Build #2

Plan branch:

Build: #2 was successful

Job: Default Job was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 435 lines of output. Download or view full build log.

29-Sep-2019 19:48:04 Build Clowder - pyclowder - develop - Default Job #2 (CATS-PYC32-JOB1-2) started building on agent buildserver-2.os.ncsa.edu
29-Sep-2019 19:48:04 Remote agent on host buildserver-2.os.ncsa.edu
29-Sep-2019 19:48:04 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC32-JOB1
29-Sep-2019 19:48:04 Executing build Clowder - pyclowder - develop - Default Job #2 (CATS-PYC32-JOB1-2)
29-Sep-2019 19:48:04 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
29-Sep-2019 19:48:04 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC32-JOB1
29-Sep-2019 19:48:04 Updating source code to revision: 0b3e2e8f213e3b233245a9867ffb5e152ee05de3
29-Sep-2019 19:48:04 Enforcing full fetch as requested revision has not been found on the configured branch
29-Sep-2019 19:48:04 Fetching 'refs/heads/*' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch.
29-Sep-2019 19:48:04 Warning: Permanently added '[127.0.0.1]:39245' (RSA) to the list of known hosts.
29-Sep-2019 19:48:04 From ssh://127.0.0.1:39245/cats/pyclowder
29-Sep-2019 19:48:04 * [new branch]      Add-redirect-option -> Add-redirect-option
29-Sep-2019 19:48:04 * [new branch]      CATS-784-python3-compatible -> CATS-784-python3-compatible
29-Sep-2019 19:48:04 * [new branch]      CATSPYC-19-add-anonymous-email-receiver-on-the-email-message -> CATSPYC-19-add-anonymous-email-receiver-on-the-email-message
29-Sep-2019 19:48:04 * [new branch]      SYN-63-Remove-data-from-geoserver -> SYN-63-Remove-data-from-geoserver
29-Sep-2019 19:48:04 * [new branch]      add-get-or-create-methods -> add-get-or-create-methods
29-Sep-2019 19:48:04 * [new branch]      add-sphinx-docs -> add-sphinx-docs
29-Sep-2019 19:48:04 * [new branch]      boxhack    -> boxhack
29-Sep-2019 19:48:04 * [new branch]      bugfix/BD-2344-update-pip-in-simple-extractor-wrapper -> bugfix/BD-2344-update-pip-in-simple-extractor-wrapper
29-Sep-2019 19:48:04 * [new branch]      bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding -> bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding
29-Sep-2019 19:48:04 * [new branch]      bugfix/CATS-729-copy-dataset-extractor-fix -> bugfix/CATS-729-copy-dataset-extractor-fix
29-Sep-2019 19:48:04 * [new branch]      bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update -> bugfix/GLGVO-343-parser-vm-spawning-many-jobs-update
29-Sep-2019 19:48:04 * [new branch]      check_duplicate-flag -> check_duplicate-flag
29-Sep-2019 19:48:04 * [new branch]      clowder-clients-clean -> clowder-clients-clean
29-Sep-2019 19:48:04 + 727b1d7...0b3e2e8 develop    -> develop  (forced update)
29-Sep-2019 19:48:04 * [new branch]      extractor-bugfix -> extractor-bugfix
29-Sep-2019 19:48:04 * [new branch]      feature/GEOD-927-fix-add-test-for-pyclowder2-geostreams -> feature/GEOD-927-fix-add-test-for-pyclowder2-geostreams
29-Sep-2019 19:48:04 * [new branch]      geostreams -> geostreams
29-Sep-2019 19:48:04 * [new branch]      hotfix/extractor-info.json -> hotfix/extractor-info.json
29-Sep-2019 19:48:04 * [new branch]      master     -> master
29-Sep-2019 19:48:04 * [new branch]      rename_functions -> rename_functions
29-Sep-2019 19:48:04 * [new branch]      seven-miles-changes -> seven-miles-changes
29-Sep-2019 19:48:04 * [new tag]         2.0.2      -> 2.0.2
29-Sep-2019 19:48:04 * [new tag]         v2.0.3     -> v2.0.3
29-Sep-2019 19:48:04 * [new tag]         v2.1.0     -> v2.1.0
29-Sep-2019 19:48:04 * [new tag]         v2.1.1     -> v2.1.1
29-Sep-2019 19:48:04 * [new tag]         v2.2.0     -> v2.2.0
29-Sep-2019 19:48:04 * [new tag]         v2.2.2     -> v2.2.2
29-Sep-2019 19:48:04 Checking out revision 0b3e2e8f213e3b233245a9867ffb5e152ee05de3.
29-Sep-2019 19:48:04 Already on 'develop'
29-Sep-2019 19:48:04 Updated source code to revision: 0b3e2e8f213e3b233245a9867ffb5e152ee05de3
29-Sep-2019 19:48:04 Finished task 'Checkout Default Repository' with result: Success
29-Sep-2019 19:48:04 Running pre-build action: VCS Version Collector
29-Sep-2019 19:48:04 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
29-Sep-2019 19:48:04
Beginning to execute external process for build 'Clowder - pyclowder - develop - Default Job #2 (CATS-PYC32-JOB1-2)'
... running command line:
/bin/sh docker.sh
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC32-JOB1
... using extra environment variables:
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bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node
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bamboo_planRepository_1_branchDisplayName=develop
bamboo_repository_revision_number=0b3e2e8f213e3b233245a9867ffb5e152ee05de3
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bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC32-JOB1
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bamboo_buildNumber=2
bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt
bamboo_repository_177831947_branch_name=develop
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bamboo_shortJobKey=JOB1
bamboo_planRepository_revision=0b3e2e8f213e3b233245a9867ffb5e152ee05de3
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bamboo_repository_previous_revision_number=727b1d7f7657d2cc231ec2a623577d79454b25ec
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
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bamboo_repository_git_branch=develop
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bamboo_planRepository_1_revision=0b3e2e8f213e3b233245a9867ffb5e152ee05de3
bamboo_capability_system_builder_command_python3=/usr/bin/python3
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bamboo_planRepository_branch=develop
bamboo_repository_177831947_name=pyclowder
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
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bamboo_capability_system_git_executable=/usr/bin/git
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bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_software_mongo=/usr/bin/mongo
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bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66
bamboo_planRepository_1_username=
bamboo_planRepository_type=bbserver
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bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9
bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC32-JOB1
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bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git
bamboo_planRepository_username=
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_1_branchName=develop
29-Sep-2019 19:48:05 Sending build context to Docker daemon  267.8kB
29-Sep-2019 19:48:05
29-Sep-2019 19:48:05 Step 1/10 : FROM ubuntu:16.04
29-Sep-2019 19:48:05 ---> 657d80a6401d
29-Sep-2019 19:48:05 Step 2/10 : ARG PYTHON_VERSION="2.7"
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 7d071fce2822
29-Sep-2019 19:48:05 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION}     RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 6d4fba816a1e
29-Sep-2019 19:48:05 Step 4/10 : RUN apt-get -q -q update     && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl     && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi     && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py     && python /tmp/get-pip.py     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 120aa51655ff
29-Sep-2019 19:48:05 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 6d76b3beb121
29-Sep-2019 19:48:05 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 860cbc248fe1
29-Sep-2019 19:48:05 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 62eafaf985b6
29-Sep-2019 19:48:05 Step 8/10 : WORKDIR /home/clowder
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 3489a864819b
29-Sep-2019 19:48:05 Step 9/10 : COPY notifications.json /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 54a193a02c9b
29-Sep-2019 19:48:05 Step 10/10 : CMD python "./${MAIN_SCRIPT}"
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> dd7058a2620a
29-Sep-2019 19:48:05 Successfully built dd7058a2620a
29-Sep-2019 19:48:05 Successfully tagged clowder/pyclowder:latest
29-Sep-2019 19:48:05 Sending build context to Docker daemon  265.7kB
29-Sep-2019 19:48:05
29-Sep-2019 19:48:05 Step 1/7 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:05 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest
29-Sep-2019 19:48:05 ---> dd7058a2620a
29-Sep-2019 19:48:05 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 7a85fa61aaf7
29-Sep-2019 19:48:05 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> d31de910b23f
29-Sep-2019 19:48:05 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> a127f8631bf4
29-Sep-2019 19:48:05 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 31a54614f4f4
29-Sep-2019 19:48:05 Step 7/7 : ONBUILD ADD . /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 85b511f58633
29-Sep-2019 19:48:05 Successfully built 85b511f58633
29-Sep-2019 19:48:05 Successfully tagged clowder/pyclowder:onbuild
29-Sep-2019 19:48:05 Sending build context to Docker daemon   12.8kB
29-Sep-2019 19:48:05
29-Sep-2019 19:48:05 Step 1/6 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:05 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild
29-Sep-2019 19:48:05 # Executing 5 build triggers
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 4c2524540888
29-Sep-2019 19:48:05 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py"     RABBITMQ_QUEUE=""     IMAGE_BINARY=""     IMAGE_TYPE=""     IMAGE_THUMBNAIL_COMMAND=""     IMAGE_PREVIEW_COMMAND=""     PREVIEW_BINARY=""     PREVIEW_TYPE=""     PREVIEW_COMMAND=""
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 845cdb818202
29-Sep-2019 19:48:05 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> ced1525ab9d4
29-Sep-2019 19:48:05 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> e12ec7dd47a4
29-Sep-2019 19:48:05 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> c018300631b2
29-Sep-2019 19:48:05 Successfully built c018300631b2
29-Sep-2019 19:48:05 Successfully tagged clowder/extractors-binary-preview:onbuild
29-Sep-2019 19:48:05 Sending build context to Docker daemon  6.656kB
29-Sep-2019 19:48:05
29-Sep-2019 19:48:05 Step 1/11 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:05 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest
29-Sep-2019 19:48:05 ---> dd7058a2620a
29-Sep-2019 19:48:05 Step 3/11 : ENV EXTRACTION_FUNC=""
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 5ec3bcc0f133
29-Sep-2019 19:48:05 Step 4/11 : ENV EXTRACTION_MODULE=""
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 8f744f833e01
29-Sep-2019 19:48:05 Step 5/11 : COPY simple_extractor.py .
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 54ad9dd74034
29-Sep-2019 19:48:05 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 15386f72c1de
29-Sep-2019 19:48:05 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 1d3529747c3f
29-Sep-2019 19:48:05 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 6e906ddef1eb
29-Sep-2019 19:48:05 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> d455c2a07b85
29-Sep-2019 19:48:05 Step 10/11 : ONBUILD ADD . /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> fd992774021c
29-Sep-2019 19:48:05 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> e1c0f4dce633
29-Sep-2019 19:48:05 Successfully built e1c0f4dce633
29-Sep-2019 19:48:05 Successfully tagged clowder/extractors-simple-extractor:onbuild
29-Sep-2019 19:48:05 Sending build context to Docker daemon  13.31kB
29-Sep-2019 19:48:05
29-Sep-2019 19:48:05 Step 1/11 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:05 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest
29-Sep-2019 19:48:05 ---> dd7058a2620a
29-Sep-2019 19:48:05 Step 3/11 : ENV R_SCRIPT=""     R_FUNCTION=""
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 7e0269fcd318
29-Sep-2019 19:48:05 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> eb86c380f98c
29-Sep-2019 19:48:05 Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 7fd806a6b3c4
29-Sep-2019 19:48:05 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 2583e497a0e8
29-Sep-2019 19:48:05 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> f2b28b70c6d5
29-Sep-2019 19:48:05 Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> a99f1906b661
29-Sep-2019 19:48:05 Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> ba5f0a968440
29-Sep-2019 19:48:05 Step 10/11 : ONBUILD ADD . /home/clowder/
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> a15d3dfaaf94
29-Sep-2019 19:48:05 Step 11/11 : CMD python r_extractor.py
29-Sep-2019 19:48:05 ---> Using cache
29-Sep-2019 19:48:05 ---> 0dc22bddc90f
29-Sep-2019 19:48:05 Successfully built 0dc22bddc90f
29-Sep-2019 19:48:05 Successfully tagged clowder/extractors-simple-r-extractor:onbuild
29-Sep-2019 19:48:06 Sending build context to Docker daemon  267.8kB
29-Sep-2019 19:48:06
29-Sep-2019 19:48:06 Step 1/10 : FROM ubuntu:16.04
29-Sep-2019 19:48:06 ---> 657d80a6401d
29-Sep-2019 19:48:06 Step 2/10 : ARG PYTHON_VERSION="2.7"
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 7d071fce2822
29-Sep-2019 19:48:06 Step 3/10 : ENV PYTHON_VERSION=${PYTHON_VERSION}     RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> f6fbf60fc5c0
29-Sep-2019 19:48:06 Step 4/10 : RUN apt-get -q -q update     && apt-get install -y --no-install-recommends python${PYTHON_VERSION} curl     && if [ ! -e /usr/bin/python ]; then ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python; fi     && curl -k https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py     && python /tmp/get-pip.py     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/* /tmp/get-pip.py
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> f1bc58800597
29-Sep-2019 19:48:06 Step 5/10 : COPY pyclowder /tmp/pyclowder/pyclowder
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 597c3f5e2968
29-Sep-2019 19:48:06 Step 6/10 : COPY setup.py description.rst /tmp/pyclowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 21751dcbe393
29-Sep-2019 19:48:06 Step 7/10 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 9cb08c3eb887
29-Sep-2019 19:48:06 Step 8/10 : WORKDIR /home/clowder
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 56066ba6ea87
29-Sep-2019 19:48:06 Step 9/10 : COPY notifications.json /home/clowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 1708a9940a2a
29-Sep-2019 19:48:06 Step 10/10 : CMD python "./${MAIN_SCRIPT}"
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 4e0a5b6aa8a3
29-Sep-2019 19:48:06 Successfully built 4e0a5b6aa8a3
29-Sep-2019 19:48:06 Successfully tagged clowder/pyclowder-python3:latest
29-Sep-2019 19:48:06 Sending build context to Docker daemon  265.7kB
29-Sep-2019 19:48:06
29-Sep-2019 19:48:06 Step 1/7 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:06 Step 2/7 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest
29-Sep-2019 19:48:06 ---> 4e0a5b6aa8a3
29-Sep-2019 19:48:06 Step 3/7 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 66ecf93f77a4
29-Sep-2019 19:48:06 Step 4/7 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> e466cf6346ef
29-Sep-2019 19:48:06 Step 5/7 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> ad4c2be545c8
29-Sep-2019 19:48:06 Step 6/7 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> b31c60631fa8
29-Sep-2019 19:48:06 Step 7/7 : ONBUILD ADD . /home/clowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 1027a3d0825a
29-Sep-2019 19:48:06 Successfully built 1027a3d0825a
29-Sep-2019 19:48:06 Successfully tagged clowder/pyclowder-python3:onbuild
29-Sep-2019 19:48:06 Sending build context to Docker daemon   12.8kB
29-Sep-2019 19:48:06
29-Sep-2019 19:48:06 Step 1/6 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:06 Step 2/6 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild
29-Sep-2019 19:48:06 # Executing 5 build triggers
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> b3f1064f0640
29-Sep-2019 19:48:06 Step 3/6 : ENV MAIN_SCRIPT="binary_extractor.py"     RABBITMQ_QUEUE=""     IMAGE_BINARY=""     IMAGE_TYPE=""     IMAGE_THUMBNAIL_COMMAND=""     IMAGE_PREVIEW_COMMAND=""     PREVIEW_BINARY=""     PREVIEW_TYPE=""     PREVIEW_COMMAND=""
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 6b0049c301d4
29-Sep-2019 19:48:06 Step 4/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 6123aff22e13
29-Sep-2019 19:48:06 Step 5/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> ec70c8469c80
29-Sep-2019 19:48:06 Step 6/6 : ONBUILD COPY extractor_info.json /home/clowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> f566c3ef3474
29-Sep-2019 19:48:06 Successfully built f566c3ef3474
29-Sep-2019 19:48:06 Successfully tagged clowder/extractors-binary-preview-python3:onbuild
29-Sep-2019 19:48:06 Sending build context to Docker daemon  6.656kB
29-Sep-2019 19:48:06
29-Sep-2019 19:48:06 Step 1/11 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:06 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest
29-Sep-2019 19:48:06 ---> 4e0a5b6aa8a3
29-Sep-2019 19:48:06 Step 3/11 : ENV EXTRACTION_FUNC=""
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 3ae37fd01aa4
29-Sep-2019 19:48:06 Step 4/11 : ENV EXTRACTION_MODULE=""
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> b81bd25614b6
29-Sep-2019 19:48:06 Step 5/11 : COPY simple_extractor.py .
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 973592e3e7e2
29-Sep-2019 19:48:06 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 30739eac93b0
29-Sep-2019 19:48:06 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 779d1a7c719b
29-Sep-2019 19:48:06 Step 8/11 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 5ccfda9c9dcc
29-Sep-2019 19:48:06 Step 9/11 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> e6754308238b
29-Sep-2019 19:48:06 Step 10/11 : ONBUILD ADD . /home/clowder/
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 6bb00e7c3b74
29-Sep-2019 19:48:06 Step 11/11 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
29-Sep-2019 19:48:06 ---> Using cache
29-Sep-2019 19:48:06 ---> 2d62b6b3d71c
29-Sep-2019 19:48:06 Successfully built 2d62b6b3d71c
29-Sep-2019 19:48:07 Successfully tagged clowder/extractors-simple-extractor-python3:onbuild
29-Sep-2019 19:48:07 Sending build context to Docker daemon  13.31kB
29-Sep-2019 19:48:07
29-Sep-2019 19:48:07 Step 1/11 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:07 Step 2/11 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:latest
29-Sep-2019 19:48:07 ---> 4e0a5b6aa8a3
29-Sep-2019 19:48:07 Step 3/11 : ENV R_SCRIPT=""     R_FUNCTION=""
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> 63579f8b2a95
29-Sep-2019 19:48:07 Step 4/11 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> b188d7e98305
29-Sep-2019 19:48:07 Step 5/11 : COPY r_extractor.py launcher.R /home/clowder/
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> ca0d6f759af1
29-Sep-2019 19:48:07 Step 6/11 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> 2febded5a55d
29-Sep-2019 19:48:07 Step 7/11 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> 03ddd40d9f7a
29-Sep-2019 19:48:07 Step 8/11 : ONBUILD COPY docker.R* Dockerfile /home/clowder/
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> 973620bd7ad3
29-Sep-2019 19:48:07 Step 9/11 : ONBUILD RUN if [ -e docker.R ]; then                 Rscript docker.R;             fi
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> e000d0bef514
29-Sep-2019 19:48:07 Step 10/11 : ONBUILD ADD . /home/clowder/
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> c9e4c02a38dc
29-Sep-2019 19:48:07 Step 11/11 : CMD python r_extractor.py
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> ffb662004f5f
29-Sep-2019 19:48:07 Successfully built ffb662004f5f
29-Sep-2019 19:48:07 Successfully tagged clowder/extractors-simple-r-extractor-python3:onbuild
29-Sep-2019 19:48:07 Sending build context to Docker daemon  9.216kB
29-Sep-2019 19:48:07
29-Sep-2019 19:48:07 Step 1/3 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:07 Step 2/3 : FROM clowder/pyclowder${PYCLOWDER_PYTHON}:onbuild
29-Sep-2019 19:48:07 # Executing 5 build triggers
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> 7bfedae08fe2
29-Sep-2019 19:48:07 Step 3/3 : ENV MAIN_SCRIPT="wordcount.py"
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> f3d37a75c60d
29-Sep-2019 19:48:07 Successfully built f3d37a75c60d
29-Sep-2019 19:48:07 Successfully tagged clowder/extractors-wordcount:latest
29-Sep-2019 19:48:07 Sending build context to Docker daemon   5.12kB
29-Sep-2019 19:48:07
29-Sep-2019 19:48:07 Step 1/4 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:07 Step 2/4 : FROM clowder/extractors-simple-extractor${PYCLOWDER_PYTHON}:onbuild
29-Sep-2019 19:48:07 # Executing 5 build triggers
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> d8bc2bd30019
29-Sep-2019 19:48:07 Step 3/4 : ENV EXTRACTION_FUNC="wordcount"
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> e4ee5dc93504
29-Sep-2019 19:48:07 Step 4/4 : ENV EXTRACTION_MODULE="wordcount"
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> c88d1c3b8999
29-Sep-2019 19:48:07 Successfully built c88d1c3b8999
29-Sep-2019 19:48:07 Successfully tagged clowder/extractors-wordcount-simple-extractor:latest
29-Sep-2019 19:48:07 Sending build context to Docker daemon   5.12kB
29-Sep-2019 19:48:07
29-Sep-2019 19:48:07 Step 1/3 : ARG PYCLOWDER_PYTHON=""
29-Sep-2019 19:48:07 Step 2/3 : FROM clowder/extractors-simple-r-extractor${PYCLOWDER_PYTHON}:onbuild
29-Sep-2019 19:48:07 # Executing 5 build triggers
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> dbbfd93ab5e7
29-Sep-2019 19:48:07 Step 3/3 : ENV R_SCRIPT="wordcount.R"     R_FUNCTION="process_file"
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> f17ed902f072
29-Sep-2019 19:48:07 Successfully built f17ed902f072
29-Sep-2019 19:48:07 Successfully tagged clowder/extractors-wordcount-simple-r-extractor:latest
29-Sep-2019 19:48:07 Sending build context to Docker daemon  8.192kB
29-Sep-2019 19:48:07
29-Sep-2019 19:48:07 Step 1/7 : FROM python:3.5
29-Sep-2019 19:48:07 ---> 67f4589d3c88
29-Sep-2019 19:48:07 Step 2/7 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq/%2F"
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> 780c06a38965
29-Sep-2019 19:48:07 Step 3/7 : EXPOSE 9999
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> e35b498b2fe3
29-Sep-2019 19:48:07 Step 4/7 : RUN pip install pika==0.11.2 requests==2.18.4
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> bc90da966d93
29-Sep-2019 19:48:07 Step 5/7 : WORKDIR /src
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> c4f7ae366418
29-Sep-2019 19:48:07 Step 6/7 : COPY monitor.py /src/
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> f20e0c8c8326
29-Sep-2019 19:48:07 Step 7/7 : CMD python monitor.py
29-Sep-2019 19:48:07 ---> Using cache
29-Sep-2019 19:48:07 ---> ea2efd4a43d1
29-Sep-2019 19:48:07 Successfully built ea2efd4a43d1
29-Sep-2019 19:48:07 Successfully tagged clowder/extractors-monitor:latest
29-Sep-2019 19:48:07 Finished task 'docker build and push' with result: Success
29-Sep-2019 19:48:07 Running post build plugin 'Docker Container Cleanup'
29-Sep-2019 19:48:07 Running post build plugin 'NCover Results Collector'
29-Sep-2019 19:48:07 Running post build plugin 'Clover Results Collector'
29-Sep-2019 19:48:07 Running post build plugin 'npm Cache Cleanup'
29-Sep-2019 19:48:07 Running post build plugin 'Artifact Copier'
29-Sep-2019 19:48:07 Finalising the build...
29-Sep-2019 19:48:07 Stopping timer.
29-Sep-2019 19:48:07 Build CATS-PYC32-JOB1-2 completed.
29-Sep-2019 19:48:07 Running on server: post build plugin 'NCover Results Collector'
29-Sep-2019 19:48:07 Running on server: post build plugin 'Build Hanging Detection Configuration'
29-Sep-2019 19:48:07 Running on server: post build plugin 'Clover Delta Calculator'
29-Sep-2019 19:48:07 Running on server: post build plugin 'Maven Dependencies Postprocessor'
29-Sep-2019 19:48:07 All post build plugins have finished
29-Sep-2019 19:48:07 Generating build results summary...
29-Sep-2019 19:48:07 Saving build results to disk...
29-Sep-2019 19:48:08 Logging substituted variables...
29-Sep-2019 19:48:08 Indexing build results...
29-Sep-2019 19:48:08 Finished building CATS-PYC32-JOB1-2.