medici-gwt-web

• 

  Jim Myers 01 Jun 2016 61aded5b9ba788834302301e7c423a24b9abc10f

  per Rob - these are the dependencies for Ubuntu 14.04

  • scripts/acr/install.sh (version 61aded5b9ba788834302301e7c423a24b9abc10f)
• 

  Jim Myers 25 May 2016 25c5a47cc07b924846ccfb864d2b1f85732597cc

  remove metadata that is specific to the live copy when generating oremap - use version info to point to prior versions from the ORE Aggregation

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 25c5a47cc07b924846ccfb864d2b1f85732597cc)
• 

  Jim Myers 20 May 2016 5560de851701faa9dd5f6124edeb5397574011ab

  cut/paste typo on column name...

  • medici-ingest/src/main/java/org/sead/acr/tools/medici/FixityCheck.java (version 5560de851701faa9dd5f6124edeb5397574011ab)
• 

  Jim Myers 20 May 2016 8ade2471debf71e9e8ff3458d7c4203c8dfad484

  When trying to add missing hashes, only count/skip/process entries that do not have a hash...

  • medici-ingest/src/main/java/org/sead/acr/tools/medici/FixityCheck.java (version 8ade2471debf71e9e8ff3458d7c4203c8dfad484)
• 

  Jim Myers 20 May 2016 41181f758d1e513a9f552895ee8f0afa236d8cba

  updates to allow: adding missing hashes, only scanning non-deleted items, adding hashes in metadataonly mode for performance, stop scanning at the limit # of entries in remove previews, ...

  • medici-ingest/.classpath (version 41181f758d1e513a9f552895ee8f0afa236d8cba)
  • medici-ingest/src/main/java/org/sead/acr/tools/medici/FixityCheck.java (version 41181f758d1e513a9f552895ee8f0afa236d8cba)
  • medici-ingest/src/main/java/org/sead/acr/tools/medici/RemovePreviews.java (version 41181f758d1e513a9f552895ee8f0afa236d8cba)
• 

  Jim Myers 12 May 2016 4b80958ee5d3eb2c964ea1547fdcfafbec856e05

  thread safe hashmap for upload keys + pretty printing of dashboard.js

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/UploadBlob.java (version 4b80958ee5d3eb2c964ea1547fdcfafbec856e05)
  • edu.illinois.ncsa.mmdb.web/war/js/dashboard.js (version 4b80958ee5d3eb2c964ea1547fdcfafbec856e05)
• 

  Jim Myers 07 May 2016 f71e57ad64a5bcecd120c306e19aa44aa512ed47

  Adding one-shot token to support long (>session timeout) uploads that are cached/delayed by nginx. Fix in server and upload client. Removed vestigial upload applet code. Fixed typo bug in collection upload that did not set the top collection flag.

  • SEADUploader/src/org/sead/acr/client/SEADUploader.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/UploadWidget.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/dispatch/GetUploadDestination.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/dispatch/GetUploadDestinationResult.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/UploadPage.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/MyActionHandlersConfig.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/TupeloStore.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/UploadBlob.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetUploadDestinationHandler.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/CollectionsRestService.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/DatasetsRestService.java (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
  • edu.illinois.ncsa.mmdb.web/war/js/uploader.js (version f71e57ad64a5bcecd120c306e19aa44aa512ed47)
• 

  Jim Myers 28 Apr 2016 123243cf0d2bbccb1d2c2bada41209be9b94d569

  handle possibility of repository republishing a collection using the same pid (fwiw - will not work if the same pid is used to publish a different collection)

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 123243cf0d2bbccb1d2c2bada41209be9b94d569)
• 

  Jim Myers 28 Apr 2016 8dbf95809edf8ee6252bc379628b53222a275b2b

  published collection stats updateed to address 2.0 publishing of multiple versions and published vers of deleted collections

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/SystemInfoHandler.java (version 8dbf95809edf8ee6252bc379628b53222a275b2b)
• 

  Jim Myers 28 Apr 2016 757e297587ef261be2cff2a651fb0bef2aff788a

  updated list of spaces...

  • community/src/servermap.properties (version 757e297587ef261be2cff2a651fb0bef2aff788a)
• 

  Jim Myers 27 Apr 2016 2907b93c5a84e0ebbdcecb987cc3aeb4750502f1

  script updates from Rob merged with updates from the 1.5.2-fixes branch

  • scripts/acr/install.sh (version 2907b93c5a84e0ebbdcecb987cc3aeb4750502f1)
• 

  Jim Myers 19 Apr 2016 ed0fa8eca1ad08e9decc7ec18f667ce56ccd08ae

  remove duplicate context info for preferences

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RequestPublicationHandler.java (version ed0fa8eca1ad08e9decc7ec18f667ce56ccd08ae)
• 

  Jim Myers 19 Apr 2016 4f55b915e204268b22f2027c5841c761e180627a

  iter.next() fails if !hasNext() - old code checked for null value

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ResearchObjectsRestService.java (version 4f55b915e204268b22f2027c5841c761e180627a)
• 

  Jim Myers 19 Apr 2016 2196423c8ea8aabf77f942bfe7818dd44d11a13e

  feedback when email has been sent

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/NotEnabledPage.java (version 2196423c8ea8aabf77f942bfe7818dd44d11a13e)
• 

  Jim Myers 19 Apr 2016 98cd031f00ac2927e2de879e532ffb85a2133c53

  typo - action to let through (for signup) is GetUser

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/MyDispatchServiceServlet.java (version 98cd031f00ac2927e2de879e532ffb85a2133c53)
• 

  Jim Myers 19 Apr 2016 efd643a5f92ea19de8fe202c1035f522d6034508

  deubg/trace changes

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/Mail.java (version efd643a5f92ea19de8fe202c1035f522d6034508)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/EmailAdminsHandler.java (version efd643a5f92ea19de8fe202c1035f522d6034508)
• 

  Jim Myers 19 Apr 2016 dfb9ff94747e1a818e07f084f0ca93b33e5479e7

  Contact SEAD form should go to SEAD admins, not local space admins...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/JiraIssueHandler.java (version dfb9ff94747e1a818e07f084f0ca93b33e5479e7)
• 

  Jim Myers 19 Apr 2016 10b75e7b9c5bac10598b2fcb0bbe9474fa424460

  updating URLs to https

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/Mail.java (version 10b75e7b9c5bac10598b2fcb0bbe9474fa424460)
• 

  Jim Myers 19 Apr 2016 cb7ca826754f2bcf556f8ebf48354619b5119f5e

  add asynch dispatch to Not Enabled page to allow email callback

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/MMDB.java (version cb7ca826754f2bcf556f8ebf48354619b5119f5e)
• 

  Jim Myers 19 Apr 2016 25517d07c41d470d0751f2aa8d81a97c803c9988

  bug fix in Google new user signup flow

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GoogleUserInfoHandler.java (version 25517d07c41d470d0751f2aa8d81a97c803c9988)
• 

  Jim Myers 19 Apr 2016 78a783d7d47a7bc4c1447821f4cbf0306b3f03ff

  Handle case where user has been retired and has no permissions - by adding a general mechanism for emailing admins when there's a permission issue (new user, no perms yet, existing user, not enough permissions to do x, retired user needing perms restored) with some context-sensitive instructions.

  • edu.illinois.ncsa.mmdb.web/.classpath (version 78a783d7d47a7bc4c1447821f4cbf0306b3f03ff)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/dispatch/EmailAdmins.java (version 78a783d7d47a7bc4c1447821f4cbf0306b3f03ff)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/dispatch/GetRolesResult.java (version 78a783d7d47a7bc4c1447821f4cbf0306b3f03ff)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/NotEnabledPage.java (version 78a783d7d47a7bc4c1447821f4cbf0306b3f03ff)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/SignupPage.java (version 78a783d7d47a7bc4c1447821f4cbf0306b3f03ff)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/MyActionHandlersConfig.java (version 78a783d7d47a7bc4c1447821f4cbf0306b3f03ff)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/MyDispatchServiceServlet.java (version 78a783d7d47a7bc4c1447821f4cbf0306b3f03ff)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/EmailAdminsHandler.java (version 78a783d7d47a7bc4c1447821f4cbf0306b3f03ff)
• 

  Jim Myers 14 Apr 2016 76339fc8a129fd11d2a56a9c6040099663164d7a

  switch order of operations so an extraction exception can't affect state of add/remove and top-level status (have seen these get out of synch, but can't reproduce - could be linked to transient extraction failures)

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/AddToCollectionHandler.java (version 76339fc8a129fd11d2a56a9c6040099663164d7a)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RemoveFromCollectionHandler.java (version 76339fc8a129fd11d2a56a9c6040099663164d7a)
• 

  Jim Myers 14 Apr 2016 5a72e87725879e4df619fe61402a89fbfe49e24a

  allowing collections to be added/removed/have metadata set from batch menu for collections page (already possible if you select and go into a specific collection)

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/presenter/BatchOperationPresenter.java (version 5a72e87725879e4df619fe61402a89fbfe49e24a)
• 

  Jim Myers 02 Apr 2016 e87399d2611aa14cfe3fc7114a7e5d332302b4b1

  removing reference to now-missing menu item for VA also typo fix in css

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DiscoveryPage.java (version e87399d2611aa14cfe3fc7114a7e5d332302b4b1)
  • edu.illinois.ncsa.mmdb.web/war/css/header.css (version e87399d2611aa14cfe3fc7114a7e5d332302b4b1)
• 

  Jim Myers 01 Apr 2016 dbc4874e7d0f55509432234025c5c859e01e64d5

  fix - a call to retrieve ata after publication gave a 500 error rather than the nice fail message due to a bug in handling the missing salt value.

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ResearchObjectsRestService.java (version dbc4874e7d0f55509432234025c5c859e01e64d5)
• 

  Jim Myers 29 Mar 2016 f35e53d59ff387639024fe9c01c87a4e3981f2f7

  fix for long 'About' menu display

  • edu.illinois.ncsa.mmdb.web/war/css/header.css (version f35e53d59ff387639024fe9c01c87a4e3981f2f7)
• 

  Jim Myers 29 Mar 2016 0398f3695153fe8e3059ea72b950aa4b40404019

  orange color changes + adding sead-open back into project list (used for CanopyDB)

  • community/WebContent/login_css/project-space.css (version 0398f3695153fe8e3059ea72b950aa4b40404019)
  • community/WebContent/login_css/um-style.css (version 0398f3695153fe8e3059ea72b950aa4b40404019)
  • community/WebContent/login_scripts/spaces-app.js (version 0398f3695153fe8e3059ea72b950aa4b40404019)
• 

  Jim Myers 29 Mar 2016 e595c6935e528e8e5862422f167717fe2589d1b6

  color updates to darker orange now used in sead-data.net

  • edu.illinois.ncsa.mmdb.web/war/css/header.css (version e595c6935e528e8e5862422f167717fe2589d1b6)
  • edu.illinois.ncsa.mmdb.web/war/css/um-style.css (version e595c6935e528e8e5862422f167717fe2589d1b6)
  • edu.illinois.ncsa.mmdb.web/war/css/um-style.sead.css (version e595c6935e528e8e5862422f167717fe2589d1b6)
  • edu.illinois.ncsa.mmdb.web/war/js/jquery.tagcanvas.init.js (version e595c6935e528e8e5862422f167717fe2589d1b6)
  • edu.illinois.ncsa.mmdb.web/war/mmdb.css (version e595c6935e528e8e5862422f167717fe2589d1b6)
• 

  Jim Myers 28 Mar 2016 8cea31100d2ed1bc0c48b07c7e4ac719dacf41bd

  SEAD Menu update for 1.5 spaces

  • edu.illinois.ncsa.mmdb.web/war/mmdb.html (version 8cea31100d2ed1bc0c48b07c7e4ac719dacf41bd)
• 

  Jim Myers 28 Mar 2016 4ebfbf071bf3f5c1532e3266c83e150721f1d56b

  update to error message when pending requests can't be viewed here.

  • community/WebContent/login_scripts/pending-app.js (version 4ebfbf071bf3f5c1532e3266c83e150721f1d56b)
• 

  Jim Myers 28 Mar 2016 316eb4b46f59bd63c8e03255e7208cdd65ba9cbc

  menu updates to match current sead site.

  • community/WebContent/home.jsp (version 316eb4b46f59bd63c8e03255e7208cdd65ba9cbc)
  • community/WebContent/manage.jsp (version 316eb4b46f59bd63c8e03255e7208cdd65ba9cbc)
  • community/WebContent/pending.html (version 316eb4b46f59bd63c8e03255e7208cdd65ba9cbc)
  • community/WebContent/project-spaces.html (version 316eb4b46f59bd63c8e03255e7208cdd65ba9cbc)
• 

  Jim Myers 28 Mar 2016 11103021e683c617b0902bda05cdde948e0b32a4

  off-by-one typo - salt was not being removed upon publication/pid return

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 11103021e683c617b0902bda05cdde948e0b32a4)
• 

  Jim Myers 25 Feb 2016 174873e719373b110647ffc6739d27f8b91adc22

  null change to trigger build

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RequestPublicationHandler.java (version 174873e719373b110647ffc6739d27f8b91adc22)
• 

  Jim Myers 25 Feb 2016 6ac2fbe56f86271d1bd77d1e41738077dcb46fd8

  making date label in pub request consistent with what's used elsewhere...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RequestPublicationHandler.java (version 6ac2fbe56f86271d1bd77d1e41738077dcb46fd8)
• 

  Jim Myers 19 Feb 2016 9f958fb324069d235a0d5ed291ab778b8b840fce

  Also sending a project name - not stnadrdized yet and no gaurantee that labels are unique, but it shouldn't hurt anything either. If we decide this is useful to agree on, it might be better to switch to sending a "Publishing Project" object with "@id" and "rdfs:label" entries rather than as done here...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RequestPublicationHandler.java (version 9f958fb324069d235a0d5ed291ab778b8b840fce)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 9f958fb324069d235a0d5ed291ab778b8b840fce)
• 

  Jim Myers 19 Feb 2016 6f1f1bf1ff218c20961eaa96c8fb430c327356b1

  adding project ID to request and map in parallel with CATS-436

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RequestPublicationHandler.java (version 6f1f1bf1ff218c20961eaa96c8fb430c327356b1)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 6f1f1bf1ff218c20961eaa96c8fb430c327356b1)
• 

  Jim Myers 18 Feb 2016 5d8efe5e0c893b2c2581abc4135eb8be9d9ecef6

  Never-fail logic for adding people who's IDs aren't in PDT whenever they are used...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/PeopleRestService.java (version 5d8efe5e0c893b2c2581abc4135eb8be9d9ecef6)
• 

  Jim Myers 17 Feb 2016 47e39e13c22d1224a6d28d7d8a28ac4e291b3958

  ORCID/pdt support. Creator and Contact fields now auto-complete against the pdt list of people. Old VIVO links will still display as before, but no new ones can be created (except by manually entering the name:ID strings). Uses a people service proxy to deal with IU firewall...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AddMetadataWidget.java (version 47e39e13c22d1224a6d28d7d8a28ac4e291b3958)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetUserMetadataFieldsHandler.java (version 47e39e13c22d1224a6d28d7d8a28ac4e291b3958)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/SetUserMetadataHandler.java (version 47e39e13c22d1224a6d28d7d8a28ac4e291b3958)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/PeopleRestService.java (version 47e39e13c22d1224a6d28d7d8a28ac4e291b3958)
• 

  Jim Myers 10 Feb 2016 a9e2a8c92a131d68d25d3a2f602a191aea5cde1c

  pretty print byte size while keeping sort for all columns...

  • community/WebContent/login_scripts/filesize.min.js (version a9e2a8c92a131d68d25d3a2f602a191aea5cde1c)
  • community/WebContent/manage.jsp (version a9e2a8c92a131d68d25d3a2f602a191aea5cde1c)
• 

  Jim Myers 08 Feb 2016 88adb614ce3265fd32af3b8824257c5cbbd824b3

  Don't log.warn about 404s from pdt...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/PeopleRestService.java (version 88adb614ce3265fd32af3b8824257c5cbbd824b3)
• 

  Jim Myers 08 Feb 2016 8d40fd1a967241d1d583ec1cb0c04cff3c29e715

  Also remove rdf:type triple, moving some log statements to info()

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/VersionCleanerHandler.java (version 8d40fd1a967241d1d583ec1cb0c04cff3c29e715)
• 

  Jim Myers 08 Feb 2016 52677946f189e1198f4f5f97e7360010fb4bdee5

  adding use info (and documenting the requirement to not delete collections that have been published if this tool is extended to handle collections.

  • medici-ingest/src/main/java/org/sead/acr/tools/medici/TrueDelete.java (version 52677946f189e1198f4f5f97e7360010fb4bdee5)
• 

  Jim Myers 08 Feb 2016 ddbf1bea68940c721695dc27a492c0436fd8c581

  Don't display info about Current version for deleted collections that have published versions.

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version ddbf1bea68940c721695dc27a492c0436fd8c581)
  • edu.illinois.ncsa.mmdb.web/war/js/commons.js (version ddbf1bea68940c721695dc27a492c0436fd8c581)
  • edu.illinois.ncsa.mmdb.web/war/js/discoverypage.js (version ddbf1bea68940c721695dc27a492c0436fd8c581)
• 

  Jim Myers 08 Feb 2016 bea556b16c7ea8d6a8e2a1316394009c57997e27

  Method to clean old test publications - code looks for versions whose pid contains a string from the comma separated list in the property pid.test.shoulders and is more than 2 weeks old. If the version qualifies, it is deleted and, after all deletions, the version numbers of existing and request publications are updated. Default shoulders include the standard DOI shoulder, and seadtest/ideals (part of the IDEALS test handle string). Code is idempotent.

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/dispatch/VersionCleaner.java (version bea556b16c7ea8d6a8e2a1316394009c57997e27)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/admin/ConfigurationWidget.java (version bea556b16c7ea8d6a8e2a1316394009c57997e27)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/common/ConfigurationKey.java (version bea556b16c7ea8d6a8e2a1316394009c57997e27)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/MyActionHandlersConfig.java (version bea556b16c7ea8d6a8e2a1316394009c57997e27)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RequestPublicationHandler.java (version bea556b16c7ea8d6a8e2a1316394009c57997e27)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/VersionCleanerHandler.java (version bea556b16c7ea8d6a8e2a1316394009c57997e27)
• 

  Jim Myers 05 Feb 2016 85453b0575e3b4bb4098fa7b344b9856e6201e32

  Fix for Context Update typo and adding check in Get Relationships to avoid issue for future relationship/metadata predicate collisions. (Get Rel will now ignore non-dataset values and not try to fetch them as dataset beans (corrupting the current session and stopping future bean/thing saves....)

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetRelationshipHandlerNew.java (version 85453b0575e3b4bb4098fa7b344b9856e6201e32)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RemoveUserMetadataHandler.java (version 85453b0575e3b4bb4098fa7b344b9856e6201e32)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/util/ContextUpdater.java (version 85453b0575e3b4bb4098fa7b344b9856e6201e32)
• 

  Jim Myers 05 Feb 2016 69acdcb6aa533bf066f46d42c1b4f7dedf16a7ec

  display ORCID IDs as names...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetUserMetadataFieldsHandler.java (version 69acdcb6aa533bf066f46d42c1b4f7dedf16a7ec)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/PeopleRestService.java (version 69acdcb6aa533bf066f46d42c1b4f7dedf16a7ec)
• 

  Jim Myers 05 Feb 2016 2419188648165d1b5ef33035696d3ebb210312c7

  testing for/stopping bad URI values in metadata

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RemoveUserMetadataHandler.java (version 2419188648165d1b5ef33035696d3ebb210312c7)
• 

  Jim Myers 05 Feb 2016 e41ab252dc68142721590a80e8adccc5087ebbe9

  odm method should not be both relationship and metadata - splitting to have separate terms/predicates.

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/util/ContextUpdater.java (version e41ab252dc68142721590a80e8adccc5087ebbe9)
  • scripts/acr/acr.server.relationships (version e41ab252dc68142721590a80e8adccc5087ebbe9)
• 

  Jim Myers 26 Jan 2016 6e51caa10a670f233731d660936325ca41d63bfc

  resolve ids via c3pr pdt in discovery page

  • edu.illinois.ncsa.mmdb.web/war/js/commons.js (version 6e51caa10a670f233731d660936325ca41d63bfc)
• 

  Jim Myers 26 Jan 2016 0251774858a9cd99bab09f0d3d90d118a4dd74df

  keep param encoding when forwarding

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/PeopleRestService.java (version 0251774858a9cd99bab09f0d3d90d118a4dd74df)
• 

  Jim Myers 26 Jan 2016 050dffaa5213ea8fcedab96197d526512dd426fe

  adding people service to list

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ResteasyApplication.java (version 050dffaa5213ea8fcedab96197d526512dd426fe)
• 

  Jim Myers 26 Jan 2016 bba74df0ae2515c5585625e0eda2f0e3a0543bc5

  cleanup of ro service and add of a test c3pr proxy (for people/* GET)

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/PeopleRestService.java (version bba74df0ae2515c5585625e0eda2f0e3a0543bc5)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ResearchObjectsRestService.java (version bba74df0ae2515c5585625e0eda2f0e3a0543bc5)
• 

  Jim Myers 25 Jan 2016 94fdf2bc9f334c5fcf684e614677c41b9f994bd3

  simple fix to tighten vivo id test to avoid mistaking orcid ids as compound url/name vivo entries.

  • edu.illinois.ncsa.mmdb.web/war/js/commons.js (version 94fdf2bc9f334c5fcf684e614677c41b9f994bd3)
• 

  Jim Myers 22 Jan 2016 5ba07b5e06e98d800e956dab7892e518b38684b5

  rollback - library not supported by gwt

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AddMetadataWidget.java (version 5ba07b5e06e98d800e956dab7892e518b38684b5)
• 

  Jim Myers 22 Jan 2016 b6d3139f09adf6c8ce87df2191a1240f8e1d310b

  Avoid repeated encoding during edits

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/AddMetadataWidget.java (version b6d3139f09adf6c8ce87df2191a1240f8e1d310b)
• 

  Jim Myers 19 Jan 2016 0cb1bb4dffb36acb67ec5dea7ccb7edf389add72

  Don't allow relationships to use reserved/blacklisted labels/predicates.

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/ContextSetupListener.java (version 0cb1bb4dffb36acb67ec5dea7ccb7edf389add72)
• 

  Jim Myers 19 Jan 2016 b1173aed0ff434e48f36a541e22d0a6058f8b65a

  adding blacklisted/reserved terms associated with ORE

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/BlacklistedPredicates.java (version b1173aed0ff434e48f36a541e22d0a6058f8b65a)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version b1173aed0ff434e48f36a541e22d0a6058f8b65a)
• 

  Jim Myers 19 Jan 2016 68c4c935125f46f323816fa566e4f82bf9d9076b

  avoid collision with ORE 'describes'

  • scripts/acr/acr.server.relationships (version 68c4c935125f46f323816fa566e4f82bf9d9076b)
• 

  Jim Myers 13 Jan 2016 13f09c14f030a1921a10e8471132e3a116dc7adb

  Fix collection counting of hierarchies

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 13f09c14f030a1921a10e8471132e3a116dc7adb)
• 

  Jim Myers 12 Jan 2016 f7dbf4b6e637ea0cfeb93492102c9a6d03db1c80

  typo...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version f7dbf4b6e637ea0cfeb93492102c9a6d03db1c80)
• 

  Jim Myers 12 Jan 2016 214bf79f95694bf71960253fe4843c072d9e5343

  Two more places where unifyEcludeDelete was not used correctly / deleted items were still included

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/GetCollectionHandler.java (version 214bf79f95694bf71960253fe4843c072d9e5343)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 214bf79f95694bf71960253fe4843c072d9e5343)
• 

  Jim Myers 11 Jan 2016 1e7f8ff1aa20be572c162926bdd6cd0c7b08d078

  missing !

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 1e7f8ff1aa20be572c162926bdd6cd0c7b08d078)
• 

  Jim Myers 11 Jan 2016 e85a304e29c8c6828343b26f9f09fb66e0273221

  allow anon/others with view published to see metadata of published items on published data page

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RequestPublicationHandler.java (version e85a304e29c8c6828343b26f9f09fb66e0273221)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version e85a304e29c8c6828343b26f9f09fb66e0273221)
• 

  Jim Myers 11 Jan 2016 c64f6bf44289cb2bc7ed8c5e33999400c9588800

  Handling case of null returned when sys info is not yet available (first time after startup).

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/SysInfoRestService.java (version c64f6bf44289cb2bc7ed8c5e33999400c9588800)
• 

  Jim Myers 11 Jan 2016 f86d368fcda0188417607d72e0eab5243eb6d298

  Seeing repeat requests on sen that fail with an operatorerror - adding debugging and logic to avoid having multiple sys info requests running in parallel...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/SystemInfoHandler.java (version f86d368fcda0188417607d72e0eab5243eb6d298)
• 

  Jim Myers 08 Jan 2016 1c10423a725bf29b0faa3a28c682fbcdbd6578f4

  Bug - was using the raw result and not the one with deleted items excluded...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 1c10423a725bf29b0faa3a28c682fbcdbd6578f4)
• 

  Jim Myers 08 Dec 2015 34f56c754e299c8877a1a1af25e941032cdea56a

  Send @id for aggregated resources - duplicates Identifier for now. (@id is used as the node ID when converting to rdf, so it is the preferred place to put an id that is a URI/valid RDF subject - we can duplicate that value as Identifier for backward compatibility and/or if repositories want an explicit Dublin Core related field (dc/elements/1.1/Identifier is used for our internal ids).

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 34f56c754e299c8877a1a1af25e941032cdea56a)
• 

  Jim Myers 08 Dec 2015 3d34ca08b09afc903f34437ae58b8bab54a3d02f

  assuring that  any Preferences @context is included, adding Affiliations @context entry by default (since it is in a rule).

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/dispatch/RequestPublicationHandler.java (version 3d34ca08b09afc903f34437ae58b8bab54a3d02f)
• 

  Jim Myers 08 Dec 2015 69b3680c641e91d251acddfed0901b4d713890a1

  Handling tag Id to string for all levels (aggegregation, subcollections, and datasets) in oremap creation

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 69b3680c641e91d251acddfed0901b4d713890a1)
• 

  Jim Myers 04 Dec 2015 6eacc19359e42d4ebbdeda3f046713b92164fd7c

  Using consistent label for dcterms:isVersionOf

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 6eacc19359e42d4ebbdeda3f046713b92164fd7c)
• 

  Jim Myers 23 Nov 2015 2bcb4458776e07f7e8c53a721585284609b4d22e

  Merge branch '1.5.2-fixes' of https://jimmyers@opensource.ncsa.illinois.edu/bitbucket/scm/mmdb/medici-gwt-web.git into 1.5.2-fixes
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 20 Nov 2015 66d0920e92291b3010234f41af7433c84e680063

  Merge branch 'spaces-design-change' of https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web into spaces-design-change
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 20 Nov 2015 5f76ed3f7ecffd4e2fabbb93c1720dee65ccc3fb

  allow html tags to be displayed in description

  • community/WebContent/login_scripts/spaces-app.js (version 5f76ed3f7ecffd4e2fabbb93c1720dee65ccc3fb)
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 20 Nov 2015 8da5d20afae10668ebf65fee6e946ba789b64e8d

  strip html tags from description output

  • community/WebContent/login_scripts/spaces-app.js (version 8da5d20afae10668ebf65fee6e946ba789b64e8d)
• 

  Jim Myers 20 Nov 2015 3f7e55babd2d0505d2b04b32c88d70ab796ad899

  update has fixes for some pool leaks and is compatible with 1.5.4

  • edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/commons-pool-1.5.4.jar (version 3f7e55babd2d0505d2b04b32c88d70ab796ad899)
  • edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/commons-pool-1.5.7.jar (version 3f7e55babd2d0505d2b04b32c88d70ab796ad899)
• 

  Jim Myers 20 Nov 2015 d0c3f9a9d561e4724eefe0a3d045b94bcd07e5bb

  clean-up unused servlet

  • community/WebContent/WEB-INF/web.xml (version d0c3f9a9d561e4724eefe0a3d045b94bcd07e5bb)
  • community/src/org/sead/acr/community/Projectspaces.java (version d0c3f9a9d561e4724eefe0a3d045b94bcd07e5bb)
• 

  Jim Myers 20 Nov 2015 59e9af713518ed502fd63f055ea3cd7ef650b768

  quick use of proxy to allow authenticated access to c3pr services (inc. mgmgt console) from outside trusted ips. For now, from the c3pr.* files, add login.jsp to Web Resources, and replace the web.xml and log4j files. Some URls hardcoded to sead-test in login.jsp. Going forward, should either integrate this with projects (perhaps protecting the /exp - manage view) or pull into a separate build.

  • community/WebContent/WEB-INF/lib/ACRCommon.jar (version 59e9af713518ed502fd63f055ea3cd7ef650b768)
  • community/WebContent/WEB-INF/lib/httpclient-4.3.5.jar (version 59e9af713518ed502fd63f055ea3cd7ef650b768)
  • community/WebContent/WEB-INF/lib/httpcore-4.3.2.jar (version 59e9af713518ed502fd63f055ea3cd7ef650b768)
  • community/c3pr.log4j.properties (version 59e9af713518ed502fd63f055ea3cd7ef650b768)
  • community/c3pr.login.jsp (version 59e9af713518ed502fd63f055ea3cd7ef650b768)
  • community/c3pr.web.xml (version 59e9af713518ed502fd63f055ea3cd7ef650b768)
  • community/src/org/sead/acr/community/Login.java (version 59e9af713518ed502fd63f055ea3cd7ef650b768)
• 

  Jim Myers 20 Nov 2015 8e4dc335246c85292068ea61578d0c4a77e07070

  typo

  • community/src/org/sead/acr/community/VIVOProxyServlet.java (version 8e4dc335246c85292068ea61578d0c4a77e07070)
• 

  Jim Myers 20 Nov 2015 5541fde55beff2d40518f81662f8cb620b9bffaa

  bugfix for when using Authfilter and GeoProxy together

  • ACRCommon/src/org/mitre/dsmiley/httpproxy/GeoProxyServlet.java (version 5541fde55beff2d40518f81662f8cb620b9bffaa)
• 

  Jim Myers 20 Nov 2015 9b7411f14f5019c385a7305c6fb0b14dbf4a9e8b

  http --> https - code doesn't handle redirects...

  • scripts/acr/extractor.properties (version 9b7411f14f5019c385a7305c6fb0b14dbf4a9e8b)
• 

  Jim Myers 20 Nov 2015 ee55ad1b62f43c1ad05bb33828888adfa9501f8f

  more servers using bigdata

  • scripts/acr/acr.server.bigdata.sbdc (version ee55ad1b62f43c1ad05bb33828888adfa9501f8f)
  • scripts/acr/acr.server.bigdata.sen (version ee55ad1b62f43c1ad05bb33828888adfa9501f8f)
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 19 Nov 2015 bb91e1499ccedd3f9231f30a67528159ce7be97c

  strip html tags from description output

  • community/WebContent/login_scripts/spaces-app.js (version bb91e1499ccedd3f9231f30a67528159ce7be97c)
• 

  Jim Myers 18 Nov 2015 dbea9240c676811ddac5fa4828674ce8534738b7

  Fixed bug that caused a 500 when content was not visible to a user and added SHA1 Hash to the biblio output of the services for publication purposes.

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version dbea9240c676811ddac5fa4828674ce8534738b7)
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 18 Nov 2015 e4101b5e46ab481a710a758862e1c1e45c520b5e

  add title attribute to stats on slow loading spaces

  • community/WebContent/login_scripts/spaces-app.js (version e4101b5e46ab481a710a758862e1c1e45c520b5e)
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 18 Nov 2015 4bed79955880b5efb26d7f907feb675221487de2

  revised design of project spaces. make filters and sorts more compact. show SEAD demo at top of page. hide SEAD open and SEAD demo in main listing

  • community/WebContent/login_scripts/spaces-app.js (version 4bed79955880b5efb26d7f907feb675221487de2)
  • community/WebContent/project-spaces.html (version 4bed79955880b5efb26d7f907feb675221487de2)
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 18 Nov 2015 abc74d9ce1aa9d718af1444805458b0d7368953a

  code cleanup

  • community/WebContent/login_scripts/spaces-app.js (version abc74d9ce1aa9d718af1444805458b0d7368953a)
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 18 Nov 2015 38f23a0e24bcb16e3643e5dcf9e2c61ae6aa0f4d

  improve loading performance by allow slow-loading spaces to load individually after initial page load

  • community/WebContent/login_css/project-space.css (version 38f23a0e24bcb16e3643e5dcf9e2c61ae6aa0f4d)
  • community/WebContent/login_scripts/spaces-app.js (version 38f23a0e24bcb16e3643e5dcf9e2c61ae6aa0f4d)
  • community/WebContent/project-spaces.html (version 38f23a0e24bcb16e3643e5dcf9e2c61ae6aa0f4d)
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 18 Nov 2015 0e2ed1bb9d33b61e0db45d29165e0a361d3556b1

  revise design of sead demo space box

  • community/WebContent/login_scripts/spaces-app.js (version 0e2ed1bb9d33b61e0db45d29165e0a361d3556b1)
  • community/WebContent/project-spaces.html (version 0e2ed1bb9d33b61e0db45d29165e0a361d3556b1)
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 18 Nov 2015 4d13a215a76b303e30fa512922531740bfe790ec

  fix html syntax error

  • community/WebContent/login_scripts/spaces-app.js (version 4d13a215a76b303e30fa512922531740bfe790ec)
• 

  Michael Iannaccone <mikeiannaccone@yahoo.com> 18 Nov 2015 46fb5cc541e38363d769e4ae7936994391d16949

  revise styling of SEAD Demo space box

  • community/WebContent/login_scripts/spaces-app.js (version 46fb5cc541e38363d769e4ae7936994391d16949)
  • community/WebContent/project-spaces.html (version 46fb5cc541e38363d769e4ae7936994391d16949)
• 

  Jim Myers 11 Nov 2015 02b54205767aafd7a804ea76272fefdd44efd631

  URLEncode dataset IDs in oremap to handle old nced ids that have '/' chars

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 02b54205767aafd7a804ea76272fefdd44efd631)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ResearchObjectsRestService.java (version 02b54205767aafd7a804ea76272fefdd44efd631)
• 

  Jim Myers 11 Nov 2015 a12080b0b53a03e8c682a912ad9e692b453056d4

  adding 'Has Part' to dctermsLhasPart mapping back into combined context/inversecontext (dcterms:hasPart is removed from the combined context for use with the /metadata endpoints, but needed for the OREmaps) - fixes a null key bug when generating oremaps.

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version a12080b0b53a03e8c682a912ad9e692b453056d4)
• 

  Jim Myers 10 Nov 2015 b8a11723f64e8c0fac6e010daf5f5e261fdf9d17

  don't auto create previews when bigdata flag is set (we have users uploading hundreds/thousands of files/100's of GB via the GUI and previews such as image pyramids are potentially big w.r.t. the data).

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/UploadBlob.java (version b8a11723f64e8c0fac6e010daf5f5e261fdf9d17)
• 

  Jim Myers 10 Nov 2015 963da7fcbbe2e8730fb49367d9799e1e0a2ecd57

  Updating text for rerum extractor and making it possible for authors to do it (for larger spaces, we're not generating/removing big previews (like image pyramids) - this lets authors create them  as they browse. May eventually want to auto-trigger for viewers/anonymous if/when they don't exist, but will leave this for the indefinite future...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/client/ui/DatasetWidget.java (version 963da7fcbbe2e8730fb49367d9799e1e0a2ecd57)
  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/common/DefaultRole.java (version 963da7fcbbe2e8730fb49367d9799e1e0a2ecd57)
• 

  Jim Myers 10 Nov 2015 03b4bf8530bf227d92b6b0b797a82a6d0d1a7b7a

  added removal of any geoserver entry for geo previews to the actions, which requires adding an http library. Also tweaked RemovePreviews to allow specifying specific datasets on the command line

  • medici-ingest/.classpath (version 03b4bf8530bf227d92b6b0b797a82a6d0d1a7b7a)
  • medici-ingest/pom.xml (version 03b4bf8530bf227d92b6b0b797a82a6d0d1a7b7a)
  • medici-ingest/src/main/java/org/sead/acr/tools/medici/NodeProcessorBase.java (version 03b4bf8530bf227d92b6b0b797a82a6d0d1a7b7a)
  • medici-ingest/src/main/java/org/sead/acr/tools/medici/RemovePreviews.java (version 03b4bf8530bf227d92b6b0b797a82a6d0d1a7b7a)
• 

  Jim Myers 10 Nov 2015 47ff6f80878c0aa93657eeb6f8f1b7c2f1815a38

  New tools to: Fully remove deleted items Remove previews Remove orphaned previews, notes, geopoints, etc. (things that are usually linked to collections or datasets that don't have a parent) All based on a common NodeProcessor class that traverses down a set of links from the parent to find all metadata/blobs that are unique to the parent. Also looks up to find backlinks that are unique (i.e. statements about relationships, top level link)

  • medici-ingest/src/main/java/org/sead/acr/tools/medici/NodeProcessorBase.java (version 47ff6f80878c0aa93657eeb6f8f1b7c2f1815a38)
  • medici-ingest/src/main/java/org/sead/acr/tools/medici/RemoveOrphans.java (version 47ff6f80878c0aa93657eeb6f8f1b7c2f1815a38)
  • medici-ingest/src/main/java/org/sead/acr/tools/medici/RemovePreviews.java (version 47ff6f80878c0aa93657eeb6f8f1b7c2f1815a38)
  • medici-ingest/src/main/java/org/sead/acr/tools/medici/TrueDelete.java (version 47ff6f80878c0aa93657eeb6f8f1b7c2f1815a38)
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  Jim Myers 05 Nov 2015 6f05741582afee60134d34be6eec18bca73c29d2

  reverting to LinkedHasMaps which appear to be faster, Memoizing inverseCombinedMap used by ORe map generation

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 6f05741582afee60134d34be6eec18bca73c29d2)
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  Jim Myers 04 Nov 2015 e14b935ae625d137c20656562d22269ce3cc777f

  debugging: switching to hashtable to catch a null key...

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version e14b935ae625d137c20656562d22269ce3cc777f)
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  Jim Myers 04 Nov 2015 2b44791faf2c49ab126f1171aba85516d6de67da

  optimization - only calculate inverse map once for large oremaps also moved several debug statements to trace to improve log readability

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version 2b44791faf2c49ab126f1171aba85516d6de67da)
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  Jim Myers 04 Nov 2015 de715ecc326bf08ea3d0499500459c9434a1bf35

  remove unused interrupt check

  • edu.illinois.ncsa.mmdb.web/src/edu/illinois/ncsa/mmdb/web/server/resteasy/ItemServicesImpl.java (version de715ecc326bf08ea3d0499500459c9434a1bf35)