Build: #80 was successful

Job: default was successful

Stages & jobs

  1. Default Stage

Build log

The build generated 252 lines of output. Download or view full build log.

21-Jul-2015 16:35:03 Build MMDB - Medici 1 GWT - sead - default #80 (MMDB-MEDICI70-JOB1-80) started building on agent buildserver-2.ncsa.illinois.edu
21-Jul-2015 16:35:03 Remote Agent
21-Jul-2015 16:35:04 Build working directory is /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1
21-Jul-2015 16:35:04 Executing build MMDB - Medici 1 GWT - sead - default #80 (MMDB-MEDICI70-JOB1-80)
21-Jul-2015 16:35:04 Starting task 'Source Code Checkout' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
21-Jul-2015 16:35:04 Build always requires a clean checkout
21-Jul-2015 16:35:04 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt'
21-Jul-2015 16:35:04 Build always requires a clean checkout
21-Jul-2015 16:35:04 Cleaning build directory '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet'
21-Jul-2015 16:35:04 Updating source code to revision: 0b0c83b554155ac7311669db83245e3132e419e6
21-Jul-2015 16:35:04 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/.git'.
21-Jul-2015 16:35:04 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/.git/
21-Jul-2015 16:35:05 Fetching 'refs/heads/sead' from 'https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git'. Will try to do a shallow fetch.
21-Jul-2015 16:35:16 From https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web
21-Jul-2015 16:35:16 * [new branch]      sead       -> sead
21-Jul-2015 16:35:16 Checking out revision 0b0c83b554155ac7311669db83245e3132e419e6.
21-Jul-2015 16:35:18 Switched to branch 'sead'
21-Jul-2015 16:35:18 Updated source code to revision: 0b0c83b554155ac7311669db83245e3132e419e6
21-Jul-2015 16:35:18 Updating source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
21-Jul-2015 16:35:18 Creating local git repository in '/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/.git'.
21-Jul-2015 16:35:18 Initialized empty Git repository in /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/.git/
21-Jul-2015 16:35:19 Fetching 'refs/heads/master' from 'https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git'. Will try to do a shallow fetch.
21-Jul-2015 16:35:45 From https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet
21-Jul-2015 16:35:45 * [new branch]      master     -> master
21-Jul-2015 16:35:45 Checking out revision 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e.
21-Jul-2015 16:35:46 Checking out files:  30% (882/2937)   
21-Jul-2015 16:35:46 Checking out files:  31% (911/2937)   
21-Jul-2015 16:35:46 Checking out files:  32% (940/2937)   
21-Jul-2015 16:35:46 Checking out files:  33% (970/2937)   
21-Jul-2015 16:35:47 Checking out files:  34% (999/2937)   
21-Jul-2015 16:35:47 Checking out files:  35% (1028/2937)   
21-Jul-2015 16:35:47 Checking out files:  35% (1032/2937)   
21-Jul-2015 16:35:47 Checking out files:  36% (1058/2937)   
21-Jul-2015 16:35:47 Checking out files:  37% (1087/2937)   
21-Jul-2015 16:35:47 Checking out files:  38% (1117/2937)   
21-Jul-2015 16:35:47 Checking out files:  39% (1146/2937)   
21-Jul-2015 16:35:48 Checking out files:  40% (1175/2937)   
21-Jul-2015 16:35:48 Checking out files:  41% (1205/2937)   
21-Jul-2015 16:35:48 Checking out files:  42% (1234/2937)   
21-Jul-2015 16:35:48 Checking out files:  43% (1263/2937)   
21-Jul-2015 16:35:48 Checking out files:  44% (1293/2937)   
21-Jul-2015 16:35:48 Checking out files:  45% (1322/2937)   
21-Jul-2015 16:35:48 Checking out files:  46% (1352/2937)   
21-Jul-2015 16:35:48 Checking out files:  47% (1381/2937)   
21-Jul-2015 16:35:48 Checking out files:  48% (1410/2937)   
21-Jul-2015 16:35:48 Checking out files:  48% (1418/2937)   
21-Jul-2015 16:35:48 Checking out files:  49% (1440/2937)   
21-Jul-2015 16:35:48 Checking out files:  50% (1469/2937)   
21-Jul-2015 16:35:48 Checking out files:  51% (1498/2937)   
21-Jul-2015 16:35:49 Checking out files:  52% (1528/2937)   
21-Jul-2015 16:35:49 Checking out files:  52% (1531/2937)   
21-Jul-2015 16:35:49 Checking out files:  53% (1557/2937)   
21-Jul-2015 16:35:49 Checking out files:  54% (1586/2937)   
21-Jul-2015 16:35:49 Checking out files:  55% (1616/2937)   
21-Jul-2015 16:35:50 Checking out files:  56% (1645/2937)   
21-Jul-2015 16:35:50 Checking out files:  56% (1656/2937)   
21-Jul-2015 16:35:50 Checking out files:  57% (1675/2937)   
21-Jul-2015 16:35:50 Checking out files:  58% (1704/2937)   
21-Jul-2015 16:35:50 Checking out files:  59% (1733/2937)   
21-Jul-2015 16:35:50 Checking out files:  60% (1763/2937)   
21-Jul-2015 16:35:51 Checking out files:  61% (1792/2937)   
21-Jul-2015 16:35:51 Checking out files:  61% (1817/2937)   
21-Jul-2015 16:35:51 Checking out files:  62% (1821/2937)   
21-Jul-2015 16:35:51 Checking out files:  63% (1851/2937)   
21-Jul-2015 16:35:51 Checking out files:  64% (1880/2937)   
21-Jul-2015 16:35:51 Checking out files:  65% (1910/2937)   
21-Jul-2015 16:35:52 Checking out files:  66% (1939/2937)   
21-Jul-2015 16:35:52 Checking out files:  67% (1968/2937)   
21-Jul-2015 16:35:52 Checking out files:  67% (1997/2937)   
21-Jul-2015 16:35:52 Checking out files:  68% (1998/2937)   
21-Jul-2015 16:35:52 Checking out files:  69% (2027/2937)   
21-Jul-2015 16:35:52 Checking out files:  70% (2056/2937)   
21-Jul-2015 16:35:52 Checking out files:  71% (2086/2937)   
21-Jul-2015 16:35:52 Checking out files:  72% (2115/2937)   
21-Jul-2015 16:35:52 Checking out files:  73% (2145/2937)   
21-Jul-2015 16:35:52 Checking out files:  74% (2174/2937)   
21-Jul-2015 16:35:52 Checking out files:  75% (2203/2937)   
21-Jul-2015 16:35:52 Checking out files:  76% (2233/2937)   
21-Jul-2015 16:35:52 Checking out files:  77% (2262/2937)   
21-Jul-2015 16:35:52 Checking out files:  78% (2291/2937)   
21-Jul-2015 16:35:52 Checking out files:  79% (2321/2937)   
21-Jul-2015 16:35:52 Checking out files:  80% (2350/2937)   
21-Jul-2015 16:35:52 Checking out files:  81% (2379/2937)   
21-Jul-2015 16:35:52 Checking out files:  82% (2409/2937)   
21-Jul-2015 16:35:53 Checking out files:  82% (2424/2937)   
21-Jul-2015 16:35:53 Checking out files:  83% (2438/2937)   
21-Jul-2015 16:35:53 Checking out files:  84% (2468/2937)   
21-Jul-2015 16:35:53 Checking out files:  85% (2497/2937)   
21-Jul-2015 16:35:54 Checking out files:  86% (2526/2937)   
21-Jul-2015 16:35:54 Checking out files:  87% (2556/2937)   
21-Jul-2015 16:35:54 Checking out files:  87% (2559/2937)   
21-Jul-2015 16:35:54 Checking out files:  88% (2585/2937)   
21-Jul-2015 16:35:54 Checking out files:  89% (2614/2937)   
21-Jul-2015 16:35:55 Checking out files:  90% (2644/2937)   
21-Jul-2015 16:35:55 Checking out files:  91% (2673/2937)   
21-Jul-2015 16:35:55 Checking out files:  92% (2703/2937)   
21-Jul-2015 16:35:55 Checking out files:  93% (2732/2937)   
21-Jul-2015 16:35:55 Checking out files:  94% (2761/2937)   
21-Jul-2015 16:35:55 Checking out files:  95% (2791/2937)   
21-Jul-2015 16:35:55 Checking out files:  96% (2820/2937)   
21-Jul-2015 16:35:55 Checking out files:  96% (2843/2937)   
21-Jul-2015 16:35:55 Checking out files:  97% (2849/2937)   
21-Jul-2015 16:35:56 Checking out files:  98% (2879/2937)   
21-Jul-2015 16:35:56 Checking out files:  98% (2904/2937)   
21-Jul-2015 16:35:56 Checking out files:  99% (2908/2937)   
21-Jul-2015 16:35:56 Checking out files: 100% (2937/2937)   
21-Jul-2015 16:35:56 Checking out files: 100% (2937/2937), done.
21-Jul-2015 16:35:56 Already on 'master'
21-Jul-2015 16:35:56 Updated source code to revision: 0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
21-Jul-2015 16:35:56 Finished task 'Source Code Checkout' with result: Success
21-Jul-2015 16:35:56 Running pre-build action: VCS Version Collector
21-Jul-2015 16:35:58
Substituting variable: ${bamboo.repository.branch.name} with sead
21-Jul-2015 16:35:58
Substituting variable: ${bamboo.buildNumber} with 80
21-Jul-2015 16:35:58 Starting task 'Web App' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant'
21-Jul-2015 16:35:58
Beginning to execute external process for build 'MMDB - Medici 1 GWT - sead - default #80 (MMDB-MEDICI70-JOB1-80)'
... running command line:
/home/bamboo/apache-ant-1.9.4/bin/ant -Djava.io.tmpdir=/tmp/MMDB-MEDICI70-JOB1 bamboo -Dbamboo.version="sead#80"
... in: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web
... using extra environment variables:
bamboo_capability_system_builder_command_sphinx=/usr/bin/sphinx-build
bamboo_capability_system_jdk_JDK_1_8=/home/bamboo/jdk1.8.0_05
bamboo_capability_system_jdk_JDK_1_6=/home/bamboo/jdk1.6.0_41
bamboo_capability_system_builder_command_npm=/home/bamboo/node-v0.10.28/bin/npm
bamboo_capability_system_jdk_JDK_1_7=/home/bamboo/jdk1.7.0_60
JAVA_HOME=/home/bamboo/jdk1.7.0_60
bamboo_repository_18841602_previous_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_planRepository_type=git
bamboo_shortPlanName=sead
bamboo_capability_system_software_mongo=/usr/bin/mongo
bamboo_planKey=MMDB-MEDICI70
bamboo_repository_71958567_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_repository_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_repository_18841602_git_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_planRepository_1_branchName=sead
bamboo_capability_system_builder_command_buckminster_4_2=/home/bamboo/buckminster-4.2/buckminster
bamboo_repository_71958567_revision_number=0b0c83b554155ac7311669db83245e3132e419e6
bamboo_shortPlanKey=MEDICI70
bamboo_shortJobKey=JOB1
bamboo_build_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1
bamboo_capability_system_builder_command_sbt_0_13=/home/bamboo/sbt-0.13.2/bin/sbt
bamboo_planRepository_1_branch=sead
bamboo_repository_revision_number=0b0c83b554155ac7311669db83245e3132e419e6
bamboo_repository_18841602_name=cet
bamboo_capability_system_builder_mvn3_Maven_3=/home/bamboo/apache-maven-3.2.1
bamboo_planRepository_2_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/cbi/cet.git
bamboo_capability_system_builder_command_phantomjs=/home/bamboo/phantomjs-1.9.8/bin/phantomjs
bamboo_planName=MMDB - Medici 1 GWT - sead
bamboo_buildResultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI70-JOB1-80
bamboo_capability_system_jdk_JDK_1_7_0_60=/home/bamboo/jdk1.7.0_60
bamboo_planRepository_revision=0b0c83b554155ac7311669db83245e3132e419e6
bamboo_buildResultKey=MMDB-MEDICI70-JOB1-80
bamboo_repository_git_username=
bamboo_repository_previous_revision_number=50e2ba066679e117fca67359e477310f7630fd62
bamboo_capability_system_git_executable=/usr/bin/git
bamboo_buildKey=MMDB-MEDICI70-JOB1
bamboo_working_directory=/home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1
bamboo_repository_18841602_revision_number=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_username=
bamboo_planRepository_2_previousRevision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_capability_system_builder_node_Node_js=/home/bamboo/node-v0.10.28/bin/node
bamboo_repository_71958567_previous_revision_number=50e2ba066679e117fca67359e477310f7630fd62
bamboo_agentWorkingDirectory=/home/bamboo/bamboo-agent-home/xml-data/build-dir
bamboo_buildPlanName=MMDB - Medici 1 GWT - sead - default
bamboo_repository_71958567_git_branch=sead
bamboo_repository_name=cet
bamboo_planRepository_2_revision=0b0c4e05e8f4518f20b5ff7ffd272304deeab48e
bamboo_repository_18841602_git_branch=master
bamboo_resultsUrl=https://opensource.ncsa.illinois.edu/bamboo/browse/MMDB-MEDICI70-JOB1-80
bamboo_repository_git_branch=sead
bamboo_planRepository_1_revision=0b0c83b554155ac7311669db83245e3132e419e6
bamboo_planRepository_2_branch=master
bamboo_planRepository_1_previousRevision=50e2ba066679e117fca67359e477310f7630fd62
bamboo_planRepository_1_type=git
bamboo_repository_71958567_branch_name=sead
bamboo_repository_18841602_branch_name=master
bamboo_repository_71958567_name=medici-gwt-web
bamboo_planRepository_1_name=medici-gwt-web
bamboo_capability_system_builder_command_grunt=/home/bamboo/node-v0.10.28/bin/grunt
bamboo_planRepository_branch=sead
bamboo_planRepository_2_branchName=master
bamboo_planRepository_username=
bamboo_planRepository_branchName=sead
bamboo_capability_system_jdk_JDK=/home/bamboo/jdk1.7.0_60
bamboo_capability_system_os=linux
bamboo_capability_system_builder_mvn2_Maven_2=/home/bamboo/apache-maven-2.2.1
bamboo_repository_71958567_git_username=
bamboo_shortJobName=default
bamboo_repository_branch_name=sead
bamboo_agentId=57573377
bamboo_planRepository_previousRevision=50e2ba066679e117fca67359e477310f7630fd62
bamboo_planRepository_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_1_repositoryUrl=https://opensource.ncsa.illinois.edu/stash/scm/mmdb/medici-gwt-web.git
bamboo_planRepository_2_type=git
ANT_HOME=/home/bamboo/apache-ant-1.9.4
bamboo_planRepository_2_name=cet
bamboo_planRepository_1_username=
bamboo_buildNumber=80
bamboo_planRepository_name=medici-gwt-web
bamboo_planRepository_2_username=
bamboo_capability_system_builder_command_casperjs=/home/bamboo/node-v0.10.28/bin/casperjs
bamboo_capability_system_hostname=buildserver-2
bamboo_capability_system_software_rabbitmq=/usr/sbin/rabbitmqctl
bamboo_capability_system_builder_ant_Ant=/home/bamboo/apache-ant-1.9.4
bamboo_buildTimeStamp=2015-07-21T16:35:03.024-05:00
PATH=/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/jdk1.7.0_60/bin:/home/bamboo/node-v0.10.28/bin:/usr/bin:/bin
21-Jul-2015 16:35:58 Buildfile: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml
21-Jul-2015 16:35:59
21-Jul-2015 16:35:59 cetbean:
21-Jul-2015 16:35:59     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
21-Jul-2015 16:35:59     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:85: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
21-Jul-2015 16:35:59     [javac] Compiling 65 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
21-Jul-2015 16:36:00     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
21-Jul-2015 16:36:02     [javac] 1 warning
21-Jul-2015 16:36:02       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean.jar
21-Jul-2015 16:36:03    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
21-Jul-2015 16:36:03     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
21-Jul-2015 16:36:03     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:100: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
21-Jul-2015 16:36:03     [javac] Compiling 97 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
21-Jul-2015 16:36:03     [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
21-Jul-2015 16:36:04     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:48: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
21-Jul-2015 16:36:04     [javac] import sun.misc.BASE64Encoder;
21-Jul-2015 16:36:04     [javac]                ^
21-Jul-2015 16:36:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/TagEventBeanUtil.java:72: warning: [deprecation] encode(String) in URLEncoder has been deprecated
21-Jul-2015 16:36:05     [javac]         return Resource.uriRef("tag:cet.ncsa.uiuc.edu,2008:/tag#" + URLEncoder.encode(tag)); //$NON-NLS-1$
21-Jul-2015 16:36:05     [javac]                                                                               ^
21-Jul-2015 16:36:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:73: warning: [deprecation] clone(T,PersonBean) in TupeloBeanUtil has been deprecated
21-Jul-2015 16:36:05     [javac]     public VisualizationBean clone(VisualizationBean bean, PersonBean creator)
21-Jul-2015 16:36:05     [javac]                              ^
21-Jul-2015 16:36:05     [javac]   where T is a type-variable:
21-Jul-2015 16:36:05     [javac]     T extends CETBean declared in class TupeloBeanUtil
21-Jul-2015 16:36:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/VisualizationBeanUtil.java:83: warning: [deprecation] clone(ConfigurationBean,PersonBean) in ConfigurationBeanUtil has been deprecated
21-Jul-2015 16:36:05     [javac]             ConfigurationBean configuration = cbu.clone(bean.getConfiguration(), creator);
21-Jul-2015 16:36:05     [javac]                                                  ^
21-Jul-2015 16:36:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
21-Jul-2015 16:36:05     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
21-Jul-2015 16:36:05     [javac]                                           ^
21-Jul-2015 16:36:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:442: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
21-Jul-2015 16:36:05     [javac]             if (!t.getObject().equals(MMDB.ADMIN_ROLE) && !t.getObject().equals(MMDB.REGULAR_MEMBER_ROLE)) {
21-Jul-2015 16:36:05     [javac]                                                                                     ^
21-Jul-2015 16:36:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:452: warning: [deprecation] ADMIN_ROLE in MMDB has been deprecated
21-Jul-2015 16:36:05     [javac]         createRole(MMDB.ADMIN_ROLE, "Administrator");
21-Jul-2015 16:36:05     [javac]                        ^
21-Jul-2015 16:36:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/RBAC.java:453: warning: [deprecation] REGULAR_MEMBER_ROLE in MMDB has been deprecated
21-Jul-2015 16:36:05     [javac]         createRole(MMDB.REGULAR_MEMBER_ROLE, "Member");
21-Jul-2015 16:36:05     [javac]                        ^
21-Jul-2015 16:36:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
21-Jul-2015 16:36:05     [javac]         BASE64Encoder encoder = new BASE64Encoder();
21-Jul-2015 16:36:05     [javac]         ^
21-Jul-2015 16:36:05     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/rbac/SHAPasswordDigest.java:78: warning: BASE64Encoder is internal proprietary API and may be removed in a future release
21-Jul-2015 16:36:05     [javac]         BASE64Encoder encoder = new BASE64Encoder();
21-Jul-2015 16:36:05     [javac]                                     ^
21-Jul-2015 16:36:06     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:28: warning: [deprecation] Rdf in Vocabulary has been deprecated
21-Jul-2015 16:36:06     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
21-Jul-2015 16:36:06     [javac]                                                     ^
21-Jul-2015 16:36:06     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:40: warning: [deprecation] Rdf in Vocabulary has been deprecated
21-Jul-2015 16:36:06     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.PARAMETER)); //$NON-NLS-1$
21-Jul-2015 16:36:06     [javac]                                                     ^
21-Jul-2015 16:36:06     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:58: warning: [deprecation] Rdf in Vocabulary has been deprecated
21-Jul-2015 16:36:06     [javac]         uf.addPattern(new Pattern("input", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
21-Jul-2015 16:36:06     [javac]                                                      ^
21-Jul-2015 16:36:06     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowStepDAO.java:82: warning: [deprecation] Rdf in Vocabulary has been deprecated
21-Jul-2015 16:36:06     [javac]         uf.addPattern(new Pattern("output", Vocabulary.Rdf.TYPE, Cyberintegrator.DATASET)); //$NON-NLS-1$
21-Jul-2015 16:36:06     [javac]                                                       ^
21-Jul-2015 16:36:06     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:26: warning: [deprecation] Rdf in Vocabulary has been deprecated
21-Jul-2015 16:36:06     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
21-Jul-2015 16:36:06     [javac]                                                     ^
21-Jul-2015 16:36:06     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/cet/edu.uiuc.ncsa.cet.bean.tupelo/src/main/java/edu/uiuc/ncsa/cet/bean/tupelo/workflow/dao/WorkflowToolDataDAO.java:41: warning: [deprecation] Rdf in Vocabulary has been deprecated
21-Jul-2015 16:36:06     [javac]         uf.addPattern(new Pattern("data", Vocabulary.Rdf.TYPE, Cyberintegrator.TOOL_DATA)); //$NON-NLS-1$
21-Jul-2015 16:36:06     [javac]                                                     ^
21-Jul-2015 16:36:06     [javac] 17 warnings
21-Jul-2015 16:36:06       [jar] Building jar: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/lib/cet-bean-tupelo.jar
21-Jul-2015 16:36:06    [delete] Deleting directory /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/beanclass
21-Jul-2015 16:36:06
21-Jul-2015 16:36:06 updateversion:
21-Jul-2015 16:36:06
21-Jul-2015 16:36:06 clean:
21-Jul-2015 16:36:06
21-Jul-2015 16:36:06 compile:
21-Jul-2015 16:36:06     [mkdir] Created dir: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
21-Jul-2015 16:36:06     [javac] /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/build.xml:126: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
21-Jul-2015 16:36:06     [javac] Compiling 584 source files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
21-Jul-2015 16:36:13     [javac] Note: Some input files use unchecked or unsafe operations.
21-Jul-2015 16:36:13     [javac] Note: Recompile with -Xlint:unchecked for details.
21-Jul-2015 16:36:13
21-Jul-2015 16:36:13 gwtc:
21-Jul-2015 16:36:14      [java] Compiling module edu.illinois.ncsa.mmdb.web.MMDB
21-Jul-2015 16:37:11      [java]    Compiling 6 permutations
21-Jul-2015 16:37:11      [java]       Compiling permutation 0...
21-Jul-2015 16:37:26      [java]       Compiling permutation 1...
21-Jul-2015 16:37:40      [java]       Compiling permutation 2...
21-Jul-2015 16:37:54      [java]       Compiling permutation 3...
21-Jul-2015 16:38:05      [java]       Compiling permutation 4...
21-Jul-2015 16:38:18      [java]       Compiling permutation 5...
21-Jul-2015 16:38:31      [java]    Compile of permutations succeeded
21-Jul-2015 16:38:33      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/mmdb
21-Jul-2015 16:38:33      [java]    Link succeeded
21-Jul-2015 16:38:33      [java]    Compilation succeeded -- 138.544s
21-Jul-2015 16:38:35      [java] Compiling module edu.illinois.ncsa.mmdb.web.Embed
21-Jul-2015 16:39:10      [java]    Compiling 6 permutations
21-Jul-2015 16:39:10      [java]       Compiling permutation 0...
21-Jul-2015 16:39:19      [java]       Compiling permutation 1...
21-Jul-2015 16:39:26      [java]       Compiling permutation 2...
21-Jul-2015 16:39:31      [java]       Compiling permutation 3...
21-Jul-2015 16:39:38      [java]       Compiling permutation 4...
21-Jul-2015 16:39:43      [java]       Compiling permutation 5...
21-Jul-2015 16:39:49      [java]    Compile of permutations succeeded
21-Jul-2015 16:39:50      [java] Linking into /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/embed
21-Jul-2015 16:39:50      [java]    Link succeeded
21-Jul-2015 16:39:50      [java]    Compilation succeeded -- 74.897s
21-Jul-2015 16:39:50
21-Jul-2015 16:39:50 resources:
21-Jul-2015 16:39:50      [copy] Copying 6 files to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
21-Jul-2015 16:39:50      [copy] Copying 1 file to /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/war/WEB-INF/classes
21-Jul-2015 16:39:50
21-Jul-2015 16:39:50 war:
21-Jul-2015 16:39:50       [zip] Building zip: /home/bamboo/bamboo-agent-home/xml-data/build-dir/MMDB-MEDICI70-JOB1/mmdb-gwt/edu.illinois.ncsa.mmdb.web/medici.war
21-Jul-2015 16:39:57
21-Jul-2015 16:39:57 bamboo:
21-Jul-2015 16:39:57
21-Jul-2015 16:39:57 BUILD SUCCESSFUL
21-Jul-2015 16:39:57 Total time: 3 minutes 59 seconds
21-Jul-2015 16:39:57 Finished task 'Web App' with result: Success
21-Jul-2015 16:39:57 Running post build plugin 'Artifact Copier'
21-Jul-2015 16:39:57 Publishing an artifact: medici.war
21-Jul-2015 16:39:58 Finished publishing of artifact Job artifact: [medici.war], pattern: [medici.war] anchored at: [mmdb-gwt/edu.illinois.ncsa.mmdb.web] in 0s
21-Jul-2015 16:39:58 Running post build plugin 'npm Cache Cleanup'
21-Jul-2015 16:39:58 Running post build plugin 'NCover Results Collector'
21-Jul-2015 16:39:58 Running post build plugin 'Clover Results Collector'
21-Jul-2015 16:39:58 Running post build plugin 'Docker Container Cleanup'
21-Jul-2015 16:39:58 Finalising the build...
21-Jul-2015 16:39:58 Stopping timer.
21-Jul-2015 16:39:58 Build MMDB-MEDICI70-JOB1-80 completed.
21-Jul-2015 16:39:58 Running on server: post build plugin 'NCover Results Collector'
21-Jul-2015 16:39:58 Running on server: post build plugin 'Clover Delta Calculator'
21-Jul-2015 16:39:58 Running on server: post build plugin 'Maven Dependencies Postprocessor'
21-Jul-2015 16:39:58 Running on server: post build plugin 'Build Hanging Detection Configuration'
21-Jul-2015 16:39:58 All post build plugins have finished
21-Jul-2015 16:39:58 Generating build results summary...
21-Jul-2015 16:39:58 Saving build results to disk...
21-Jul-2015 16:39:58 Logging substituted variables...
21-Jul-2015 16:39:58 Indexing build results...
21-Jul-2015 16:39:58 Finished building MMDB-MEDICI70-JOB1-80.