Build: #1 was successful
Job: Default Job was successful
Build log
The build generated 2,396 lines of output. The output is too long and has been truncated to the last 1,000 lines. Download or view full build log.
| 29-May-2019 17:28:29 | Unpacking libpcre16-3:amd64 (2:8.38-3.1) ... |
| 29-May-2019 17:28:30 | Selecting previously unselected package libpcre32-3:amd64. |
| 29-May-2019 17:28:30 | Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... |
| 29-May-2019 17:28:30 | Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... |
| 29-May-2019 17:28:30 | Selecting previously unselected package libpcre3-dev:amd64. |
| 29-May-2019 17:28:30 | Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... |
| 29-May-2019 17:28:30 | Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... |
| 29-May-2019 17:28:31 | Selecting previously unselected package zlib1g-dev:amd64. |
| 29-May-2019 17:28:31 | Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.1_amd64.deb ... |
| 29-May-2019 17:28:31 | Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
| 29-May-2019 17:28:31 | Selecting previously unselected package libpng12-dev:amd64. |
| 29-May-2019 17:28:31 | Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1.1_amd64.deb ... |
| 29-May-2019 17:28:31 | Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
| 29-May-2019 17:28:32 | Selecting previously unselected package libreadline6-dev:amd64. |
| 29-May-2019 17:28:32 | Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... |
| 29-May-2019 17:28:32 | Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... |
| 29-May-2019 17:28:33 | Selecting previously unselected package libreadline-dev:amd64. |
| 29-May-2019 17:28:33 | Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... |
| 29-May-2019 17:28:33 | Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... |
| 29-May-2019 17:28:33 | Selecting previously unselected package libtcl8.6:amd64. |
| 29-May-2019 17:28:33 | Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ... |
| 29-May-2019 17:28:33 | Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ... |
| 29-May-2019 17:28:34 | Selecting previously unselected package libtiff5:amd64. |
| 29-May-2019 17:28:34 | Preparing to unpack .../libtiff5_4.0.6-1ubuntu0.6_amd64.deb ... |
| 29-May-2019 17:28:34 | Unpacking libtiff5:amd64 (4.0.6-1ubuntu0.6) ... |
| 29-May-2019 17:28:34 | Selecting previously unselected package libtk8.6:amd64. |
| 29-May-2019 17:28:34 | Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ... |
| 29-May-2019 17:28:35 | Unpacking libtk8.6:amd64 (8.6.5-1) ... |
| 29-May-2019 17:28:35 | Selecting previously unselected package libxt6:amd64. |
| 29-May-2019 17:28:35 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
| 29-May-2019 17:28:35 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 29-May-2019 17:28:35 | Selecting previously unselected package pkg-config. |
| 29-May-2019 17:28:35 | Preparing to unpack .../pkg-config_0.29.1-0ubuntu1_amd64.deb ... |
| 29-May-2019 17:28:36 | Unpacking pkg-config (0.29.1-0ubuntu1) ... |
| 29-May-2019 17:28:36 | Selecting previously unselected package zip. |
| 29-May-2019 17:28:36 | Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... |
| 29-May-2019 17:28:36 | Unpacking zip (3.0-11) ... |
| 29-May-2019 17:28:36 | Selecting previously unselected package unzip. |
| 29-May-2019 17:28:36 | Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ... |
| 29-May-2019 17:28:36 | Unpacking unzip (6.0-20ubuntu1) ... |
| 29-May-2019 17:28:37 | Selecting previously unselected package xdg-utils. |
| 29-May-2019 17:28:37 | Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.3_all.deb ... |
| 29-May-2019 17:28:37 | Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
| 29-May-2019 17:28:38 | Selecting previously unselected package r-base-core. |
| 29-May-2019 17:28:38 | Preparing to unpack .../r-base-core_3.4.4-1xenial0_amd64.deb ... |
| 29-May-2019 17:28:38 | Unpacking r-base-core (3.4.4-1xenial0) ... |
| 29-May-2019 17:28:41 | Selecting previously unselected package liblzma-dev:amd64. |
| 29-May-2019 17:28:41 | Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... |
| 29-May-2019 17:28:41 | Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
| 29-May-2019 17:28:41 | Selecting previously unselected package r-base-dev. |
| 29-May-2019 17:28:41 | Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... |
| 29-May-2019 17:28:41 | Unpacking r-base-dev (3.4.4-1xenial0) ... |
| 29-May-2019 17:28:42 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 29-May-2019 17:28:42 | Processing triggers for mime-support (3.59ubuntu1) ... |
| 29-May-2019 17:28:42 | Processing triggers for systemd (229-4ubuntu21.21) ... |
| 29-May-2019 17:28:42 | Setting up libgdbm3:amd64 (1.8.3-13.1) ... |
| 29-May-2019 17:28:42 | Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... |
| 29-May-2019 17:28:42 | No schema files found: doing nothing. |
| 29-May-2019 17:28:42 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
| 29-May-2019 17:28:43 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
| 29-May-2019 17:28:43 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
| 29-May-2019 17:28:43 | Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... |
| 29-May-2019 17:28:43 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
| 29-May-2019 17:28:43 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
| 29-May-2019 17:28:43 | Setting up groff-base (1.22.3-7) ... |
| 29-May-2019 17:28:43 | Setting up bsdmainutils (9.0.6ubuntu3) ... |
| 29-May-2019 17:28:44 | update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode |
| 29-May-2019 17:28:44 | update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode |
| 29-May-2019 17:28:44 | Setting up libpipeline1:amd64 (1.4.1-2) ... |
| 29-May-2019 17:28:44 | Setting up man-db (2.7.5-1) ... |
| 29-May-2019 17:28:44 | debconf: unable to initialize frontend: Dialog |
| 29-May-2019 17:28:44 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 29-May-2019 17:28:44 | debconf: falling back to frontend: Readline |
| 29-May-2019 17:28:44 | Building database of manual pages ... |
| 29-May-2019 17:28:54 | Setting up fonts-dejavu-core (2.35-1) ... |
| 29-May-2019 17:28:55 | Setting up ucf (3.0036) ... |
| 29-May-2019 17:28:55 | debconf: unable to initialize frontend: Dialog |
| 29-May-2019 17:28:55 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 29-May-2019 17:28:55 | debconf: falling back to frontend: Readline |
| 29-May-2019 17:28:55 | Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... |
| 29-May-2019 17:28:58 | Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... |
| 29-May-2019 17:28:58 | Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... |
| 29-May-2019 17:28:59 | Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... |
| 29-May-2019 17:28:59 | Setting up fontconfig (2.11.94-0ubuntu1.1) ... |
| 29-May-2019 17:29:01 | Regenerating fonts cache... done. |
| 29-May-2019 17:29:01 | Setting up x11-common (1:7.7+13ubuntu3.1) ... |
| 29-May-2019 17:29:02 | debconf: unable to initialize frontend: Dialog |
| 29-May-2019 17:29:02 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 29-May-2019 17:29:02 | debconf: falling back to frontend: Readline |
| 29-May-2019 17:29:02 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
| 29-May-2019 17:29:02 | invoke-rc.d: could not determine current runlevel |
| 29-May-2019 17:29:02 | invoke-rc.d: policy-rc.d denied execution of start. |
| 29-May-2019 17:29:02 | Setting up libice6:amd64 (2:1.0.9-1) ... |
| 29-May-2019 17:29:02 | Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... |
| 29-May-2019 17:29:02 | Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... |
| 29-May-2019 17:29:03 | Setting up libsigsegv2:amd64 (2.10-4) ... |
| 29-May-2019 17:29:03 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
| 29-May-2019 17:29:03 | Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... |
| 29-May-2019 17:29:04 | Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... |
| 29-May-2019 17:29:04 | Setting up libxft2:amd64 (2.3.2-1) ... |
| 29-May-2019 17:29:05 | Setting up libxss1:amd64 (1:1.2.2-1) ... |
| 29-May-2019 17:29:05 | Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... |
| 29-May-2019 17:29:05 | Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... |
| 29-May-2019 17:29:05 | Setting up perl (5.22.1-9ubuntu0.6) ... |
| 29-May-2019 17:29:06 | update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode |
| 29-May-2019 17:29:06 | Setting up libjbig0:amd64 (2.1-3.1) ... |
| 29-May-2019 17:29:06 | Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... |
| 29-May-2019 17:29:06 | Setting up libmpfr4:amd64 (3.1.4-1) ... |
| 29-May-2019 17:29:06 | Setting up libmpc3:amd64 (1.0.3-1) ... |
| 29-May-2019 17:29:06 | Setting up tzdata (2019a-0ubuntu0.16.04) ... |
| 29-May-2019 17:29:07 | debconf: unable to initialize frontend: Dialog |
| 29-May-2019 17:29:07 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 29-May-2019 17:29:07 | debconf: falling back to frontend: Readline |
| 29-May-2019 17:29:07 | |
| 29-May-2019 17:29:07 | Current default time zone: 'Etc/UTC' |
| 29-May-2019 17:29:07 | Local time is now: Wed May 29 22:29:07 UTC 2019. |
| 29-May-2019 17:29:07 | Universal Time is now: Wed May 29 22:29:07 UTC 2019. |
| 29-May-2019 17:29:07 | Run 'dpkg-reconfigure tzdata' if you wish to change it. |
| 29-May-2019 17:29:07 | |
| 29-May-2019 17:29:07 | Setting up bzip2 (1.0.6-8) ... |
| 29-May-2019 17:29:07 | Setting up libmagic1:amd64 (1:5.25-2ubuntu1.2) ... |
| 29-May-2019 17:29:08 | Setting up file (1:5.25-2ubuntu1.2) ... |
| 29-May-2019 17:29:08 | Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... |
| 29-May-2019 17:29:08 | Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... |
| 29-May-2019 17:29:08 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
| 29-May-2019 17:29:09 | Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... |
| 29-May-2019 17:29:09 | Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... |
| 29-May-2019 17:29:09 | Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... |
| 29-May-2019 17:29:09 | Setting up netbase (5.3) ... |
| 29-May-2019 17:29:09 | Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... |
| 29-May-2019 17:29:10 | Setting up gettext-base (0.19.7-2ubuntu3.1) ... |
| 29-May-2019 17:29:10 | Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:10 | Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:10 | Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 29-May-2019 17:29:10 | Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 29-May-2019 17:29:10 | Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... |
| 29-May-2019 17:29:10 | Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 29-May-2019 17:29:11 | Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
| 29-May-2019 17:29:11 | Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:11 | Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:11 | Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:12 | Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:12 | Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:12 | Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:13 | Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:13 | Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... |
| 29-May-2019 17:29:13 | Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... |
| 29-May-2019 17:29:13 | Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... |
| 29-May-2019 17:29:13 | Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.5) ... |
| 29-May-2019 17:29:14 | Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... |
| 29-May-2019 17:29:14 | Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... |
| 29-May-2019 17:29:14 | Setting up libxmuu1:amd64 (2:1.1.2-2) ... |
| 29-May-2019 17:29:14 | Setting up xauth (1:1.0.9-1ubuntu2) ... |
| 29-May-2019 17:29:14 | Setting up m4 (1.4.17-5) ... |
| 29-May-2019 17:29:14 | Setting up autoconf (2.69-9) ... |
| 29-May-2019 17:29:15 | Setting up autotools-dev (20150820.1) ... |
| 29-May-2019 17:29:15 | Setting up automake (1:1.15-4ubuntu1) ... |
| 29-May-2019 17:29:15 | update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode |
| 29-May-2019 17:29:15 | Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... |
| 29-May-2019 17:29:15 | Setting up libc-dev-bin (2.23-0ubuntu11) ... |
| 29-May-2019 17:29:15 | Setting up linux-libc-dev:amd64 (4.4.0-148.174) ... |
| 29-May-2019 17:29:15 | Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... |
| 29-May-2019 17:29:16 | Setting up libisl15:amd64 (0.16.1-1) ... |
| 29-May-2019 17:29:16 | Setting up cpp-5 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:16 | Setting up cpp (4:5.3.1-1ubuntu1) ... |
| 29-May-2019 17:29:16 | Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:16 | Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:16 | Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:16 | Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:17 | Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:17 | Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:17 | Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:17 | Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:17 | Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:18 | Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:18 | Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:18 | Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:19 | Setting up gcc-5 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:19 | Setting up gcc (4:5.3.1-1ubuntu1) ... |
| 29-May-2019 17:29:19 | Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:19 | Setting up g++-5 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:19 | Setting up g++ (4:5.3.1-1ubuntu1) ... |
| 29-May-2019 17:29:20 | update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode |
| 29-May-2019 17:29:20 | Setting up make (4.1-6) ... |
| 29-May-2019 17:29:20 | Setting up libdpkg-perl (1.18.4ubuntu1.5) ... |
| 29-May-2019 17:29:20 | Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... |
| 29-May-2019 17:29:20 | update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode |
| 29-May-2019 17:29:20 | Setting up patch (2.7.5-1ubuntu0.16.04.1) ... |
| 29-May-2019 17:29:20 | Setting up dpkg-dev (1.18.4ubuntu1.5) ... |
| 29-May-2019 17:29:20 | Setting up build-essential (12.1ubuntu2) ... |
| 29-May-2019 17:29:20 | Setting up libcroco3:amd64 (0.6.11-1) ... |
| 29-May-2019 17:29:21 | Setting up gettext (0.19.7-2ubuntu3.1) ... |
| 29-May-2019 17:29:21 | Setting up intltool-debian (0.35.0+20060710.4) ... |
| 29-May-2019 17:29:21 | Setting up po-debconf (1.0.19) ... |
| 29-May-2019 17:29:21 | Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... |
| 29-May-2019 17:29:21 | Setting up libfile-stripnondeterminism-perl (0.015-1) ... |
| 29-May-2019 17:29:22 | Setting up libtimedate-perl (2.3000-2) ... |
| 29-May-2019 17:29:22 | Setting up liburi-perl (1.71-1) ... |
| 29-May-2019 17:29:23 | Setting up libencode-locale-perl (1.05-1) ... |
| 29-May-2019 17:29:23 | Setting up libhttp-date-perl (6.02-1) ... |
| 29-May-2019 17:29:23 | Setting up libfile-listing-perl (6.04-1) ... |
| 29-May-2019 17:29:23 | Setting up libhtml-tagset-perl (3.20-2) ... |
| 29-May-2019 17:29:23 | Setting up libhtml-parser-perl (3.72-1) ... |
| 29-May-2019 17:29:23 | Setting up libhtml-tree-perl (5.03-2) ... |
| 29-May-2019 17:29:24 | Setting up libio-html-perl (1.001-1) ... |
| 29-May-2019 17:29:24 | Setting up liblwp-mediatypes-perl (6.02-1) ... |
| 29-May-2019 17:29:24 | Setting up libhttp-message-perl (6.11-1) ... |
| 29-May-2019 17:29:24 | Setting up libhttp-cookies-perl (6.01-1) ... |
| 29-May-2019 17:29:24 | Setting up libhttp-negotiate-perl (6.00-2) ... |
| 29-May-2019 17:29:24 | Setting up libnet-ssleay-perl (1.72-1build1) ... |
| 29-May-2019 17:29:24 | Setting up libio-socket-ssl-perl (2.024-1) ... |
| 29-May-2019 17:29:25 | Setting up libnet-http-perl (6.09-1) ... |
| 29-May-2019 17:29:25 | Setting up libwww-robotrules-perl (6.01-1) ... |
| 29-May-2019 17:29:25 | Setting up python-six (1.10.0-3) ... |
| 29-May-2019 17:29:26 | Setting up python-pkg-resources (20.7.0-1) ... |
| 29-May-2019 17:29:27 | Setting up python-scour (0.32-1) ... |
| 29-May-2019 17:29:28 | Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:29 | Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:29 | Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.11) ... |
| 29-May-2019 17:29:29 | Setting up gfortran (4:5.3.1-1ubuntu1) ... |
| 29-May-2019 17:29:29 | update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode |
| 29-May-2019 17:29:29 | update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode |
| 29-May-2019 17:29:29 | Setting up icu-devtools (55.1-7ubuntu0.4) ... |
| 29-May-2019 17:29:29 | Setting up libblas-common (3.6.0-2ubuntu2) ... |
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| 29-May-2019 17:29:29 | update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode |
| 29-May-2019 17:29:30 | Setting up libblas-dev (3.6.0-2ubuntu2) ... |
| 29-May-2019 17:29:30 | update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode |
| 29-May-2019 17:29:30 | Setting up libbz2-dev:amd64 (1.0.6-8) ... |
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| 29-May-2019 17:29:32 | Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... |
| 29-May-2019 17:29:32 | Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... |
| 29-May-2019 17:29:32 | Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.1) ... |
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| 29-May-2019 17:29:33 | Setting up liblapack3 (3.6.0-2ubuntu2) ... |
| 29-May-2019 17:29:33 | update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode |
| 29-May-2019 17:29:33 | Setting up liblapack-dev (3.6.0-2ubuntu2) ... |
| 29-May-2019 17:29:33 | update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode |
| 29-May-2019 17:29:33 | Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... |
| 29-May-2019 17:29:33 | Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... |
| 29-May-2019 17:29:34 | Setting up libthai-data (0.1.24-2) ... |
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| 29-May-2019 17:29:34 | Setting up libpango-1.0-0:amd64 (1.38.1-1) ... |
| 29-May-2019 17:29:35 | Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... |
| 29-May-2019 17:29:35 | Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... |
| 29-May-2019 17:29:36 | Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... |
| 29-May-2019 17:29:36 | debconf: unable to initialize frontend: Dialog |
| 29-May-2019 17:29:36 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 29-May-2019 17:29:36 | debconf: falling back to frontend: Readline |
| 29-May-2019 17:29:36 | |
| 29-May-2019 17:29:36 | Creating config file /etc/papersize with new version |
| 29-May-2019 17:29:36 | Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... |
| 29-May-2019 17:29:36 | Setting up libpcre16-3:amd64 (2:8.38-3.1) ... |
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| 29-May-2019 17:29:37 | Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... |
| 29-May-2019 17:29:37 | Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
| 29-May-2019 17:29:37 | Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
| 29-May-2019 17:29:38 | Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... |
| 29-May-2019 17:29:38 | Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... |
| 29-May-2019 17:29:38 | Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... |
| 29-May-2019 17:29:38 | Setting up libtiff5:amd64 (4.0.6-1ubuntu0.6) ... |
| 29-May-2019 17:29:38 | Setting up libtk8.6:amd64 (8.6.5-1) ... |
| 29-May-2019 17:29:39 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
| 29-May-2019 17:29:39 | Setting up pkg-config (0.29.1-0ubuntu1) ... |
| 29-May-2019 17:29:39 | Setting up zip (3.0-11) ... |
| 29-May-2019 17:29:39 | Setting up unzip (6.0-20ubuntu1) ... |
| 29-May-2019 17:29:39 | Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
| 29-May-2019 17:29:39 | Setting up r-base-core (3.4.4-1xenial0) ... |
| 29-May-2019 17:29:40 | debconf: unable to initialize frontend: Dialog |
| 29-May-2019 17:29:40 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 29-May-2019 17:29:40 | debconf: falling back to frontend: Readline |
| 29-May-2019 17:29:40 | |
| 29-May-2019 17:29:40 | Creating config file /etc/R/Renviron with new version |
| 29-May-2019 17:29:40 | Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
| 29-May-2019 17:29:40 | Setting up debhelper (9.20160115ubuntu3) ... |
| 29-May-2019 17:29:40 | Setting up libwww-perl (6.15-1) ... |
| 29-May-2019 17:29:40 | Setting up libxml-parser-perl (2.44-1build1) ... |
| 29-May-2019 17:29:41 | Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... |
| 29-May-2019 17:29:41 | Setting up dh-translations (129) ... |
| 29-May-2019 17:29:41 | Setting up cdbs (0.4.130ubuntu2) ... |
| 29-May-2019 17:29:41 | Setting up r-base-dev (3.4.4-1xenial0) ... |
| 29-May-2019 17:29:41 | Setting up dh-strip-nondeterminism (0.015-1) ... |
| 29-May-2019 17:29:41 | Setting up liblwp-protocol-https-perl (6.06-2) ... |
| 29-May-2019 17:29:41 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 29-May-2019 17:29:41 | Processing triggers for systemd (229-4ubuntu21.21) ... |
| 29-May-2019 17:29:42 | Installing package into '/usr/local/lib/R/site-library' |
| 29-May-2019 17:29:42 | (as 'lib' is unspecified) |
| 29-May-2019 17:29:43 | trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' |
| 29-May-2019 17:29:43 | Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) |
| 29-May-2019 17:29:43 | ================================================== |
| 29-May-2019 17:29:43 | downloaded 1.0 MB |
| 29-May-2019 17:29:43 | |
| 29-May-2019 17:29:44 | * installing *source* package 'jsonlite' ... |
| 29-May-2019 17:29:44 | ** package 'jsonlite' successfully unpacked and MD5 sums checked |
| 29-May-2019 17:29:44 | ** libs |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o |
| 29-May-2019 17:29:44 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o |
| 29-May-2019 17:29:45 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o |
| 29-May-2019 17:29:46 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o |
| 29-May-2019 17:29:46 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o |
| 29-May-2019 17:29:46 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o |
| 29-May-2019 17:29:46 | ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o |
| 29-May-2019 17:29:46 | g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR |
| 29-May-2019 17:29:46 | installing to /usr/local/lib/R/site-library/jsonlite/libs |
| 29-May-2019 17:29:46 | ** R |
| 29-May-2019 17:29:46 | ** inst |
| 29-May-2019 17:29:46 | ** preparing package for lazy loading |
| 29-May-2019 17:29:46 | ** help |
| 29-May-2019 17:29:46 | *** installing help indices |
| 29-May-2019 17:29:46 | ** building package indices |
| 29-May-2019 17:29:46 | ** installing vignettes |
| 29-May-2019 17:29:46 | ** testing if installed package can be loaded |
| 29-May-2019 17:29:47 | * DONE (jsonlite) |
| 29-May-2019 17:29:47 | |
| 29-May-2019 17:29:47 | The downloaded source packages are in |
| 29-May-2019 17:29:47 | '/tmp/Rtmp7KRhsJ/downloaded_packages' |
| 29-May-2019 17:29:47 | [1] "/usr/local/lib/R/site-library/jsonlite" |
| 29-May-2019 17:29:54 | Removing intermediate container d47bd6d0ee90 |
| 29-May-2019 17:29:54 | ---> cf5e2bc61fd1 |
| 29-May-2019 17:29:54 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 29-May-2019 17:29:54 | ---> 512cd4ea6cf9 |
| 29-May-2019 17:29:54 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:29:55 | ---> Running in 2fca8994e0fe |
| 29-May-2019 17:29:55 | Removing intermediate container 2fca8994e0fe |
| 29-May-2019 17:29:55 | ---> e6a5122476b7 |
| 29-May-2019 17:29:55 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:29:56 | ---> Running in 453693d7e94a |
| 29-May-2019 17:29:56 | Removing intermediate container 453693d7e94a |
| 29-May-2019 17:29:56 | ---> 57d4ecd2ece8 |
| 29-May-2019 17:29:56 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 29-May-2019 17:29:56 | ---> Running in c2f2cd18320e |
| 29-May-2019 17:29:56 | Removing intermediate container c2f2cd18320e |
| 29-May-2019 17:29:56 | ---> 0093175ec398 |
| 29-May-2019 17:29:56 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 29-May-2019 17:29:57 | ---> Running in 33c3e6ce404d |
| 29-May-2019 17:29:57 | Removing intermediate container 33c3e6ce404d |
| 29-May-2019 17:29:57 | ---> 6948bcf00b65 |
| 29-May-2019 17:29:57 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:29:57 | ---> Running in 94ed3a74b0f0 |
| 29-May-2019 17:29:58 | Removing intermediate container 94ed3a74b0f0 |
| 29-May-2019 17:29:58 | ---> 15467194ccc7 |
| 29-May-2019 17:29:58 | Step 10/10 : CMD python r_extractor.py |
| 29-May-2019 17:29:58 | ---> Running in c4d342073628 |
| 29-May-2019 17:29:58 | Removing intermediate container c4d342073628 |
| 29-May-2019 17:29:58 | ---> a71be7564f05 |
| 29-May-2019 17:29:58 | Successfully built a71be7564f05 |
| 29-May-2019 17:29:58 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
| 29-May-2019 17:29:58 | Sending build context to Docker daemon 281.1kB |
| 29-May-2019 17:29:58 | |
| 29-May-2019 17:29:58 | Step 1/9 : FROM ubuntu:16.04 |
| 29-May-2019 17:29:58 | ---> 2a697363a870 |
| 29-May-2019 17:29:58 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> ba0d71a8bfaa |
| 29-May-2019 17:29:58 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> 43d663ee6c15 |
| 29-May-2019 17:29:58 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> 7ad7cb1f5f41 |
| 29-May-2019 17:29:58 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> 4b2f196a4559 |
| 29-May-2019 17:29:58 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> 68bcbd949882 |
| 29-May-2019 17:29:58 | Step 7/9 : WORKDIR /home/clowder |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> 5a65aca4c9a9 |
| 29-May-2019 17:29:58 | Step 8/9 : COPY notifications.json /home/clowder |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> 35932093ab77 |
| 29-May-2019 17:29:58 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> 463bf7bf328b |
| 29-May-2019 17:29:58 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 29-May-2019 17:29:58 | Successfully built 463bf7bf328b |
| 29-May-2019 17:29:58 | Successfully tagged clowder/pyclowder-python3:latest |
| 29-May-2019 17:29:58 | Sending build context to Docker daemon 279.6kB |
| 29-May-2019 17:29:58 | |
| 29-May-2019 17:29:58 | Step 1/6 : FROM clowder/pyclowder |
| 29-May-2019 17:29:58 | ---> 463bf7bf328b |
| 29-May-2019 17:29:58 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> c8c0448572b7 |
| 29-May-2019 17:29:58 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> 4cd46e6a4eb1 |
| 29-May-2019 17:29:58 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> ce1a6850a03b |
| 29-May-2019 17:29:58 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> b7cb2ee693a3 |
| 29-May-2019 17:29:58 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:29:58 | ---> Using cache |
| 29-May-2019 17:29:58 | ---> a292534dd7f9 |
| 29-May-2019 17:29:58 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 29-May-2019 17:29:58 | Successfully built a292534dd7f9 |
| 29-May-2019 17:29:59 | Successfully tagged clowder/pyclowder-python3:onbuild |
| 29-May-2019 17:29:59 | Sending build context to Docker daemon 6.656kB |
| 29-May-2019 17:29:59 | |
| 29-May-2019 17:29:59 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 29-May-2019 17:29:59 | # Executing 5 build triggers |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 8d58fc9cdb1f |
| 29-May-2019 17:29:59 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> dd2160d53578 |
| 29-May-2019 17:29:59 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 85d91669ddb8 |
| 29-May-2019 17:29:59 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> d81827f1d7b0 |
| 29-May-2019 17:29:59 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> a25dd858525f |
| 29-May-2019 17:29:59 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 60676e60d715 |
| 29-May-2019 17:29:59 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> b2b546d555f3 |
| 29-May-2019 17:29:59 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 46ae2a524eed |
| 29-May-2019 17:29:59 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 1a3694f5dab2 |
| 29-May-2019 17:29:59 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 29-May-2019 17:29:59 | Successfully built 1a3694f5dab2 |
| 29-May-2019 17:29:59 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
| 29-May-2019 17:29:59 | Sending build context to Docker daemon 13.31kB |
| 29-May-2019 17:29:59 | |
| 29-May-2019 17:29:59 | Step 1/10 : FROM clowder/pyclowder:latest |
| 29-May-2019 17:29:59 | ---> 463bf7bf328b |
| 29-May-2019 17:29:59 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> c14736d2932f |
| 29-May-2019 17:29:59 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> cf5e2bc61fd1 |
| 29-May-2019 17:29:59 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 512cd4ea6cf9 |
| 29-May-2019 17:29:59 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> e6a5122476b7 |
| 29-May-2019 17:29:59 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 57d4ecd2ece8 |
| 29-May-2019 17:29:59 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 0093175ec398 |
| 29-May-2019 17:29:59 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 6948bcf00b65 |
| 29-May-2019 17:29:59 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> 15467194ccc7 |
| 29-May-2019 17:29:59 | Step 10/10 : CMD python r_extractor.py |
| 29-May-2019 17:29:59 | ---> Using cache |
| 29-May-2019 17:29:59 | ---> a71be7564f05 |
| 29-May-2019 17:29:59 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 29-May-2019 17:29:59 | Successfully built a71be7564f05 |
| 29-May-2019 17:29:59 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
| 29-May-2019 17:29:59 | Sending build context to Docker daemon 9.216kB |
| 29-May-2019 17:29:59 | |
| 29-May-2019 17:29:59 | Step 1/2 : FROM clowder/pyclowder:onbuild |
| 29-May-2019 17:29:59 | # Executing 5 build triggers |
| 29-May-2019 17:30:00 | ---> Running in d5044a6ea4b3 |
| 29-May-2019 17:30:02 | Removing intermediate container d5044a6ea4b3 |
| 29-May-2019 17:30:02 | ---> Running in bd78781da0ea |
| 29-May-2019 17:30:04 | Removing intermediate container bd78781da0ea |
| 29-May-2019 17:30:05 | ---> ad3666ad7554 |
| 29-May-2019 17:30:05 | Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" |
| 29-May-2019 17:30:05 | ---> Running in e1021d81bffb |
| 29-May-2019 17:30:05 | Removing intermediate container e1021d81bffb |
| 29-May-2019 17:30:05 | ---> f939ff3a357d |
| 29-May-2019 17:30:05 | Successfully built f939ff3a357d |
| 29-May-2019 17:30:05 | Successfully tagged clowder/extractors-wordcount:latest |
| 29-May-2019 17:30:05 | Sending build context to Docker daemon 5.12kB |
| 29-May-2019 17:30:05 | |
| 29-May-2019 17:30:06 | Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild |
| 29-May-2019 17:30:06 | # Executing 5 build triggers |
| 29-May-2019 17:30:06 | ---> Running in 5b790a6486da |
| 29-May-2019 17:30:08 | Removing intermediate container 5b790a6486da |
| 29-May-2019 17:30:09 | ---> Running in b501318c4c9d |
| 29-May-2019 17:30:11 | Removing intermediate container b501318c4c9d |
| 29-May-2019 17:30:11 | ---> 02a01842536e |
| 29-May-2019 17:30:11 | Step 2/3 : ENV EXTRACTION_FUNC="wordcount" |
| 29-May-2019 17:30:11 | ---> Running in 00faaf76d515 |
| 29-May-2019 17:30:12 | Removing intermediate container 00faaf76d515 |
| 29-May-2019 17:30:12 | ---> 4713d01dbb54 |
| 29-May-2019 17:30:12 | Step 3/3 : ENV EXTRACTION_MODULE="wordcount" |
| 29-May-2019 17:30:12 | ---> Running in ceec00509eeb |
| 29-May-2019 17:30:13 | Removing intermediate container ceec00509eeb |
| 29-May-2019 17:30:13 | ---> 22d9e5586973 |
| 29-May-2019 17:30:13 | Successfully built 22d9e5586973 |
| 29-May-2019 17:30:13 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
| 29-May-2019 17:30:13 | Sending build context to Docker daemon 5.12kB |
| 29-May-2019 17:30:13 | |
| 29-May-2019 17:30:13 | Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild |
| 29-May-2019 17:30:13 | # Executing 5 build triggers |
| 29-May-2019 17:30:14 | ---> Running in 9574438304f6 |
| 29-May-2019 17:30:15 | Removing intermediate container 9574438304f6 |
| 29-May-2019 17:30:15 | ---> Running in 1b2768dc689b |
| 29-May-2019 17:30:17 | Removing intermediate container 1b2768dc689b |
| 29-May-2019 17:30:17 | ---> 6b1d2e43c640 |
| 29-May-2019 17:30:17 | Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
| 29-May-2019 17:30:17 | ---> Running in 79d4adf39db8 |
| 29-May-2019 17:30:18 | Removing intermediate container 79d4adf39db8 |
| 29-May-2019 17:30:18 | ---> 2c547350e4c1 |
| 29-May-2019 17:30:18 | Successfully built 2c547350e4c1 |
| 29-May-2019 17:30:18 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
| 29-May-2019 17:30:18 | Sending build context to Docker daemon 8.192kB |
| 29-May-2019 17:30:18 | |
| 29-May-2019 17:30:18 | Step 1/7 : FROM python:3.5 |
| 29-May-2019 17:30:19 | 3.5: Pulling from library/python |
| 29-May-2019 17:30:19 | c5e155d5a1d1: Pulling fs layer |
| 29-May-2019 17:30:19 | 221d80d00ae9: Pulling fs layer |
| 29-May-2019 17:30:19 | 4250b3117dca: Pulling fs layer |
| 29-May-2019 17:30:19 | 3b7ca19181b2: Pulling fs layer |
| 29-May-2019 17:30:19 | 425d7b2a5bcc: Pulling fs layer |
| 29-May-2019 17:30:19 | d7a526a3eca5: Pulling fs layer |
| 29-May-2019 17:30:19 | 03339fb09dd6: Pulling fs layer |
| 29-May-2019 17:30:19 | 3b7ca19181b2: Waiting |
| 29-May-2019 17:30:19 | 425d7b2a5bcc: Waiting |
| 29-May-2019 17:30:19 | d7a526a3eca5: Waiting |
| 29-May-2019 17:30:19 | 594669b0b000: Pulling fs layer |
| 29-May-2019 17:30:19 | 7a79e4a07ea7: Pulling fs layer |
| 29-May-2019 17:30:19 | 03339fb09dd6: Waiting |
| 29-May-2019 17:30:19 | 7a79e4a07ea7: Waiting |
| 29-May-2019 17:30:19 | 594669b0b000: Waiting |
| 29-May-2019 17:30:19 | 4250b3117dca: Verifying Checksum |
| 29-May-2019 17:30:19 | 4250b3117dca: Download complete |
| 29-May-2019 17:30:20 | 221d80d00ae9: Verifying Checksum |
| 29-May-2019 17:30:20 | 221d80d00ae9: Download complete |
| 29-May-2019 17:30:20 | c5e155d5a1d1: Download complete |
| 29-May-2019 17:30:21 | d7a526a3eca5: Verifying Checksum |
| 29-May-2019 17:30:21 | d7a526a3eca5: Download complete |
| 29-May-2019 17:30:21 | 3b7ca19181b2: Verifying Checksum |
| 29-May-2019 17:30:21 | 3b7ca19181b2: Download complete |
| 29-May-2019 17:30:21 | 594669b0b000: Verifying Checksum |
| 29-May-2019 17:30:21 | 594669b0b000: Download complete |
| 29-May-2019 17:30:22 | 03339fb09dd6: Verifying Checksum |
| 29-May-2019 17:30:22 | 03339fb09dd6: Download complete |
| 29-May-2019 17:30:22 | 7a79e4a07ea7: Download complete |
| 29-May-2019 17:30:23 | c5e155d5a1d1: Pull complete |
| 29-May-2019 17:30:24 | 221d80d00ae9: Pull complete |
| 29-May-2019 17:30:24 | 4250b3117dca: Pull complete |
| 29-May-2019 17:30:26 | 425d7b2a5bcc: Verifying Checksum |
| 29-May-2019 17:30:26 | 425d7b2a5bcc: Download complete |
| 29-May-2019 17:30:27 | 3b7ca19181b2: Pull complete |
| 29-May-2019 17:30:38 | 425d7b2a5bcc: Pull complete |
| 29-May-2019 17:30:39 | d7a526a3eca5: Pull complete |
| 29-May-2019 17:30:40 | 03339fb09dd6: Pull complete |
| 29-May-2019 17:30:40 | 594669b0b000: Pull complete |
| 29-May-2019 17:30:41 | 7a79e4a07ea7: Pull complete |
| 29-May-2019 17:30:42 | Digest: sha256:7f890da10a88c961de1355f82eaf70e1730c1bfa5c06aefcbf58323ea319fcad |
| 29-May-2019 17:30:42 | Status: Downloaded newer image for python:3.5 |
| 29-May-2019 17:30:42 | ---> 74a0040526f9 |
| 29-May-2019 17:30:42 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
| 29-May-2019 17:30:42 | ---> Running in 24bb10090f5a |
| 29-May-2019 17:30:42 | Removing intermediate container 24bb10090f5a |
| 29-May-2019 17:30:42 | ---> 792c95e61255 |
| 29-May-2019 17:30:42 | Step 3/7 : EXPOSE 9999 |
| 29-May-2019 17:30:42 | ---> Running in 0b767aaa0eae |
| 29-May-2019 17:30:43 | Removing intermediate container 0b767aaa0eae |
| 29-May-2019 17:30:43 | ---> a910fc54393f |
| 29-May-2019 17:30:43 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
| 29-May-2019 17:30:43 | ---> Running in 46f08a3432cf |
| 29-May-2019 17:30:45 | Collecting pika==0.11.2 |
| 29-May-2019 17:30:45 | Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) |
| 29-May-2019 17:30:45 | Collecting requests==2.18.4 |
| 29-May-2019 17:30:45 | Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) |
| 29-May-2019 17:30:45 | Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4) |
| 29-May-2019 17:30:45 | Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) |
| 29-May-2019 17:30:45 | Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4) |
| 29-May-2019 17:30:45 | Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) |
| 29-May-2019 17:30:45 | Collecting certifi>=2017.4.17 (from requests==2.18.4) |
| 29-May-2019 17:30:45 | Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB) |
| 29-May-2019 17:30:45 | Collecting idna<2.7,>=2.5 (from requests==2.18.4) |
| 29-May-2019 17:30:45 | Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) |
| 29-May-2019 17:30:45 | Installing collected packages: pika, urllib3, chardet, certifi, idna, requests |
| 29-May-2019 17:30:46 | Successfully installed certifi-2019.3.9 chardet-3.0.4 idna-2.6 pika-0.11.2 requests-2.18.4 urllib3-1.22 |
| 29-May-2019 17:30:47 | Removing intermediate container 46f08a3432cf |
| 29-May-2019 17:30:47 | ---> 4a7e24656349 |
| 29-May-2019 17:30:47 | Step 5/7 : WORKDIR /src |
| 29-May-2019 17:30:47 | ---> Running in 74af657801a4 |
| 29-May-2019 17:30:48 | Removing intermediate container 74af657801a4 |
| 29-May-2019 17:30:48 | ---> 9d7cc67b1d2c |
| 29-May-2019 17:30:48 | Step 6/7 : COPY monitor.py /src/ |
| 29-May-2019 17:30:48 | ---> 82ce11c9d538 |
| 29-May-2019 17:30:48 | Step 7/7 : CMD python monitor.py |
| 29-May-2019 17:30:49 | ---> Running in 141fe13fa089 |
| 29-May-2019 17:30:49 | Removing intermediate container 141fe13fa089 |
| 29-May-2019 17:30:49 | ---> bbd72b54d367 |
| 29-May-2019 17:30:49 | Successfully built bbd72b54d367 |
| 29-May-2019 17:30:49 | Successfully tagged clowder/extractors-monitor:latest |
| 29-May-2019 17:30:49 | Finished task 'docker build' with result: Success |
| 29-May-2019 17:30:49 | Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 29-May-2019 17:30:49 | Beginning to execute external process for build 'Clowder - pyclowder2 - bugfix-BD-2344-update-pip-in-simple-extractor-wrapper - Default Job #1 (CATS-PYC297-JOB1-1)' ... running command line: /bin/sh release.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC297-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper bamboo_repository_revision_number=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC297-JOB1-1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC297-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC297-JOB1 bamboo_capability_system_os=linux bamboo_repository_170524724_git_branch=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper bamboo_shortPlanName=bugfix-BD-2344-update-pip-in-simple-extractor-wrapper bamboo_planRepository_name=pyclowder2 bamboo_buildNumber=1 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_repository_170524724_name=pyclowder2 bamboo_repository_170524724_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC297-JOB1-1 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=140673027 bamboo_planName=Clowder - pyclowder2 - bugfix-BD-2344-update-pip-in-simple-extractor-wrapper bamboo_repository_170524724_git_username= bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_6=/home/bamboo/bamboo-agent-home/temp/CATS-PYC297-JOB1-1-ScriptBuildTask-8366113844705827175.sh bamboo_shortPlanKey=PYC297 bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_repository_170524724_branch_name=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper bamboo_buildTimeStamp=2019-05-29T17:24:58.837-05:00 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC297-JOB1-1-ScriptBuildTask-3144933574973156523.sh bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh bamboo_repository_git_branch=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper bamboo_buildResultKey=CATS-PYC297-JOB1-1 bamboo_repository_branch_name=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper bamboo_buildPlanName=Clowder - pyclowder2 - bugfix-BD-2344-update-pip-in-simple-extractor-wrapper - Default Job bamboo_planRepository_1_revision=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=pyclowder2 bamboo_repository_170524724_revision_number=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-170328167 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC297-JOB1 bamboo_planKey=CATS-PYC297 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper |
| 29-May-2019 17:30:49 | Sending build context to Docker daemon 281.1kB |
| 29-May-2019 17:30:49 | |
| 29-May-2019 17:30:49 | Step 1/9 : FROM ubuntu:16.04 |
| 29-May-2019 17:30:49 | ---> 2a697363a870 |
| 29-May-2019 17:30:49 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 29-May-2019 17:30:49 | ---> Using cache |
| 29-May-2019 17:30:49 | ---> ba0d71a8bfaa |
| 29-May-2019 17:30:49 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 29-May-2019 17:30:49 | ---> Using cache |
| 29-May-2019 17:30:49 | ---> 43d663ee6c15 |
| 29-May-2019 17:30:49 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 29-May-2019 17:30:49 | ---> Using cache |
| 29-May-2019 17:30:49 | ---> 7ad7cb1f5f41 |
| 29-May-2019 17:30:49 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 29-May-2019 17:30:49 | ---> Using cache |
| 29-May-2019 17:30:49 | ---> 4b2f196a4559 |
| 29-May-2019 17:30:49 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 29-May-2019 17:30:49 | ---> Using cache |
| 29-May-2019 17:30:49 | ---> 68bcbd949882 |
| 29-May-2019 17:30:49 | Step 7/9 : WORKDIR /home/clowder |
| 29-May-2019 17:30:49 | ---> Using cache |
| 29-May-2019 17:30:49 | ---> 5a65aca4c9a9 |
| 29-May-2019 17:30:49 | Step 8/9 : COPY notifications.json /home/clowder |
| 29-May-2019 17:30:49 | ---> Using cache |
| 29-May-2019 17:30:49 | ---> 35932093ab77 |
| 29-May-2019 17:30:49 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 29-May-2019 17:30:49 | ---> Using cache |
| 29-May-2019 17:30:49 | ---> 463bf7bf328b |
| 29-May-2019 17:30:49 | Successfully built 463bf7bf328b |
| 29-May-2019 17:30:50 | Successfully tagged clowder/pyclowder:latest |
| 29-May-2019 17:30:50 | Sending build context to Docker daemon 279.6kB |
| 29-May-2019 17:30:50 | |
| 29-May-2019 17:30:50 | Step 1/6 : FROM clowder/pyclowder |
| 29-May-2019 17:30:50 | ---> 463bf7bf328b |
| 29-May-2019 17:30:50 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> c8c0448572b7 |
| 29-May-2019 17:30:50 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 4cd46e6a4eb1 |
| 29-May-2019 17:30:50 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> ce1a6850a03b |
| 29-May-2019 17:30:50 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> b7cb2ee693a3 |
| 29-May-2019 17:30:50 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> a292534dd7f9 |
| 29-May-2019 17:30:50 | Successfully built a292534dd7f9 |
| 29-May-2019 17:30:50 | Successfully tagged clowder/pyclowder:onbuild |
| 29-May-2019 17:30:50 | Sending build context to Docker daemon 12.8kB |
| 29-May-2019 17:30:50 | |
| 29-May-2019 17:30:50 | Step 1/5 : FROM clowder/pyclowder:onbuild |
| 29-May-2019 17:30:50 | # Executing 5 build triggers |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 89e47a5c7a91 |
| 29-May-2019 17:30:50 | Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> fca3452f8e1e |
| 29-May-2019 17:30:50 | Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 52c16c608320 |
| 29-May-2019 17:30:50 | Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> f650f68a038b |
| 29-May-2019 17:30:50 | Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 9625e502a1f1 |
| 29-May-2019 17:30:50 | Successfully built 9625e502a1f1 |
| 29-May-2019 17:30:50 | Successfully tagged clowder/extractors-binary-preview:onbuild |
| 29-May-2019 17:30:50 | Sending build context to Docker daemon 6.656kB |
| 29-May-2019 17:30:50 | |
| 29-May-2019 17:30:50 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 29-May-2019 17:30:50 | # Executing 5 build triggers |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 8d58fc9cdb1f |
| 29-May-2019 17:30:50 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> dd2160d53578 |
| 29-May-2019 17:30:50 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 85d91669ddb8 |
| 29-May-2019 17:30:50 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> d81827f1d7b0 |
| 29-May-2019 17:30:50 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> a25dd858525f |
| 29-May-2019 17:30:50 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 60676e60d715 |
| 29-May-2019 17:30:50 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> b2b546d555f3 |
| 29-May-2019 17:30:50 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 46ae2a524eed |
| 29-May-2019 17:30:50 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 1a3694f5dab2 |
| 29-May-2019 17:30:50 | Successfully built 1a3694f5dab2 |
| 29-May-2019 17:30:50 | Successfully tagged clowder/extractors-simple-extractor:onbuild |
| 29-May-2019 17:30:50 | Sending build context to Docker daemon 13.31kB |
| 29-May-2019 17:30:50 | |
| 29-May-2019 17:30:50 | Step 1/10 : FROM clowder/pyclowder:latest |
| 29-May-2019 17:30:50 | ---> 463bf7bf328b |
| 29-May-2019 17:30:50 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> c14736d2932f |
| 29-May-2019 17:30:50 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> cf5e2bc61fd1 |
| 29-May-2019 17:30:50 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 512cd4ea6cf9 |
| 29-May-2019 17:30:50 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> e6a5122476b7 |
| 29-May-2019 17:30:50 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 57d4ecd2ece8 |
| 29-May-2019 17:30:50 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 0093175ec398 |
| 29-May-2019 17:30:50 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 6948bcf00b65 |
| 29-May-2019 17:30:50 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 15467194ccc7 |
| 29-May-2019 17:30:50 | Step 10/10 : CMD python r_extractor.py |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> a71be7564f05 |
| 29-May-2019 17:30:50 | Successfully built a71be7564f05 |
| 29-May-2019 17:30:50 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
| 29-May-2019 17:30:50 | Sending build context to Docker daemon 281.1kB |
| 29-May-2019 17:30:50 | |
| 29-May-2019 17:30:50 | Step 1/9 : FROM ubuntu:16.04 |
| 29-May-2019 17:30:50 | ---> 2a697363a870 |
| 29-May-2019 17:30:50 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> ba0d71a8bfaa |
| 29-May-2019 17:30:50 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 43d663ee6c15 |
| 29-May-2019 17:30:50 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 7ad7cb1f5f41 |
| 29-May-2019 17:30:50 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 4b2f196a4559 |
| 29-May-2019 17:30:50 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 68bcbd949882 |
| 29-May-2019 17:30:50 | Step 7/9 : WORKDIR /home/clowder |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 5a65aca4c9a9 |
| 29-May-2019 17:30:50 | Step 8/9 : COPY notifications.json /home/clowder |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 35932093ab77 |
| 29-May-2019 17:30:50 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 29-May-2019 17:30:50 | ---> Using cache |
| 29-May-2019 17:30:50 | ---> 463bf7bf328b |
| 29-May-2019 17:30:50 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 29-May-2019 17:30:50 | Successfully built 463bf7bf328b |
| 29-May-2019 17:30:51 | Successfully tagged clowder/pyclowder-python3:latest |
| 29-May-2019 17:30:51 | Sending build context to Docker daemon 279.6kB |
| 29-May-2019 17:30:51 | |
| 29-May-2019 17:30:51 | Step 1/6 : FROM clowder/pyclowder |
| 29-May-2019 17:30:51 | ---> 463bf7bf328b |
| 29-May-2019 17:30:51 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> c8c0448572b7 |
| 29-May-2019 17:30:51 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 4cd46e6a4eb1 |
| 29-May-2019 17:30:51 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> ce1a6850a03b |
| 29-May-2019 17:30:51 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> b7cb2ee693a3 |
| 29-May-2019 17:30:51 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> a292534dd7f9 |
| 29-May-2019 17:30:51 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 29-May-2019 17:30:51 | Successfully built a292534dd7f9 |
| 29-May-2019 17:30:51 | Successfully tagged clowder/pyclowder-python3:onbuild |
| 29-May-2019 17:30:51 | Sending build context to Docker daemon 6.656kB |
| 29-May-2019 17:30:51 | |
| 29-May-2019 17:30:51 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 29-May-2019 17:30:51 | # Executing 5 build triggers |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 8d58fc9cdb1f |
| 29-May-2019 17:30:51 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> dd2160d53578 |
| 29-May-2019 17:30:51 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 85d91669ddb8 |
| 29-May-2019 17:30:51 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> d81827f1d7b0 |
| 29-May-2019 17:30:51 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> a25dd858525f |
| 29-May-2019 17:30:51 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 60676e60d715 |
| 29-May-2019 17:30:51 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> b2b546d555f3 |
| 29-May-2019 17:30:51 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 46ae2a524eed |
| 29-May-2019 17:30:51 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 1a3694f5dab2 |
| 29-May-2019 17:30:51 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 29-May-2019 17:30:51 | Successfully built 1a3694f5dab2 |
| 29-May-2019 17:30:51 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
| 29-May-2019 17:30:51 | Sending build context to Docker daemon 13.31kB |
| 29-May-2019 17:30:51 | |
| 29-May-2019 17:30:51 | Step 1/10 : FROM clowder/pyclowder:latest |
| 29-May-2019 17:30:51 | ---> 463bf7bf328b |
| 29-May-2019 17:30:51 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> c14736d2932f |
| 29-May-2019 17:30:51 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> cf5e2bc61fd1 |
| 29-May-2019 17:30:51 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 512cd4ea6cf9 |
| 29-May-2019 17:30:51 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> e6a5122476b7 |
| 29-May-2019 17:30:51 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 57d4ecd2ece8 |
| 29-May-2019 17:30:51 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 0093175ec398 |
| 29-May-2019 17:30:51 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 6948bcf00b65 |
| 29-May-2019 17:30:51 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> 15467194ccc7 |
| 29-May-2019 17:30:51 | Step 10/10 : CMD python r_extractor.py |
| 29-May-2019 17:30:51 | ---> Using cache |
| 29-May-2019 17:30:51 | ---> a71be7564f05 |
| 29-May-2019 17:30:51 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
| 29-May-2019 17:30:51 | Successfully built a71be7564f05 |
| 29-May-2019 17:30:51 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
| 29-May-2019 17:30:51 | Sending build context to Docker daemon 9.216kB |
| 29-May-2019 17:30:51 | |
| 29-May-2019 17:30:51 | Step 1/2 : FROM clowder/pyclowder:onbuild |
| 29-May-2019 17:30:52 | # Executing 5 build triggers |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> ad3666ad7554 |
| 29-May-2019 17:30:52 | Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> f939ff3a357d |
| 29-May-2019 17:30:52 | Successfully built f939ff3a357d |
| 29-May-2019 17:30:52 | Successfully tagged clowder/extractors-wordcount:latest |
| 29-May-2019 17:30:52 | Sending build context to Docker daemon 5.12kB |
| 29-May-2019 17:30:52 | |
| 29-May-2019 17:30:52 | Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild |
| 29-May-2019 17:30:52 | # Executing 5 build triggers |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> 02a01842536e |
| 29-May-2019 17:30:52 | Step 2/3 : ENV EXTRACTION_FUNC="wordcount" |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> 4713d01dbb54 |
| 29-May-2019 17:30:52 | Step 3/3 : ENV EXTRACTION_MODULE="wordcount" |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> 22d9e5586973 |
| 29-May-2019 17:30:52 | Successfully built 22d9e5586973 |
| 29-May-2019 17:30:52 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
| 29-May-2019 17:30:52 | Sending build context to Docker daemon 5.12kB |
| 29-May-2019 17:30:52 | |
| 29-May-2019 17:30:52 | Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild |
| 29-May-2019 17:30:52 | # Executing 5 build triggers |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> 6b1d2e43c640 |
| 29-May-2019 17:30:52 | Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> 2c547350e4c1 |
| 29-May-2019 17:30:52 | Successfully built 2c547350e4c1 |
| 29-May-2019 17:30:52 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
| 29-May-2019 17:30:52 | Sending build context to Docker daemon 8.192kB |
| 29-May-2019 17:30:52 | |
| 29-May-2019 17:30:52 | Step 1/7 : FROM python:3.5 |
| 29-May-2019 17:30:52 | ---> 74a0040526f9 |
| 29-May-2019 17:30:52 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> 792c95e61255 |
| 29-May-2019 17:30:52 | Step 3/7 : EXPOSE 9999 |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> a910fc54393f |
| 29-May-2019 17:30:52 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> 4a7e24656349 |
| 29-May-2019 17:30:52 | Step 5/7 : WORKDIR /src |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> 9d7cc67b1d2c |
| 29-May-2019 17:30:52 | Step 6/7 : COPY monitor.py /src/ |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> 82ce11c9d538 |
| 29-May-2019 17:30:52 | Step 7/7 : CMD python monitor.py |
| 29-May-2019 17:30:52 | ---> Using cache |
| 29-May-2019 17:30:52 | ---> bbd72b54d367 |
| 29-May-2019 17:30:52 | Successfully built bbd72b54d367 |
| 29-May-2019 17:30:52 | Successfully tagged clowder/extractors-monitor:latest |
| 29-May-2019 17:30:52 | Finished task 'docker push' with result: Success |
| 29-May-2019 17:30:52 | Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' |
| 29-May-2019 17:30:52 | Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC297-JOB1... |
| 29-May-2019 17:30:52 | Finished task 'test results' with result: Success |
| 29-May-2019 17:30:52 | Running post build plugin 'Docker Container Cleanup' |
| 29-May-2019 17:30:52 | Running post build plugin 'NCover Results Collector' |
| 29-May-2019 17:30:52 | Running post build plugin 'Clover Results Collector' |
| 29-May-2019 17:30:52 | Running post build plugin 'npm Cache Cleanup' |
| 29-May-2019 17:30:52 | Running post build plugin 'Artifact Copier' |
| 29-May-2019 17:30:52 | Finalising the build... |
| 29-May-2019 17:30:52 | Stopping timer. |
| 29-May-2019 17:30:52 | Build CATS-PYC297-JOB1-1 completed. |
| 29-May-2019 17:30:52 | Running on server: post build plugin 'NCover Results Collector' |
| 29-May-2019 17:30:52 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 29-May-2019 17:30:52 | Running on server: post build plugin 'Clover Delta Calculator' |
| 29-May-2019 17:30:52 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 29-May-2019 17:30:52 | All post build plugins have finished |
| 29-May-2019 17:30:52 | Generating build results summary... |
| 29-May-2019 17:30:53 | Saving build results to disk... |
| 29-May-2019 17:30:53 | Logging substituted variables... |
| 29-May-2019 17:30:53 | Indexing build results... |
| 29-May-2019 17:30:53 | Finished building CATS-PYC297-JOB1-1. |