Next Generation of pyClowder
Build: #14 failed
Job: Default Job failed
Build log
The build generated 136 lines of output. Download or view full build log.
| 30-Nov-2018 11:19:33 | Build Clowder - pyclowder2 - clowder-clients-clean - Default Job #14 (CATS-PYC267-JOB1-14) started building on agent buildserver-3.os.ncsa.edu |
| 30-Nov-2018 11:19:33 | Remote agent on host buildserver-3.os.ncsa.edu |
| 30-Nov-2018 11:19:33 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1 |
| 30-Nov-2018 11:19:33 | Executing build Clowder - pyclowder2 - clowder-clients-clean - Default Job #14 (CATS-PYC267-JOB1-14) |
| 30-Nov-2018 11:19:33 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 30-Nov-2018 11:19:33 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1 |
| 30-Nov-2018 11:19:33 | Updating source code to revision: 11109681d8b687cc1d7b55028e1ce83aebeb40e1 |
| 30-Nov-2018 11:19:33 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/.git'. |
| 30-Nov-2018 11:19:33 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/.git/ |
| 30-Nov-2018 11:20:40 | Fetching 'refs/heads/clowder-clients-clean' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. |
| 30-Nov-2018 11:20:40 | Warning: Permanently added '[127.0.0.1]:34512' (RSA) to the list of known hosts. |
| 30-Nov-2018 11:20:40 | From ssh://127.0.0.1:34512/cats/pyclowder2 |
| 30-Nov-2018 11:20:40 | * [new branch] clowder-clients-clean -> clowder-clients-clean |
| 30-Nov-2018 11:20:40 | Checking out revision 11109681d8b687cc1d7b55028e1ce83aebeb40e1. |
| 30-Nov-2018 11:20:40 | fatal: reference is not a tree: 11109681d8b687cc1d7b55028e1ce83aebeb40e1 |
| 30-Nov-2018 11:20:40 | Checkout to revision 11109681d8b687cc1d7b55028e1ce83aebeb40e1 has failed. |
| 30-Nov-2018 11:20:40 | Warning: failed to checkout source code to directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1', trying to recover... |
| 30-Nov-2018 11:20:40 | Cleaned source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1'... |
| 30-Nov-2018 11:20:40 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/.git'. |
| 30-Nov-2018 11:20:40 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/.git/ |
| 30-Nov-2018 11:20:40 | Fetching 'refs/heads/clowder-clients-clean' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. |
| 30-Nov-2018 11:20:40 | Warning: Permanently added '[127.0.0.1]:34512' (RSA) to the list of known hosts. |
| 30-Nov-2018 11:20:42 | From ssh://127.0.0.1:34512/cats/pyclowder2 |
| 30-Nov-2018 11:20:42 | * [new branch] clowder-clients-clean -> clowder-clients-clean |
| 30-Nov-2018 11:20:42 | * [new tag] 2.0.2 -> 2.0.2 |
| 30-Nov-2018 11:20:42 | Fetching to source directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1' completed, proceeding with checkout... |
| 30-Nov-2018 11:20:42 | Checking out revision 11109681d8b687cc1d7b55028e1ce83aebeb40e1. |
| 30-Nov-2018 11:20:42 | Note: checking out '11109681d8b687cc1d7b55028e1ce83aebeb40e1'. |
| 30-Nov-2018 11:20:42 | |
| 30-Nov-2018 11:20:42 | You are in 'detached HEAD' state. You can look around, make experimental |
| 30-Nov-2018 11:20:42 | changes and commit them, and you can discard any commits you make in this |
| 30-Nov-2018 11:20:42 | state without impacting any branches by performing another checkout. |
| 30-Nov-2018 11:20:42 | |
| 30-Nov-2018 11:20:42 | If you want to create a new branch to retain commits you create, you may |
| 30-Nov-2018 11:20:42 | do so (now or later) by using -b with the checkout command again. Example: |
| 30-Nov-2018 11:20:42 | |
| 30-Nov-2018 11:20:42 | git checkout -b <new-branch-name> |
| 30-Nov-2018 11:20:42 | |
| 30-Nov-2018 11:20:42 | HEAD is now at 1110968... all methods inside CollectionsApi |
| 30-Nov-2018 11:20:42 | Checkout completed, recover successful. |
| 30-Nov-2018 11:20:42 | Updated source code to revision: 11109681d8b687cc1d7b55028e1ce83aebeb40e1 |
| 30-Nov-2018 11:20:42 | Finished task 'Checkout Default Repository' with result: Success |
| 30-Nov-2018 11:20:42 | Running pre-build action: VCS Version Collector |
| 30-Nov-2018 11:20:42 | Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 30-Nov-2018 11:20:42 | Beginning to execute external process for build 'Clowder - pyclowder2 - clowder-clients-clean - Default Job #14 (CATS-PYC267-JOB1-14)' ... running command line: /home/bamboo/bamboo-agent-home/temp/CATS-PYC267-JOB1-14-ScriptBuildTask-1221249509520138944.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=clowder-clients-clean bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_repository_157745170_git_branch=clowder-clients-clean bamboo_planRepository_1_branchDisplayName=clowder-clients-clean bamboo_repository_revision_number=11109681d8b687cc1d7b55028e1ce83aebeb40e1 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC267-JOB1-14 bamboo_repository_157745170_revision_number=11109681d8b687cc1d7b55028e1ce83aebeb40e1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC267-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=clowder-clients-clean bamboo_planRepository_name=pyclowder2 bamboo_buildNumber=14 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_repository_157745170_name=pyclowder2 bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC267-JOB1-14 bamboo_repository_157745170_previous_revision_number=e06ab410f381bd7c26944b3a9cb5beae885572bf bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=143032321 bamboo_planName=Clowder - 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| 30-Nov-2018 11:20:43 | New python executable in /tmp/virtualenv/pyclowder2/bin/python2 |
| 30-Nov-2018 11:20:43 | Also creating executable in /tmp/virtualenv/pyclowder2/bin/python |
| 30-Nov-2018 11:20:46 | Installing setuptools, pkg_resources, pip, wheel...done. |
| 30-Nov-2018 11:20:46 | Running virtualenv with interpreter /usr/bin/python2 |
| 30-Nov-2018 11:20:46 | Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) |
| 30-Nov-2018 11:20:46 | Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl |
| 30-Nov-2018 11:20:46 | Collecting pika==0.10.0 (from -r requirements.txt (line 2)) |
| 30-Nov-2018 11:20:46 | Using cached https://files.pythonhosted.org/packages/26/12/400cf0aca6b1ecf1f00dcd89b246e7a4c8558677304ba067167b8167e714/pika-0.10.0-py2.py3-none-any.whl |
| 30-Nov-2018 11:20:46 | Collecting PyYAML==3.11 (from -r requirements.txt (line 3)) |
| 30-Nov-2018 11:20:46 | Collecting requests==2.10.0 (from -r requirements.txt (line 4)) |
| 30-Nov-2018 11:20:46 | Using cached https://files.pythonhosted.org/packages/99/b4/63d99ba8e189c47d906b43bae18af4396e336f2b1bfec86af31efe2d2cb8/requests-2.10.0-py2.py3-none-any.whl |
| 30-Nov-2018 11:20:47 | Collecting wheel==0.24.0 (from -r requirements.txt (line 5)) |
| 30-Nov-2018 11:20:47 | Using cached https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl |
| 30-Nov-2018 11:20:47 | Collecting pytest==3.0.3 (from -r requirements.txt (line 6)) |
| 30-Nov-2018 11:20:47 | Using cached https://files.pythonhosted.org/packages/a4/e9/bf75a9a91c4a545bad262937d1defa90d95ac912118a706406e21aef889a/pytest-3.0.3-py2.py3-none-any.whl |
| 30-Nov-2018 11:20:47 | Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 7)) |
| 30-Nov-2018 11:20:47 | Collecting urllib3==1.14 (from -r requirements.txt (line 8)) |
| 30-Nov-2018 11:20:47 | Using cached https://files.pythonhosted.org/packages/73/55/63deba73d82dfa39974ca3903110c3e3557ff8758a3a79482810915b385d/urllib3-1.14-py2.py3-none-any.whl |
| 30-Nov-2018 11:20:47 | Collecting py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 6)) |
| 30-Nov-2018 11:20:47 | Using cached https://files.pythonhosted.org/packages/3e/c7/3da685ef117d42ac8d71af525208759742dd235f8094221fdaafcd3dba8f/py-1.7.0-py2.py3-none-any.whl |
| 30-Nov-2018 11:20:47 | Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 7)) |
| 30-Nov-2018 11:20:47 | Using cached https://files.pythonhosted.org/packages/42/3f/669429ce58de2c22d8d2c542752e137ec4b9885fff398d3eceb1a7f5acb4/pep8-1.7.1-py2.py3-none-any.whl |
| 30-Nov-2018 11:20:47 | Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 7)) |
| 30-Nov-2018 11:20:47 | Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7)) |
| 30-Nov-2018 11:20:47 | Using cached https://files.pythonhosted.org/packages/f9/76/3343e69a2a1602052f587898934e5fea395d22310d39c07955596597227c/execnet-1.5.0-py2.py3-none-any.whl |
| 30-Nov-2018 11:20:47 | Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 7)) |
| 30-Nov-2018 11:20:47 | Using cached https://files.pythonhosted.org/packages/67/08/4815a09603fc800209431bec5b8bd2acf2f95abdfb558a44a42507fb94da/apipkg-1.5-py2.py3-none-any.whl |
| 30-Nov-2018 11:20:47 | Installing collected packages: enum34, pika, PyYAML, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8, urllib3 |
| 30-Nov-2018 11:20:47 | Found existing installation: wheel 0.32.3 |
| 30-Nov-2018 11:20:47 | Uninstalling wheel-0.32.3: |
| 30-Nov-2018 11:20:47 | Successfully uninstalled wheel-0.32.3 |
| 30-Nov-2018 11:20:48 | Successfully installed PyYAML-3.11 apipkg-1.5 enum34-1.1.6 execnet-1.5.0 pep8-1.7.1 pika-0.10.0 py-1.7.0 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.10.0 urllib3-1.14 wheel-0.24.0 |
| 30-Nov-2018 11:20:48 | ============================= test session starts ============================== |
| 30-Nov-2018 11:20:48 | platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.7.0, pluggy-0.4.0 |
| 30-Nov-2018 11:20:48 | rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1, inifile: setup.cfg |
| 30-Nov-2018 11:20:48 | plugins: pep8-1.0.6 |
| 30-Nov-2018 11:20:48 | collected 15 items |
| 30-Nov-2018 11:20:48 | |
| 30-Nov-2018 11:20:48 | setup.py . |
| 30-Nov-2018 11:20:48 | docs/source/conf.py . |
| 30-Nov-2018 11:20:48 | pyclowder/__init__.py . |
| 30-Nov-2018 11:20:48 | pyclowder/client.py . |
| 30-Nov-2018 11:20:48 | pyclowder/collections.py F |
| 30-Nov-2018 11:20:48 | pyclowder/connectors.py . |
| 30-Nov-2018 11:20:48 | pyclowder/datasets.py . |
| 30-Nov-2018 11:20:48 | pyclowder/extractors.py . |
| 30-Nov-2018 11:20:48 | pyclowder/files.py F |
| 30-Nov-2018 11:20:48 | pyclowder/geostreams.py . |
| 30-Nov-2018 11:20:48 | pyclowder/sections.py . |
| 30-Nov-2018 11:20:48 | pyclowder/utils.py . |
| 30-Nov-2018 11:20:48 | sample-extractors/echo/echo.py . |
| 30-Nov-2018 11:20:48 | sample-extractors/wordcount/wordcount.py . |
| 30-Nov-2018 11:20:48 | tests/clientTest.py . |
| 30-Nov-2018 11:20:48 | |
| 30-Nov-2018 11:20:48 | generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/test-reports/results.xml |
| 30-Nov-2018 11:20:48 | =================================== FAILURES =================================== |
| 30-Nov-2018 11:20:48 | __________________________________ PEP8-check __________________________________ |
| 30-Nov-2018 11:20:48 | /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/pyclowder/collections.py:8:1: E302 expected 2 blank lines, found 1 |
| 30-Nov-2018 11:20:48 | class CollectionsApi(object): |
| 30-Nov-2018 11:20:48 | ^ |
| 30-Nov-2018 11:20:48 | |
| 30-Nov-2018 11:20:48 | __________________________________ PEP8-check __________________________________ |
| 30-Nov-2018 11:20:48 | /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1/pyclowder/files.py:31:1: E302 expected 2 blank lines, found 1 |
| 30-Nov-2018 11:20:48 | class FilesApi(object): |
| 30-Nov-2018 11:20:48 | ^ |
| 30-Nov-2018 11:20:48 | |
| 30-Nov-2018 11:20:48 | ===================== 2 failed, 13 passed in 0.31 seconds ====================== |
| 30-Nov-2018 11:20:48 | Failing task since return code of [/home/bamboo/bamboo-agent-home/temp/CATS-PYC267-JOB1-14-ScriptBuildTask-1221249509520138944.sh] was 1 while expected 0 |
| 30-Nov-2018 11:20:48 | Finished task 'pytest' with result: Failed |
| 30-Nov-2018 11:20:48 | Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' |
| 30-Nov-2018 11:20:48 | Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC267-JOB1... |
| 30-Nov-2018 11:20:48 | Failing task since 2 failing test cases were found. |
| 30-Nov-2018 11:20:48 | Finished task 'test results' with result: Failed |
| 30-Nov-2018 11:20:48 | Running post build plugin 'Docker Container Cleanup' |
| 30-Nov-2018 11:20:48 | Running post build plugin 'NCover Results Collector' |
| 30-Nov-2018 11:20:48 | Running post build plugin 'Clover Results Collector' |
| 30-Nov-2018 11:20:48 | Running post build plugin 'npm Cache Cleanup' |
| 30-Nov-2018 11:20:48 | Running post build plugin 'Artifact Copier' |
| 30-Nov-2018 11:20:48 | Finalising the build... |
| 30-Nov-2018 11:20:48 | Stopping timer. |
| 30-Nov-2018 11:20:48 | Build CATS-PYC267-JOB1-14 completed. |
| 30-Nov-2018 11:20:48 | Running on server: post build plugin 'NCover Results Collector' |
| 30-Nov-2018 11:20:48 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 30-Nov-2018 11:20:48 | Running on server: post build plugin 'Clover Delta Calculator' |
| 30-Nov-2018 11:20:49 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 30-Nov-2018 11:20:49 | All post build plugins have finished |
| 30-Nov-2018 11:20:49 | Generating build results summary... |
| 30-Nov-2018 11:20:49 | Saving build results to disk... |
| 30-Nov-2018 11:20:49 | Logging substituted variables... |
| 30-Nov-2018 11:20:49 | Indexing build results... |
| 30-Nov-2018 11:20:49 | Finished building CATS-PYC267-JOB1-14. |