar-2019 13:59:24 ---> a499cea23229
29-Mar-2019 13:59:24 Step 10/10 : CMD python r_extractor.py
29-Mar-2019 13:59:25 ---> Running in 806dd9df4862
29-Mar-2019 13:59:25 Removing intermediate container 806dd9df4862
29-Mar-2019 13:59:25 ---> e2352836989d
29-Mar-2019 13:59:25 Successfully built e2352836989d
29-Mar-2019 13:59:25 Successfully tagged clowder/extractors-simple-r-extractor:onbuild
29-Mar-2019 13:59:25 Sending build context to Docker daemon  268.8kB
29-Mar-2019 13:59:25
29-Mar-2019 13:59:25 Step 1/9 : FROM ubuntu:16.04
29-Mar-2019 13:59:25 ---> 9361ce633ff1
29-Mar-2019 13:59:25 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
29-Mar-2019 13:59:25 ---> Using cache
29-Mar-2019 13:59:25 ---> e316328c72be
29-Mar-2019 13:59:25 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends         python         python-pip     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/*
29-Mar-2019 13:59:25 ---> Using cache
29-Mar-2019 13:59:25 ---> c325ed925488
29-Mar-2019 13:59:25 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder
29-Mar-2019 13:59:25 ---> Using cache
29-Mar-2019 13:59:25 ---> 7d128e650d25
29-Mar-2019 13:59:25 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/
29-Mar-2019 13:59:25 ---> Using cache
29-Mar-2019 13:59:25 ---> 39bcbd9487a2
29-Mar-2019 13:59:25 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
29-Mar-2019 13:59:25 ---> Using cache
29-Mar-2019 13:59:25 ---> 8d9e49590a39
29-Mar-2019 13:59:25 Step 7/9 : WORKDIR /home/clowder
29-Mar-2019 13:59:25 ---> Using cache
29-Mar-2019 13:59:25 ---> 4d9a3b1b8576
29-Mar-2019 13:59:25 Step 8/9 : COPY notifications.json /home/clowder
29-Mar-2019 13:59:25 ---> Using cache
29-Mar-2019 13:59:25 ---> d1d2b2a0bf7a
29-Mar-2019 13:59:25 Step 9/9 : CMD python "./${MAIN_SCRIPT}"
29-Mar-2019 13:59:25 ---> Using cache
29-Mar-2019 13:59:25 ---> 2c4fc8cb76d4
29-Mar-2019 13:59:25 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
29-Mar-2019 13:59:25 Successfully built 2c4fc8cb76d4
29-Mar-2019 13:59:25 Successfully tagged clowder/pyclowder-python3:latest
29-Mar-2019 13:59:26 Sending build context to Docker daemon  267.3kB
29-Mar-2019 13:59:26
29-Mar-2019 13:59:26 Step 1/6 : FROM clowder/pyclowder
29-Mar-2019 13:59:26 ---> 2c4fc8cb76d4
29-Mar-2019 13:59:26 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> d9007a5c4713
29-Mar-2019 13:59:26 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 58f5515fefbd
29-Mar-2019 13:59:26 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 98ceb5c92b14
29-Mar-2019 13:59:26 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> ba4c3c281bd1
29-Mar-2019 13:59:26 Step 6/6 : ONBUILD ADD . /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 458aef3d415d
29-Mar-2019 13:59:26 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
29-Mar-2019 13:59:26 Successfully built 458aef3d415d
29-Mar-2019 13:59:26 Successfully tagged clowder/pyclowder-python3:onbuild
29-Mar-2019 13:59:26 Sending build context to Docker daemon  6.656kB
29-Mar-2019 13:59:26
29-Mar-2019 13:59:26 Step 1/9 : FROM clowder/pyclowder:onbuild
29-Mar-2019 13:59:26 # Executing 5 build triggers
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> d7de40e42b7e
29-Mar-2019 13:59:26 Step 2/9 : ENV EXTRACTION_FUNC=""
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 290dc7fe1b42
29-Mar-2019 13:59:26 Step 3/9 : ENV EXTRACTION_MODULE=""
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 891e59622d56
29-Mar-2019 13:59:26 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> e0d6e805af6a
29-Mar-2019 13:59:26 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 98a971552d24
29-Mar-2019 13:59:26 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> b264958a8d17
29-Mar-2019 13:59:26 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 9a0fad295156
29-Mar-2019 13:59:26 Step 8/9 : ONBUILD ADD . /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 5af0453be595
29-Mar-2019 13:59:26 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 292995919abd
29-Mar-2019 13:59:26 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
29-Mar-2019 13:59:26 Successfully built 292995919abd
29-Mar-2019 13:59:26 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild
29-Mar-2019 13:59:26 Sending build context to Docker daemon  13.31kB
29-Mar-2019 13:59:26
29-Mar-2019 13:59:26 Step 1/10 : FROM clowder/pyclowder:latest
29-Mar-2019 13:59:26 ---> 2c4fc8cb76d4
29-Mar-2019 13:59:26 Step 2/10 : ENV R_SCRIPT=""     R_FUNCTION=""
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 1ad19a83d77c
29-Mar-2019 13:59:26 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> ea0216459c1f
29-Mar-2019 13:59:26 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 5ea59fc5dd9b
29-Mar-2019 13:59:26 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 406d02b8cdfa
29-Mar-2019 13:59:26 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 2217fa553eeb
29-Mar-2019 13:59:26 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> b00b468b57ec
29-Mar-2019 13:59:26 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> 707c1ece44ab
29-Mar-2019 13:59:26 Step 9/10 : ONBUILD ADD . /home/clowder/
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> a499cea23229
29-Mar-2019 13:59:26 Step 10/10 : CMD python r_extractor.py
29-Mar-2019 13:59:26 ---> Using cache
29-Mar-2019 13:59:26 ---> e2352836989d
29-Mar-2019 13:59:26 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
29-Mar-2019 13:59:26 Successfully built e2352836989d
29-Mar-2019 13:59:26 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild
29-Mar-2019 13:59:26 Sending build context to Docker daemon  9.216kB
29-Mar-2019 13:59:26
29-Mar-2019 13:59:26 Step 1/2 : FROM clowder/pyclowder:onbuild
29-Mar-2019 13:59:26 # Executing 5 build triggers
29-Mar-2019 13:59:27 ---> Running in 603db9141fcf
29-Mar-2019 13:59:29 Removing intermediate container 603db9141fcf
29-Mar-2019 13:59:30 ---> Running in 7a04b638a316
29-Mar-2019 13:59:32 Removing intermediate container 7a04b638a316
29-Mar-2019 13:59:33 ---> 7d8c9b77c7a2
29-Mar-2019 13:59:33 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py"
29-Mar-2019 13:59:33 ---> Running in 6d4504701634
29-Mar-2019 13:59:34 Removing intermediate container 6d4504701634
29-Mar-2019 13:59:34 ---> 5ed62f228a4e
29-Mar-2019 13:59:34 Successfully built 5ed62f228a4e
29-Mar-2019 13:59:34 Successfully tagged clowder/extractors-wordcount:latest
29-Mar-2019 13:59:34 Sending build context to Docker daemon   5.12kB
29-Mar-2019 13:59:34
29-Mar-2019 13:59:34 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild
29-Mar-2019 13:59:34 # Executing 5 build triggers
29-Mar-2019 13:59:35 ---> Running in 21657b41a0e7
29-Mar-2019 13:59:37 Removing intermediate container 21657b41a0e7
29-Mar-2019 13:59:38 ---> Running in 6ffa6b02d833
29-Mar-2019 13:59:41 Removing intermediate container 6ffa6b02d833
29-Mar-2019 13:59:41 ---> 8c1b7378a669
29-Mar-2019 13:59:41 Step 2/3 : ENV EXTRACTION_FUNC="wordcount"
29-Mar-2019 13:59:41 ---> Running in 1f5d28a6f821
29-Mar-2019 13:59:42 Removing intermediate container 1f5d28a6f821
29-Mar-2019 13:59:42 ---> 98c161b60fd9
29-Mar-2019 13:59:42 Step 3/3 : ENV EXTRACTION_MODULE="wordcount"
29-Mar-2019 13:59:42 ---> Running in 351b9e74ed8c
29-Mar-2019 13:59:43 Removing intermediate container 351b9e74ed8c
29-Mar-2019 13:59:43 ---> 43deb8121ced
29-Mar-2019 13:59:43 Successfully built 43deb8121ced
29-Mar-2019 13:59:43 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest
29-Mar-2019 13:59:43 Sending build context to Docker daemon   5.12kB
29-Mar-2019 13:59:43
29-Mar-2019 13:59:43 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild
29-Mar-2019 13:59:43 # Executing 5 build triggers
29-Mar-2019 13:59:44 ---> Running in 06fdf88517d6
29-Mar-2019 13:59:50 Removing intermediate container 06fdf88517d6
29-Mar-2019 13:59:51 ---> Running in a3da7aa61965
29-Mar-2019 13:59:53 Removing intermediate container a3da7aa61965
29-Mar-2019 13:59:53 ---> 55da1bb8aeea
29-Mar-2019 13:59:53 Step 2/2 : ENV R_SCRIPT="wordcount.R"     R_FUNCTION="process_file"
29-Mar-2019 13:59:54 ---> Running in 1d96da9d41c7
29-Mar-2019 13:59:54 Removing intermediate container 1d96da9d41c7
29-Mar-2019 13:59:54 ---> 39d0885a68ad
29-Mar-2019 13:59:54 Successfully built 39d0885a68ad
29-Mar-2019 13:59:55 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest
29-Mar-2019 13:59:55 Sending build context to Docker daemon  8.192kB
29-Mar-2019 13:59:55
29-Mar-2019 13:59:55 Step 1/7 : FROM python:3.5
29-Mar-2019 13:59:55 3.5: Pulling from library/python
29-Mar-2019 13:59:55 e79bb959ec00: Pulling fs layer
29-Mar-2019 13:59:55 d4b7902036fe: Pulling fs layer
29-Mar-2019 13:59:55 1b2a72d4e030: Pulling fs layer
29-Mar-2019 13:59:55 d54db43011fd: Pulling fs layer
29-Mar-2019 13:59:55 69d473365bb3: Pulling fs layer
29-Mar-2019 13:59:55 35b4aebab92b: Pulling fs layer
29-Mar-2019 13:59:55 83a8b8905f6c: Pulling fs layer
29-Mar-2019 13:59:55 618457f5476e: Pulling fs layer
29-Mar-2019 13:59:55 9b4f56490eea: Pulling fs layer
29-Mar-2019 13:59:55 35b4aebab92b: Waiting
29-Mar-2019 13:59:55 83a8b8905f6c: Waiting
29-Mar-2019 13:59:55 618457f5476e: Waiting
29-Mar-2019 13:59:55 9b4f56490eea: Waiting
29-Mar-2019 13:59:55 d54db43011fd: Waiting
29-Mar-2019 13:59:55 69d473365bb3: Waiting
29-Mar-2019 13:59:56 1b2a72d4e030: Verifying Checksum
29-Mar-2019 13:59:56 1b2a72d4e030: Download complete
29-Mar-2019 13:59:56 d4b7902036fe: Verifying Checksum
29-Mar-2019 13:59:56 d4b7902036fe: Download complete
29-Mar-2019 13:59:57 e79bb959ec00: Verifying Checksum
29-Mar-2019 13:59:57 e79bb959ec00: Download complete
29-Mar-2019 13:59:57 35b4aebab92b: Verifying Checksum
29-Mar-2019 13:59:57 35b4aebab92b: Download complete
29-Mar-2019 13:59:57 d54db43011fd: Verifying Checksum
29-Mar-2019 13:59:57 d54db43011fd: Download complete
29-Mar-2019 13:59:57 618457f5476e: Verifying Checksum
29-Mar-2019 13:59:57 618457f5476e: Download complete
29-Mar-2019 13:59:58 9b4f56490eea: Download complete
29-Mar-2019 13:59:58 83a8b8905f6c: Verifying Checksum
29-Mar-2019 13:59:58 83a8b8905f6c: Download complete
29-Mar-2019 13:59:59 e79bb959ec00: Pull complete
29-Mar-2019 14:00:00 d4b7902036fe: Pull complete
29-Mar-2019 14:00:01 1b2a72d4e030: Pull complete
29-Mar-2019 14:00:02 69d473365bb3: Verifying Checksum
29-Mar-2019 14:00:02 69d473365bb3: Download complete
29-Mar-2019 14:00:04 d54db43011fd: Pull complete
29-Mar-2019 14:00:13 69d473365bb3: Pull complete
29-Mar-2019 14:00:14 35b4aebab92b: Pull complete
29-Mar-2019 14:00:15 83a8b8905f6c: Pull complete
29-Mar-2019 14:00:16 618457f5476e: Pull complete
29-Mar-2019 14:00:16 9b4f56490eea: Pull complete
29-Mar-2019 14:00:16 Digest: sha256:92d649f4a662abbfb223f9327b30b28b2548e18b577e0143775946e9fbde168a
29-Mar-2019 14:00:17 Status: Downloaded newer image for python:3.5
29-Mar-2019 14:00:17 ---> 2bf898387bbd
29-Mar-2019 14:00:17 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F"
29-Mar-2019 14:00:17 ---> Running in 55ce036f4dce
29-Mar-2019 14:00:17 Removing intermediate container 55ce036f4dce
29-Mar-2019 14:00:17 ---> 6b41aa379fff
29-Mar-2019 14:00:17 Step 3/7 : EXPOSE 9999
29-Mar-2019 14:00:17 ---> Running in c29693fea37a
29-Mar-2019 14:00:18 Removing intermediate container c29693fea37a
29-Mar-2019 14:00:18 ---> 9e07a40437c9
29-Mar-2019 14:00:18 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4
29-Mar-2019 14:00:18 ---> Running in 0fa565629f8c
29-Mar-2019 14:00:20 Collecting pika==0.11.2
29-Mar-2019 14:00:21   Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB)
29-Mar-2019 14:00:21 Collecting requests==2.18.4
29-Mar-2019 14:00:21   Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB)
29-Mar-2019 14:00:21 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4)
29-Mar-2019 14:00:21   Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB)
29-Mar-2019 14:00:21 Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4)
29-Mar-2019 14:00:21   Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB)
29-Mar-2019 14:00:21 Collecting idna<2.7,>=2.5 (from requests==2.18.4)
29-Mar-2019 14:00:21   Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB)
29-Mar-2019 14:00:21 Collecting certifi>=2017.4.17 (from requests==2.18.4)
29-Mar-2019 14:00:21   Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB)
29-Mar-2019 14:00:21 Installing collected packages: pika, chardet, urllib3, idna, certifi, requests
29-Mar-2019 14:00:21 Successfully installed certifi-2019.3.9 chardet-3.0.4 idna-2.6 pika-0.11.2 requests-2.18.4 urllib3-1.22
29-Mar-2019 14:00:23 Removing intermediate container 0fa565629f8c
29-Mar-2019 14:00:23 ---> 8bdffcc978cb
29-Mar-2019 14:00:23 Step 5/7 : WORKDIR /src
29-Mar-2019 14:00:23 ---> Running in 1f2679002631
29-Mar-2019 14:00:24 Removing intermediate container 1f2679002631
29-Mar-2019 14:00:24 ---> bef37b7c3f42
29-Mar-2019 14:00:24 Step 6/7 : COPY monitor.py /src/
29-Mar-2019 14:00:24 ---> adfe437020d2
29-Mar-2019 14:00:24 Step 7/7 : CMD python monitor.py
29-Mar-2019 14:00:25 ---> Running in e7f15d08b16a
29-Mar-2019 14:00:25 Removing intermediate container e7f15d08b16a
29-Mar-2019 14:00:25 ---> a4ae5d79918b
29-Mar-2019 14:00:25 Successfully built a4ae5d79918b
29-Mar-2019 14:00:25 Successfully tagged clowder/extractors-monitor:latest
29-Mar-2019 14:00:25 Finished task 'docker build' with result: Success
29-Mar-2019 14:00:25 Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
29-Mar-2019 14:00:25
Beginning to execute external process for build 'Clowder - pyclowder2 - develop - Default Job #22 (CATS-PYC265-JOB1-22)'
... running command line:
/bin/sh release.sh
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1
... using extra environment variables:
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bamboo_planRepository_1_branchDisplayName=develop
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bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_repository_157745161_name=pyclowder2
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1
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bamboo_capability_system_os=linux
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bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt
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bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC265-JOB1-22
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bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
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bamboo_shortJobKey=JOB1
bamboo_planRepository_revision=764d9e0e516bfc4aba00f9e03b402858665c62af
bamboo_buildTimeStamp=2019-03-29T13:53:56.810-05:00
bamboo_repository_previous_revision_number=10debfa0397ca1231d58a0a7f93b887919d02b82
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_repository_157745161_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC265-JOB1-22-ScriptBuildTask-2407239768319061594.sh
bamboo_planRepository_previousRevision=10debfa0397ca1231d58a0a7f93b887919d02b82
bamboo_repository_157745161_git_username=
bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh
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bamboo_buildPlanName=Clowder - pyclowder2 - develop - Default Job
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bamboo_capability_system_builder_command_python3=/usr/bin/python3
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bamboo_buildFailed=false
bamboo_repository_157745161_git_branch=develop
bamboo_capability_system_docker_executable=/usr/bin/docker
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_branch=develop
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
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bamboo_planRepository_1_branchName=develop
29-Mar-2019 14:00:26 Sending build context to Docker daemon  268.8kB
29-Mar-2019 14:00:26
29-Mar-2019 14:00:26 Step 1/9 : FROM ubuntu:16.04
29-Mar-2019 14:00:26 ---> 9361ce633ff1
29-Mar-2019 14:00:26 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> e316328c72be
29-Mar-2019 14:00:26 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends         python         python-pip     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/*
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> c325ed925488
29-Mar-2019 14:00:26 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 7d128e650d25
29-Mar-2019 14:00:26 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 39bcbd9487a2
29-Mar-2019 14:00:26 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 8d9e49590a39
29-Mar-2019 14:00:26 Step 7/9 : WORKDIR /home/clowder
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 4d9a3b1b8576
29-Mar-2019 14:00:26 Step 8/9 : COPY notifications.json /home/clowder
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> d1d2b2a0bf7a
29-Mar-2019 14:00:26 Step 9/9 : CMD python "./${MAIN_SCRIPT}"
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 2c4fc8cb76d4
29-Mar-2019 14:00:26 Successfully built 2c4fc8cb76d4
29-Mar-2019 14:00:26 Successfully tagged clowder/pyclowder:latest
29-Mar-2019 14:00:26 Sending build context to Docker daemon  267.3kB
29-Mar-2019 14:00:26
29-Mar-2019 14:00:26 Step 1/6 : FROM clowder/pyclowder
29-Mar-2019 14:00:26 ---> 2c4fc8cb76d4
29-Mar-2019 14:00:26 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> d9007a5c4713
29-Mar-2019 14:00:26 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 58f5515fefbd
29-Mar-2019 14:00:26 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 98ceb5c92b14
29-Mar-2019 14:00:26 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> ba4c3c281bd1
29-Mar-2019 14:00:26 Step 6/6 : ONBUILD ADD . /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 458aef3d415d
29-Mar-2019 14:00:26 Successfully built 458aef3d415d
29-Mar-2019 14:00:26 Successfully tagged clowder/pyclowder:onbuild
29-Mar-2019 14:00:26 Sending build context to Docker daemon   12.8kB
29-Mar-2019 14:00:26
29-Mar-2019 14:00:26 Step 1/5 : FROM clowder/pyclowder:onbuild
29-Mar-2019 14:00:26 # Executing 5 build triggers
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> a24ceb08f6e0
29-Mar-2019 14:00:26 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py"     RABBITMQ_QUEUE=""     IMAGE_BINARY=""     IMAGE_TYPE=""     IMAGE_THUMBNAIL_COMMAND=""     IMAGE_PREVIEW_COMMAND=""     PREVIEW_BINARY=""     PREVIEW_TYPE=""     PREVIEW_COMMAND=""
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> a6537f1d8fa7
29-Mar-2019 14:00:26 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> aab3bc205b6b
29-Mar-2019 14:00:26 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> d9cb928afaba
29-Mar-2019 14:00:26 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 9117b47e291c
29-Mar-2019 14:00:26 Successfully built 9117b47e291c
29-Mar-2019 14:00:26 Successfully tagged clowder/extractors-binary-preview:onbuild
29-Mar-2019 14:00:26 Sending build context to Docker daemon  6.656kB
29-Mar-2019 14:00:26
29-Mar-2019 14:00:26 Step 1/9 : FROM clowder/pyclowder:onbuild
29-Mar-2019 14:00:26 # Executing 5 build triggers
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> d7de40e42b7e
29-Mar-2019 14:00:26 Step 2/9 : ENV EXTRACTION_FUNC=""
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 290dc7fe1b42
29-Mar-2019 14:00:26 Step 3/9 : ENV EXTRACTION_MODULE=""
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 891e59622d56
29-Mar-2019 14:00:26 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> e0d6e805af6a
29-Mar-2019 14:00:26 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 98a971552d24
29-Mar-2019 14:00:26 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> b264958a8d17
29-Mar-2019 14:00:26 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 9a0fad295156
29-Mar-2019 14:00:26 Step 8/9 : ONBUILD ADD . /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 5af0453be595
29-Mar-2019 14:00:26 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 292995919abd
29-Mar-2019 14:00:26 Successfully built 292995919abd
29-Mar-2019 14:00:26 Successfully tagged clowder/extractors-simple-extractor:onbuild
29-Mar-2019 14:00:26 Sending build context to Docker daemon  13.31kB
29-Mar-2019 14:00:26
29-Mar-2019 14:00:26 Step 1/10 : FROM clowder/pyclowder:latest
29-Mar-2019 14:00:26 ---> 2c4fc8cb76d4
29-Mar-2019 14:00:26 Step 2/10 : ENV R_SCRIPT=""     R_FUNCTION=""
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 1ad19a83d77c
29-Mar-2019 14:00:26 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> ea0216459c1f
29-Mar-2019 14:00:26 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 5ea59fc5dd9b
29-Mar-2019 14:00:26 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 406d02b8cdfa
29-Mar-2019 14:00:26 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 2217fa553eeb
29-Mar-2019 14:00:26 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> b00b468b57ec
29-Mar-2019 14:00:26 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> 707c1ece44ab
29-Mar-2019 14:00:26 Step 9/10 : ONBUILD ADD . /home/clowder/
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> a499cea23229
29-Mar-2019 14:00:26 Step 10/10 : CMD python r_extractor.py
29-Mar-2019 14:00:26 ---> Using cache
29-Mar-2019 14:00:26 ---> e2352836989d
29-Mar-2019 14:00:26 Successfully built e2352836989d
29-Mar-2019 14:00:26 Successfully tagged clowder/extractors-simple-r-extractor:onbuild
29-Mar-2019 14:00:27 Sending build context to Docker daemon  268.8kB
29-Mar-2019 14:00:27
29-Mar-2019 14:00:27 Step 1/9 : FROM ubuntu:16.04
29-Mar-2019 14:00:27 ---> 9361ce633ff1
29-Mar-2019 14:00:27 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> e316328c72be
29-Mar-2019 14:00:27 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends         python         python-pip     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/*
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> c325ed925488
29-Mar-2019 14:00:27 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 7d128e650d25
29-Mar-2019 14:00:27 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 39bcbd9487a2
29-Mar-2019 14:00:27 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 8d9e49590a39
29-Mar-2019 14:00:27 Step 7/9 : WORKDIR /home/clowder
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 4d9a3b1b8576
29-Mar-2019 14:00:27 Step 8/9 : COPY notifications.json /home/clowder
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> d1d2b2a0bf7a
29-Mar-2019 14:00:27 Step 9/9 : CMD python "./${MAIN_SCRIPT}"
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 2c4fc8cb76d4
29-Mar-2019 14:00:27 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
29-Mar-2019 14:00:27 Successfully built 2c4fc8cb76d4
29-Mar-2019 14:00:27 Successfully tagged clowder/pyclowder-python3:latest
29-Mar-2019 14:00:27 Sending build context to Docker daemon  267.3kB
29-Mar-2019 14:00:27
29-Mar-2019 14:00:27 Step 1/6 : FROM clowder/pyclowder
29-Mar-2019 14:00:27 ---> 2c4fc8cb76d4
29-Mar-2019 14:00:27 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> d9007a5c4713
29-Mar-2019 14:00:27 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 58f5515fefbd
29-Mar-2019 14:00:27 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 98ceb5c92b14
29-Mar-2019 14:00:27 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> ba4c3c281bd1
29-Mar-2019 14:00:27 Step 6/6 : ONBUILD ADD . /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 458aef3d415d
29-Mar-2019 14:00:27 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
29-Mar-2019 14:00:27 Successfully built 458aef3d415d
29-Mar-2019 14:00:27 Successfully tagged clowder/pyclowder-python3:onbuild
29-Mar-2019 14:00:27 Sending build context to Docker daemon  6.656kB
29-Mar-2019 14:00:27
29-Mar-2019 14:00:27 Step 1/9 : FROM clowder/pyclowder:onbuild
29-Mar-2019 14:00:27 # Executing 5 build triggers
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> d7de40e42b7e
29-Mar-2019 14:00:27 Step 2/9 : ENV EXTRACTION_FUNC=""
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 290dc7fe1b42
29-Mar-2019 14:00:27 Step 3/9 : ENV EXTRACTION_MODULE=""
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 891e59622d56
29-Mar-2019 14:00:27 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> e0d6e805af6a
29-Mar-2019 14:00:27 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 98a971552d24
29-Mar-2019 14:00:27 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> b264958a8d17
29-Mar-2019 14:00:27 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 9a0fad295156
29-Mar-2019 14:00:27 Step 8/9 : ONBUILD ADD . /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 5af0453be595
29-Mar-2019 14:00:27 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 292995919abd
29-Mar-2019 14:00:27 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
29-Mar-2019 14:00:27 Successfully built 292995919abd
29-Mar-2019 14:00:27 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild
29-Mar-2019 14:00:27 Sending build context to Docker daemon  13.31kB
29-Mar-2019 14:00:27
29-Mar-2019 14:00:27 Step 1/10 : FROM clowder/pyclowder:latest
29-Mar-2019 14:00:27 ---> 2c4fc8cb76d4
29-Mar-2019 14:00:27 Step 2/10 : ENV R_SCRIPT=""     R_FUNCTION=""
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 1ad19a83d77c
29-Mar-2019 14:00:27 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> ea0216459c1f
29-Mar-2019 14:00:27 Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 5ea59fc5dd9b
29-Mar-2019 14:00:27 Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 406d02b8cdfa
29-Mar-2019 14:00:27 Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 2217fa553eeb
29-Mar-2019 14:00:27 Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> b00b468b57ec
29-Mar-2019 14:00:27 Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> 707c1ece44ab
29-Mar-2019 14:00:27 Step 9/10 : ONBUILD ADD . /home/clowder/
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> a499cea23229
29-Mar-2019 14:00:27 Step 10/10 : CMD python r_extractor.py
29-Mar-2019 14:00:27 ---> Using cache
29-Mar-2019 14:00:27 ---> e2352836989d
29-Mar-2019 14:00:27 [Warning] One or more build-args [PYTHON_VERSION] were not consumed
29-Mar-2019 14:00:27 Successfully built e2352836989d
29-Mar-2019 14:00:27 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild
29-Mar-2019 14:00:27 Sending build context to Docker daemon  9.216kB
29-Mar-2019 14:00:27
29-Mar-2019 14:00:28 Step 1/2 : FROM clowder/pyclowder:onbuild
29-Mar-2019 14:00:28 # Executing 5 build triggers
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 7d8c9b77c7a2
29-Mar-2019 14:00:28 Step 2/2 : ENV MAIN_SCRIPT="wordcount.py"
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 5ed62f228a4e
29-Mar-2019 14:00:28 Successfully built 5ed62f228a4e
29-Mar-2019 14:00:28 Successfully tagged clowder/extractors-wordcount:latest
29-Mar-2019 14:00:28 Sending build context to Docker daemon   5.12kB
29-Mar-2019 14:00:28
29-Mar-2019 14:00:28 Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild
29-Mar-2019 14:00:28 # Executing 5 build triggers
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 8c1b7378a669
29-Mar-2019 14:00:28 Step 2/3 : ENV EXTRACTION_FUNC="wordcount"
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 98c161b60fd9
29-Mar-2019 14:00:28 Step 3/3 : ENV EXTRACTION_MODULE="wordcount"
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 43deb8121ced
29-Mar-2019 14:00:28 Successfully built 43deb8121ced
29-Mar-2019 14:00:28 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest
29-Mar-2019 14:00:28 Sending build context to Docker daemon   5.12kB
29-Mar-2019 14:00:28
29-Mar-2019 14:00:28 Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild
29-Mar-2019 14:00:28 # Executing 5 build triggers
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 55da1bb8aeea
29-Mar-2019 14:00:28 Step 2/2 : ENV R_SCRIPT="wordcount.R"     R_FUNCTION="process_file"
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 39d0885a68ad
29-Mar-2019 14:00:28 Successfully built 39d0885a68ad
29-Mar-2019 14:00:28 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest
29-Mar-2019 14:00:28 Sending build context to Docker daemon  8.192kB
29-Mar-2019 14:00:28
29-Mar-2019 14:00:28 Step 1/7 : FROM python:3.5
29-Mar-2019 14:00:28 ---> 2bf898387bbd
29-Mar-2019 14:00:28 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F"
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 6b41aa379fff
29-Mar-2019 14:00:28 Step 3/7 : EXPOSE 9999
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 9e07a40437c9
29-Mar-2019 14:00:28 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> 8bdffcc978cb
29-Mar-2019 14:00:28 Step 5/7 : WORKDIR /src
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> bef37b7c3f42
29-Mar-2019 14:00:28 Step 6/7 : COPY monitor.py /src/
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> adfe437020d2
29-Mar-2019 14:00:28 Step 7/7 : CMD python monitor.py
29-Mar-2019 14:00:28 ---> Using cache
29-Mar-2019 14:00:28 ---> a4ae5d79918b
29-Mar-2019 14:00:28 Successfully built a4ae5d79918b
29-Mar-2019 14:00:28 Successfully tagged clowder/extractors-monitor:latest
29-Mar-2019 14:00:28 The push refers to repository [docker.io/clowder/pyclowder]
29-Mar-2019 14:00:29 28a8c67332e0: Preparing
29-Mar-2019 14:00:29 87b35a1294fd: Preparing
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29-Mar-2019 14:00:29 7dd604ffa87f: Preparing
29-Mar-2019 14:00:29 aa54c2bc1229: Preparing
29-Mar-2019 14:00:29 dbea37522364: Waiting
29-Mar-2019 14:00:29 aa54c2bc1229: Waiting
29-Mar-2019 14:00:29 297fd071ca2f: Waiting
29-Mar-2019 14:00:29 2f0d1e8214b2: Waiting
29-Mar-2019 14:00:29 7dd604ffa87f: Waiting
29-Mar-2019 14:00:30 28a8c67332e0: Pushed
29-Mar-2019 14:00:30 943d02547c6d: Pushed
29-Mar-2019 14:00:30 87b35a1294fd: Pushed
29-Mar-2019 14:00:30 ac6105dfab4c: Pushed
29-Mar-2019 14:00:31 297fd071ca2f: Mounted from clowder/mongo-init
29-Mar-2019 14:00:31 2f0d1e8214b2: Mounted from clowder/mongo-init
29-Mar-2019 14:00:31 8257b932a310: Pushed
29-Mar-2019 14:00:31 7dd604ffa87f: Mounted from clowder/mongo-init
29-Mar-2019 14:00:31 aa54c2bc1229: Mounted from clowder/mongo-init
29-Mar-2019 14:00:36 dbea37522364: Pushed
29-Mar-2019 14:00:38 develop: digest: sha256:4a95fb117121d0667635a1bd1106a985faf61f1d72c29795f9c6f3249584f054 size: 2404
29-Mar-2019 14:00:41 The push refers to repository [docker.io/clowder/pyclowder-python3]
29-Mar-2019 14:00:41 28a8c67332e0: Preparing
29-Mar-2019 14:00:41 87b35a1294fd: Preparing
29-Mar-2019 14:00:41 8257b932a310: Preparing
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29-Mar-2019 14:00:41 2f0d1e8214b2: Preparing
29-Mar-2019 14:00:41 7dd604ffa87f: Preparing
29-Mar-2019 14:00:41 aa54c2bc1229: Preparing
29-Mar-2019 14:00:41 2f0d1e8214b2: Waiting
29-Mar-2019 14:00:41 7dd604ffa87f: Waiting
29-Mar-2019 14:00:41 aa54c2bc1229: Waiting
29-Mar-2019 14:00:41 297fd071ca2f: Waiting
29-Mar-2019 14:00:41 dbea37522364: Waiting
29-Mar-2019 14:00:42 943d02547c6d: Mounted from clowder/pyclowder
29-Mar-2019 14:00:42 28a8c67332e0: Mounted from clowder/pyclowder
29-Mar-2019 14:00:42 ac6105dfab4c: Mounted from clowder/pyclowder
29-Mar-2019 14:00:42 87b35a1294fd: Mounted from clowder/pyclowder
29-Mar-2019 14:00:42 8257b932a310: Mounted from clowder/pyclowder
29-Mar-2019 14:00:43 dbea37522364: Mounted from clowder/pyclowder
29-Mar-2019 14:00:43 297fd071ca2f: Mounted from clowder/pyclowder
29-Mar-2019 14:00:44 2f0d1e8214b2: Mounted from clowder/pyclowder
29-Mar-2019 14:00:44 7dd604ffa87f: Mounted from clowder/pyclowder
29-Mar-2019 14:00:44 aa54c2bc1229: Mounted from clowder/pyclowder
29-Mar-2019 14:00:46 develop: digest: sha256:4a95fb117121d0667635a1bd1106a985faf61f1d72c29795f9c6f3249584f054 size: 2404
29-Mar-2019 14:00:46 The push refers to repository [docker.io/clowder/extractors-monitor]
29-Mar-2019 14:00:46 f2d29f38d8a2: Preparing
29-Mar-2019 14:00:46 1a9996d81c49: Preparing
29-Mar-2019 14:00:46 d271ce0e685c: Preparing
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29-Mar-2019 14:00:46 129f218c0368: Waiting
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29-Mar-2019 14:00:46 0fe19df8b8f8: Preparing
29-Mar-2019 14:00:46 b17cc31e431b: Preparing
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29-Mar-2019 14:00:46 bd5afbfde642: Waiting
29-Mar-2019 14:00:46 0fe19df8b8f8: Waiting
29-Mar-2019 14:00:46 b17cc31e431b: Waiting
29-Mar-2019 14:00:46 604829a174eb: Preparing
29-Mar-2019 14:00:46 fbb641a8b943: Preparing
29-Mar-2019 14:00:46 12cb127eee44: Waiting
29-Mar-2019 14:00:46 604829a174eb: Waiting
29-Mar-2019 14:00:46 fbb641a8b943: Waiting
29-Mar-2019 14:00:47 a4cfd287325b: Mounted from library/python
29-Mar-2019 14:00:47 ab5d9ea2a329: Mounted from library/python
29-Mar-2019 14:00:48 f2d29f38d8a2: Pushed
29-Mar-2019 14:00:48 1a9996d81c49: Pushed
29-Mar-2019 14:00:48 bd5afbfde642: Mounted from library/python
29-Mar-2019 14:00:49 0fe19df8b8f8: Mounted from library/python
29-Mar-2019 14:00:54 129f218c0368: Mounted from library/python
29-Mar-2019 14:00:54 b17cc31e431b: Mounted from library/python
29-Mar-2019 14:00:54 d271ce0e685c: Pushed
29-Mar-2019 14:00:54 12cb127eee44: Mounted from library/python
29-Mar-2019 14:00:54 604829a174eb: Mounted from library/python
29-Mar-2019 14:00:55 fbb641a8b943: Mounted from library/python
29-Mar-2019 14:00:57 develop: digest: sha256:872224f9ea491aa73a664cbc6cce70e9aa082649f07a976edc99d76fabe47f59 size: 2843
29-Mar-2019 14:00:57 The push refers to repository [docker.io/clowder/extractors-wordcount]
29-Mar-2019 14:00:57 eab5248d7aa4: Preparing
29-Mar-2019 14:00:57 819bf0ed07ff: Preparing
29-Mar-2019 14:00:57 dcfa5811bc4b: Preparing
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29-Mar-2019 14:00:57 7dd604ffa87f: Preparing
29-Mar-2019 14:00:57 aa54c2bc1229: Preparing
29-Mar-2019 14:00:57 943d02547c6d: Waiting
29-Mar-2019 14:00:57 dbea37522364: Waiting
29-Mar-2019 14:00:57 297fd071ca2f: Waiting
29-Mar-2019 14:00:57 2f0d1e8214b2: Waiting
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29-Mar-2019 14:00:57 ac6105dfab4c: Waiting
29-Mar-2019 14:00:58 28a8c67332e0: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:00:58 87b35a1294fd: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:00:59 8257b932a310: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:00:59 eab5248d7aa4: Pushed
29-Mar-2019 14:00:59 ac6105dfab4c: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:00:59 819bf0ed07ff: Pushed
29-Mar-2019 14:00:59 dcfa5811bc4b: Pushed
29-Mar-2019 14:01:00 943d02547c6d: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:01:00 2f0d1e8214b2: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:01:00 297fd071ca2f: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:01:00 dbea37522364: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:01:00 7dd604ffa87f: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:01:00 aa54c2bc1229: Mounted from clowder/pyclowder-python3
29-Mar-2019 14:01:02 develop: digest: sha256:4e0d4908aa9e7c350eab29d35028810ab3591e7d27f9bbd83adaac6729715023 size: 3026
29-Mar-2019 14:01:03 The push refers to repository [docker.io/clowder/pyclowder]
29-Mar-2019 14:01:03 28a8c67332e0: Preparing
29-Mar-2019 14:01:03 87b35a1294fd: Preparing
29-Mar-2019 14:01:03 8257b932a310: Preparing
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29-Mar-2019 14:01:03 aa54c2bc1229: Preparing
29-Mar-2019 14:01:03 2f0d1e8214b2: Waiting
29-Mar-2019 14:01:03 7dd604ffa87f: Waiting
29-Mar-2019 14:01:03 dbea37522364: Waiting
29-Mar-2019 14:01:03 aa54c2bc1229: Waiting
29-Mar-2019 14:01:03 297fd071ca2f: Waiting
29-Mar-2019 14:01:03 28a8c67332e0: Layer already exists
29-Mar-2019 14:01:03 943d02547c6d: Layer already exists
29-Mar-2019 14:01:03 8257b932a310: Layer already exists
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29-Mar-2019 14:01:03 7dd604ffa87f: Layer already exists
29-Mar-2019 14:01:03 aa54c2bc1229: Layer already exists
29-Mar-2019 14:01:05 develop-onbuild: digest: sha256:f99c22c405bb108dc5c8473ce91b791435a153af3e8410f7b97c93abdb148a67 size: 2404
29-Mar-2019 14:01:05 The push refers to repository [docker.io/clowder/pyclowder-python3]
29-Mar-2019 14:01:05 28a8c67332e0: Preparing
29-Mar-2019 14:01:05 87b35a1294fd: Preparing
29-Mar-2019 14:01:05 8257b932a310: Preparing
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29-Mar-2019 14:01:05 aa54c2bc1229: Preparing
29-Mar-2019 14:01:05 7dd604ffa87f: Waiting
29-Mar-2019 14:01:05 2f0d1e8214b2: Waiting
29-Mar-2019 14:01:05 dbea37522364: Waiting
29-Mar-2019 14:01:05 297fd071ca2f: Waiting
29-Mar-2019 14:01:05 aa54c2bc1229: Waiting
29-Mar-2019 14:01:05 28a8c67332e0: Layer already exists
29-Mar-2019 14:01:06 ac6105dfab4c: Layer already exists
29-Mar-2019 14:01:06 8257b932a310: Layer already exists
29-Mar-2019 14:01:06 87b35a1294fd: Layer already exists
29-Mar-2019 14:01:06 943d02547c6d: Layer already exists
29-Mar-2019 14:01:06 dbea37522364: Layer already exists
29-Mar-2019 14:01:06 7dd604ffa87f: Layer already exists
29-Mar-2019 14:01:06 297fd071ca2f: Layer already exists
29-Mar-2019 14:01:06 2f0d1e8214b2: Layer already exists
29-Mar-2019 14:01:06 aa54c2bc1229: Layer already exists
29-Mar-2019 14:01:07 develop-onbuild: digest: sha256:f99c22c405bb108dc5c8473ce91b791435a153af3e8410f7b97c93abdb148a67 size: 2404
29-Mar-2019 14:01:07 The push refers to repository [docker.io/clowder/extractors-binary-preview]
29-Mar-2019 14:01:08 7cab92e20170: Preparing
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29-Mar-2019 14:01:13 The push refers to repository [docker.io/clowder/extractors-simple-extractor]
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29-Mar-2019 14:01:18 The push refers to repository [docker.io/clowder/extractors-simple-extractor-python3]
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29-Mar-2019 14:01:23 The push refers to repository [docker.io/clowder/extractors-simple-r-extractor]
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29-Mar-2019 14:02:33 The push refers to repository [docker.io/clowder/extractors-simple-r-extractor-python3]
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29-Mar-2019 14:02:38 Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit'
29-Mar-2019 14:02:38 Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC265-JOB1...
29-Mar-2019 14:02:38 Finished task 'test results' with result: Success
29-Mar-2019 14:02:38 Running post build plugin 'Docker Container Cleanup'
29-Mar-2019 14:02:38 Running post build plugin 'NCover Results Collector'
29-Mar-2019 14:02:38 Running post build plugin 'Clover Results Collector'
29-Mar-2019 14:02:38 Running post build plugin 'npm Cache Cleanup'
29-Mar-2019 14:02:38 Running post build plugin 'Artifact Copier'
29-Mar-2019 14:02:38 Finalising the build...
29-Mar-2019 14:02:38 Stopping timer.
29-Mar-2019 14:02:38 Build CATS-PYC265-JOB1-22 completed.
29-Mar-2019 14:02:38 Running on server: post build plugin 'NCover Results Collector'
29-Mar-2019 14:02:38 Running on server: post build plugin 'Build Hanging Detection Configuration'
29-Mar-2019 14:02:38 Running on server: post build plugin 'Clover Delta Calculator'
29-Mar-2019 14:02:38 Running on server: post build plugin 'Maven Dependencies Postprocessor'
29-Mar-2019 14:02:38 All post build plugins have finished
29-Mar-2019 14:02:38 Generating build results summary...
29-Mar-2019 14:02:39 Saving build results to disk...
29-Mar-2019 14:02:39 Logging substituted variables...
29-Mar-2019 14:02:39 Indexing build results...
29-Mar-2019 14:02:39 Finished building CATS-PYC265-JOB1-22.