Build: #1 failed
Job: Default Job failed
Build log
The build generated 505 lines of output. Download or view full build log.
| 29-Sep-2019 15:47:44 | Build Clowder - pyclowder - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job #1 (CATS-PYC45-JOB1-1) started building on agent buildserver-2.os.ncsa.edu |
| 29-Sep-2019 15:47:44 | Remote agent on host buildserver-2.os.ncsa.edu |
| 29-Sep-2019 15:47:44 | Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC45-JOB1 |
| 29-Sep-2019 15:47:44 | Executing build Clowder - pyclowder - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job #1 (CATS-PYC45-JOB1-1) |
| 29-Sep-2019 15:47:44 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 29-Sep-2019 15:47:44 | Checking out into /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC45-JOB1 |
| 29-Sep-2019 15:47:44 | Updating source code to revision: 7e8ea5b3b5c80bacdfca5069f13e77f255c47662 |
| 29-Sep-2019 15:47:44 | Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC45-JOB1/.git'. |
| 29-Sep-2019 15:47:44 | Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC45-JOB1/.git/ |
| 29-Sep-2019 15:47:44 | Fetching 'refs/heads/CATSPYC-19-add-anonymous-email-receiver-on-the-email-message' from 'ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git'. Will try to do a shallow fetch. |
| 29-Sep-2019 15:47:44 | Warning: Permanently added '[127.0.0.1]:39245' (RSA) to the list of known hosts. |
| 29-Sep-2019 15:47:44 | From ssh://127.0.0.1:39245/cats/pyclowder |
| 29-Sep-2019 15:47:44 | * [new branch] CATSPYC-19-add-anonymous-email-receiver-on-the-email-message -> CATSPYC-19-add-anonymous-email-receiver-on-the-email-message |
| 29-Sep-2019 15:47:44 | Checking out revision 7e8ea5b3b5c80bacdfca5069f13e77f255c47662. |
| 29-Sep-2019 15:47:44 | Switched to branch 'CATSPYC-19-add-anonymous-email-receiver-on-the-email-message' |
| 29-Sep-2019 15:47:44 | Updated source code to revision: 7e8ea5b3b5c80bacdfca5069f13e77f255c47662 |
| 29-Sep-2019 15:47:44 | Finished task 'Checkout Default Repository' with result: Success |
| 29-Sep-2019 15:47:44 | Running pre-build action: VCS Version Collector |
| 29-Sep-2019 15:47:44 | Starting task 'docker build and push' of type 'com.atlassian.bamboo.plugins.scripttask:task.builder.script' |
| 29-Sep-2019 15:47:44 | Beginning to execute external process for build 'Clowder - pyclowder - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job #1 (CATS-PYC45-JOB1-1)' ... running command line: /bin/sh docker.sh ... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC45-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_capability_system_builder_command_npm_6=/home/bamboo/node-v6.9.1/bin/npm bamboo_capability_system_builder_command_buckminster_4_3=/home/bamboo/buckminster-4.3/buckminster bamboo_capability_system_builder_node_Node_js_v6_9_1=/home/bamboo/node-v6.9.1/bin/node bamboo_capability_system_builder_command_buckminster_4_4=/home/bamboo/buckminster-4.4/buckminster bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster bamboo_planRepository_1_branchDisplayName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_repository_revision_number=7e8ea5b3b5c80bacdfca5069f13e77f255c47662 bamboo_repository_177831961_revision_number=7e8ea5b3b5c80bacdfca5069f13e77f255c47662 bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC45-JOB1-1 bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC45-JOB1 bamboo_planRepository_1_name=pyclowder bamboo_buildKey=CATS-PYC45-JOB1 bamboo_capability_system_os=linux bamboo_shortPlanName=pyclowder bamboo_planRepository_name=pyclowder bamboo_buildNumber=1 bamboo_capability_system_builder_node_grunt_6=/home/bamboo/node-v6.9.1/bin/grunt bamboo_shortJobName=Default Job bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/CATS-PYC45-JOB1-1 bamboo_planRepository_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_repository_177831961_git_branch=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_agentId=140673028 bamboo_planName=Clowder - pyclowder - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_shortPlanKey=PYC45 bamboo_repository_177831961_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt bamboo_capability_system_builder_node_Node_js_v0_10_28=/home/bamboo/node-v0.10.28/bin/node bamboo_shortJobKey=JOB1 bamboo_planRepository_revision=7e8ea5b3b5c80bacdfca5069f13e77f255c47662 bamboo_buildTimeStamp=2019-09-28T10:50:46.950-05:00 bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1 bamboo_repository_git_branch=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_buildResultKey=CATS-PYC45-JOB1-1 bamboo_repository_branch_name=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_buildPlanName=Clowder - pyclowder - CATSPYC-19-add-anonymous-email-receiver-on-the-email-message - Default Job bamboo_repository_177831961_name=pyclowder bamboo_repository_177831961_branch_name=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_planRepository_1_revision=7e8ea5b3b5c80bacdfca5069f13e77f255c47662 bamboo_capability_system_builder_command_python3=/usr/bin/python3 bamboo_repository_name=pyclowder bamboo_buildFailed=false bamboo_capability_system_docker_executable=/usr/bin/docker bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt bamboo_planRepository_branch=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir bamboo_capability_system_git_executable=/usr/bin/git bamboo_repository_git_username= bamboo_capability_system_builder_sbt_SBT_0_13_13=/home/bamboo/sbt-0.13.13 bamboo_planRepository_branchDisplayName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs bamboo_planRepository_1_type=bbserver bamboo_planRepository_branchName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message bamboo_capability_system_builder_command_python2_7=/usr/bin/python2.7 bamboo_capability_system_hostname=buildserver-1 bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_software_mongo=/usr/bin/mongo bamboo_plan_storageTag=plan-177700889 bamboo_hg_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_hg-repositories-cache bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl bamboo_capability_system_jdk_JDK_1_8_0_66=/home/bamboo/jdk1.8.0_66 bamboo_planRepository_1_username= bamboo_planRepository_type=bbserver bamboo_git_cache_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4 bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.3.9 bamboo_tmp_directory=/home/bamboo/bamboo-agent-home/temp bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/CATS-PYC45-JOB1 bamboo_planKey=CATS-PYC45 bamboo_planRepository_1_repositoryUrl=ssh://git@opensource.ncsa.illinois.edu:7999/cats/pyclowder.git bamboo_planRepository_username= bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_66 bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41 bamboo_capability_system_builder_command_mkcrx=/home/bamboo/mkcrx/mkcrx.sh bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60 bamboo_repository_177831961_git_username= bamboo_planRepository_1_branchName=CATSPYC-19-add-anonymous-email-receiver-on-the-email-message |
| 29-Sep-2019 15:47:44 | Sending build context to Docker daemon 250.9kB |
| 29-Sep-2019 15:47:44 | |
| 29-Sep-2019 15:47:44 | Step 1/9 : FROM ubuntu:16.04 |
| 29-Sep-2019 15:47:44 | ---> 657d80a6401d |
| 29-Sep-2019 15:47:44 | Step 2/9 : ENV RABBITMQ_URI="amqp://guest:guest@rabbitmq:5672/%2F" RABBITMQ_EXCHANGE="clowder" RABBITMQ_QUEUE="" REGISTRATION_ENDPOINTS="" EMAIL_SERVER="" EMAIL_SENDER="sender" EMAIL_RECEIVER="receiver" MAIN_SCRIPT="" |
| 29-Sep-2019 15:47:45 | ---> Running in 93d7d09c826b |
| 29-Sep-2019 15:47:45 | Removing intermediate container 93d7d09c826b |
| 29-Sep-2019 15:47:45 | ---> 62687e3124cd |
| 29-Sep-2019 15:47:45 | Step 3/9 : RUN apt-get -q -q update && apt-get install -y --no-install-recommends python python-pip && pip install --upgrade setuptools && rm -rf /var/lib/apt/lists/* |
| 29-Sep-2019 15:47:45 | ---> Running in e3ebd02063b7 |
| 29-Sep-2019 15:47:55 | Reading package lists... |
| 29-Sep-2019 15:47:55 | Building dependency tree... |
| 29-Sep-2019 15:47:55 | Reading state information... |
| 29-Sep-2019 15:47:55 | The following additional packages will be installed: |
| 29-Sep-2019 15:47:55 | ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal |
| 29-Sep-2019 15:47:55 | libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl |
| 29-Sep-2019 15:47:55 | python-minimal python-pip-whl python2.7 python2.7-minimal |
| 29-Sep-2019 15:47:55 | Suggested packages: |
| 29-Sep-2019 15:47:55 | python-doc python-tk python2.7-doc binutils binfmt-support |
| 29-Sep-2019 15:47:55 | Recommended packages: |
| 29-Sep-2019 15:47:55 | file build-essential python-all-dev python-setuptools python-wheel |
| 29-Sep-2019 15:47:55 | The following NEW packages will be installed: |
| 29-Sep-2019 15:47:55 | ca-certificates libexpat1 libffi6 libpython-stdlib libpython2.7-minimal |
| 29-Sep-2019 15:47:55 | libpython2.7-stdlib libsqlite3-0 libssl1.0.0 mime-support openssl python |
| 29-Sep-2019 15:47:55 | python-minimal python-pip python-pip-whl python2.7 python2.7-minimal |
| 29-Sep-2019 15:47:56 | 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. |
| 29-Sep-2019 15:47:56 | Need to get 7397 kB of archives. |
| 29-Sep-2019 15:47:56 | After this operation, 24.8 MB of additional disk space will be used. |
| 29-Sep-2019 15:47:56 | Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.8 [339 kB] |
| 29-Sep-2019 15:47:56 | Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.8 [1261 kB] |
| 29-Sep-2019 15:47:57 | Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB] |
| 29-Sep-2019 15:47:58 | Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] |
| 29-Sep-2019 15:47:58 | Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1 amd64 2.1.0-7ubuntu0.16.04.5 [71.5 kB] |
| 29-Sep-2019 15:47:58 | Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB] |
| 29-Sep-2019 15:47:59 | Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1.2 [397 kB] |
| 29-Sep-2019 15:47:59 | Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.15 [1084 kB] |
| 29-Sep-2019 15:48:00 | Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.8 [1885 kB] |
| 29-Sep-2019 15:48:01 | Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.8 [224 kB] |
| 29-Sep-2019 15:48:02 | Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B] |
| 29-Sep-2019 15:48:02 | Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB] |
| 29-Sep-2019 15:48:02 | Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.15 [492 kB] |
| 29-Sep-2019 15:48:03 | Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB] |
| 29-Sep-2019 15:48:04 | Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip-whl all 8.1.1-2ubuntu0.4 [1110 kB] |
| 29-Sep-2019 15:48:05 | Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-pip all 8.1.1-2ubuntu0.4 [144 kB] |
| 29-Sep-2019 15:48:05 | debconf: delaying package configuration, since apt-utils is not installed |
| 29-Sep-2019 15:48:05 | Fetched 7397 kB in 9s (775 kB/s) |
| 29-Sep-2019 15:48:05 | Selecting previously unselected package libpython2.7-minimal:amd64. |
| 29-Sep-2019 15:48:05 | (Reading database ... |
| 29-Sep-2019 15:48:05 | (Reading database ... 5% |
| 29-Sep-2019 15:48:05 | (Reading database ... 10% |
| 29-Sep-2019 15:48:05 | (Reading database ... 15% |
| 29-Sep-2019 15:48:05 | (Reading database ... 20% |
| 29-Sep-2019 15:48:05 | (Reading database ... 25% |
| 29-Sep-2019 15:48:05 | (Reading database ... 30% |
| 29-Sep-2019 15:48:05 | (Reading database ... 35% |
| 29-Sep-2019 15:48:05 | (Reading database ... 40% |
| 29-Sep-2019 15:48:05 | (Reading database ... 45% |
| 29-Sep-2019 15:48:05 | (Reading database ... 50% |
| 29-Sep-2019 15:48:05 | (Reading database ... 55% |
| 29-Sep-2019 15:48:05 | (Reading database ... 60% |
| 29-Sep-2019 15:48:05 | (Reading database ... 65% |
| 29-Sep-2019 15:48:05 | (Reading database ... 70% |
| 29-Sep-2019 15:48:05 | (Reading database ... 75% |
| 29-Sep-2019 15:48:05 | (Reading database ... 80% |
| 29-Sep-2019 15:48:05 | (Reading database ... 85% |
| 29-Sep-2019 15:48:05 | (Reading database ... 90% |
| 29-Sep-2019 15:48:05 | (Reading database ... 95% |
| 29-Sep-2019 15:48:05 | (Reading database ... 100% |
| 29-Sep-2019 15:48:05 | (Reading database ... 4777 files and directories currently installed.) |
| 29-Sep-2019 15:48:05 | Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.8_amd64.deb ... |
| 29-Sep-2019 15:48:06 | Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.8) ... |
| 29-Sep-2019 15:48:06 | Selecting previously unselected package python2.7-minimal. |
| 29-Sep-2019 15:48:06 | Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.8_amd64.deb ... |
| 29-Sep-2019 15:48:06 | Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.8) ... |
| 29-Sep-2019 15:48:06 | Selecting previously unselected package python-minimal. |
| 29-Sep-2019 15:48:06 | Preparing to unpack .../python-minimal_2.7.12-1~16.04_amd64.deb ... |
| 29-Sep-2019 15:48:06 | Unpacking python-minimal (2.7.12-1~16.04) ... |
| 29-Sep-2019 15:48:07 | Selecting previously unselected package mime-support. |
| 29-Sep-2019 15:48:07 | Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... |
| 29-Sep-2019 15:48:07 | Unpacking mime-support (3.59ubuntu1) ... |
| 29-Sep-2019 15:48:07 | Selecting previously unselected package libexpat1:amd64. |
| 29-Sep-2019 15:48:07 | Preparing to unpack .../libexpat1_2.1.0-7ubuntu0.16.04.5_amd64.deb ... |
| 29-Sep-2019 15:48:07 | Unpacking libexpat1:amd64 (2.1.0-7ubuntu0.16.04.5) ... |
| 29-Sep-2019 15:48:07 | Selecting previously unselected package libffi6:amd64. |
| 29-Sep-2019 15:48:07 | Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ... |
| 29-Sep-2019 15:48:07 | Unpacking libffi6:amd64 (3.2.1-4) ... |
| 29-Sep-2019 15:48:08 | Selecting previously unselected package libsqlite3-0:amd64. |
| 29-Sep-2019 15:48:08 | Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1.2_amd64.deb ... |
| 29-Sep-2019 15:48:08 | Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1.2) ... |
| 29-Sep-2019 15:48:08 | Selecting previously unselected package libssl1.0.0:amd64. |
| 29-Sep-2019 15:48:08 | Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.15_amd64.deb ... |
| 29-Sep-2019 15:48:08 | Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ... |
| 29-Sep-2019 15:48:09 | Selecting previously unselected package libpython2.7-stdlib:amd64. |
| 29-Sep-2019 15:48:09 | Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.8_amd64.deb ... |
| 29-Sep-2019 15:48:09 | Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.8) ... |
| 29-Sep-2019 15:48:10 | Selecting previously unselected package python2.7. |
| 29-Sep-2019 15:48:10 | Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.8_amd64.deb ... |
| 29-Sep-2019 15:48:10 | Unpacking python2.7 (2.7.12-1ubuntu0~16.04.8) ... |
| 29-Sep-2019 15:48:10 | Selecting previously unselected package libpython-stdlib:amd64. |
| 29-Sep-2019 15:48:10 | Preparing to unpack .../libpython-stdlib_2.7.12-1~16.04_amd64.deb ... |
| 29-Sep-2019 15:48:10 | Unpacking libpython-stdlib:amd64 (2.7.12-1~16.04) ... |
| 29-Sep-2019 15:48:10 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 29-Sep-2019 15:48:11 | Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.8) ... |
| 29-Sep-2019 15:48:11 | Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.8) ... |
| 29-Sep-2019 15:48:11 | Linking and byte-compiling packages for runtime python2.7... |
| 29-Sep-2019 15:48:11 | Setting up python-minimal (2.7.12-1~16.04) ... |
| 29-Sep-2019 15:48:11 | Selecting previously unselected package python. |
| 29-Sep-2019 15:48:11 | (Reading database ... |
| 29-Sep-2019 15:48:11 | (Reading database ... 5% |
| 29-Sep-2019 15:48:11 | (Reading database ... 10% |
| 29-Sep-2019 15:48:11 | (Reading database ... 15% |
| 29-Sep-2019 15:48:11 | (Reading database ... 20% |
| 29-Sep-2019 15:48:11 | (Reading database ... 25% |
| 29-Sep-2019 15:48:11 | (Reading database ... 30% |
| 29-Sep-2019 15:48:11 | (Reading database ... 35% |
| 29-Sep-2019 15:48:11 | (Reading database ... 40% |
| 29-Sep-2019 15:48:11 | (Reading database ... 45% |
| 29-Sep-2019 15:48:11 | (Reading database ... 50% |
| 29-Sep-2019 15:48:11 | (Reading database ... 55% |
| 29-Sep-2019 15:48:11 | (Reading database ... 60% |
| 29-Sep-2019 15:48:11 | (Reading database ... 65% |
| 29-Sep-2019 15:48:11 | (Reading database ... 70% |
| 29-Sep-2019 15:48:11 | (Reading database ... 75% |
| 29-Sep-2019 15:48:11 | (Reading database ... 80% |
| 29-Sep-2019 15:48:11 | (Reading database ... 85% |
| 29-Sep-2019 15:48:11 | (Reading database ... 90% |
| 29-Sep-2019 15:48:11 | (Reading database ... 95% |
| 29-Sep-2019 15:48:11 | (Reading database ... 100% |
| 29-Sep-2019 15:48:11 | (Reading database ... 5588 files and directories currently installed.) |
| 29-Sep-2019 15:48:11 | Preparing to unpack .../python_2.7.12-1~16.04_amd64.deb ... |
| 29-Sep-2019 15:48:12 | Unpacking python (2.7.12-1~16.04) ... |
| 29-Sep-2019 15:48:12 | Selecting previously unselected package openssl. |
| 29-Sep-2019 15:48:12 | Preparing to unpack .../openssl_1.0.2g-1ubuntu4.15_amd64.deb ... |
| 29-Sep-2019 15:48:12 | Unpacking openssl (1.0.2g-1ubuntu4.15) ... |
| 29-Sep-2019 15:48:12 | Selecting previously unselected package ca-certificates. |
| 29-Sep-2019 15:48:12 | Preparing to unpack .../ca-certificates_20170717~16.04.2_all.deb ... |
| 29-Sep-2019 15:48:12 | Unpacking ca-certificates (20170717~16.04.2) ... |
| 29-Sep-2019 15:48:13 | Selecting previously unselected package python-pip-whl. |
| 29-Sep-2019 15:48:13 | Preparing to unpack .../python-pip-whl_8.1.1-2ubuntu0.4_all.deb ... |
| 29-Sep-2019 15:48:13 | Unpacking python-pip-whl (8.1.1-2ubuntu0.4) ... |
| 29-Sep-2019 15:48:14 | Selecting previously unselected package python-pip. |
| 29-Sep-2019 15:48:14 | Preparing to unpack .../python-pip_8.1.1-2ubuntu0.4_all.deb ... |
| 29-Sep-2019 15:48:14 | Unpacking python-pip (8.1.1-2ubuntu0.4) ... |
| 29-Sep-2019 15:48:14 | Setting up mime-support (3.59ubuntu1) ... |
| 29-Sep-2019 15:48:14 | Setting up libexpat1:amd64 (2.1.0-7ubuntu0.16.04.5) ... |
| 29-Sep-2019 15:48:15 | Setting up libffi6:amd64 (3.2.1-4) ... |
| 29-Sep-2019 15:48:15 | Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1.2) ... |
| 29-Sep-2019 15:48:15 | Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ... |
| 29-Sep-2019 15:48:15 | debconf: unable to initialize frontend: Dialog |
| 29-Sep-2019 15:48:15 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 29-Sep-2019 15:48:15 | debconf: falling back to frontend: Readline |
| 29-Sep-2019 15:48:15 | debconf: unable to initialize frontend: Readline |
| 29-Sep-2019 15:48:15 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
| 29-Sep-2019 15:48:15 | debconf: falling back to frontend: Teletype |
| 29-Sep-2019 15:48:15 | Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.8) ... |
| 29-Sep-2019 15:48:15 | Setting up python2.7 (2.7.12-1ubuntu0~16.04.8) ... |
| 29-Sep-2019 15:48:16 | Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ... |
| 29-Sep-2019 15:48:16 | Setting up python (2.7.12-1~16.04) ... |
| 29-Sep-2019 15:48:16 | Setting up openssl (1.0.2g-1ubuntu4.15) ... |
| 29-Sep-2019 15:48:17 | Setting up ca-certificates (20170717~16.04.2) ... |
| 29-Sep-2019 15:48:17 | debconf: unable to initialize frontend: Dialog |
| 29-Sep-2019 15:48:17 | debconf: (TERM is not set, so the dialog frontend is not usable.) |
| 29-Sep-2019 15:48:17 | debconf: falling back to frontend: Readline |
| 29-Sep-2019 15:48:17 | debconf: unable to initialize frontend: Readline |
| 29-Sep-2019 15:48:17 | debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.) |
| 29-Sep-2019 15:48:17 | debconf: falling back to frontend: Teletype |
| 29-Sep-2019 15:48:17 | Setting up python-pip-whl (8.1.1-2ubuntu0.4) ... |
| 29-Sep-2019 15:48:18 | Setting up python-pip (8.1.1-2ubuntu0.4) ... |
| 29-Sep-2019 15:48:19 | Processing triggers for libc-bin (2.23-0ubuntu11) ... |
| 29-Sep-2019 15:48:19 | Processing triggers for ca-certificates (20170717~16.04.2) ... |
| 29-Sep-2019 15:48:19 | Updating certificates in /etc/ssl/certs... |
| 29-Sep-2019 15:48:21 | 148 added, 0 removed; done. |
| 29-Sep-2019 15:48:21 | Running hooks in /etc/ca-certificates/update.d... |
| 29-Sep-2019 15:48:21 | done. |
| 29-Sep-2019 15:48:22 | Collecting setuptools |
| 29-Sep-2019 15:48:22 | Downloading https://files.pythonhosted.org/packages/b2/86/095d2f7829badc207c893dd4ac767e871f6cd547145df797ea26baea4e2e/setuptools-41.2.0-py2.py3-none-any.whl (576kB) |
| 29-Sep-2019 15:48:22 | Installing collected packages: setuptools |
| 29-Sep-2019 15:48:22 | Successfully installed setuptools-41.2.0 |
| 29-Sep-2019 15:48:22 | You are using pip version 8.1.1, however version 19.2.3 is available. |
| 29-Sep-2019 15:48:22 | You should consider upgrading via the 'pip install --upgrade pip' command. |
| 29-Sep-2019 15:48:24 | Removing intermediate container e3ebd02063b7 |
| 29-Sep-2019 15:48:24 | ---> 14204e17e3f3 |
| 29-Sep-2019 15:48:24 | Step 4/9 : COPY pyclowder /tmp/pyclowder/pyclowder |
| 29-Sep-2019 15:48:24 | ---> 1f2a385964f9 |
| 29-Sep-2019 15:48:24 | Step 5/9 : COPY setup.py description.rst /tmp/pyclowder/ |
| 29-Sep-2019 15:48:25 | ---> a51810047470 |
| 29-Sep-2019 15:48:25 | Step 6/9 : RUN pip install --upgrade /tmp/pyclowder && rm -rf /tmp/pyclowder |
| 29-Sep-2019 15:48:25 | ---> Running in 87183ac132f7 |
| 29-Sep-2019 15:48:26 | Processing /tmp/pyclowder |
| 29-Sep-2019 15:48:27 | Collecting enum34==1.1.6 (from pyclowder===2.1.1) |
| 29-Sep-2019 15:48:27 | Downloading https://files.pythonhosted.org/packages/c5/db/e56e6b4bbac7c4a06de1c50de6fe1ef3810018ae11732a50f15f62c7d050/enum34-1.1.6-py2-none-any.whl |
| 29-Sep-2019 15:48:27 | Collecting pika==0.11.2 (from pyclowder===2.1.1) |
| 29-Sep-2019 15:48:27 | Downloading https://files.pythonhosted.org/packages/76/b4/0ada6918ac79ce4d8d45d0ba436ee21a1ef685047fb1dde4d2de0178b327/pika-0.11.2-py2.py3-none-any.whl (107kB) |
| 29-Sep-2019 15:48:27 | Collecting PyYAML==3.12 (from pyclowder===2.1.1) |
| 29-Sep-2019 15:48:27 | Downloading https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz (253kB) |
| 29-Sep-2019 15:48:27 | Collecting requests==2.18.4 (from pyclowder===2.1.1) |
| 29-Sep-2019 15:48:27 | Downloading https://files.pythonhosted.org/packages/49/df/50aa1999ab9bde74656c2919d9c0c085fd2b3775fd3eca826012bef76d8c/requests-2.18.4-py2.py3-none-any.whl (88kB) |
| 29-Sep-2019 15:48:27 | Collecting certifi>=2017.4.17 (from requests==2.18.4->pyclowder===2.1.1) |
| 29-Sep-2019 15:48:27 | Downloading https://files.pythonhosted.org/packages/18/b0/8146a4f8dd402f60744fa380bc73ca47303cccf8b9190fd16a827281eac2/certifi-2019.9.11-py2.py3-none-any.whl (154kB) |
| 29-Sep-2019 15:48:27 | Collecting chardet<3.1.0,>=3.0.2 (from requests==2.18.4->pyclowder===2.1.1) |
| 29-Sep-2019 15:48:27 | Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) |
| 29-Sep-2019 15:48:27 | Collecting idna<2.7,>=2.5 (from requests==2.18.4->pyclowder===2.1.1) |
| 29-Sep-2019 15:48:27 | Downloading https://files.pythonhosted.org/packages/27/cc/6dd9a3869f15c2edfab863b992838277279ce92663d334df9ecf5106f5c6/idna-2.6-py2.py3-none-any.whl (56kB) |
| 29-Sep-2019 15:48:27 | Collecting urllib3<1.23,>=1.21.1 (from requests==2.18.4->pyclowder===2.1.1) |
| 29-Sep-2019 15:48:28 | Downloading https://files.pythonhosted.org/packages/63/cb/6965947c13a94236f6d4b8223e21beb4d576dc72e8130bd7880f600839b8/urllib3-1.22-py2.py3-none-any.whl (132kB) |
| 29-Sep-2019 15:48:28 | Building wheels for collected packages: PyYAML |
| 29-Sep-2019 15:48:28 | Running setup.py bdist_wheel for PyYAML: started |
| 29-Sep-2019 15:48:28 | Running setup.py bdist_wheel for PyYAML: finished with status 'error' |
| 29-Sep-2019 15:48:28 | Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-I7ZGoi/PyYAML/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /tmp/tmpXmjgaWpip-wheel- --python-tag cp27: |
| 29-Sep-2019 15:48:28 | usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] |
| 29-Sep-2019 15:48:28 | or: -c --help [cmd1 cmd2 ...] |
| 29-Sep-2019 15:48:28 | or: -c --help-commands |
| 29-Sep-2019 15:48:28 | or: -c cmd --help |
| 29-Sep-2019 15:48:28 | |
| 29-Sep-2019 15:48:28 | error: invalid command 'bdist_wheel' |
| 29-Sep-2019 15:48:28 | |
| 29-Sep-2019 15:48:28 | ---------------------------------------- |
| 29-Sep-2019 15:48:28 | Failed building wheel for PyYAML |
| 29-Sep-2019 15:48:28 | Running setup.py clean for PyYAML |
| 29-Sep-2019 15:48:28 | Failed to build PyYAML |
| 29-Sep-2019 15:48:28 | Installing collected packages: enum34, pika, PyYAML, certifi, chardet, idna, urllib3, requests, pyclowder |
| 29-Sep-2019 15:48:28 | Running setup.py install for PyYAML: started |
| 29-Sep-2019 15:48:28 | Running setup.py install for PyYAML: finished with status 'done' |
| 29-Sep-2019 15:48:28 | Running setup.py install for pyclowder: started |
| 29-Sep-2019 15:48:29 | Running setup.py install for pyclowder: finished with status 'done' |
| 29-Sep-2019 15:48:29 | Successfully installed PyYAML-3.12 certifi-2019.9.11 chardet-3.0.4 enum34-1.1.6 idna-2.6 pika-0.11.2 pyclowder-2.1.1 requests-2.18.4 urllib3-1.22 |
| 29-Sep-2019 15:48:29 | You are using pip version 8.1.1, however version 19.2.3 is available. |
| 29-Sep-2019 15:48:29 | You should consider upgrading via the 'pip install --upgrade pip' command. |
| 29-Sep-2019 15:48:30 | Removing intermediate container 87183ac132f7 |
| 29-Sep-2019 15:48:30 | ---> 5f3beb201673 |
| 29-Sep-2019 15:48:30 | Step 7/9 : WORKDIR /home/clowder |
| 29-Sep-2019 15:48:30 | ---> Running in 1f478586510e |
| 29-Sep-2019 15:48:30 | Removing intermediate container 1f478586510e |
| 29-Sep-2019 15:48:30 | ---> 22538847949f |
| 29-Sep-2019 15:48:30 | Step 8/9 : COPY notifications.json /home/clowder |
| 29-Sep-2019 15:48:31 | ---> e888004281ff |
| 29-Sep-2019 15:48:31 | Step 9/9 : CMD python "./${MAIN_SCRIPT}" |
| 29-Sep-2019 15:48:31 | ---> Running in 66625c7eaf26 |
| 29-Sep-2019 15:48:31 | Removing intermediate container 66625c7eaf26 |
| 29-Sep-2019 15:48:31 | ---> b4aba801ab28 |
| 29-Sep-2019 15:48:31 | Successfully built b4aba801ab28 |
| 29-Sep-2019 15:48:31 | Successfully tagged clowder/pyclowder:latest |
| 29-Sep-2019 15:48:31 | Sending build context to Docker daemon 249.3kB |
| 29-Sep-2019 15:48:31 | |
| 29-Sep-2019 15:48:31 | Step 1/6 : FROM clowder/pyclowder |
| 29-Sep-2019 15:48:31 | ---> b4aba801ab28 |
| 29-Sep-2019 15:48:31 | Step 2/6 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:48:31 | ---> Running in 1bdab9c2f3ac |
| 29-Sep-2019 15:48:32 | Removing intermediate container 1bdab9c2f3ac |
| 29-Sep-2019 15:48:32 | ---> 37001c81ac5a |
| 29-Sep-2019 15:48:32 | Step 3/6 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-Sep-2019 15:48:32 | ---> Running in a9d770f1ceb6 |
| 29-Sep-2019 15:48:33 | Removing intermediate container a9d770f1ceb6 |
| 29-Sep-2019 15:48:33 | ---> cb007d36cd8c |
| 29-Sep-2019 15:48:33 | Step 4/6 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:48:33 | ---> Running in 57e3646613cf |
| 29-Sep-2019 15:48:33 | Removing intermediate container 57e3646613cf |
| 29-Sep-2019 15:48:33 | ---> 1bf84e7820ae |
| 29-Sep-2019 15:48:33 | Step 5/6 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-Sep-2019 15:48:33 | ---> Running in 6a66f7ea68de |
| 29-Sep-2019 15:48:34 | Removing intermediate container 6a66f7ea68de |
| 29-Sep-2019 15:48:34 | ---> 83cdd2d0686a |
| 29-Sep-2019 15:48:34 | Step 6/6 : ONBUILD ADD . /home/clowder/ |
| 29-Sep-2019 15:48:34 | ---> Running in 417ac82b88f5 |
| 29-Sep-2019 15:48:34 | Removing intermediate container 417ac82b88f5 |
| 29-Sep-2019 15:48:34 | ---> 079edcd82125 |
| 29-Sep-2019 15:48:34 | Successfully built 079edcd82125 |
| 29-Sep-2019 15:48:34 | Successfully tagged clowder/pyclowder:onbuild |
| 29-Sep-2019 15:48:34 | Sending build context to Docker daemon 12.29kB |
| 29-Sep-2019 15:48:34 | |
| 29-Sep-2019 15:48:34 | Step 1/5 : FROM clowder/pyclowder:onbuild |
| 29-Sep-2019 15:48:34 | # Executing 5 build triggers |
| 29-Sep-2019 15:48:35 | ---> Running in e4c270bfd974 |
| 29-Sep-2019 15:48:36 | Removing intermediate container e4c270bfd974 |
| 29-Sep-2019 15:48:37 | ---> Running in b256752cc9b7 |
| 29-Sep-2019 15:48:39 | Removing intermediate container b256752cc9b7 |
| 29-Sep-2019 15:48:39 | ---> 0920ba184a83 |
| 29-Sep-2019 15:48:39 | Step 2/5 : ENV MAIN_SCRIPT="binary_extractor.py" RABBITMQ_QUEUE="" IMAGE_BINARY="" IMAGE_TYPE="" IMAGE_THUMBNAIL_COMMAND="" IMAGE_PREVIEW_COMMAND="" PREVIEW_BINARY="" PREVIEW_TYPE="" PREVIEW_COMMAND="" |
| 29-Sep-2019 15:48:39 | ---> Running in bcc4e0d19711 |
| 29-Sep-2019 15:48:40 | Removing intermediate container bcc4e0d19711 |
| 29-Sep-2019 15:48:40 | ---> ff09808e86a8 |
| 29-Sep-2019 15:48:40 | Step 3/5 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:48:40 | ---> Running in 86da6bd9851f |
| 29-Sep-2019 15:48:40 | Removing intermediate container 86da6bd9851f |
| 29-Sep-2019 15:48:40 | ---> 84e3d1088d88 |
| 29-Sep-2019 15:48:40 | Step 4/5 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-Sep-2019 15:48:41 | ---> Running in 4ec83dcd3cc9 |
| 29-Sep-2019 15:48:41 | Removing intermediate container 4ec83dcd3cc9 |
| 29-Sep-2019 15:48:41 | ---> 7075b972da79 |
| 29-Sep-2019 15:48:41 | Step 5/5 : ONBUILD COPY extractor_info.json /home/clowder/ |
| 29-Sep-2019 15:48:42 | ---> Running in e1a3a31aa6c9 |
| 29-Sep-2019 15:48:42 | Removing intermediate container e1a3a31aa6c9 |
| 29-Sep-2019 15:48:42 | ---> d834efe227e6 |
| 29-Sep-2019 15:48:42 | Successfully built d834efe227e6 |
| 29-Sep-2019 15:48:42 | Successfully tagged clowder/extractors-binary-preview:onbuild |
| 29-Sep-2019 15:48:42 | Sending build context to Docker daemon 6.656kB |
| 29-Sep-2019 15:48:42 | |
| 29-Sep-2019 15:48:42 | Step 1/9 : FROM clowder/pyclowder:onbuild |
| 29-Sep-2019 15:48:42 | # Executing 5 build triggers |
| 29-Sep-2019 15:48:43 | ---> Running in e25970052bb5 |
| 29-Sep-2019 15:48:44 | Removing intermediate container e25970052bb5 |
| 29-Sep-2019 15:48:45 | ---> Running in e8b05ac18bec |
| 29-Sep-2019 15:48:46 | Removing intermediate container e8b05ac18bec |
| 29-Sep-2019 15:48:47 | ---> 9b7b02f18629 |
| 29-Sep-2019 15:48:47 | Step 2/9 : ENV EXTRACTION_FUNC="" |
| 29-Sep-2019 15:48:47 | ---> Running in 200bb35609bc |
| 29-Sep-2019 15:48:47 | Removing intermediate container 200bb35609bc |
| 29-Sep-2019 15:48:47 | ---> 103a072036d4 |
| 29-Sep-2019 15:48:47 | Step 3/9 : ENV EXTRACTION_MODULE="" |
| 29-Sep-2019 15:48:47 | ---> Running in 715cdd77ec85 |
| 29-Sep-2019 15:48:48 | Removing intermediate container 715cdd77ec85 |
| 29-Sep-2019 15:48:48 | ---> a202d5ece980 |
| 29-Sep-2019 15:48:48 | Step 4/9 : ONBUILD COPY packages.* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:48:48 | ---> Running in 37f02a34657f |
| 29-Sep-2019 15:48:48 | Removing intermediate container 37f02a34657f |
| 29-Sep-2019 15:48:48 | ---> 00ad08c21cc3 |
| 29-Sep-2019 15:48:48 | Step 5/9 : ONBUILD RUN if [ -e packages.apt ]; then apt-get -q -q update && xargs apt-get -y install --no-install-recommends < packages.apt && rm -rf /var/lib/apt/lists/*; fi |
| 29-Sep-2019 15:48:48 | ---> Running in a74072c99672 |
| 29-Sep-2019 15:48:49 | Removing intermediate container a74072c99672 |
| 29-Sep-2019 15:48:49 | ---> 6d0528441d10 |
| 29-Sep-2019 15:48:49 | Step 6/9 : ONBUILD COPY requirements.txt* Dockerfile /home/clowder/ |
| 29-Sep-2019 15:48:49 | ---> Running in 3b1afb5f7600 |
| 29-Sep-2019 15:48:49 | Removing intermediate container 3b1afb5f7600 |
| 29-Sep-2019 15:48:49 | ---> 6cd5ebed00dc |
| 29-Sep-2019 15:48:49 | Step 7/9 : ONBUILD RUN if [ -e requirements.txt ]; then pip install --no-cache-dir -r requirements.txt; fi |
| 29-Sep-2019 15:48:49 | ---> Running in 950860e64f1c |
| 29-Sep-2019 15:48:50 | Removing intermediate container 950860e64f1c |
| 29-Sep-2019 15:48:50 | ---> 4f263cfa3bbd |
| 29-Sep-2019 15:48:50 | Step 8/9 : ONBUILD ADD . /home/clowder/ |
| 29-Sep-2019 15:48:50 | ---> Running in 9a15fef6ea98 |
| 29-Sep-2019 15:48:50 | Removing intermediate container 9a15fef6ea98 |
| 29-Sep-2019 15:48:50 | ---> 8a71839ed4ec |
| 29-Sep-2019 15:48:50 | Step 9/9 : CMD python -c "from simple_extractor import SimplePythonExtractor; from ${EXTRACTION_MODULE} import *; SimplePythonExtractor(${EXTRACTION_FUNC}).start()" |
| 29-Sep-2019 15:48:50 | ---> Running in e7cd75e23bb8 |
| 29-Sep-2019 15:48:51 | Removing intermediate container e7cd75e23bb8 |
| 29-Sep-2019 15:48:51 | ---> fcb0fc4cfc88 |
| 29-Sep-2019 15:48:51 | Successfully built fcb0fc4cfc88 |
| 29-Sep-2019 15:48:51 | Successfully tagged clowder/extractors-simple-extractor:onbuild |
| 29-Sep-2019 15:48:51 | Sending build context to Docker daemon 13.31kB |
| 29-Sep-2019 15:48:51 | |
| 29-Sep-2019 15:48:51 | Step 1/10 : FROM clowder/pyclowder:latest |
| 29-Sep-2019 15:48:51 | ---> b4aba801ab28 |
| 29-Sep-2019 15:48:51 | Step 2/10 : ENV R_SCRIPT="" R_FUNCTION="" |
| 29-Sep-2019 15:48:51 | ---> Running in 63f10df2ec78 |
| 29-Sep-2019 15:48:52 | Removing intermediate container 63f10df2ec78 |
| 29-Sep-2019 15:48:52 | ---> 503a317135c1 |
| 29-Sep-2019 15:48:52 | Step 3/10 : RUN echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))" |
| 29-Sep-2019 15:48:52 | ---> Running in ea1360641edc |
| 29-Sep-2019 15:48:53 | Executing: /tmp/tmp.3jfKwZWlcR/gpg.1.sh --keyserver |
| 29-Sep-2019 15:48:53 | keyserver.ubuntu.com |
| 29-Sep-2019 15:48:53 | --recv |
| 29-Sep-2019 15:48:53 | E084DAB9 |
| 29-Sep-2019 15:48:53 | gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com |
| 29-Sep-2019 15:48:53 | gpg: key E084DAB9: public key "Totally Legit Signing Key <mallory@example.org>" imported |
| 29-Sep-2019 15:48:53 | gpg: Total number processed: 1 |
| 29-Sep-2019 15:48:53 | gpg: imported: 1 (RSA: 1) |
| 29-Sep-2019 15:49:01 | W: GPG error: http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9 |
| 29-Sep-2019 15:49:01 | W: The repository 'http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease' is not signed. |
| 29-Sep-2019 15:49:02 | Reading package lists... |
| 29-Sep-2019 15:49:02 | Building dependency tree... |
| 29-Sep-2019 15:49:02 | Reading state information... |
| 29-Sep-2019 15:49:02 | The following additional packages will be installed: |
| 29-Sep-2019 15:49:02 | autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 |
| 29-Sep-2019 15:49:02 | cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev |
| 29-Sep-2019 15:49:02 | file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 |
| 29-Sep-2019 15:49:02 | gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool |
| 29-Sep-2019 15:49:02 | intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal |
| 29-Sep-2019 15:49:02 | libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev |
| 29-Sep-2019 15:49:02 | libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 |
| 29-Sep-2019 15:49:02 | libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl |
| 29-Sep-2019 15:49:02 | libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev |
| 29-Sep-2019 15:49:02 | libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 |
| 29-Sep-2019 15:49:02 | libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b |
| 29-Sep-2019 15:49:02 | libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 |
| 29-Sep-2019 15:49:02 | libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl |
| 29-Sep-2019 15:49:02 | libhttp-cookies-perl libhttp-date-perl libhttp-message-perl |
| 29-Sep-2019 15:49:02 | libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 |
| 29-Sep-2019 15:49:02 | libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 |
| 29-Sep-2019 15:49:02 | libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev |
| 29-Sep-2019 15:49:02 | libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 |
| 29-Sep-2019 15:49:02 | liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl |
| 29-Sep-2019 15:49:02 | liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 |
| 29-Sep-2019 15:49:02 | libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 |
| 29-Sep-2019 15:49:02 | libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils |
| 29-Sep-2019 15:49:02 | libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 |
| 29-Sep-2019 15:49:02 | libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 |
| 29-Sep-2019 15:49:02 | libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 |
| 29-Sep-2019 15:49:02 | libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 |
| 29-Sep-2019 15:49:02 | libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 |
| 29-Sep-2019 15:49:02 | libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl |
| 29-Sep-2019 15:49:02 | libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 |
| 29-Sep-2019 15:49:02 | libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 |
| 29-Sep-2019 15:49:02 | libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase |
| 29-Sep-2019 15:49:02 | patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources |
| 29-Sep-2019 15:49:02 | python-scour python-six tzdata ucf unzip x11-common xauth xdg-utils xz-utils |
| 29-Sep-2019 15:49:02 | zip zlib1g-dev |
| 29-Sep-2019 15:49:02 | Suggested packages: |
| 29-Sep-2019 15:49:02 | autoconf-archive gnu-standards autoconf-doc libtool binutils-doc wamerican |
| 29-Sep-2019 15:49:02 | | wordlist whois vacation bzip2-doc devscripts cpp-doc gcc-5-locales dh-make |
| 29-Sep-2019 15:49:02 | debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg |
| 29-Sep-2019 15:49:02 | gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-5-multilib libgcc1-dbg |
| 29-Sep-2019 15:49:02 | libgomp1-dbg libitm1-dbg libatomic1-dbg libasan2-dbg liblsan0-dbg |
| 29-Sep-2019 15:49:02 | libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg |
| 29-Sep-2019 15:49:02 | gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib |
| 29-Sep-2019 15:49:02 | gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc |
| 29-Sep-2019 15:49:02 | glibc-doc gnutls-bin krb5-doc krb5-user libdata-dump-perl icu-doc |
| 29-Sep-2019 15:49:02 | libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc libstdc++-5-doc |
| 29-Sep-2019 15:49:02 | tcl8.6 tk8.6 libauthen-ntlm-perl make-doc less www-browser ed diffutils-doc |
| 29-Sep-2019 15:49:02 | perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl |
| 29-Sep-2019 15:49:02 | libmail-box-perl python-setuptools python-rsvg python-cairo ess r-doc-info |
| 29-Sep-2019 15:49:02 | | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base |
| 29-Sep-2019 15:49:02 | texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra |
| 29-Sep-2019 15:49:02 | texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo |
| 29-Sep-2019 15:49:02 | gvfs-bin |
| 29-Sep-2019 15:49:02 | Recommended packages: |
| 29-Sep-2019 15:49:02 | fakeroot libalgorithm-merge-perl curl | wget | lynx-cur libasprintf-dev |
| 29-Sep-2019 15:49:02 | libgettextpo-dev bzip2-doc manpages manpages-dev libfile-fcntllock-perl |
| 29-Sep-2019 15:49:02 | libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl |
| 29-Sep-2019 15:49:02 | krb5-locales libsasl2-modules libhtml-form-perl libhttp-daemon-perl |
| 29-Sep-2019 15:49:02 | libmailtools-perl xml-core ifupdown rename libmail-sendmail-perl |
| 29-Sep-2019 15:49:02 | r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl |
| 29-Sep-2019 15:49:02 | libx11-protocol-perl x11-utils x11-xserver-utils |
| 29-Sep-2019 15:49:02 | The following NEW packages will be installed: |
| 29-Sep-2019 15:49:02 | autoconf automake autotools-dev binutils bsdmainutils build-essential bzip2 |
| 29-Sep-2019 15:49:02 | cdbs cpp cpp-5 debhelper dh-strip-nondeterminism dh-translations dpkg-dev |
| 29-Sep-2019 15:49:02 | file fontconfig fontconfig-config fonts-dejavu-core g++ g++-5 gcc gcc-5 |
| 29-Sep-2019 15:49:02 | gettext gettext-base gfortran gfortran-5 groff-base icu-devtools intltool |
| 29-Sep-2019 15:49:02 | intltool-debian libarchive-zip-perl libasan2 libasn1-8-heimdal |
| 29-Sep-2019 15:49:02 | libasprintf0v5 libatomic1 libblas-common libblas-dev libblas3 libbz2-dev |
| 29-Sep-2019 15:49:02 | libc-dev-bin libc6-dev libcairo2 libcc1-0 libcilkrts5 libcroco3 libcurl3 |
| 29-Sep-2019 15:49:02 | libdatrie1 libdpkg-perl libencode-locale-perl libfile-listing-perl |
| 29-Sep-2019 15:49:02 | libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-5-dev |
| 29-Sep-2019 15:49:02 | libgdbm3 libgfortran-5-dev libgfortran3 libglib2.0-0 libgmp10 libgnutls30 |
| 29-Sep-2019 15:49:02 | libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b |
| 29-Sep-2019 15:49:02 | libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 |
| 29-Sep-2019 15:49:02 | libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl |
| 29-Sep-2019 15:49:02 | libhttp-cookies-perl libhttp-date-perl libhttp-message-perl |
| 29-Sep-2019 15:49:02 | libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu55 |
| 29-Sep-2019 15:49:02 | libidn11 libio-html-perl libio-socket-ssl-perl libisl15 libitm1 libjbig0 |
| 29-Sep-2019 15:49:02 | libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev |
| 29-Sep-2019 15:49:02 | libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 |
| 29-Sep-2019 15:49:02 | liblapack-dev liblapack3 libldap-2.4-2 liblsan0 liblwp-mediatypes-perl |
| 29-Sep-2019 15:49:02 | liblwp-protocol-https-perl liblzma-dev libmagic1 libmpc3 libmpfr4 libmpx0 |
| 29-Sep-2019 15:49:02 | libncurses5-dev libnet-http-perl libnet-ssleay-perl libnettle6 libp11-kit0 |
| 29-Sep-2019 15:49:02 | libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils |
| 29-Sep-2019 15:49:02 | libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22 |
| 29-Sep-2019 15:49:02 | libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 |
| 29-Sep-2019 15:49:02 | libreadline-dev libreadline6-dev libroken18-heimdal librtmp1 libsasl2-2 |
| 29-Sep-2019 15:49:02 | libsasl2-modules-db libsigsegv2 libsm6 libstdc++-5-dev libtasn1-6 libtcl8.6 |
| 29-Sep-2019 15:49:02 | libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 |
| 29-Sep-2019 15:49:02 | libtsan0 libubsan0 libunistring0 liburi-perl libwind0-heimdal libwww-perl |
| 29-Sep-2019 15:49:02 | libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 |
| 29-Sep-2019 15:49:02 | libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 |
| 29-Sep-2019 15:49:02 | libxmuu1 libxrender1 libxss1 libxt6 linux-libc-dev m4 make man-db netbase |
| 29-Sep-2019 15:49:02 | patch perl perl-modules-5.22 pkg-config po-debconf python-pkg-resources |
| 29-Sep-2019 15:49:02 | python-scour python-six r-base-core r-base-dev tzdata ucf unzip x11-common |
| 29-Sep-2019 15:49:02 | xauth xdg-utils xz-utils zip zlib1g-dev |
| 29-Sep-2019 15:49:03 | 0 upgraded, 190 newly installed, 0 to remove and 0 not upgraded. |
| 29-Sep-2019 15:49:03 | Need to get 116 MB of archives. |
| 29-Sep-2019 15:49:03 | After this operation, 416 MB of additional disk space will be used. |
| 29-Sep-2019 15:49:03 | WARNING: The following packages cannot be authenticated! |
| 29-Sep-2019 15:49:03 | r-base-core r-base-dev |
| 29-Sep-2019 15:49:03 | E: There were unauthenticated packages and -y was used without --allow-unauthenticated |
| 29-Sep-2019 15:49:03 | The command '/bin/sh -c echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/R.list && apt-key adv --keyserver keyserver.ubuntu.com --recv E084DAB9 && apt-get -q -q update && apt-get -y install --no-install-recommends r-base-core r-base-dev && rm -rf /var/lib/apt/lists/* && Rscript --vanilla -e "install.packages('jsonlite', repos='http://cran.rstudio.com/'); print(system.file(package = 'jsonlite')); q(status=as.integer(system.file(package = 'jsonlite') == ''))"' returned a non-zero code: 100 |
| 29-Sep-2019 15:49:03 | |
| 29-Sep-2019 15:49:03 | Failing task since return code of [/bin/sh docker.sh] was 100 while expected 0 |
| 29-Sep-2019 15:49:03 | Finished task 'docker build and push' with result: Failed |
| 29-Sep-2019 15:49:03 | Running post build plugin 'Docker Container Cleanup' |
| 29-Sep-2019 15:49:03 | Running post build plugin 'NCover Results Collector' |
| 29-Sep-2019 15:49:03 | Running post build plugin 'Clover Results Collector' |
| 29-Sep-2019 15:49:03 | Running post build plugin 'npm Cache Cleanup' |
| 29-Sep-2019 15:49:03 | Running post build plugin 'Artifact Copier' |
| 29-Sep-2019 15:49:03 | Finalising the build... |
| 29-Sep-2019 15:49:03 | Stopping timer. |
| 29-Sep-2019 15:49:03 | Build CATS-PYC45-JOB1-1 completed. |
| 29-Sep-2019 15:49:03 | Running on server: post build plugin 'NCover Results Collector' |
| 29-Sep-2019 15:49:03 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 29-Sep-2019 15:49:03 | Running on server: post build plugin 'Clover Delta Calculator' |
| 29-Sep-2019 15:49:03 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 29-Sep-2019 15:49:03 | All post build plugins have finished |
| 29-Sep-2019 15:49:03 | Generating build results summary... |
| 29-Sep-2019 15:49:03 | Saving build results to disk... |
| 29-Sep-2019 15:49:03 | Logging substituted variables... |
| 29-Sep-2019 15:49:03 | Indexing build results... |
| 29-Sep-2019 15:49:03 | Finished building CATS-PYC45-JOB1-1. |