Build: #1 failed
Job: Default Job failed
Build log
The build generated 333 lines of output. Download or view full build log.
| 29-Sep-2019 15:29:45 | Build Clowder - pyclowder - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding - Default Job #1 (CATS-PYC37-JOB1-1) started building on agent buildserver-2.os.ncsa.edu |
| 29-Sep-2019 15:29:45 | Remote agent on host buildserver-2.os.ncsa.edu |
| 29-Sep-2019 15:29:45 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC37-JOB1 |
| 29-Sep-2019 15:29:45 | Executing build Clowder - pyclowder - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding - Default Job #1 (CATS-PYC37-JOB1-1) |
| 29-Sep-2019 15:29:45 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 29-Sep-2019 15:29:45 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC37-JOB1 |
| 29-Sep-2019 15:29:45 | Updating source code to revision: a54e1410f4217209bc72e2af5b2266ead7d08a0d |
| 29-Sep-2019 15:29:45 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC37-JOB1/.git'. |
| 29-Sep-2019 15:29:45 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC37-JOB1/.git/ |
| 29-Sep-2019 15:29:45 | Fetching 'refs/heads/bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch. |
| 29-Sep-2019 15:29:45 | Warning: Permanently added '[127.0.0.1]:39245' (RSA) to the list of known hosts. |
| 29-Sep-2019 15:29:45 | From ssh://127.0.0.1:39245/cats/pyclowder |
| 29-Sep-2019 15:29:45 | * [new branch] bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding -> bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding |
| 29-Sep-2019 15:29:45 | Checking out revision a54e1410f4217209bc72e2af5b2266ead7d08a0d. |
| 29-Sep-2019 15:29:45 | Switched to branch 'bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding' |
| 29-Sep-2019 15:29:45 | Updated source code to revision: a54e1410f4217209bc72e2af5b2266ead7d08a0d |
| 29-Sep-2019 15:29:45 | Finished task 'Checkout Default Repository' with result: Success |
| 29-Sep-2019 15:29:45 | Running pre-build action: VCS Version Collector |
| 29-Sep-2019 15:29:45 | Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 29-Sep-2019 15:29:45 | Beginning to execute external process for build 'Clowder - pyclowder - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding - Default Job #1 (CATS-PYC37-JOB1-1)' ... running command line: /bin/sh docker.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC37-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_repository_revision_number=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC37-JOB1-1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC37-JOB1 bamboo_planRepository_1_name=pyclowder bamboo_buildKey=CATS-PYC37-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=pyclowder bamboo_planRepository_name=pyclowder bamboo_repository_177831953_git_username= bamboo_buildNumber=1 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC37-JOB1-1 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_agentId=140673028 bamboo_planName=Clowder - pyclowder - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_repository_177831953_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_shortPlanKey=PYC37 bamboo_repository_177831953_branch_name=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_repository_177831953_revision_number=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_planRepository_revision=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_repository_previous_revision_number=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_buildTimeStamp=2019-09-28T10:50:39.233-05:00 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_planRepository_previousRevision=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_repository_git_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_buildResultKey=CATS-PYC37-JOB1-1 bamboo_repository_branch_name=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_repository_177831953_previous_revision_number=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_buildPlanName=Clowder - pyclowder - bugfix-BD-2345-open-extractor-info-json-with-utf-8-encoding - Default Job bamboo_repository_177831953_name=pyclowder bamboo_planRepository_1_revision=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=pyclowder bamboo_repository_177831953_git_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=a54e1410f4217209bc72e2af5b2266ead7d08a0d bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-177700881 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC37-JOB1 bamboo_planKey=CATS-PYC37 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_planRepository_1_branchName=bugfix/BD-2345-open-extractor-info-json-with-utf-8-encoding |
| 29-Sep-2019 15:29:45 | Sending build context to Docker daemon 264.2kB |
| 29-Sep-2019 15:29:45 | |
| 29-Sep-2019 15:29:45 | Step 1/9 : FROM ubuntu:16.04 |
| 29-Sep-2019 15:29:45 | ---> 657d80a6401d |
| 29-Sep-2019 15:29:45 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="extractor" MAIN_SCRIPT="" |
| 29-Sep-2019 15:29:45 | ---> Using cache |
| 29-Sep-2019 15:29:45 | ---> d0185d2a2449 |
| 29-Sep-2019 15:29:45 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 29-Sep-2019 15:29:45 | ---> Using cache |
| 29-Sep-2019 15:29:45 | ---> 46cac4521d03 |
| 29-Sep-2019 15:29:45 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 29-Sep-2019 15:29:46 | ---> 29fe5ae002b9 |
| 29-Sep-2019 15:29:46 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 29-Sep-2019 15:29:46 | ---> 24e2cd11570e |
| 29-Sep-2019 15:29:46 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 29-Sep-2019 15:29:46 | ---> Running in 688f81de7ee2 |
| 29-Sep-2019 15:29:48 | Processing /tmp/pyclowder |
| 29-Sep-2019 15:29:48 | Collecting enum34==1.1.6 (from pyclowder===2.1.1) |
| 29-Sep-2019 15:29:49 | Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl |
| 29-Sep-2019 15:29:49 | Collecting pika==1.0.0 (from pyclowder===2.1.1) |
| 29-Sep-2019 15:29:49 | Downloading https://files.pythonhosted.org/packages/53/a4/5aff2293e1cdcf5f77447ebdfeaac99b622aef7d1e723cf9a5fe317b077c/pika-1.0.0-py2.py3-none-any.whl (148kB) |
| 29-Sep-2019 15:29:49 | Collecting PyYAML==5.1 (from pyclowder===2.1.1) |
| 29-Sep-2019 15:29:49 | Downloading https://files.pythonhosted.org/packages/9f/2c/9417b5c774792634834e730932745bc09a7d36754ca00acf1ccd1ac2594d/PyYAML-5.1.tar.gz (274kB) |
| 29-Sep-2019 15:29:49 | Collecting requests==2.21.0 (from pyclowder===2.1.1) |
| 29-Sep-2019 15:29:49 | Downloading https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl (57kB) |
| 29-Sep-2019 15:29:49 | Collecting certifi>=2017.4.17 (from requests==2.21.0->pyclowder===2.1.1) |
| 29-Sep-2019 15:29:49 | Downloading https://files.pythonhosted.org/packages/18/b0/8146a4f8dd402f60744fa380bc73ca47303cccf8b9190fd16a827281eac2/certifi-2019.9.11-py2.py3-none-any.whl (154kB) |
| 29-Sep-2019 15:29:49 | Collecting chardet<3.1.0,>=3.0.2 (from requests==2.21.0->pyclowder===2.1.1) |
| 29-Sep-2019 15:29:49 | Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) |
| 29-Sep-2019 15:29:49 | Collecting idna<2.9,>=2.5 (from requests==2.21.0->pyclowder===2.1.1) |
| 29-Sep-2019 15:29:49 | Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB) |
| 29-Sep-2019 15:29:49 | Collecting urllib3<1.25,>=1.21.1 (from requests==2.21.0->pyclowder===2.1.1) |
| 29-Sep-2019 15:29:50 | Downloading https://files.pythonhosted.org/packages/01/11/525b02e4acc0c747de8b6ccdab376331597c569c42ea66ab0a1dbd36eca2/urllib3-1.24.3-py2.py3-none-any.whl (118kB) |
| 29-Sep-2019 15:29:50 | Building wheels for collected packages: PyYAML |
| 29-Sep-2019 15:29:50 | Running setup.py bdist_wheel for PyYAML: started |
| 29-Sep-2019 15:29:50 | Running setup.py bdist_wheel for PyYAML: finished with status 'error' |
| 29-Sep-2019 15:29:50 | Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-dOXQYp/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpMyWMHFpip-wheel- --python-tag cp27: |
| 29-Sep-2019 15:29:50 | usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] |
| 29-Sep-2019 15:29:50 | or: -c --help [cmd1 cmd2 ...] |
| 29-Sep-2019 15:29:50 | or: -c --help-commands |
| 29-Sep-2019 15:29:50 | or: -c cmd --help |
| 29-Sep-2019 15:29:50 | |
| 29-Sep-2019 15:29:50 | error: invalid command 'bdist_wheel' |
| 29-Sep-2019 15:29:50 | |
| 29-Sep-2019 15:29:50 | ---------------------------------------- |
| 29-Sep-2019 15:29:50 | Failed building wheel for PyYAML |
| 29-Sep-2019 15:29:50 | Running setup.py clean for PyYAML |
| 29-Sep-2019 15:29:50 | Failed to build PyYAML |
| 29-Sep-2019 15:29:50 | Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder |
| 29-Sep-2019 15:29:50 | Running setup.py install for PyYAML: started |
| 29-Sep-2019 15:29:50 | Running setup.py install for PyYAML: finished with status 'done' |
| 29-Sep-2019 15:29:50 | Running setup.py install for pyclowder: started |
| 29-Sep-2019 15:29:51 | Running setup.py install for pyclowder: finished with status 'done' |
| 29-Sep-2019 15:29:51 | Successfully installed PyYAML-5.1 certifi-2019.9.11 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-2.1.1 requests-2.21.0 urllib3-1.24.3 |
| 29-Sep-2019 15:29:51 | You are using pip version 8.1.1, however version 19.2.3 is available. |
| 29-Sep-2019 15:29:51 | You should consider upgrading via the 'pip install --upgrade pip' command. |
| 29-Sep-2019 15:29:52 | Removing intermediate container 688f81de7ee2 |
| 29-Sep-2019 15:29:52 | ---> 37a13b69bd4e |
| 29-Sep-2019 15:29:52 | Step 7/9 : WORKDIR /home/clowder |
| 29-Sep-2019 15:29:52 | ---> Running in c8c1f56b025a |
| 29-Sep-2019 15:29:53 | Removing intermediate container c8c1f56b025a |
| 29-Sep-2019 15:29:53 | ---> a113c4f7975e |
| 29-Sep-2019 15:29:53 | Step 8/9 : COPY notifications.json /home/clowder |
| 29-Sep-2019 15:29:53 | ---> 78f1d8d724d0 |
| 29-Sep-2019 15:29:53 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 29-Sep-2019 15:29:53 | ---> Running in 4f15ef17c1b0 |
| 29-Sep-2019 15:29:53 | Removing intermediate container 4f15ef17c1b0 |
| 29-Sep-2019 15:29:53 | ---> b2f379ef69eb |
| 29-Sep-2019 15:29:53 | Successfully built b2f379ef69eb |
| 29-Sep-2019 15:29:54 | Successfully tagged clowder/pyclowder:latest |
| 29-Sep-2019 15:29:54 | Sending build context to Docker daemon 262.7kB |
| 29-Sep-2019 15:29:54 | |
| 29-Sep-2019 15:29:54 | Step 1/6 : FROM clowder/pyclowder |
| 29-Sep-2019 15:29:54 | ---> b2f379ef69eb |
| 29-Sep-2019 15:29:54 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:29:54 | ---> Running in 9796861409f7 |
| 29-Sep-2019 15:29:55 | Removing intermediate container 9796861409f7 |
| 29-Sep-2019 15:29:55 | ---> 1ce18cd79ebf |
| 29-Sep-2019 15:29:55 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-Sep-2019 15:29:55 | ---> Running in eb93f454318c |
| 29-Sep-2019 15:29:56 | Removing intermediate container eb93f454318c |
| 29-Sep-2019 15:29:56 | ---> 8ecd79220258 |
| 29-Sep-2019 15:29:56 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:29:56 | ---> Running in 9c777c305113 |
| 29-Sep-2019 15:29:56 | Removing intermediate container 9c777c305113 |
| 29-Sep-2019 15:29:56 | ---> 3bcdc17fb390 |
| 29-Sep-2019 15:29:56 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-Sep-2019 15:29:57 | ---> Running in 19d200ab1d30 |
| 29-Sep-2019 15:29:57 | Removing intermediate container 19d200ab1d30 |
| 29-Sep-2019 15:29:57 | ---> f0fa603b11b1 |
| 29-Sep-2019 15:29:57 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 29-Sep-2019 15:29:57 | ---> Running in 0158e31dd655 |
| 29-Sep-2019 15:29:58 | Removing intermediate container 0158e31dd655 |
| 29-Sep-2019 15:29:58 | ---> 335cc9a6d08c |
| 29-Sep-2019 15:29:58 | Successfully built 335cc9a6d08c |
| 29-Sep-2019 15:29:58 | Successfully tagged clowder/pyclowder:onbuild |
| 29-Sep-2019 15:29:58 | Sending build context to Docker daemon 12.8kB |
| 29-Sep-2019 15:29:58 | |
| 29-Sep-2019 15:29:58 | Step 1/5 : FROM clowder/pyclowder:onbuild |
| 29-Sep-2019 15:29:58 | # Executing 5 build triggers |
| 29-Sep-2019 15:29:59 | ---> Running in 014b9944070d |
| 29-Sep-2019 15:30:01 | Removing intermediate container 014b9944070d |
| 29-Sep-2019 15:30:01 | ---> Running in 974b5fb8f3b1 |
| 29-Sep-2019 15:30:04 | Removing intermediate container 974b5fb8f3b1 |
| 29-Sep-2019 15:30:04 | ---> 6df82f5eb839 |
| 29-Sep-2019 15:30:04 | Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
| 29-Sep-2019 15:30:05 | ---> Running in 750b08c3ac58 |
| 29-Sep-2019 15:30:05 | Removing intermediate container 750b08c3ac58 |
| 29-Sep-2019 15:30:05 | ---> 52121e7f7d7d |
| 29-Sep-2019 15:30:05 | Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:30:05 | ---> Running in 624910eab2b8 |
| 29-Sep-2019 15:30:06 | Removing intermediate container 624910eab2b8 |
| 29-Sep-2019 15:30:06 | ---> 42e9888e0f26 |
| 29-Sep-2019 15:30:06 | Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-Sep-2019 15:30:06 | ---> Running in 0a145d220fde |
| 29-Sep-2019 15:30:06 | Removing intermediate container 0a145d220fde |
| 29-Sep-2019 15:30:06 | ---> 9e480999f790 |
| 29-Sep-2019 15:30:06 | Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ |
| 29-Sep-2019 15:30:07 | ---> Running in 674fc54fbf44 |
| 29-Sep-2019 15:30:07 | Removing intermediate container 674fc54fbf44 |
| 29-Sep-2019 15:30:07 | ---> c868a5a2001f |
| 29-Sep-2019 15:30:07 | Successfully built c868a5a2001f |
| 29-Sep-2019 15:30:07 | Successfully tagged clowder/extractors-binary-preview:onbuild |
| 29-Sep-2019 15:30:07 | Sending build context to Docker daemon 6.656kB |
| 29-Sep-2019 15:30:07 | |
| 29-Sep-2019 15:30:07 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 29-Sep-2019 15:30:07 | # Executing 5 build triggers |
| 29-Sep-2019 15:30:08 | ---> Running in 1716fcb9c18e |
| 29-Sep-2019 15:30:11 | Removing intermediate container 1716fcb9c18e |
| 29-Sep-2019 15:30:11 | ---> Running in 5a26353c2659 |
| 29-Sep-2019 15:30:13 | Removing intermediate container 5a26353c2659 |
| 29-Sep-2019 15:30:13 | ---> 6bfbb15b0985 |
| 29-Sep-2019 15:30:13 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 29-Sep-2019 15:30:13 | ---> Running in f59ff2b36f2a |
| 29-Sep-2019 15:30:14 | Removing intermediate container f59ff2b36f2a |
| 29-Sep-2019 15:30:14 | ---> 11527f7e7442 |
| 29-Sep-2019 15:30:14 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 29-Sep-2019 15:30:15 | ---> Running in 4a715c3d5c45 |
| 29-Sep-2019 15:30:15 | Removing intermediate container 4a715c3d5c45 |
| 29-Sep-2019 15:30:15 | ---> 513d7733189a |
| 29-Sep-2019 15:30:15 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:30:15 | ---> Running in 1e04165c9bc9 |
| 29-Sep-2019 15:30:16 | Removing intermediate container 1e04165c9bc9 |
| 29-Sep-2019 15:30:16 | ---> 0c4e423af4e1 |
| 29-Sep-2019 15:30:16 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-Sep-2019 15:30:16 | ---> Running in 9c9bace7db0f |
| 29-Sep-2019 15:30:16 | Removing intermediate container 9c9bace7db0f |
| 29-Sep-2019 15:30:16 | ---> bd2d58600a8d |
| 29-Sep-2019 15:30:16 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:30:17 | ---> Running in d47dca3286ae |
| 29-Sep-2019 15:30:17 | Removing intermediate container d47dca3286ae |
| 29-Sep-2019 15:30:17 | ---> b4daaca986dc |
| 29-Sep-2019 15:30:17 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-Sep-2019 15:30:18 | ---> Running in ed2fedd9aaac |
| 29-Sep-2019 15:30:19 | Removing intermediate container ed2fedd9aaac |
| 29-Sep-2019 15:30:19 | ---> 91a943292923 |
| 29-Sep-2019 15:30:19 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 29-Sep-2019 15:30:19 | ---> Running in 80dc2205115d |
| 29-Sep-2019 15:30:19 | Removing intermediate container 80dc2205115d |
| 29-Sep-2019 15:30:19 | ---> 94526104976b |
| 29-Sep-2019 15:30:19 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 29-Sep-2019 15:30:19 | ---> Running in 7b501ec7b2fc |
| 29-Sep-2019 15:30:20 | Removing intermediate container 7b501ec7b2fc |
| 29-Sep-2019 15:30:20 | ---> d6195a6ce17f |
| 29-Sep-2019 15:30:20 | Successfully built d6195a6ce17f |
| 29-Sep-2019 15:30:20 | Successfully tagged clowder/extractors-simple-extractor:onbuild |
| 29-Sep-2019 15:30:20 | Sending build context to Docker daemon 13.31kB |
| 29-Sep-2019 15:30:20 | |
| 29-Sep-2019 15:30:20 | Step 1/10 : FROM clowder/pyclowder:latest |
| 29-Sep-2019 15:30:20 | ---> b2f379ef69eb |
| 29-Sep-2019 15:30:20 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 29-Sep-2019 15:30:20 | ---> Running in f36abab4aa37 |
| 29-Sep-2019 15:30:21 | Removing intermediate container f36abab4aa37 |
| 29-Sep-2019 15:30:21 | ---> 1a7117bcaee8 |
| 29-Sep-2019 15:30:21 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 29-Sep-2019 15:30:21 | ---> Running in 125e4a124e2c |
| 29-Sep-2019 15:30:22 | Executing: /tmp/tmp.z0biypJ8FW/gpg.1.sh --keyserver |
| 29-Sep-2019 15:30:22 | keyserver.ubuntu.com |
| 29-Sep-2019 15:30:22 | --recv |
| 29-Sep-2019 15:30:22 | E084DAB9 |
| 29-Sep-2019 15:30:22 | gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com |
| 29-Sep-2019 15:30:22 | gpg: key E084DAB9: public key "Totally Legit Signing Key <mallory@example.org>" imported |
| 29-Sep-2019 15:30:22 | gpg: Total number processed: 1 |
| 29-Sep-2019 15:30:22 | gpg: imported: 1 (RSA: 1) |
| 29-Sep-2019 15:30:30 | W: GPG error: http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9 |
| 29-Sep-2019 15:30:30 | W: The repository 'http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease' is not signed. |
| 29-Sep-2019 15:30:31 | Reading package lists... |
| 29-Sep-2019 15:30:31 | Building dependency tree... |
| 29-Sep-2019 15:30:31 | Reading state information... |
| 29-Sep-2019 15:30:31 | The following additional packages will be installed: |
| 29-Sep-2019 15:30:31 | autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 |
| 29-Sep-2019 15:30:31 | cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev |
| 29-Sep-2019 15:30:31 | file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 |
| 29-Sep-2019 15:30:31 | gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool |
| 29-Sep-2019 15:30:31 | intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal |
| 29-Sep-2019 15:30:31 | libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev |
| 29-Sep-2019 15:30:31 | libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 |
| 29-Sep-2019 15:30:31 | libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl |
| 29-Sep-2019 15:30:31 | libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev |
| 29-Sep-2019 15:30:31 | libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 |
| 29-Sep-2019 15:30:31 | libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b |
| 29-Sep-2019 15:30:31 | libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 |
| 29-Sep-2019 15:30:31 | libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl |
| 29-Sep-2019 15:30:31 | libhttp-cookies-perl libhttp-date-perl libhttp-message-perl |
| 29-Sep-2019 15:30:31 | libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 |
| 29-Sep-2019 15:30:31 | libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 |
| 29-Sep-2019 15:30:31 | libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev |
| 29-Sep-2019 15:30:31 | libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 |
| 29-Sep-2019 15:30:31 | liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl |
| 29-Sep-2019 15:30:31 | liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 |
| 29-Sep-2019 15:30:31 | libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 |
| 29-Sep-2019 15:30:31 | libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils |
| 29-Sep-2019 15:30:31 | libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 |
| 29-Sep-2019 15:30:31 | libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 |
| 29-Sep-2019 15:30:31 | libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 |
| 29-Sep-2019 15:30:31 | libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 |
| 29-Sep-2019 15:30:31 | libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 |
| 29-Sep-2019 15:30:31 | libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl |
| 29-Sep-2019 15:30:31 | libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 |
| 29-Sep-2019 15:30:31 | libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 |
| 29-Sep-2019 15:30:31 | libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase |
| 29-Sep-2019 15:30:31 | patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources |
| 29-Sep-2019 15:30:31 | python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils |
| 29-Sep-2019 15:30:31 | zip zlib1g-dev |
| 29-Sep-2019 15:30:31 | Suggested packages: |
| 29-Sep-2019 15:30:31 | autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican |
| 29-Sep-2019 15:30:31 | | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make |
| 29-Sep-2019 15:30:31 | debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg |
| 29-Sep-2019 15:30:31 | gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg |
| 29-Sep-2019 15:30:31 | libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg |
| 29-Sep-2019 15:30:31 | libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg |
| 29-Sep-2019 15:30:31 | gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib |
| 29-Sep-2019 15:30:31 | gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc |
| 29-Sep-2019 15:30:31 | glibc-doc gnutls-bin krb5-doc krb5-user libdata-dump-perl icu-doc |
| 29-Sep-2019 15:30:31 | libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc libstdc++-5-doc |
| 29-Sep-2019 15:30:31 | tcl8.6 tk8.6 libauthen-ntlm-perl make-doc less www-browser ed diffutils-doc |
| 29-Sep-2019 15:30:31 | perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl |
| 29-Sep-2019 15:30:31 | libmail-box-perl python-setuptools python-rsvg python-cairo ess r-doc-info |
| 29-Sep-2019 15:30:31 | | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base |
| 29-Sep-2019 15:30:31 | texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra |
| 29-Sep-2019 15:30:31 | texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo |
| 29-Sep-2019 15:30:31 | gvfs-bin |
| 29-Sep-2019 15:30:31 | Recommended packages: |
| 29-Sep-2019 15:30:31 | fakeroot libalgorithm-merge-perl curl | wget | lynx-cur libasprintf-dev |
| 29-Sep-2019 15:30:31 | libgettextpo-dev bzip2-doc manpages manpages-dev libfile-fcntllock-perl |
| 29-Sep-2019 15:30:31 | libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl |
| 29-Sep-2019 15:30:31 | krb5-locales libsasl2-modules libhtml-form-perl libhttp-daemon-perl |
| 29-Sep-2019 15:30:31 | libmailtools-perl xml-core ifupdown rename libmail-sendmail-perl |
| 29-Sep-2019 15:30:31 | r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl |
| 29-Sep-2019 15:30:31 | libx11-protocol-perl x11-utils x11-xserver-utils |
| 29-Sep-2019 15:30:31 | The following NEW packages will be installed: |
| 29-Sep-2019 15:30:31 | autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 |
| 29-Sep-2019 15:30:31 | cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev |
| 29-Sep-2019 15:30:31 | file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 |
| 29-Sep-2019 15:30:31 | gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool |
| 29-Sep-2019 15:30:31 | intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal |
| 29-Sep-2019 15:30:31 | libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev |
| 29-Sep-2019 15:30:31 | libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 |
| 29-Sep-2019 15:30:31 | libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl |
| 29-Sep-2019 15:30:31 | libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev |
| 29-Sep-2019 15:30:31 | libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 |
| 29-Sep-2019 15:30:31 | libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b |
| 29-Sep-2019 15:30:31 | libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 |
| 29-Sep-2019 15:30:31 | libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl |
| 29-Sep-2019 15:30:31 | libhttp-cookies-perl libhttp-date-perl libhttp-message-perl |
| 29-Sep-2019 15:30:31 | libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 |
| 29-Sep-2019 15:30:31 | libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 |
| 29-Sep-2019 15:30:31 | libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev |
| 29-Sep-2019 15:30:31 | libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 |
| 29-Sep-2019 15:30:31 | liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl |
| 29-Sep-2019 15:30:31 | liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 |
| 29-Sep-2019 15:30:31 | libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 |
| 29-Sep-2019 15:30:31 | libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils |
| 29-Sep-2019 15:30:31 | libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 |
| 29-Sep-2019 15:30:31 | libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 |
| 29-Sep-2019 15:30:31 | libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 |
| 29-Sep-2019 15:30:31 | libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 |
| 29-Sep-2019 15:30:31 | libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 |
| 29-Sep-2019 15:30:31 | libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl |
| 29-Sep-2019 15:30:31 | libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 |
| 29-Sep-2019 15:30:31 | libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 |
| 29-Sep-2019 15:30:31 | libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase |
| 29-Sep-2019 15:30:31 | patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources |
| 29-Sep-2019 15:30:31 | python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common |
| 29-Sep-2019 15:30:31 | xauth xdg-utils xz-utils zip zlib1g-dev |
| 29-Sep-2019 15:30:32 | 0 upgraded, 190 newly installed, 0 to remove and 0 not upgraded. |
| 29-Sep-2019 15:30:32 | Need to get 116 MB of archives. |
| 29-Sep-2019 15:30:32 | After this operation, 416 MB of additional disk space will be used. |
| 29-Sep-2019 15:30:32 | WARNING: The following packages cannot be authenticated! |
| 29-Sep-2019 15:30:32 | r-base-core r-base-dev |
| 29-Sep-2019 15:30:32 | E: There were unauthenticated packages and -y was used without --allow-unauthenticated |
| 29-Sep-2019 15:30:32 | The command '/bin/sh -c echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"' returned a non-zero code: 100 |
| 29-Sep-2019 15:30:32 | |
| 29-Sep-2019 15:30:32 | Failing task since return code of [/bin/sh docker.sh] was 100 while expected 0 |
| 29-Sep-2019 15:30:32 | Finished task 'docker build and push' with result: Failed |
| 29-Sep-2019 15:30:32 | Running post build plugin 'Docker Container Cleanup' |
| 29-Sep-2019 15:30:32 | Running post build plugin 'NCover Results Collector' |
| 29-Sep-2019 15:30:32 | Running post build plugin 'Clover Results Collector' |
| 29-Sep-2019 15:30:32 | Running post build plugin 'npm Cache Cleanup' |
| 29-Sep-2019 15:30:32 | Running post build plugin 'Artifact Copier' |
| 29-Sep-2019 15:30:32 | Finalising the build... |
| 29-Sep-2019 15:30:32 | Stopping timer. |
| 29-Sep-2019 15:30:32 | Build CATS-PYC37-JOB1-1 completed. |
| 29-Sep-2019 15:30:32 | Running on server: post build plugin 'NCover Results Collector' |
| 29-Sep-2019 15:30:32 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 29-Sep-2019 15:30:32 | Running on server: post build plugin 'Clover Delta Calculator' |
| 29-Sep-2019 15:30:32 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 29-Sep-2019 15:30:32 | All post build plugins have finished |
| 29-Sep-2019 15:30:32 | Generating build results summary... |
| 29-Sep-2019 15:30:32 | Saving build results to disk... |
| 29-Sep-2019 15:30:32 | Logging substituted variables... |
| 29-Sep-2019 15:30:32 | Indexing build results... |
| 29-Sep-2019 15:30:32 | Finished building CATS-PYC37-JOB1-1. |