Next Generation of pyClowder
Build: #1 failed
Job: Default Job failed
Build log
The build generated 122 lines of output. Download or view full build log.
| 23-Jul-2018 16:15:20 | Build Clowder - pyclowder2 - boxhack - Default Job #1 (CATS-PYC280-JOB1-1) started building on agent buildserver-3.os.ncsa.edu |
| 23-Jul-2018 16:15:20 | Remote agent on host buildserver-3.os.ncsa.edu |
| 23-Jul-2018 16:15:20 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1 |
| 23-Jul-2018 16:15:20 | Executing build Clowder - pyclowder2 - boxhack - Default Job #1 (CATS-PYC280-JOB1-1) |
| 23-Jul-2018 16:15:20 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 23-Jul-2018 16:15:20 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1 |
| 23-Jul-2018 16:15:20 | Updating source code to revision: e0c65f933fdc8177d8ca154223527a6590eb6d12 |
| 23-Jul-2018 16:15:20 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/.git'. |
| 23-Jul-2018 16:15:20 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/.git/ |
| 23-Jul-2018 16:15:20 | Fetching 'refs/heads/boxhack' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git'. Will try to do a shallow fetch. |
| 23-Jul-2018 16:15:20 | Warning: Permanently added '[127.0.0.1]:38003' (RSA) to the list of known hosts. |
| 23-Jul-2018 16:15:20 | From ssh://127.0.0.1:38003/cats/pyclowder2 |
| 23-Jul-2018 16:15:20 | * [new branch] boxhack -> boxhack |
| 23-Jul-2018 16:15:20 | Checking out revision e0c65f933fdc8177d8ca154223527a6590eb6d12. |
| 23-Jul-2018 16:15:21 | Switched to branch 'boxhack' |
| 23-Jul-2018 16:15:21 | Updated source code to revision: e0c65f933fdc8177d8ca154223527a6590eb6d12 |
| 23-Jul-2018 16:15:21 | Finished task 'Checkout Default Repository' with result: Success |
| 23-Jul-2018 16:15:21 | Running pre-build action: VCS Version Collector |
| 23-Jul-2018 16:15:21 | Starting task 'pytest' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 23-Jul-2018 16:15:21 | Beginning to execute external process for build 'Clowder - pyclowder2 - boxhack - Default Job #1 (CATS-PYC280-JOB1-1)' ... running command line: /home/bamboo/bamboo-agent-home/temp/CATS-PYC280-JOB1-1-ScriptBuildTask-4525019491942288737.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=boxhack bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=boxhack bamboo_repository_revision_number=e0c65f933fdc8177d8ca154223527a6590eb6d12 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC280-JOB1-1 bamboo_repository_162758672_git_branch=boxhack bamboo_repository_162758672_git_username= bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC280-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=boxhack bamboo_planRepository_name=pyclowder2 bamboo_buildNumber=1 bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC280-JOB1-1 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=143032321 bamboo_planName=Clowder - pyclowder2 - boxhack bamboo_shortPlanKey=PYC280 bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=e0c65f933fdc8177d8ca154223527a6590eb6d12 bamboo_repository_162758672_name=pyclowder2 bamboo_buildTimeStamp=2018-07-23T16:15:20.502-05:00 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_repository_git_branch=boxhack bamboo_buildResultKey=CATS-PYC280-JOB1-1 bamboo_repository_branch_name=boxhack bamboo_repository_162758672_revision_number=e0c65f933fdc8177d8ca154223527a6590eb6d12 bamboo_buildPlanName=Clowder - pyclowder2 - boxhack - Default Job bamboo_planRepository_1_revision=e0c65f933fdc8177d8ca154223527a6590eb6d12 bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=pyclowder2 bamboo_repository_162758672_branch_name=boxhack bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=boxhack bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=boxhack bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=boxhack bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_repository_162758672_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-162562079 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1 bamboo_planKey=CATS-PYC280 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=boxhack |
| 23-Jul-2018 16:15:21 | New python executable in /tmp/virtualenv/pyclowder2/bin/python2 |
| 23-Jul-2018 16:15:21 | Also creating executable in /tmp/virtualenv/pyclowder2/bin/python |
| 23-Jul-2018 16:15:23 | Installing setuptools, pkg_resources, pip, wheel...done. |
| 23-Jul-2018 16:15:23 | Running virtualenv with interpreter /usr/bin/python2 |
| 23-Jul-2018 16:15:24 | Collecting enum34==1.1.6 (from -r requirements.txt (line 1)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting pika==0.11.2 (from -r requirements.txt (line 2)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting PyYAML==3.12 (from -r requirements.txt (line 3)) |
| 23-Jul-2018 16:15:24 | Collecting requests==2.18.4 (from -r requirements.txt (line 4)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting wheel==0.24.0 (from -r requirements.txt (line 5)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/e8/14/eaaac12b0432c984a27ad0050a5a0bedc6135df35a0f5f1f35228faf12d4/wheel-0.24.0-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting urllib3==1.22 (from -r requirements.txt (line 6)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting pytest==3.0.3 (from -r requirements.txt (line 7)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/a4/e9/bf75a9a91c4a545bad262937d1defa90d95ac912118a706406e21aef889a/pytest-3.0.3-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting pytest-pep8==1.0.6 (from -r requirements.txt (line 8)) |
| 23-Jul-2018 16:15:24 | Collecting certifi>=2017.4.17 (from requests==2.18.4->-r requirements.txt (line 4)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4->-r requirements.txt (line 4)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting idna<2.7,>=2.5 (from requests==2.18.4->-r requirements.txt (line 4)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting py>=1.4.29 (from pytest==3.0.3->-r requirements.txt (line 7)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/f3/bd/83369ff2dee18f22f27d16b78dd651e8939825af5f8b0b83c38729069962/py-1.5.4-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting pep8>=1.3 (from pytest-pep8==1.0.6->-r requirements.txt (line 8)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/42/3f/669429ce58de2c22d8d2c542752e137ec4b9885fff398d3eceb1a7f5acb4/pep8-1.7.1-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting pytest-cache (from pytest-pep8==1.0.6->-r requirements.txt (line 8)) |
| 23-Jul-2018 16:15:24 | Collecting execnet>=1.1.dev1 (from pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/f9/76/3343e69a2a1602052f587898934e5fea395d22310d39c07955596597227c/execnet-1.5.0-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:24 | Collecting apipkg>=1.4 (from execnet>=1.1.dev1->pytest-cache->pytest-pep8==1.0.6->-r requirements.txt (line 8)) |
| 23-Jul-2018 16:15:24 | Using cached https://files.pythonhosted.org/packages/67/08/4815a09603fc800209431bec5b8bd2acf2f95abdfb558a44a42507fb94da/apipkg-1.5-py2.py3-none-any.whl |
| 23-Jul-2018 16:15:25 | Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, wheel, py, pytest, pep8, apipkg, execnet, pytest-cache, pytest-pep8 |
| 23-Jul-2018 16:15:25 | Found existing installation: wheel 0.31.1 |
| 23-Jul-2018 16:15:25 | Uninstalling wheel-0.31.1: |
| 23-Jul-2018 16:15:25 | Successfully uninstalled wheel-0.31.1 |
| 23-Jul-2018 16:15:25 | Successfully installed PyYAML-3.12 apipkg-1.5 certifi-2018.4.16 chardet-3.0.4 enum34-1.1.6 execnet-1.5.0 idna-2.6 pep8-1.7.1 pika-0.11.2 py-1.5.4 pytest-3.0.3 pytest-cache-1.0 pytest-pep8-1.0.6 requests-2.18.4 urllib3-1.22 wheel-0.24.0 |
| 23-Jul-2018 16:15:26 | ============================= test session starts ============================== |
| 23-Jul-2018 16:15:26 | platform linux2 -- Python 2.7.12, pytest-3.0.3, py-1.5.4, pluggy-0.4.0 |
| 23-Jul-2018 16:15:26 | rootdir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1, inifile: setup.cfg |
| 23-Jul-2018 16:15:26 | plugins: pep8-1.0.6 |
| 23-Jul-2018 16:15:26 | collected 16 items |
| 23-Jul-2018 16:15:26 | |
| 23-Jul-2018 16:15:26 | setup.py . |
| 23-Jul-2018 16:15:26 | docs/source/conf.py . |
| 23-Jul-2018 16:15:26 | pyclowder/__init__.py . |
| 23-Jul-2018 16:15:26 | pyclowder/client.py . |
| 23-Jul-2018 16:15:26 | pyclowder/collections.py . |
| 23-Jul-2018 16:15:26 | pyclowder/connectors.py . |
| 23-Jul-2018 16:15:26 | pyclowder/datasets.py . |
| 23-Jul-2018 16:15:26 | pyclowder/extractors.py . |
| 23-Jul-2018 16:15:26 | pyclowder/files.py F |
| 23-Jul-2018 16:15:26 | pyclowder/geostreams.py . |
| 23-Jul-2018 16:15:26 | pyclowder/sections.py . |
| 23-Jul-2018 16:15:26 | pyclowder/utils.py . |
| 23-Jul-2018 16:15:26 | sample-extractors/binary-preview/binary_extractor.py . |
| 23-Jul-2018 16:15:26 | sample-extractors/echo/echo.py . |
| 23-Jul-2018 16:15:26 | sample-extractors/wordcount/wordcount.py . |
| 23-Jul-2018 16:15:26 | tests/clientTest.py . |
| 23-Jul-2018 16:15:26 | |
| 23-Jul-2018 16:15:26 | generated xml file: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/test-reports/results.xml |
| 23-Jul-2018 16:15:26 | =================================== FAILURES =================================== |
| 23-Jul-2018 16:15:26 | __________________________________ PEP8-check __________________________________ |
| 23-Jul-2018 16:15:26 | /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/pyclowder/files.py:207:1: E302 expected 2 blank lines, found 1 |
| 23-Jul-2018 16:15:26 | def upload_metadata(connector, host, metadataTemplate, key, fileid, metadata): |
| 23-Jul-2018 16:15:26 | ^ |
| 23-Jul-2018 16:15:26 | /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/pyclowder/files.py:214:26: E231 missing whitespace after ',' |
| 23-Jul-2018 16:15:26 | r = requests.post(url,data=data,headers=headers) |
| 23-Jul-2018 16:15:26 | ^ |
| 23-Jul-2018 16:15:26 | /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/pyclowder/files.py:214:36: E231 missing whitespace after ',' |
| 23-Jul-2018 16:15:26 | r = requests.post(url,data=data,headers=headers) |
| 23-Jul-2018 16:15:26 | ^ |
| 23-Jul-2018 16:15:26 | /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1/pyclowder/files.py:224:1: E302 expected 2 blank lines, found 1 |
| 23-Jul-2018 16:15:26 | def upload_preview(connector, host, key, fileid, previewfile, previewmetadata, preview_mimetype=None): |
| 23-Jul-2018 16:15:26 | ^ |
| 23-Jul-2018 16:15:26 | |
| 23-Jul-2018 16:15:26 | ===================== 1 failed, 15 passed in 0.34 seconds ====================== |
| 23-Jul-2018 16:15:26 | Failing task since return code of [/home/bamboo/bamboo-agent-home/temp/CATS-PYC280-JOB1-1-ScriptBuildTask-4525019491942288737.sh] was 1 while expected 0 |
| 23-Jul-2018 16:15:26 | Finished task 'pytest' with result: Failed |
| 23-Jul-2018 16:15:26 | Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' |
| 23-Jul-2018 16:15:26 | Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC280-JOB1... |
| 23-Jul-2018 16:15:26 | Failing task since 1 failing test cases were found. |
| 23-Jul-2018 16:15:26 | Finished task 'test results' with result: Failed |
| 23-Jul-2018 16:15:26 | Running post build plugin 'Docker Container Cleanup' |
| 23-Jul-2018 16:15:26 | Running post build plugin 'NCover Results Collector' |
| 23-Jul-2018 16:15:26 | Running post build plugin 'Clover Results Collector' |
| 23-Jul-2018 16:15:26 | Running post build plugin 'npm Cache Cleanup' |
| 23-Jul-2018 16:15:26 | Running post build plugin 'Artifact Copier' |
| 23-Jul-2018 16:15:26 | Finalising the build... |
| 23-Jul-2018 16:15:26 | Stopping timer. |
| 23-Jul-2018 16:15:26 | Build CATS-PYC280-JOB1-1 completed. |
| 23-Jul-2018 16:15:26 | Running on server: post build plugin 'NCover Results Collector' |
| 23-Jul-2018 16:15:26 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 23-Jul-2018 16:15:26 | Running on server: post build plugin 'Clover Delta Calculator' |
| 23-Jul-2018 16:15:26 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 23-Jul-2018 16:15:26 | All post build plugins have finished |
| 23-Jul-2018 16:15:26 | Generating build results summary... |
| 23-Jul-2018 16:15:26 | Saving build results to disk... |
| 23-Jul-2018 16:15:26 | Logging substituted variables... |
| 23-Jul-2018 16:15:27 | Indexing build results... |
| 23-Jul-2018 16:15:27 | Finished building CATS-PYC280-JOB1-1. |