Build: #1 failed

Job: Default Job failed

Stages & jobs

  1. Default Stage

Build log

The build generated 333 lines of output. Download or view full build log

29-Sep-2019 15:35:21 Build Clowder - pyclowder - bugfix-BD-2344-update-pip-in-simple-extractor-wrapper - Default Job #1 (CATS-PYC38-JOB1-1) started building on agent buildserver-2.os.ncsa.edu
29-Sep-2019 15:35:21 Remote agent on host buildserver-2.os.ncsa.edu
29-Sep-2019 15:35:21 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC38-JOB1
29-Sep-2019 15:35:21 Executing build Clowder - pyclowder - bugfix-BD-2344-update-pip-in-simple-extractor-wrapper - Default Job #1 (CATS-PYC38-JOB1-1)
29-Sep-2019 15:35:21 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
29-Sep-2019 15:35:21 Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC38-JOB1
29-Sep-2019 15:35:21 Updating source code to revision: 8c97747b1d0882a0524eb5885c4f82791a45c25d
29-Sep-2019 15:35:21 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC38-JOB1/.git'.
29-Sep-2019 15:35:21 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC38-JOB1/.git/
29-Sep-2019 15:35:22 Fetching 'refs/heads/bugfix/BD-2344-update-pip-in-simple-extractor-wrapper' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch.
29-Sep-2019 15:35:22 Warning: Permanently added '[127.0.0.1]:39245' (RSA) to the list of known hosts.
29-Sep-2019 15:35:22 From ssh://127.0.0.1:39245/cats/pyclowder
29-Sep-2019 15:35:22 * [new branch]      bugfix/BD-2344-update-pip-in-simple-extractor-wrapper -> bugfix/BD-2344-update-pip-in-simple-extractor-wrapper
29-Sep-2019 15:35:22 Checking out revision 8c97747b1d0882a0524eb5885c4f82791a45c25d.
29-Sep-2019 15:35:22 Switched to branch 'bugfix/BD-2344-update-pip-in-simple-extractor-wrapper'
29-Sep-2019 15:35:22 Updated source code to revision: 8c97747b1d0882a0524eb5885c4f82791a45c25d
29-Sep-2019 15:35:22 Finished task 'Checkout Default Repository' with result: Success
29-Sep-2019 15:35:22 Running pre-build action: VCS Version Collector
29-Sep-2019 15:35:22 Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script'
29-Sep-2019 15:35:22
Beginning to execute external process for build 'Clowder - pyclowder - bugfix-BD-2344-update-pip-in-simple-extractor-wrapper - Default Job #1 (CATS-PYC38-JOB1-1)'
... running command line:
/bin/sh docker.sh
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC38-JOB1
... using extra environment variables:
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bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_planRepository_1_branchDisplayName=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper
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bamboo_shortJobKey=JOB1
bamboo_repository_177831954_branch_name=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper
bamboo_planRepository_revision=8c97747b1d0882a0524eb5885c4f82791a45c25d
bamboo_buildTimeStamp=2019-09-28T10:50:45.119-05:00
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
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bamboo_repository_git_branch=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper
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bamboo_planRepository_1_revision=8c97747b1d0882a0524eb5885c4f82791a45c25d
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bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
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bamboo_planRepository_branch=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper
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bamboo_repository_177831954_revision_number=8c97747b1d0882a0524eb5885c4f82791a45c25d
bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git
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bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh
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bamboo_planRepository_1_branchName=bugfix/BD-2344-update-pip-in-simple-extractor-wrapper
29-Sep-2019 15:35:22 Sending build context to Docker daemon  264.2kB
29-Sep-2019 15:35:22
29-Sep-2019 15:35:22 Step 1/9 : FROM ubuntu:16.04
29-Sep-2019 15:35:22 ---> 657d80a6401d
29-Sep-2019 15:35:22 Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F"     RABBITMQ_EXCHANGE="clowder"     RABBITMQ_QUEUE=""     REGISTRATION_ENDPOINTS=""     EMAIL_SERVER=""     EMAIL_SENDER="extractor"     MAIN_SCRIPT=""
29-Sep-2019 15:35:22 ---> Using cache
29-Sep-2019 15:35:22 ---> d0185d2a2449
29-Sep-2019 15:35:22 Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends         python         python-pip     && pip install --upgrade setuptools     && rm -rf /var/lib/apt/lists/*
29-Sep-2019 15:35:22 ---> Using cache
29-Sep-2019 15:35:22 ---> 46cac4521d03
29-Sep-2019 15:35:22 Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder
29-Sep-2019 15:35:22 ---> 43db4a8cd337
29-Sep-2019 15:35:22 Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/
29-Sep-2019 15:35:23 ---> 459bfa9de516
29-Sep-2019 15:35:23 Step 6/9 : RUN pip install --upgrade /tmp/pyclowder     && rm -rf /tmp/pyclowder
29-Sep-2019 15:35:23 ---> Running in a91366307286
29-Sep-2019 15:35:24 Processing /tmp/pyclowder
29-Sep-2019 15:35:25 Collecting enum34==1.1.6 (from pyclowder===2.1.1)
29-Sep-2019 15:35:25   Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl
29-Sep-2019 15:35:25 Collecting pika==1.0.0 (from pyclowder===2.1.1)
29-Sep-2019 15:35:25   Downloading https://files.pythonhosted.org/packages/53/a4/5aff2293e1cdcf5f77447ebdfeaac99b622aef7d1e723cf9a5fe317b077c/pika-1.0.0-py2.py3-none-any.whl (148kB)
29-Sep-2019 15:35:25 Collecting PyYAML==5.1 (from pyclowder===2.1.1)
29-Sep-2019 15:35:25   Downloading https://files.pythonhosted.org/packages/9f/2c/9417b5c774792634834e730932745bc09a7d36754ca00acf1ccd1ac2594d/PyYAML-5.1.tar.gz (274kB)
29-Sep-2019 15:35:25 Collecting requests==2.21.0 (from pyclowder===2.1.1)
29-Sep-2019 15:35:25   Downloading https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl (57kB)
29-Sep-2019 15:35:25 Collecting certifi>=2017.4.17 (from requests==2.21.0->pyclowder===2.1.1)
29-Sep-2019 15:35:25   Downloading https://files.pythonhosted.org/packages/18/b0/8146a4f8dd402f60744fa380bc73ca47303cccf8b9190fd16a827281eac2/certifi-2019.9.11-py2.py3-none-any.whl (154kB)
29-Sep-2019 15:35:25 Collecting chardet<3.1.0,>=3.0.2 (from requests==2.21.0->pyclowder===2.1.1)
29-Sep-2019 15:35:25   Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB)
29-Sep-2019 15:35:25 Collecting idna<2.9,>=2.5 (from requests==2.21.0->pyclowder===2.1.1)
29-Sep-2019 15:35:25   Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB)
29-Sep-2019 15:35:26 Collecting urllib3<1.25,>=1.21.1 (from requests==2.21.0->pyclowder===2.1.1)
29-Sep-2019 15:35:26   Downloading https://files.pythonhosted.org/packages/01/11/525b02e4acc0c747de8b6ccdab376331597c569c42ea66ab0a1dbd36eca2/urllib3-1.24.3-py2.py3-none-any.whl (118kB)
29-Sep-2019 15:35:26 Building wheels for collected packages: PyYAML
29-Sep-2019 15:35:26   Running setup.py bdist_wheel for PyYAML: started
29-Sep-2019 15:35:26   Running setup.py bdist_wheel for PyYAML: finished with status 'error'
29-Sep-2019 15:35:26   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-6yLx09/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpFeZE7Dpip-wheel- --python-tag cp27:
29-Sep-2019 15:35:26   usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
29-Sep-2019 15:35:26      or: -c --help [cmd1 cmd2 ...]
29-Sep-2019 15:35:26      or: -c --help-commands
29-Sep-2019 15:35:26      or: -c cmd --help
29-Sep-2019 15:35:26  
29-Sep-2019 15:35:26   error: invalid command 'bdist_wheel'
29-Sep-2019 15:35:26  
29-Sep-2019 15:35:26   ----------------------------------------
29-Sep-2019 15:35:26   Failed building wheel for PyYAML
29-Sep-2019 15:35:26   Running setup.py clean for PyYAML
29-Sep-2019 15:35:26 Failed to build PyYAML
29-Sep-2019 15:35:26 Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder
29-Sep-2019 15:35:26   Running setup.py install for PyYAML: started
29-Sep-2019 15:35:26     Running setup.py install for PyYAML: finished with status 'done'
29-Sep-2019 15:35:27   Running setup.py install for pyclowder: started
29-Sep-2019 15:35:27     Running setup.py install for pyclowder: finished with status 'done'
29-Sep-2019 15:35:27 Successfully installed PyYAML-5.1 certifi-2019.9.11 chardet-3.0.4 enum34-1.1.6 idna-2.8 pika-1.0.0 pyclowder-2.1.1 requests-2.21.0 urllib3-1.24.3
29-Sep-2019 15:35:27 You are using pip version 8.1.1, however version 19.2.3 is available.
29-Sep-2019 15:35:27 You should consider upgrading via the 'pip install --upgrade pip' command.
29-Sep-2019 15:35:28 Removing intermediate container a91366307286
29-Sep-2019 15:35:28 ---> 0c5462291f53
29-Sep-2019 15:35:28 Step 7/9 : WORKDIR /home/clowder
29-Sep-2019 15:35:28 ---> Running in 61694979c948
29-Sep-2019 15:35:29 Removing intermediate container 61694979c948
29-Sep-2019 15:35:29 ---> 3d5e1b4f539e
29-Sep-2019 15:35:29 Step 8/9 : COPY notifications.json /home/clowder
29-Sep-2019 15:35:29 ---> dbb136a93bdb
29-Sep-2019 15:35:29 Step 9/9 : CMD python "./${MAIN_SCRIPT}"
29-Sep-2019 15:35:30 ---> Running in 392120884fdf
29-Sep-2019 15:35:30 Removing intermediate container 392120884fdf
29-Sep-2019 15:35:30 ---> 7d95282dea62
29-Sep-2019 15:35:30 Successfully built 7d95282dea62
29-Sep-2019 15:35:30 Successfully tagged clowder/pyclowder:latest
29-Sep-2019 15:35:30 Sending build context to Docker daemon  262.7kB
29-Sep-2019 15:35:30
29-Sep-2019 15:35:30 Step 1/6 : FROM clowder/pyclowder
29-Sep-2019 15:35:30 ---> 7d95282dea62
29-Sep-2019 15:35:30 Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 15:35:30 ---> Running in 041c36992ab0
29-Sep-2019 15:35:31 Removing intermediate container 041c36992ab0
29-Sep-2019 15:35:31 ---> f2595e11b6a8
29-Sep-2019 15:35:31 Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 15:35:31 ---> Running in e06c1434110b
29-Sep-2019 15:35:31 Removing intermediate container e06c1434110b
29-Sep-2019 15:35:31 ---> 0cb68c689e09
29-Sep-2019 15:35:31 Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Sep-2019 15:35:31 ---> Running in daeca987a3f5
29-Sep-2019 15:35:32 Removing intermediate container daeca987a3f5
29-Sep-2019 15:35:32 ---> 59cf5945c932
29-Sep-2019 15:35:32 Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Sep-2019 15:35:32 ---> Running in 8ca2393c33d8
29-Sep-2019 15:35:32 Removing intermediate container 8ca2393c33d8
29-Sep-2019 15:35:32 ---> 325de8061521
29-Sep-2019 15:35:32 Step 6/6 : ONBUILD ADD . /home/clowder/
29-Sep-2019 15:35:33 ---> Running in b814cfcf0fb7
29-Sep-2019 15:35:33 Removing intermediate container b814cfcf0fb7
29-Sep-2019 15:35:33 ---> b9c3abcac832
29-Sep-2019 15:35:33 Successfully built b9c3abcac832
29-Sep-2019 15:35:33 Successfully tagged clowder/pyclowder:onbuild
29-Sep-2019 15:35:33 Sending build context to Docker daemon   12.8kB
29-Sep-2019 15:35:33
29-Sep-2019 15:35:33 Step 1/5 : FROM clowder/pyclowder:onbuild
29-Sep-2019 15:35:33 # Executing 5 build triggers
29-Sep-2019 15:35:34 ---> Running in a13df48bcb14
29-Sep-2019 15:35:36 Removing intermediate container a13df48bcb14
29-Sep-2019 15:35:36 ---> Running in edab5fd26f3f
29-Sep-2019 15:35:39 Removing intermediate container edab5fd26f3f
29-Sep-2019 15:35:39 ---> 8ab4d38f4feb
29-Sep-2019 15:35:39 Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py"     RABBITMQ_QUEUE=""     IMAGE_BINARY=""     IMAGE_TYPE=""     IMAGE_THUMBNAIL_COMMAND=""     IMAGE_PREVIEW_COMMAND=""     PREVIEW_BINARY=""     PREVIEW_TYPE=""     PREVIEW_COMMAND=""
29-Sep-2019 15:35:40 ---> Running in f56971872ef0
29-Sep-2019 15:35:40 Removing intermediate container f56971872ef0
29-Sep-2019 15:35:40 ---> 540d0ea7b187
29-Sep-2019 15:35:40 Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 15:35:40 ---> Running in e95f2c2bdba7
29-Sep-2019 15:35:40 Removing intermediate container e95f2c2bdba7
29-Sep-2019 15:35:40 ---> f2f23a3bd74f
29-Sep-2019 15:35:40 Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 15:35:40 ---> Running in c6a3b6ea6091
29-Sep-2019 15:35:41 Removing intermediate container c6a3b6ea6091
29-Sep-2019 15:35:41 ---> acab6ac98073
29-Sep-2019 15:35:41 Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/
29-Sep-2019 15:35:41 ---> Running in a995b1a4012c
29-Sep-2019 15:35:41 Removing intermediate container a995b1a4012c
29-Sep-2019 15:35:41 ---> 671d412b75ac
29-Sep-2019 15:35:41 Successfully built 671d412b75ac
29-Sep-2019 15:35:41 Successfully tagged clowder/extractors-binary-preview:onbuild
29-Sep-2019 15:35:41 Sending build context to Docker daemon  6.656kB
29-Sep-2019 15:35:41
29-Sep-2019 15:35:41 Step 1/9 : FROM clowder/pyclowder:onbuild
29-Sep-2019 15:35:41 # Executing 5 build triggers
29-Sep-2019 15:35:42 ---> Running in b9aecb9d2891
29-Sep-2019 15:35:47 Removing intermediate container b9aecb9d2891
29-Sep-2019 15:35:48 ---> Running in 8a85e5763719
29-Sep-2019 15:35:49 Removing intermediate container 8a85e5763719
29-Sep-2019 15:35:50 ---> f92adb0c865d
29-Sep-2019 15:35:50 Step 2/9 : ENV EXTRACTION_FUNC=""
29-Sep-2019 15:35:50 ---> Running in 8638aaf8ec3c
29-Sep-2019 15:35:50 Removing intermediate container 8638aaf8ec3c
29-Sep-2019 15:35:50 ---> 917bdf425ad4
29-Sep-2019 15:35:50 Step 3/9 : ENV EXTRACTION_MODULE=""
29-Sep-2019 15:35:50 ---> Running in bdb1f951abc4
29-Sep-2019 15:35:51 Removing intermediate container bdb1f951abc4
29-Sep-2019 15:35:51 ---> 5ca5e34da548
29-Sep-2019 15:35:51 Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/
29-Sep-2019 15:35:52 ---> Running in 3a33e8f85a3f
29-Sep-2019 15:35:52 Removing intermediate container 3a33e8f85a3f
29-Sep-2019 15:35:52 ---> 5c8d8a334688
29-Sep-2019 15:35:52 Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then                 apt-get -q -q update                 && xargs apt-get -y install --no-install-recommends < packages.apt                 && rm -rf /var/lib/apt/lists/*;             fi
29-Sep-2019 15:35:52 ---> Running in d22298d1e5aa
29-Sep-2019 15:35:53 Removing intermediate container d22298d1e5aa
29-Sep-2019 15:35:53 ---> 42c1c2ca6851
29-Sep-2019 15:35:53 Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/
29-Sep-2019 15:35:53 ---> Running in 877a80fb2538
29-Sep-2019 15:35:53 Removing intermediate container 877a80fb2538
29-Sep-2019 15:35:53 ---> df8648b33bd6
29-Sep-2019 15:35:53 Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then                 pip install --no-cache-dir -r requirements.txt;             fi
29-Sep-2019 15:35:53 ---> Running in c1c101453e53
29-Sep-2019 15:35:54 Removing intermediate container c1c101453e53
29-Sep-2019 15:35:54 ---> 7bc20008faad
29-Sep-2019 15:35:54 Step 8/9 : ONBUILD ADD . /home/clowder/
29-Sep-2019 15:35:54 ---> Running in b72caa234380
29-Sep-2019 15:35:55 Removing intermediate container b72caa234380
29-Sep-2019 15:35:55 ---> 85a3a9220ffd
29-Sep-2019 15:35:55 Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()"
29-Sep-2019 15:35:55 ---> Running in b82f871f646f
29-Sep-2019 15:35:55 Removing intermediate container b82f871f646f
29-Sep-2019 15:35:55 ---> 0c2b39f9ee56
29-Sep-2019 15:35:55 Successfully built 0c2b39f9ee56
29-Sep-2019 15:35:55 Successfully tagged clowder/extractors-simple-extractor:onbuild
29-Sep-2019 15:35:55 Sending build context to Docker daemon  13.31kB
29-Sep-2019 15:35:55
29-Sep-2019 15:35:55 Step 1/10 : FROM clowder/pyclowder:latest
29-Sep-2019 15:35:55 ---> 7d95282dea62
29-Sep-2019 15:35:55 Step 2/10 : ENV R_SCRIPT=""     R_FUNCTION=""
29-Sep-2019 15:35:56 ---> Running in 91c339be4df7
29-Sep-2019 15:35:56 Removing intermediate container 91c339be4df7
29-Sep-2019 15:35:56 ---> bb211937ff43
29-Sep-2019 15:35:56 Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"
29-Sep-2019 15:35:56 ---> Running in 09a203d4924a
29-Sep-2019 15:35:57 Executing: /tmp/tmp.zHlctM3Bsb/gpg.1.sh --keyserver
29-Sep-2019 15:35:57 keyserver.ubuntu.com
29-Sep-2019 15:35:57 --recv
29-Sep-2019 15:35:57 E084DAB9
29-Sep-2019 15:35:57 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com
29-Sep-2019 15:35:57 gpg: key E084DAB9: public key "Totally Legit Signing Key <mallory@example.org>" imported
29-Sep-2019 15:35:57 gpg: Total number processed: 1
29-Sep-2019 15:35:57 gpg:               imported: 1  (RSA: 1)
29-Sep-2019 15:36:05 W: GPG error: http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9
29-Sep-2019 15:36:05 W: The repository 'http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease' is not signed.
29-Sep-2019 15:36:06 Reading package lists...
29-Sep-2019 15:36:06 Building dependency tree...
29-Sep-2019 15:36:06 Reading state information...
29-Sep-2019 15:36:07 The following additional packages will be installed:
29-Sep-2019 15:36:07   autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2
29-Sep-2019 15:36:07   cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev
29-Sep-2019 15:36:07   file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5
29-Sep-2019 15:36:07   gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool
29-Sep-2019 15:36:07   intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal
29-Sep-2019 15:36:07   libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev
29-Sep-2019 15:36:07   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3
29-Sep-2019 15:36:07   libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl
29-Sep-2019 15:36:07   libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev
29-Sep-2019 15:36:07   libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30
29-Sep-2019 15:36:07   libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b
29-Sep-2019 15:36:07   libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4
29-Sep-2019 15:36:07   libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
29-Sep-2019 15:36:07   libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
29-Sep-2019 15:36:07   libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55
29-Sep-2019 15:36:07   libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0
29-Sep-2019 15:36:07   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
29-Sep-2019 15:36:07   libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0
29-Sep-2019 15:36:07   liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl
29-Sep-2019 15:36:07   liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0
29-Sep-2019 15:36:07   libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0
29-Sep-2019 15:36:07   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
29-Sep-2019 15:36:07   libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22
29-Sep-2019 15:36:07   libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
29-Sep-2019 15:36:07   libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2
29-Sep-2019 15:36:07   libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6
29-Sep-2019 15:36:07   libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6
29-Sep-2019 15:36:07   libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl
29-Sep-2019 15:36:07   libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0
29-Sep-2019 15:36:07   libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2
29-Sep-2019 15:36:07   libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase
29-Sep-2019 15:36:07   patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources
29-Sep-2019 15:36:07   python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils
29-Sep-2019 15:36:07   zip zlib1g-dev
29-Sep-2019 15:36:07 Suggested packages:
29-Sep-2019 15:36:07   autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican
29-Sep-2019 15:36:07   | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make
29-Sep-2019 15:36:07   debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg
29-Sep-2019 15:36:07   gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg
29-Sep-2019 15:36:07   libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg
29-Sep-2019 15:36:07   libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg
29-Sep-2019 15:36:07   gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib
29-Sep-2019 15:36:07   gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc
29-Sep-2019 15:36:07   glibc-doc gnutls-bin krb5-doc krb5-user libdata-dump-perl icu-doc
29-Sep-2019 15:36:07   libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc libstdc++-5-doc
29-Sep-2019 15:36:07   tcl8.6 tk8.6 libauthen-ntlm-perl make-doc less www-browser ed diffutils-doc
29-Sep-2019 15:36:07   perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl
29-Sep-2019 15:36:07   libmail-box-perl python-setuptools python-rsvg python-cairo ess r-doc-info
29-Sep-2019 15:36:07   | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
29-Sep-2019 15:36:07   texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
29-Sep-2019 15:36:07   texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
29-Sep-2019 15:36:07   gvfs-bin
29-Sep-2019 15:36:07 Recommended packages:
29-Sep-2019 15:36:07   fakeroot libalgorithm-merge-perl curl | wget | lynx-cur libasprintf-dev
29-Sep-2019 15:36:07   libgettextpo-dev bzip2-doc manpages manpages-dev libfile-fcntllock-perl
29-Sep-2019 15:36:07   libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl
29-Sep-2019 15:36:07   krb5-locales libsasl2-modules libhtml-form-perl libhttp-daemon-perl
29-Sep-2019 15:36:07   libmailtools-perl xml-core ifupdown rename libmail-sendmail-perl
29-Sep-2019 15:36:07   r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
29-Sep-2019 15:36:07   libx11-protocol-perl x11-utils x11-xserver-utils
29-Sep-2019 15:36:07 The following NEW packages will be installed:
29-Sep-2019 15:36:07   autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2
29-Sep-2019 15:36:07   cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev
29-Sep-2019 15:36:07   file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5
29-Sep-2019 15:36:07   gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool
29-Sep-2019 15:36:07   intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal
29-Sep-2019 15:36:07   libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev
29-Sep-2019 15:36:07   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3
29-Sep-2019 15:36:07   libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl
29-Sep-2019 15:36:07   libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev
29-Sep-2019 15:36:07   libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30
29-Sep-2019 15:36:07   libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b
29-Sep-2019 15:36:07   libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4
29-Sep-2019 15:36:07   libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
29-Sep-2019 15:36:07   libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
29-Sep-2019 15:36:07   libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55
29-Sep-2019 15:36:07   libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0
29-Sep-2019 15:36:07   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
29-Sep-2019 15:36:07   libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0
29-Sep-2019 15:36:07   liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl
29-Sep-2019 15:36:07   liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0
29-Sep-2019 15:36:07   libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0
29-Sep-2019 15:36:07   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
29-Sep-2019 15:36:07   libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22
29-Sep-2019 15:36:07   libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
29-Sep-2019 15:36:07   libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2
29-Sep-2019 15:36:07   libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6
29-Sep-2019 15:36:07   libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6
29-Sep-2019 15:36:07   libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl
29-Sep-2019 15:36:07   libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0
29-Sep-2019 15:36:07   libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2
29-Sep-2019 15:36:07   libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase
29-Sep-2019 15:36:07   patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources
29-Sep-2019 15:36:07   python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common
29-Sep-2019 15:36:07   xauth xdg-utils xz-utils zip zlib1g-dev
29-Sep-2019 15:36:07 0 upgraded, 190 newly installed, 0 to remove and 0 not upgraded.
29-Sep-2019 15:36:07 Need to get 116 MB of archives.
29-Sep-2019 15:36:07 After this operation, 416 MB of additional disk space will be used.
29-Sep-2019 15:36:07 WARNING: The following packages cannot be authenticated!
29-Sep-2019 15:36:07   r-base-core r-base-dev
29-Sep-2019 15:36:07 E: There were unauthenticated packages and -y was used without --allow-unauthenticated
29-Sep-2019 15:36:07 The command '/bin/sh -c echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list     && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9     && apt-get -q -q update     && apt-get -y install --no-install-recommends r-base-core r-base-dev     && rm -rf /var/lib/apt/lists/*     && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"' returned a non-zero code: 100
29-Sep-2019 15:36:07
29-Sep-2019 15:36:07 Failing task since return code of [/bin/sh docker.sh] was 100 while expected 0
29-Sep-2019 15:36:07 Finished task 'docker build and push' with result: Failed
29-Sep-2019 15:36:07 Running post build plugin 'Docker Container Cleanup'
29-Sep-2019 15:36:07 Running post build plugin 'NCover Results Collector'
29-Sep-2019 15:36:07 Running post build plugin 'Clover Results Collector'
29-Sep-2019 15:36:07 Running post build plugin 'npm Cache Cleanup'
29-Sep-2019 15:36:07 Running post build plugin 'Artifact Copier'
29-Sep-2019 15:36:07 Finalising the build...
29-Sep-2019 15:36:07 Stopping timer.
29-Sep-2019 15:36:07 Build CATS-PYC38-JOB1-1 completed.
29-Sep-2019 15:36:07 Running on server: post build plugin 'NCover Results Collector'
29-Sep-2019 15:36:07 Running on server: post build plugin 'Build Hanging Detection Configuration'
29-Sep-2019 15:36:07 Running on server: post build plugin 'Clover Delta Calculator'
29-Sep-2019 15:36:07 Running on server: post build plugin 'Maven Dependencies Postprocessor'
29-Sep-2019 15:36:07 All post build plugins have finished
29-Sep-2019 15:36:07 Generating build results summary...
29-Sep-2019 15:36:08 Saving build results to disk...
29-Sep-2019 15:36:08 Logging substituted variables...
29-Sep-2019 15:36:08 Indexing build results...
29-Sep-2019 15:36:08 Finished building CATS-PYC38-JOB1-1.