Build: #1 was successful
Job: Default Job was successful
Build log
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30-May-2019 17:20:10 | Selecting previously unselected package libpcre32-3:amd64. |
30-May-2019 17:20:10 | Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ... |
30-May-2019 17:20:10 | Unpacking libpcre32-3:amd64 (2:8.38-3.1) ... |
30-May-2019 17:20:11 | Selecting previously unselected package libpcre3-dev:amd64. |
30-May-2019 17:20:11 | Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ... |
30-May-2019 17:20:11 | Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ... |
30-May-2019 17:20:12 | Selecting previously unselected package zlib1g-dev:amd64. |
30-May-2019 17:20:12 | Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4.1_amd64.deb ... |
30-May-2019 17:20:12 | Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
30-May-2019 17:20:12 | Selecting previously unselected package libpng12-dev:amd64. |
30-May-2019 17:20:12 | Preparing to unpack .../libpng12-dev_1.2.54-1ubuntu1.1_amd64.deb ... |
30-May-2019 17:20:12 | Unpacking libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
30-May-2019 17:20:12 | Selecting previously unselected package libreadline6-dev:amd64. |
30-May-2019 17:20:12 | Preparing to unpack .../libreadline6-dev_6.3-8ubuntu2_amd64.deb ... |
30-May-2019 17:20:13 | Unpacking libreadline6-dev:amd64 (6.3-8ubuntu2) ... |
30-May-2019 17:20:13 | Selecting previously unselected package libreadline-dev:amd64. |
30-May-2019 17:20:13 | Preparing to unpack .../libreadline-dev_6.3-8ubuntu2_amd64.deb ... |
30-May-2019 17:20:13 | Unpacking libreadline-dev:amd64 (6.3-8ubuntu2) ... |
30-May-2019 17:20:14 | Selecting previously unselected package libtcl8.6:amd64. |
30-May-2019 17:20:14 | Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ... |
30-May-2019 17:20:14 | Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ... |
30-May-2019 17:20:15 | Selecting previously unselected package libtiff5:amd64. |
30-May-2019 17:20:15 | Preparing to unpack .../libtiff5_4.0.6-1ubuntu0.6_amd64.deb ... |
30-May-2019 17:20:15 | Unpacking libtiff5:amd64 (4.0.6-1ubuntu0.6) ... |
30-May-2019 17:20:15 | Selecting previously unselected package libtk8.6:amd64. |
30-May-2019 17:20:15 | Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ... |
30-May-2019 17:20:15 | Unpacking libtk8.6:amd64 (8.6.5-1) ... |
30-May-2019 17:20:15 | Selecting previously unselected package libxt6:amd64. |
30-May-2019 17:20:15 | Preparing to unpack .../libxt6_1%3a1.1.5-0ubuntu1_amd64.deb ... |
30-May-2019 17:20:16 | Unpacking libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
30-May-2019 17:20:16 | Selecting previously unselected package pkg-config. |
30-May-2019 17:20:16 | Preparing to unpack .../pkg-config_0.29.1-0ubuntu1_amd64.deb ... |
30-May-2019 17:20:16 | Unpacking pkg-config (0.29.1-0ubuntu1) ... |
30-May-2019 17:20:16 | Selecting previously unselected package zip. |
30-May-2019 17:20:16 | Preparing to unpack .../archives/zip_3.0-11_amd64.deb ... |
30-May-2019 17:20:16 | Unpacking zip (3.0-11) ... |
30-May-2019 17:20:17 | Selecting previously unselected package unzip. |
30-May-2019 17:20:17 | Preparing to unpack .../unzip_6.0-20ubuntu1_amd64.deb ... |
30-May-2019 17:20:17 | Unpacking unzip (6.0-20ubuntu1) ... |
30-May-2019 17:20:17 | Selecting previously unselected package xdg-utils. |
30-May-2019 17:20:17 | Preparing to unpack .../xdg-utils_1.1.1-1ubuntu1.16.04.3_all.deb ... |
30-May-2019 17:20:17 | Unpacking xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
30-May-2019 17:20:18 | Selecting previously unselected package r-base-core. |
30-May-2019 17:20:18 | Preparing to unpack .../r-base-core_3.4.4-1xenial0_amd64.deb ... |
30-May-2019 17:20:18 | Unpacking r-base-core (3.4.4-1xenial0) ... |
30-May-2019 17:20:21 | Selecting previously unselected package liblzma-dev:amd64. |
30-May-2019 17:20:21 | Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2ubuntu2_amd64.deb ... |
30-May-2019 17:20:21 | Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
30-May-2019 17:20:22 | Selecting previously unselected package r-base-dev. |
30-May-2019 17:20:22 | Preparing to unpack .../r-base-dev_3.4.4-1xenial0_all.deb ... |
30-May-2019 17:20:22 | Unpacking r-base-dev (3.4.4-1xenial0) ... |
30-May-2019 17:20:22 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
30-May-2019 17:20:22 | Processing triggers for mime-support (3.59ubuntu1) ... |
30-May-2019 17:20:22 | Processing triggers for systemd (229-4ubuntu21.21) ... |
30-May-2019 17:20:22 | Setting up libgdbm3:amd64 (1.8.3-13.1) ... |
30-May-2019 17:20:23 | Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.1) ... |
30-May-2019 17:20:23 | No schema files found: doing nothing. |
30-May-2019 17:20:23 | Setting up libxau6:amd64 (1:1.0.8-1) ... |
30-May-2019 17:20:23 | Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... |
30-May-2019 17:20:23 | Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... |
30-May-2019 17:20:23 | Setting up libx11-data (2:1.6.3-1ubuntu2.1) ... |
30-May-2019 17:20:23 | Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ... |
30-May-2019 17:20:24 | Setting up libxext6:amd64 (2:1.3.3-1) ... |
30-May-2019 17:20:24 | Setting up groff-base (1.22.3-7) ... |
30-May-2019 17:20:25 | Setting up bsdmainutils (9.0.6ubuntu3) ... |
30-May-2019 17:20:25 | update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode |
30-May-2019 17:20:25 | update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode |
30-May-2019 17:20:25 | Setting up libpipeline1:amd64 (1.4.1-2) ... |
30-May-2019 17:20:26 | Setting up man-db (2.7.5-1) ... |
30-May-2019 17:20:26 | debconf: unable to initialize frontend: Dialog |
30-May-2019 17:20:26 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
30-May-2019 17:20:26 | debconf: falling back to frontend: Readline |
30-May-2019 17:20:26 | Building database of manual pages ... |
30-May-2019 17:20:35 | Setting up fonts-dejavu-core (2.35-1) ... |
30-May-2019 17:20:36 | Setting up ucf (3.0036) ... |
30-May-2019 17:20:36 | debconf: unable to initialize frontend: Dialog |
30-May-2019 17:20:36 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
30-May-2019 17:20:36 | debconf: falling back to frontend: Readline |
30-May-2019 17:20:36 | Setting up fontconfig-config (2.11.94-0ubuntu1.1) ... |
30-May-2019 17:20:38 | Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ... |
30-May-2019 17:20:38 | Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ... |
30-May-2019 17:20:39 | Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ... |
30-May-2019 17:20:39 | Setting up fontconfig (2.11.94-0ubuntu1.1) ... |
30-May-2019 17:20:41 | Regenerating fonts cache... done. |
30-May-2019 17:20:41 | Setting up x11-common (1:7.7+13ubuntu3.1) ... |
30-May-2019 17:20:43 | debconf: unable to initialize frontend: Dialog |
30-May-2019 17:20:43 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
30-May-2019 17:20:43 | debconf: falling back to frontend: Readline |
30-May-2019 17:20:43 | update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults |
30-May-2019 17:20:43 | invoke-rc.d: could not determine current runlevel |
30-May-2019 17:20:43 | invoke-rc.d: policy-rc.d denied execution of start. |
30-May-2019 17:20:44 | Setting up libice6:amd64 (2:1.0.9-1) ... |
30-May-2019 17:20:44 | Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ... |
30-May-2019 17:20:44 | Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... |
30-May-2019 17:20:44 | Setting up libsigsegv2:amd64 (2.10-4) ... |
30-May-2019 17:20:44 | Setting up libsm6:amd64 (2:1.2.2-1) ... |
30-May-2019 17:20:44 | Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... |
30-May-2019 17:20:45 | Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... |
30-May-2019 17:20:45 | Setting up libxft2:amd64 (2.3.2-1) ... |
30-May-2019 17:20:45 | Setting up libxss1:amd64 (1:1.2.2-1) ... |
30-May-2019 17:20:45 | Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ... |
30-May-2019 17:20:46 | Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ... |
30-May-2019 17:20:46 | Setting up perl (5.22.1-9ubuntu0.6) ... |
30-May-2019 17:20:46 | update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode |
30-May-2019 17:20:46 | Setting up libjbig0:amd64 (2.1-3.1) ... |
30-May-2019 17:20:46 | Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... |
30-May-2019 17:20:46 | Setting up libmpfr4:amd64 (3.1.4-1) ... |
30-May-2019 17:20:46 | Setting up libmpc3:amd64 (1.0.3-1) ... |
30-May-2019 17:20:47 | Setting up tzdata (2019a-0ubuntu0.16.04) ... |
30-May-2019 17:20:47 | debconf: unable to initialize frontend: Dialog |
30-May-2019 17:20:47 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
30-May-2019 17:20:47 | debconf: falling back to frontend: Readline |
30-May-2019 17:20:47 | |
30-May-2019 17:20:47 | Current default time zone: 'Etc/UTC' |
30-May-2019 17:20:47 | Local time is now: Thu May 30 22:20:47 UTC 2019. |
30-May-2019 17:20:47 | Universal Time is now: Thu May 30 22:20:47 UTC 2019. |
30-May-2019 17:20:47 | Run 'dpkg-reconfigure tzdata' if you wish to change it. |
30-May-2019 17:20:47 | |
30-May-2019 17:20:48 | Setting up bzip2 (1.0.6-8) ... |
30-May-2019 17:20:48 | Setting up libmagic1:amd64 (1:5.25-2ubuntu1.2) ... |
30-May-2019 17:20:48 | Setting up file (1:5.25-2ubuntu1.2) ... |
30-May-2019 17:20:49 | Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... |
30-May-2019 17:20:49 | Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... |
30-May-2019 17:20:49 | Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... |
30-May-2019 17:20:49 | Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... |
30-May-2019 17:20:49 | Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... |
30-May-2019 17:20:49 | Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.5) ... |
30-May-2019 17:20:50 | Setting up netbase (5.3) ... |
30-May-2019 17:20:50 | Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ... |
30-May-2019 17:20:50 | Setting up gettext-base (0.19.7-2ubuntu3.1) ... |
30-May-2019 17:20:50 | Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
30-May-2019 17:20:50 | Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
30-May-2019 17:20:50 | Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
30-May-2019 17:20:51 | Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
30-May-2019 17:20:51 | Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... |
30-May-2019 17:20:51 | Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
30-May-2019 17:20:51 | Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... |
30-May-2019 17:20:51 | Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
30-May-2019 17:20:52 | Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
30-May-2019 17:20:52 | Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
30-May-2019 17:20:52 | Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
30-May-2019 17:20:52 | Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
30-May-2019 17:20:52 | Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
30-May-2019 17:20:52 | Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... |
30-May-2019 17:20:52 | Setting up libicu55:amd64 (55.1-7ubuntu0.4) ... |
30-May-2019 17:20:53 | Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... |
30-May-2019 17:20:53 | Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... |
30-May-2019 17:20:53 | Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.5) ... |
30-May-2019 17:20:54 | Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... |
30-May-2019 17:20:54 | Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ... |
30-May-2019 17:20:54 | Setting up libxmuu1:amd64 (2:1.1.2-2) ... |
30-May-2019 17:20:54 | Setting up xauth (1:1.0.9-1ubuntu2) ... |
30-May-2019 17:20:55 | Setting up m4 (1.4.17-5) ... |
30-May-2019 17:20:55 | Setting up autoconf (2.69-9) ... |
30-May-2019 17:20:55 | Setting up autotools-dev (20150820.1) ... |
30-May-2019 17:20:55 | Setting up automake (1:1.15-4ubuntu1) ... |
30-May-2019 17:20:55 | update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode |
30-May-2019 17:20:55 | Setting up binutils (2.26.1-1ubuntu1~16.04.8) ... |
30-May-2019 17:20:55 | Setting up libc-dev-bin (2.23-0ubuntu11) ... |
30-May-2019 17:20:56 | Setting up linux-libc-dev:amd64 (4.4.0-148.174) ... |
30-May-2019 17:20:56 | Setting up libc6-dev:amd64 (2.23-0ubuntu11) ... |
30-May-2019 17:20:56 | Setting up libisl15:amd64 (0.16.1-1) ... |
30-May-2019 17:20:56 | Setting up cpp-5 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:56 | Setting up cpp (4:5.3.1-1ubuntu1) ... |
30-May-2019 17:20:56 | Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:57 | Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:57 | Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:57 | Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:57 | Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:57 | Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:57 | Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:58 | Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:58 | Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:58 | Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:59 | Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:59 | Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:59 | Setting up gcc-5 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:59 | Setting up gcc (4:5.3.1-1ubuntu1) ... |
30-May-2019 17:20:59 | Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:20:59 | Setting up g++-5 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:21:00 | Setting up g++ (4:5.3.1-1ubuntu1) ... |
30-May-2019 17:21:00 | update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode |
30-May-2019 17:21:00 | Setting up make (4.1-6) ... |
30-May-2019 17:21:00 | Setting up libdpkg-perl (1.18.4ubuntu1.5) ... |
30-May-2019 17:21:00 | Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ... |
30-May-2019 17:21:00 | update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode |
30-May-2019 17:21:00 | Setting up patch (2.7.5-1ubuntu0.16.04.1) ... |
30-May-2019 17:21:00 | Setting up dpkg-dev (1.18.4ubuntu1.5) ... |
30-May-2019 17:21:01 | Setting up build-essential (12.1ubuntu2) ... |
30-May-2019 17:21:01 | Setting up libcroco3:amd64 (0.6.11-1) ... |
30-May-2019 17:21:01 | Setting up gettext (0.19.7-2ubuntu3.1) ... |
30-May-2019 17:21:01 | Setting up intltool-debian (0.35.0+20060710.4) ... |
30-May-2019 17:21:01 | Setting up po-debconf (1.0.19) ... |
30-May-2019 17:21:02 | Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ... |
30-May-2019 17:21:02 | Setting up libfile-stripnondeterminism-perl (0.015-1) ... |
30-May-2019 17:21:02 | Setting up libtimedate-perl (2.3000-2) ... |
30-May-2019 17:21:03 | Setting up liburi-perl (1.71-1) ... |
30-May-2019 17:21:03 | Setting up libencode-locale-perl (1.05-1) ... |
30-May-2019 17:21:03 | Setting up libhttp-date-perl (6.02-1) ... |
30-May-2019 17:21:04 | Setting up libfile-listing-perl (6.04-1) ... |
30-May-2019 17:21:04 | Setting up libhtml-tagset-perl (3.20-2) ... |
30-May-2019 17:21:04 | Setting up libhtml-parser-perl (3.72-1) ... |
30-May-2019 17:21:04 | Setting up libhtml-tree-perl (5.03-2) ... |
30-May-2019 17:21:04 | Setting up libio-html-perl (1.001-1) ... |
30-May-2019 17:21:04 | Setting up liblwp-mediatypes-perl (6.02-1) ... |
30-May-2019 17:21:04 | Setting up libhttp-message-perl (6.11-1) ... |
30-May-2019 17:21:05 | Setting up libhttp-cookies-perl (6.01-1) ... |
30-May-2019 17:21:05 | Setting up libhttp-negotiate-perl (6.00-2) ... |
30-May-2019 17:21:05 | Setting up libnet-ssleay-perl (1.72-1build1) ... |
30-May-2019 17:21:05 | Setting up libio-socket-ssl-perl (2.024-1) ... |
30-May-2019 17:21:05 | Setting up libnet-http-perl (6.09-1) ... |
30-May-2019 17:21:05 | Setting up libwww-robotrules-perl (6.01-1) ... |
30-May-2019 17:21:05 | Setting up python-six (1.10.0-3) ... |
30-May-2019 17:21:06 | Setting up python-pkg-resources (20.7.0-1) ... |
30-May-2019 17:21:07 | Setting up python-scour (0.32-1) ... |
30-May-2019 17:21:09 | Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:21:09 | Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:21:09 | Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.11) ... |
30-May-2019 17:21:09 | Setting up gfortran (4:5.3.1-1ubuntu1) ... |
30-May-2019 17:21:10 | update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode |
30-May-2019 17:21:10 | update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode |
30-May-2019 17:21:10 | Setting up icu-devtools (55.1-7ubuntu0.4) ... |
30-May-2019 17:21:10 | Setting up libblas-common (3.6.0-2ubuntu2) ... |
30-May-2019 17:21:10 | Setting up libblas3 (3.6.0-2ubuntu2) ... |
30-May-2019 17:21:10 | update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode |
30-May-2019 17:21:10 | Setting up libblas-dev (3.6.0-2ubuntu2) ... |
30-May-2019 17:21:10 | update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode |
30-May-2019 17:21:10 | Setting up libbz2-dev:amd64 (1.0.6-8) ... |
30-May-2019 17:21:11 | Setting up libpixman-1-0:amd64 (0.33.6-1) ... |
30-May-2019 17:21:11 | Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... |
30-May-2019 17:21:11 | Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... |
30-May-2019 17:21:11 | Setting up libcairo2:amd64 (1.14.6-1) ... |
30-May-2019 17:21:11 | Setting up libcurl3:amd64 (7.47.0-1ubuntu2.13) ... |
30-May-2019 17:21:11 | Setting up libdatrie1:amd64 (0.2.10-2) ... |
30-May-2019 17:21:11 | Setting up libgraphite2-3:amd64 (1.3.10-0ubuntu0.16.04.1) ... |
30-May-2019 17:21:11 | Setting up libharfbuzz0b:amd64 (1.0.1-1ubuntu0.1) ... |
30-May-2019 17:21:12 | Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... |
30-May-2019 17:21:12 | Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3.1) ... |
30-May-2019 17:21:12 | Setting up libjpeg8:amd64 (8c-2ubuntu8) ... |
30-May-2019 17:21:13 | Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... |
30-May-2019 17:21:13 | Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... |
30-May-2019 17:21:13 | Setting up liblapack3 (3.6.0-2ubuntu2) ... |
30-May-2019 17:21:13 | update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode |
30-May-2019 17:21:14 | Setting up liblapack-dev (3.6.0-2ubuntu2) ... |
30-May-2019 17:21:14 | update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode |
30-May-2019 17:21:14 | Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... |
30-May-2019 17:21:14 | Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... |
30-May-2019 17:21:14 | Setting up libthai-data (0.1.24-2) ... |
30-May-2019 17:21:14 | Setting up libthai0:amd64 (0.1.24-2) ... |
30-May-2019 17:21:15 | Setting up libpango-1.0-0:amd64 (1.38.1-1) ... |
30-May-2019 17:21:15 | Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... |
30-May-2019 17:21:15 | Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... |
30-May-2019 17:21:15 | Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... |
30-May-2019 17:21:15 | debconf: unable to initialize frontend: Dialog |
30-May-2019 17:21:15 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
30-May-2019 17:21:15 | debconf: falling back to frontend: Readline |
30-May-2019 17:21:15 | |
30-May-2019 17:21:15 | Creating config file /etc/papersize with new version |
30-May-2019 17:21:15 | Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... |
30-May-2019 17:21:15 | Setting up libpcre16-3:amd64 (2:8.38-3.1) ... |
30-May-2019 17:21:16 | Setting up libpcre32-3:amd64 (2:8.38-3.1) ... |
30-May-2019 17:21:16 | Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... |
30-May-2019 17:21:16 | Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4.1) ... |
30-May-2019 17:21:16 | Setting up libpng12-dev:amd64 (1.2.54-1ubuntu1.1) ... |
30-May-2019 17:21:16 | Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... |
30-May-2019 17:21:16 | Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... |
30-May-2019 17:21:17 | Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... |
30-May-2019 17:21:17 | Setting up libtiff5:amd64 (4.0.6-1ubuntu0.6) ... |
30-May-2019 17:21:17 | Setting up libtk8.6:amd64 (8.6.5-1) ... |
30-May-2019 17:21:17 | Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... |
30-May-2019 17:21:18 | Setting up pkg-config (0.29.1-0ubuntu1) ... |
30-May-2019 17:21:18 | Setting up zip (3.0-11) ... |
30-May-2019 17:21:19 | Setting up unzip (6.0-20ubuntu1) ... |
30-May-2019 17:21:19 | Setting up xdg-utils (1.1.1-1ubuntu1.16.04.3) ... |
30-May-2019 17:21:19 | Setting up r-base-core (3.4.4-1xenial0) ... |
30-May-2019 17:21:19 | debconf: unable to initialize frontend: Dialog |
30-May-2019 17:21:19 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
30-May-2019 17:21:19 | debconf: falling back to frontend: Readline |
30-May-2019 17:21:19 | |
30-May-2019 17:21:19 | Creating config file /etc/R/Renviron with new version |
30-May-2019 17:21:20 | Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... |
30-May-2019 17:21:20 | Setting up debhelper (9.20160115ubuntu3) ... |
30-May-2019 17:21:20 | Setting up libwww-perl (6.15-1) ... |
30-May-2019 17:21:20 | Setting up libxml-parser-perl (2.44-1build1) ... |
30-May-2019 17:21:20 | Setting up intltool (0.51.0-2ubuntu1.16.04.1) ... |
30-May-2019 17:21:20 | Setting up dh-translations (129) ... |
30-May-2019 17:21:20 | Setting up cdbs (0.4.130ubuntu2) ... |
30-May-2019 17:21:21 | Setting up r-base-dev (3.4.4-1xenial0) ... |
30-May-2019 17:21:21 | Setting up dh-strip-nondeterminism (0.015-1) ... |
30-May-2019 17:21:21 | Setting up liblwp-protocol-https-perl (6.06-2) ... |
30-May-2019 17:21:21 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
30-May-2019 17:21:22 | Processing triggers for systemd (229-4ubuntu21.21) ... |
30-May-2019 17:21:22 | Installing package into '/usr/local/lib/R/site-library' |
30-May-2019 17:21:22 | (as 'lib' is unspecified) |
30-May-2019 17:21:23 | trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.6.tar.gz' |
30-May-2019 17:21:23 | Content type 'application/x-gzip' length 1052728 bytes (1.0 MB) |
30-May-2019 17:21:23 | ================================================== |
30-May-2019 17:21:23 | downloaded 1.0 MB |
30-May-2019 17:21:23 | |
30-May-2019 17:21:24 | * installing *source* package 'jsonlite' ... |
30-May-2019 17:21:24 | ** package 'jsonlite' successfully unpacked and MD5 sums checked |
30-May-2019 17:21:24 | ** libs |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base64.c -o base64.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_array.c -o collapse_array.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_object.c -o collapse_object.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_pretty.c -o collapse_pretty.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c escape_chars.c -o escape_chars.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer64_to_na.c -o integer64_to_na.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_datelist.c -o is_datelist.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_recordlist.c -o is_recordlist.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c is_scalarlist.c -o is_scalarlist.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c modp_numtoa.c -o modp_numtoa.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c null_to_na.c -o null_to_na.o |
30-May-2019 17:21:24 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c num_to_char.c -o num_to_char.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parse.c -o parse.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prettify.c -o prettify.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c push_parser.c -o push_parser.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c r-base64.c -o r-base64.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c row_collapse.c -o row_collapse.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transpose_list.c -o transpose_list.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c validate.c -o validate.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl.c -o yajl/yajl.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o |
30-May-2019 17:21:25 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o |
30-May-2019 17:21:26 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o |
30-May-2019 17:21:26 | gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o |
30-May-2019 17:21:26 | ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o |
30-May-2019 17:21:26 | g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/usr/lib/R/lib -lR |
30-May-2019 17:21:26 | installing to /usr/local/lib/R/site-library/jsonlite/libs |
30-May-2019 17:21:26 | ** R |
30-May-2019 17:21:26 | ** inst |
30-May-2019 17:21:26 | ** preparing package for lazy loading |
30-May-2019 17:21:26 | ** help |
30-May-2019 17:21:26 | *** installing help indices |
30-May-2019 17:21:26 | ** building package indices |
30-May-2019 17:21:26 | ** installing vignettes |
30-May-2019 17:21:26 | ** testing if installed package can be loaded |
30-May-2019 17:21:27 | * DONE (jsonlite) |
30-May-2019 17:21:27 | |
30-May-2019 17:21:27 | The downloaded source packages are in |
30-May-2019 17:21:27 | '/tmp/RtmpcruEPM/downloaded_packages' |
30-May-2019 17:21:27 | [1] "/usr/local/lib/R/site-library/jsonlite" |
30-May-2019 17:21:34 | Removing intermediate container 10bbbf8cbc14 |
30-May-2019 17:21:34 | ---> 1580967a3d6b |
30-May-2019 17:21:34 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
30-May-2019 17:21:34 | ---> 3f1be02847af |
30-May-2019 17:21:34 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:21:35 | ---> Running in 22b7741acde4 |
30-May-2019 17:21:36 | Removing intermediate container 22b7741acde4 |
30-May-2019 17:21:36 | ---> 742bd9c4a234 |
30-May-2019 17:21:36 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:21:36 | ---> Running in f677608e36a9 |
30-May-2019 17:21:36 | Removing intermediate container f677608e36a9 |
30-May-2019 17:21:36 | ---> b44cbd59e366 |
30-May-2019 17:21:36 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
30-May-2019 17:21:36 | ---> Running in 4fdceb0d1e89 |
30-May-2019 17:21:37 | Removing intermediate container 4fdceb0d1e89 |
30-May-2019 17:21:37 | ---> da2d45afa047 |
30-May-2019 17:21:37 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
30-May-2019 17:21:37 | ---> Running in 17d0becfed5c |
30-May-2019 17:21:37 | Removing intermediate container 17d0becfed5c |
30-May-2019 17:21:37 | ---> 54594fbcc211 |
30-May-2019 17:21:37 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:21:38 | ---> Running in 164547933daa |
30-May-2019 17:21:38 | Removing intermediate container 164547933daa |
30-May-2019 17:21:38 | ---> c2775c312c46 |
30-May-2019 17:21:38 | Step 10/10 : CMD python r_extractor.py |
30-May-2019 17:21:38 | ---> Running in 8a3d87f6ea3a |
30-May-2019 17:21:39 | Removing intermediate container 8a3d87f6ea3a |
30-May-2019 17:21:39 | ---> 43b156631f5f |
30-May-2019 17:21:39 | Successfully built 43b156631f5f |
30-May-2019 17:21:39 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
30-May-2019 17:21:39 | Sending build context to Docker daemon 281.1kB |
30-May-2019 17:21:39 | |
30-May-2019 17:21:39 | Step 1/9 : FROM ubuntu:16.04 |
30-May-2019 17:21:39 | ---> 2a697363a870 |
30-May-2019 17:21:39 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> 272a7d5128c9 |
30-May-2019 17:21:39 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> c4e7a6964674 |
30-May-2019 17:21:39 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> 35bf7c80524c |
30-May-2019 17:21:39 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> 9461f4f15748 |
30-May-2019 17:21:39 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> cf4b7abd7b3a |
30-May-2019 17:21:39 | Step 7/9 : WORKDIR /home/clowder |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> 8101fef7758a |
30-May-2019 17:21:39 | Step 8/9 : COPY notifications.json /home/clowder |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> d54f478db5da |
30-May-2019 17:21:39 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> 7a2aeedaf8f3 |
30-May-2019 17:21:39 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
30-May-2019 17:21:39 | Successfully built 7a2aeedaf8f3 |
30-May-2019 17:21:39 | Successfully tagged clowder/pyclowder-python3:latest |
30-May-2019 17:21:39 | Sending build context to Docker daemon 279.6kB |
30-May-2019 17:21:39 | |
30-May-2019 17:21:39 | Step 1/6 : FROM clowder/pyclowder |
30-May-2019 17:21:39 | ---> 7a2aeedaf8f3 |
30-May-2019 17:21:39 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> e6e2c49fef7c |
30-May-2019 17:21:39 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> 23e8f66d3586 |
30-May-2019 17:21:39 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> b5e7b01f89c0 |
30-May-2019 17:21:39 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> 860585cb7c28 |
30-May-2019 17:21:39 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:21:39 | ---> Using cache |
30-May-2019 17:21:39 | ---> 79e7adaa016e |
30-May-2019 17:21:39 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
30-May-2019 17:21:39 | Successfully built 79e7adaa016e |
30-May-2019 17:21:39 | Successfully tagged clowder/pyclowder-python3:onbuild |
30-May-2019 17:21:39 | Sending build context to Docker daemon 6.656kB |
30-May-2019 17:21:39 | |
30-May-2019 17:21:40 | Step 1/9 : FROM clowder/pyclowder:onbuild |
30-May-2019 17:21:40 | # Executing 5 build triggers |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 9899d9ebe427 |
30-May-2019 17:21:40 | Step 2/9 : ENV EXTRACTION_FUNC="" |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 581ff55835c8 |
30-May-2019 17:21:40 | Step 3/9 : ENV EXTRACTION_MODULE="" |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 1a9cdb3b636f |
30-May-2019 17:21:40 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 36beb5a08c44 |
30-May-2019 17:21:40 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 08ce34fe41ac |
30-May-2019 17:21:40 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> aedd6b16d3ae |
30-May-2019 17:21:40 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 7b06046f46da |
30-May-2019 17:21:40 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 3e5e6855f0e9 |
30-May-2019 17:21:40 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> eed6f8599911 |
30-May-2019 17:21:40 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
30-May-2019 17:21:40 | Successfully built eed6f8599911 |
30-May-2019 17:21:40 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
30-May-2019 17:21:40 | Sending build context to Docker daemon 13.31kB |
30-May-2019 17:21:40 | |
30-May-2019 17:21:40 | Step 1/10 : FROM clowder/pyclowder:latest |
30-May-2019 17:21:40 | ---> 7a2aeedaf8f3 |
30-May-2019 17:21:40 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 0fff788d0e05 |
30-May-2019 17:21:40 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 1580967a3d6b |
30-May-2019 17:21:40 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 3f1be02847af |
30-May-2019 17:21:40 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 742bd9c4a234 |
30-May-2019 17:21:40 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> b44cbd59e366 |
30-May-2019 17:21:40 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> da2d45afa047 |
30-May-2019 17:21:40 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 54594fbcc211 |
30-May-2019 17:21:40 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> c2775c312c46 |
30-May-2019 17:21:40 | Step 10/10 : CMD python r_extractor.py |
30-May-2019 17:21:40 | ---> Using cache |
30-May-2019 17:21:40 | ---> 43b156631f5f |
30-May-2019 17:21:40 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
30-May-2019 17:21:40 | Successfully built 43b156631f5f |
30-May-2019 17:21:40 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
30-May-2019 17:21:40 | Sending build context to Docker daemon 9.216kB |
30-May-2019 17:21:40 | |
30-May-2019 17:21:40 | Step 1/2 : FROM clowder/pyclowder:onbuild |
30-May-2019 17:21:40 | # Executing 5 build triggers |
30-May-2019 17:21:40 | ---> Running in a6bfa36799e7 |
30-May-2019 17:21:42 | Removing intermediate container a6bfa36799e7 |
30-May-2019 17:21:43 | ---> Running in 89df97e937bc |
30-May-2019 17:21:44 | Removing intermediate container 89df97e937bc |
30-May-2019 17:21:45 | ---> 20ca3c35577f |
30-May-2019 17:21:45 | Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" |
30-May-2019 17:21:45 | ---> Running in 65fc363337d1 |
30-May-2019 17:21:45 | Removing intermediate container 65fc363337d1 |
30-May-2019 17:21:45 | ---> b207dae955bd |
30-May-2019 17:21:45 | Successfully built b207dae955bd |
30-May-2019 17:21:45 | Successfully tagged clowder/extractors-wordcount:latest |
30-May-2019 17:21:45 | Sending build context to Docker daemon 5.12kB |
30-May-2019 17:21:45 | |
30-May-2019 17:21:46 | Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild |
30-May-2019 17:21:46 | # Executing 5 build triggers |
30-May-2019 17:21:46 | ---> Running in 143995bf5158 |
30-May-2019 17:21:48 | Removing intermediate container 143995bf5158 |
30-May-2019 17:21:48 | ---> Running in 970b390c7b16 |
30-May-2019 17:21:50 | Removing intermediate container 970b390c7b16 |
30-May-2019 17:21:50 | ---> 685b6858cc86 |
30-May-2019 17:21:50 | Step 2/3 : ENV EXTRACTION_FUNC="wordcount" |
30-May-2019 17:21:50 | ---> Running in 45659d43a4ff |
30-May-2019 17:21:51 | Removing intermediate container 45659d43a4ff |
30-May-2019 17:21:51 | ---> cda1d51fdf81 |
30-May-2019 17:21:51 | Step 3/3 : ENV EXTRACTION_MODULE="wordcount" |
30-May-2019 17:21:51 | ---> Running in 65f599b19e02 |
30-May-2019 17:21:52 | Removing intermediate container 65f599b19e02 |
30-May-2019 17:21:52 | ---> 99bf4318ff2f |
30-May-2019 17:21:52 | Successfully built 99bf4318ff2f |
30-May-2019 17:21:52 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
30-May-2019 17:21:52 | Sending build context to Docker daemon 5.12kB |
30-May-2019 17:21:52 | |
30-May-2019 17:21:52 | Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild |
30-May-2019 17:21:52 | # Executing 5 build triggers |
30-May-2019 17:21:53 | ---> Running in 56963c3ace70 |
30-May-2019 17:21:54 | Removing intermediate container 56963c3ace70 |
30-May-2019 17:21:55 | ---> Running in f88f0df85883 |
30-May-2019 17:21:57 | Removing intermediate container f88f0df85883 |
30-May-2019 17:21:57 | ---> f1ed202438ef |
30-May-2019 17:21:57 | Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
30-May-2019 17:21:57 | ---> Running in e7551930af0b |
30-May-2019 17:21:57 | Removing intermediate container e7551930af0b |
30-May-2019 17:21:57 | ---> 8eead3ada810 |
30-May-2019 17:21:57 | Successfully built 8eead3ada810 |
30-May-2019 17:21:57 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
30-May-2019 17:21:58 | Sending build context to Docker daemon 8.192kB |
30-May-2019 17:21:58 | |
30-May-2019 17:21:58 | Step 1/7 : FROM python:3.5 |
30-May-2019 17:21:58 | 3.5: Pulling from library/python |
30-May-2019 17:21:58 | c5e155d5a1d1: Pulling fs layer |
30-May-2019 17:21:58 | 221d80d00ae9: Pulling fs layer |
30-May-2019 17:21:58 | 4250b3117dca: Pulling fs layer |
30-May-2019 17:21:58 | 3b7ca19181b2: Pulling fs layer |
30-May-2019 17:21:58 | 425d7b2a5bcc: Pulling fs layer |
30-May-2019 17:21:58 | d7a526a3eca5: Pulling fs layer |
30-May-2019 17:21:58 | 03339fb09dd6: Pulling fs layer |
30-May-2019 17:21:58 | 594669b0b000: Pulling fs layer |
30-May-2019 17:21:58 | 7a79e4a07ea7: Pulling fs layer |
30-May-2019 17:21:58 | 594669b0b000: Waiting |
30-May-2019 17:21:58 | d7a526a3eca5: Waiting |
30-May-2019 17:21:58 | 03339fb09dd6: Waiting |
30-May-2019 17:21:58 | 7a79e4a07ea7: Waiting |
30-May-2019 17:21:58 | 3b7ca19181b2: Waiting |
30-May-2019 17:21:58 | 425d7b2a5bcc: Waiting |
30-May-2019 17:21:58 | 4250b3117dca: Verifying Checksum |
30-May-2019 17:21:58 | 4250b3117dca: Download complete |
30-May-2019 17:21:59 | 221d80d00ae9: Verifying Checksum |
30-May-2019 17:21:59 | 221d80d00ae9: Download complete |
30-May-2019 17:21:59 | c5e155d5a1d1: Download complete |
30-May-2019 17:22:00 | d7a526a3eca5: Verifying Checksum |
30-May-2019 17:22:00 | d7a526a3eca5: Download complete |
30-May-2019 17:22:00 | 3b7ca19181b2: Verifying Checksum |
30-May-2019 17:22:00 | 3b7ca19181b2: Download complete |
30-May-2019 17:22:00 | 594669b0b000: Verifying Checksum |
30-May-2019 17:22:00 | 594669b0b000: Download complete |
30-May-2019 17:22:00 | 7a79e4a07ea7: Verifying Checksum |
30-May-2019 17:22:00 | 7a79e4a07ea7: Download complete |
30-May-2019 17:22:01 | 03339fb09dd6: Verifying Checksum |
30-May-2019 17:22:01 | 03339fb09dd6: Download complete |
30-May-2019 17:22:02 | c5e155d5a1d1: Pull complete |
30-May-2019 17:22:03 | 221d80d00ae9: Pull complete |
30-May-2019 17:22:03 | 4250b3117dca: Pull complete |
30-May-2019 17:22:05 | 425d7b2a5bcc: Verifying Checksum |
30-May-2019 17:22:05 | 425d7b2a5bcc: Download complete |
30-May-2019 17:22:10 | 3b7ca19181b2: Pull complete |
30-May-2019 17:22:19 | 425d7b2a5bcc: Pull complete |
30-May-2019 17:22:20 | d7a526a3eca5: Pull complete |
30-May-2019 17:22:21 | 03339fb09dd6: Pull complete |
30-May-2019 17:22:22 | 594669b0b000: Pull complete |
30-May-2019 17:22:22 | 7a79e4a07ea7: Pull complete |
30-May-2019 17:22:22 | Digest: sha256:7f890da10a88c961de1355f82eaf70e1730c1bfa5c06aefcbf58323ea319fcad |
30-May-2019 17:22:22 | Status: Downloaded newer image for python:3.5 |
30-May-2019 17:22:22 | ---> 74a0040526f9 |
30-May-2019 17:22:22 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
30-May-2019 17:22:23 | ---> Running in fee6b27bd4d0 |
30-May-2019 17:22:23 | Removing intermediate container fee6b27bd4d0 |
30-May-2019 17:22:23 | ---> 0f4f82f9baad |
30-May-2019 17:22:23 | Step 3/7 : EXPOSE 9999 |
30-May-2019 17:22:23 | ---> Running in 39a66a1cc312 |
30-May-2019 17:22:24 | Removing intermediate container 39a66a1cc312 |
30-May-2019 17:22:24 | ---> c3ca695b477b |
30-May-2019 17:22:24 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
30-May-2019 17:22:24 | ---> Running in 80428305670c |
30-May-2019 17:22:26 | Collecting pika==0.11.2 |
30-May-2019 17:22:27 | Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) |
30-May-2019 17:22:27 | Collecting requests==2.18.4 |
30-May-2019 17:22:27 | Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) |
30-May-2019 17:22:27 | Collecting certifi>=2017.4.17 (from requests==2.18.4) |
30-May-2019 17:22:27 | Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB) |
30-May-2019 17:22:27 | Collecting idna<2.7,>=2.5 (from requests==2.18.4) |
30-May-2019 17:22:27 | Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) |
30-May-2019 17:22:27 | Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4) |
30-May-2019 17:22:27 | Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) |
30-May-2019 17:22:27 | Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4) |
30-May-2019 17:22:27 | Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) |
30-May-2019 17:22:27 | Installing collected packages: pika, certifi, idna, urllib3, chardet, requests |
30-May-2019 17:22:27 | Successfully installed certifi-2019.3.9 chardet-3.0.4 idna-2.6 pika-0.11.2 requests-2.18.4 urllib3-1.22 |
30-May-2019 17:22:29 | Removing intermediate container 80428305670c |
30-May-2019 17:22:29 | ---> c98c56290cba |
30-May-2019 17:22:29 | Step 5/7 : WORKDIR /src |
30-May-2019 17:22:29 | ---> Running in 57d26f187dfd |
30-May-2019 17:22:30 | Removing intermediate container 57d26f187dfd |
30-May-2019 17:22:30 | ---> e913ab5e48c6 |
30-May-2019 17:22:30 | Step 6/7 : COPY monitor.py /src/ |
30-May-2019 17:22:30 | ---> 967411183950 |
30-May-2019 17:22:30 | Step 7/7 : CMD python monitor.py |
30-May-2019 17:22:30 | ---> Running in 7f4413e8ca8b |
30-May-2019 17:22:31 | Removing intermediate container 7f4413e8ca8b |
30-May-2019 17:22:31 | ---> bcf6c5a97b9a |
30-May-2019 17:22:31 | Successfully built bcf6c5a97b9a |
30-May-2019 17:22:31 | Successfully tagged clowder/extractors-monitor:latest |
30-May-2019 17:22:31 | Finished task 'docker build' with result: Success |
30-May-2019 17:22:31 | Starting task 'docker push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
30-May-2019 17:22:31 | Beginning to execute external process for build 'Clowder - pyclowder2 - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding - Default Job #1 (CATS-PYC299-JOB1-1)' ... running command line: /bin/sh release.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC299-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_repository_revision_number=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC299-JOB1-1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_repository_170524726_branch_name=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC299-JOB1 bamboo_planRepository_1_name=pyclowder2 bamboo_buildKey=CATS-PYC299-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_planRepository_name=pyclowder2 bamboo_repository_170524726_git_username= bamboo_buildNumber=1 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC299-JOB1-1 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_agentId=140673027 bamboo_planName=Clowder - pyclowder2 - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_6=/home/bamboo/bamboo-agent-home/temp/CATS-PYC299-JOB1-1-ScriptBuildTask-823371777646111992.sh bamboo_shortPlanKey=PYC299 bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_buildTimeStamp=2019-05-30T17:16:55.199-05:00 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_3=/home/bamboo/bamboo-agent-home/temp/CATS-PYC299-JOB1-1-ScriptBuildTask-7211009251372352696.sh bamboo_build_commandline_com_atlassian_bamboo_plugins_scripttask_task_builder_script_2=/bin/sh docker.sh bamboo_repository_170524726_revision_number=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_repository_git_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_buildResultKey=CATS-PYC299-JOB1-1 bamboo_repository_branch_name=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_buildPlanName=Clowder - pyclowder2 - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding - Default Job bamboo_planRepository_1_revision=8c97747b1d0882a0524eb5885c4f82791a45c25d bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_170524726_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_repository_name=pyclowder2 bamboo_repository_170524726_name=pyclowder2 bamboo_repository_170524726_git_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-170328171 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC299-JOB1 bamboo_planKey=CATS-PYC299 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder2.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding |
30-May-2019 17:22:31 | Sending build context to Docker daemon 281.1kB |
30-May-2019 17:22:31 | |
30-May-2019 17:22:31 | Step 1/9 : FROM ubuntu:16.04 |
30-May-2019 17:22:31 | ---> 2a697363a870 |
30-May-2019 17:22:31 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 272a7d5128c9 |
30-May-2019 17:22:31 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> c4e7a6964674 |
30-May-2019 17:22:31 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 35bf7c80524c |
30-May-2019 17:22:31 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 9461f4f15748 |
30-May-2019 17:22:31 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> cf4b7abd7b3a |
30-May-2019 17:22:31 | Step 7/9 : WORKDIR /home/clowder |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 8101fef7758a |
30-May-2019 17:22:31 | Step 8/9 : COPY notifications.json /home/clowder |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> d54f478db5da |
30-May-2019 17:22:31 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 7a2aeedaf8f3 |
30-May-2019 17:22:31 | Successfully built 7a2aeedaf8f3 |
30-May-2019 17:22:31 | Successfully tagged clowder/pyclowder:latest |
30-May-2019 17:22:31 | Sending build context to Docker daemon 279.6kB |
30-May-2019 17:22:31 | |
30-May-2019 17:22:31 | Step 1/6 : FROM clowder/pyclowder |
30-May-2019 17:22:31 | ---> 7a2aeedaf8f3 |
30-May-2019 17:22:31 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> e6e2c49fef7c |
30-May-2019 17:22:31 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 23e8f66d3586 |
30-May-2019 17:22:31 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> b5e7b01f89c0 |
30-May-2019 17:22:31 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 860585cb7c28 |
30-May-2019 17:22:31 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 79e7adaa016e |
30-May-2019 17:22:31 | Successfully built 79e7adaa016e |
30-May-2019 17:22:31 | Successfully tagged clowder/pyclowder:onbuild |
30-May-2019 17:22:31 | Sending build context to Docker daemon 12.8kB |
30-May-2019 17:22:31 | |
30-May-2019 17:22:31 | Step 1/5 : FROM clowder/pyclowder:onbuild |
30-May-2019 17:22:31 | # Executing 5 build triggers |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> a4af5539d875 |
30-May-2019 17:22:31 | Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> d29e323f043e |
30-May-2019 17:22:31 | Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 301a12811114 |
30-May-2019 17:22:31 | Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 1b60c8b4ca01 |
30-May-2019 17:22:31 | Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 91e54a98078d |
30-May-2019 17:22:31 | Successfully built 91e54a98078d |
30-May-2019 17:22:31 | Successfully tagged clowder/extractors-binary-preview:onbuild |
30-May-2019 17:22:31 | Sending build context to Docker daemon 6.656kB |
30-May-2019 17:22:31 | |
30-May-2019 17:22:31 | Step 1/9 : FROM clowder/pyclowder:onbuild |
30-May-2019 17:22:31 | # Executing 5 build triggers |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 9899d9ebe427 |
30-May-2019 17:22:31 | Step 2/9 : ENV EXTRACTION_FUNC="" |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 581ff55835c8 |
30-May-2019 17:22:31 | Step 3/9 : ENV EXTRACTION_MODULE="" |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 1a9cdb3b636f |
30-May-2019 17:22:31 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 36beb5a08c44 |
30-May-2019 17:22:31 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 08ce34fe41ac |
30-May-2019 17:22:31 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> aedd6b16d3ae |
30-May-2019 17:22:31 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 7b06046f46da |
30-May-2019 17:22:31 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> 3e5e6855f0e9 |
30-May-2019 17:22:31 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
30-May-2019 17:22:31 | ---> Using cache |
30-May-2019 17:22:31 | ---> eed6f8599911 |
30-May-2019 17:22:31 | Successfully built eed6f8599911 |
30-May-2019 17:22:32 | Successfully tagged clowder/extractors-simple-extractor:onbuild |
30-May-2019 17:22:32 | Sending build context to Docker daemon 13.31kB |
30-May-2019 17:22:32 | |
30-May-2019 17:22:32 | Step 1/10 : FROM clowder/pyclowder:latest |
30-May-2019 17:22:32 | ---> 7a2aeedaf8f3 |
30-May-2019 17:22:32 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 0fff788d0e05 |
30-May-2019 17:22:32 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 1580967a3d6b |
30-May-2019 17:22:32 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 3f1be02847af |
30-May-2019 17:22:32 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 742bd9c4a234 |
30-May-2019 17:22:32 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> b44cbd59e366 |
30-May-2019 17:22:32 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> da2d45afa047 |
30-May-2019 17:22:32 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 54594fbcc211 |
30-May-2019 17:22:32 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> c2775c312c46 |
30-May-2019 17:22:32 | Step 10/10 : CMD python r_extractor.py |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 43b156631f5f |
30-May-2019 17:22:32 | Successfully built 43b156631f5f |
30-May-2019 17:22:32 | Successfully tagged clowder/extractors-simple-r-extractor:onbuild |
30-May-2019 17:22:32 | Sending build context to Docker daemon 281.1kB |
30-May-2019 17:22:32 | |
30-May-2019 17:22:32 | Step 1/9 : FROM ubuntu:16.04 |
30-May-2019 17:22:32 | ---> 2a697363a870 |
30-May-2019 17:22:32 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 272a7d5128c9 |
30-May-2019 17:22:32 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> c4e7a6964674 |
30-May-2019 17:22:32 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 35bf7c80524c |
30-May-2019 17:22:32 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 9461f4f15748 |
30-May-2019 17:22:32 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> cf4b7abd7b3a |
30-May-2019 17:22:32 | Step 7/9 : WORKDIR /home/clowder |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 8101fef7758a |
30-May-2019 17:22:32 | Step 8/9 : COPY notifications.json /home/clowder |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> d54f478db5da |
30-May-2019 17:22:32 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 7a2aeedaf8f3 |
30-May-2019 17:22:32 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
30-May-2019 17:22:32 | Successfully built 7a2aeedaf8f3 |
30-May-2019 17:22:32 | Successfully tagged clowder/pyclowder-python3:latest |
30-May-2019 17:22:32 | Sending build context to Docker daemon 279.6kB |
30-May-2019 17:22:32 | |
30-May-2019 17:22:32 | Step 1/6 : FROM clowder/pyclowder |
30-May-2019 17:22:32 | ---> 7a2aeedaf8f3 |
30-May-2019 17:22:32 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> e6e2c49fef7c |
30-May-2019 17:22:32 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 23e8f66d3586 |
30-May-2019 17:22:32 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> b5e7b01f89c0 |
30-May-2019 17:22:32 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 860585cb7c28 |
30-May-2019 17:22:32 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 79e7adaa016e |
30-May-2019 17:22:32 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
30-May-2019 17:22:32 | Successfully built 79e7adaa016e |
30-May-2019 17:22:32 | Successfully tagged clowder/pyclowder-python3:onbuild |
30-May-2019 17:22:32 | Sending build context to Docker daemon 6.656kB |
30-May-2019 17:22:32 | |
30-May-2019 17:22:32 | Step 1/9 : FROM clowder/pyclowder:onbuild |
30-May-2019 17:22:32 | # Executing 5 build triggers |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 9899d9ebe427 |
30-May-2019 17:22:32 | Step 2/9 : ENV EXTRACTION_FUNC="" |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 581ff55835c8 |
30-May-2019 17:22:32 | Step 3/9 : ENV EXTRACTION_MODULE="" |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 1a9cdb3b636f |
30-May-2019 17:22:32 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 36beb5a08c44 |
30-May-2019 17:22:32 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 08ce34fe41ac |
30-May-2019 17:22:32 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> aedd6b16d3ae |
30-May-2019 17:22:32 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 7b06046f46da |
30-May-2019 17:22:32 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> 3e5e6855f0e9 |
30-May-2019 17:22:32 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
30-May-2019 17:22:32 | ---> Using cache |
30-May-2019 17:22:32 | ---> eed6f8599911 |
30-May-2019 17:22:32 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
30-May-2019 17:22:32 | Successfully built eed6f8599911 |
30-May-2019 17:22:33 | Successfully tagged clowder/extractors-simple-extractor-python3:onbuild |
30-May-2019 17:22:33 | Sending build context to Docker daemon 13.31kB |
30-May-2019 17:22:33 | |
30-May-2019 17:22:33 | Step 1/10 : FROM clowder/pyclowder:latest |
30-May-2019 17:22:33 | ---> 7a2aeedaf8f3 |
30-May-2019 17:22:33 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 0fff788d0e05 |
30-May-2019 17:22:33 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 1580967a3d6b |
30-May-2019 17:22:33 | Step 4/10 : COPY r_extractor.py launcher.R /home/clowder/ |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 3f1be02847af |
30-May-2019 17:22:33 | Step 5/10 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 742bd9c4a234 |
30-May-2019 17:22:33 | Step 6/10 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> b44cbd59e366 |
30-May-2019 17:22:33 | Step 7/10 : ONBUILD COPY docker.R* Dockerfile /home/clowder/ |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> da2d45afa047 |
30-May-2019 17:22:33 | Step 8/10 : ONBUILD RUN if [ -e docker.R ]; then Rscript docker.R; fi |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 54594fbcc211 |
30-May-2019 17:22:33 | Step 9/10 : ONBUILD ADD . /home/clowder/ |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> c2775c312c46 |
30-May-2019 17:22:33 | Step 10/10 : CMD python r_extractor.py |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 43b156631f5f |
30-May-2019 17:22:33 | [Warning] One or more build-args [PYTHON_VERSION] were not consumed |
30-May-2019 17:22:33 | Successfully built 43b156631f5f |
30-May-2019 17:22:33 | Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild |
30-May-2019 17:22:33 | Sending build context to Docker daemon 9.216kB |
30-May-2019 17:22:33 | |
30-May-2019 17:22:33 | Step 1/2 : FROM clowder/pyclowder:onbuild |
30-May-2019 17:22:33 | # Executing 5 build triggers |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 20ca3c35577f |
30-May-2019 17:22:33 | Step 2/2 : ENV MAIN_SCRIPT="wordcount.py" |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> b207dae955bd |
30-May-2019 17:22:33 | Successfully built b207dae955bd |
30-May-2019 17:22:33 | Successfully tagged clowder/extractors-wordcount:latest |
30-May-2019 17:22:33 | Sending build context to Docker daemon 5.12kB |
30-May-2019 17:22:33 | |
30-May-2019 17:22:33 | Step 1/3 : FROM clowder/extractors-simple-extractor:onbuild |
30-May-2019 17:22:33 | # Executing 5 build triggers |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 685b6858cc86 |
30-May-2019 17:22:33 | Step 2/3 : ENV EXTRACTION_FUNC="wordcount" |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> cda1d51fdf81 |
30-May-2019 17:22:33 | Step 3/3 : ENV EXTRACTION_MODULE="wordcount" |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 99bf4318ff2f |
30-May-2019 17:22:33 | Successfully built 99bf4318ff2f |
30-May-2019 17:22:33 | Successfully tagged clowder/extractors-wordcount-simple-extractor:latest |
30-May-2019 17:22:33 | Sending build context to Docker daemon 5.12kB |
30-May-2019 17:22:33 | |
30-May-2019 17:22:33 | Step 1/2 : FROM clowder/extractors-simple-r-extractor:onbuild |
30-May-2019 17:22:33 | # Executing 5 build triggers |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> f1ed202438ef |
30-May-2019 17:22:33 | Step 2/2 : ENV R_SCRIPT="wordcount.R" R_FUNCTION="process_file" |
30-May-2019 17:22:33 | ---> Using cache |
30-May-2019 17:22:33 | ---> 8eead3ada810 |
30-May-2019 17:22:33 | Successfully built 8eead3ada810 |
30-May-2019 17:22:34 | Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest |
30-May-2019 17:22:34 | Sending build context to Docker daemon 8.192kB |
30-May-2019 17:22:34 | |
30-May-2019 17:22:34 | Step 1/7 : FROM python:3.5 |
30-May-2019 17:22:34 | ---> 74a0040526f9 |
30-May-2019 17:22:34 | Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F" |
30-May-2019 17:22:34 | ---> Using cache |
30-May-2019 17:22:34 | ---> 0f4f82f9baad |
30-May-2019 17:22:34 | Step 3/7 : EXPOSE 9999 |
30-May-2019 17:22:34 | ---> Using cache |
30-May-2019 17:22:34 | ---> c3ca695b477b |
30-May-2019 17:22:34 | Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4 |
30-May-2019 17:22:34 | ---> Using cache |
30-May-2019 17:22:34 | ---> c98c56290cba |
30-May-2019 17:22:34 | Step 5/7 : WORKDIR /src |
30-May-2019 17:22:34 | ---> Using cache |
30-May-2019 17:22:34 | ---> e913ab5e48c6 |
30-May-2019 17:22:34 | Step 6/7 : COPY monitor.py /src/ |
30-May-2019 17:22:34 | ---> Using cache |
30-May-2019 17:22:34 | ---> 967411183950 |
30-May-2019 17:22:34 | Step 7/7 : CMD python monitor.py |
30-May-2019 17:22:34 | ---> Using cache |
30-May-2019 17:22:34 | ---> bcf6c5a97b9a |
30-May-2019 17:22:34 | Successfully built bcf6c5a97b9a |
30-May-2019 17:22:34 | Successfully tagged clowder/extractors-monitor:latest |
30-May-2019 17:22:34 | Finished task 'docker push' with result: Success |
30-May-2019 17:22:34 | Starting task 'test results' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.junit' |
30-May-2019 17:22:34 | Parsing test results under /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC299-JOB1... |
30-May-2019 17:22:34 | Finished task 'test results' with result: Success |
30-May-2019 17:22:34 | Running post build plugin 'Docker Container Cleanup' |
30-May-2019 17:22:34 | Running post build plugin 'NCover Results Collector' |
30-May-2019 17:22:34 | Running post build plugin 'Clover Results Collector' |
30-May-2019 17:22:34 | Running post build plugin 'npm Cache Cleanup' |
30-May-2019 17:22:34 | Running post build plugin 'Artifact Copier' |
30-May-2019 17:22:34 | Finalising the build... |
30-May-2019 17:22:34 | Stopping timer. |
30-May-2019 17:22:34 | Build CATS-PYC299-JOB1-1 completed. |
30-May-2019 17:22:34 | Running on server: post build plugin 'NCover Results Collector' |
30-May-2019 17:22:34 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
30-May-2019 17:22:34 | Running on server: post build plugin 'Clover Delta Calculator' |
30-May-2019 17:22:34 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
30-May-2019 17:22:34 | All post build plugins have finished |
30-May-2019 17:22:34 | Generating build results summary... |
30-May-2019 17:22:34 | Saving build results to disk... |
30-May-2019 17:22:34 | Logging substituted variables... |
30-May-2019 17:22:34 | Indexing build results... |
30-May-2019 17:22:34 | Finished building CATS-PYC299-JOB1-1. |